FF:10163-103B1: Difference between revisions

Latest revision as of 12:24, 3 June 2020

Name:	occipital cortex, adult, donor10252
Species:	Human (Homo sapiens)
Library ID:	CNhs12320
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	occipital cortex
dev stage	NA
sex	female
age	76
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005357

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12320		CAGE		DRX008691		DRR009563

Accession ID Hg19

Library id		BAM		CTSS
CNhs12320		DRZ000988		DRZ002373

Accession ID Hg38

Library id		BAM		CTSS
CNhs12320		DRZ012338		DRZ013723

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10034		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.357
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	1.039
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.272
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0643
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0814
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.551
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.12
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0113
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.214
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0643
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.12
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.214
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.214
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0643
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.29
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.973
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.12
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0643
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.206
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.12
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.172
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0643
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.682
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0643
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.247
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.326
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0168
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0643
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0643
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.569
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0595
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.51
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0751
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0792
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.684
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.12
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.12
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.55
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.494
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.0643
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.597
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.575
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0643
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.12
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.292
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0643
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.622
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.684
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.0643
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.551
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0643
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.738
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0643
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12320

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0443
MA0003.1	MA0003.1	0.207
MA0004.1	MA0004.1	0.339
MA0006.1	MA0006.1	0.273
MA0007.1	MA0007.1	0.356
MA0009.1	MA0009.1	0.189
MA0014.1	MA0014.1	0.638
MA0017.1	MA0017.1	3.50006e-4
MA0018.2	MA0018.2	0.546
MA0019.1	MA0019.1	0.465
MA0024.1	MA0024.1	0.64
MA0025.1	MA0025.1	0.429
MA0027.1	MA0027.1	0.627
MA0028.1	MA0028.1	0.0564
MA0029.1	MA0029.1	0.0687
MA0030.1	MA0030.1	0.555
MA0031.1	MA0031.1	0.816
MA0035.2	MA0035.2	0.00513
MA0038.1	MA0038.1	0.53
MA0039.2	MA0039.2	0.135
MA0040.1	MA0040.1	0.859
MA0041.1	MA0041.1	0.374
MA0042.1	MA0042.1	0.795
MA0043.1	MA0043.1	0.874
MA0046.1	MA0046.1	9.13091e-4
MA0047.2	MA0047.2	0.0947
MA0048.1	MA0048.1	0.186
MA0050.1	MA0050.1	0.107
MA0051.1	MA0051.1	0.114
MA0052.1	MA0052.1	0.445
MA0055.1	MA0055.1	0.00249
MA0057.1	MA0057.1	0.786
MA0058.1	MA0058.1	0.271
MA0059.1	MA0059.1	0.0694
MA0060.1	MA0060.1	0.682
MA0061.1	MA0061.1	0.00783
MA0062.2	MA0062.2	0.00259
MA0065.2	MA0065.2	1.68703e-4
MA0066.1	MA0066.1	0.00605
MA0067.1	MA0067.1	0.875
MA0068.1	MA0068.1	0.72
MA0069.1	MA0069.1	0.616
MA0070.1	MA0070.1	0.739
MA0071.1	MA0071.1	0.0232
MA0072.1	MA0072.1	0.343
MA0073.1	MA0073.1	0.455
MA0074.1	MA0074.1	0.26
MA0076.1	MA0076.1	0.0852
MA0077.1	MA0077.1	0.164
MA0078.1	MA0078.1	0.794
MA0079.2	MA0079.2	0.753
MA0080.2	MA0080.2	4.09915e-7
MA0081.1	MA0081.1	0.0262
MA0083.1	MA0083.1	0.00509
MA0084.1	MA0084.1	0.633
MA0087.1	MA0087.1	0.853
MA0088.1	MA0088.1	0.187
MA0090.1	MA0090.1	0.409
MA0091.1	MA0091.1	0.425
MA0092.1	MA0092.1	0.254
MA0093.1	MA0093.1	0.343
MA0099.2	MA0099.2	7.65687e-21
MA0100.1	MA0100.1	0.487
MA0101.1	MA0101.1	0.00384
MA0102.2	MA0102.2	0.19
MA0103.1	MA0103.1	0.144
MA0104.2	MA0104.2	0.396
MA0105.1	MA0105.1	0.0013
MA0106.1	MA0106.1	0.0475
MA0107.1	MA0107.1	0.00434
MA0108.2	MA0108.2	0.136
MA0111.1	MA0111.1	0.612
MA0112.2	MA0112.2	8.78094e-4
MA0113.1	MA0113.1	0.573
MA0114.1	MA0114.1	0.00117
MA0115.1	MA0115.1	0.318
MA0116.1	MA0116.1	0.00619
MA0117.1	MA0117.1	0.853
MA0119.1	MA0119.1	0.149
MA0122.1	MA0122.1	0.782
MA0124.1	MA0124.1	0.938
MA0125.1	MA0125.1	0.523
MA0131.1	MA0131.1	0.992
MA0135.1	MA0135.1	0.167
MA0136.1	MA0136.1	7.91622e-12
MA0137.2	MA0137.2	0.321
MA0138.2	MA0138.2	0.381
MA0139.1	MA0139.1	0.349
MA0140.1	MA0140.1	0.00233
MA0141.1	MA0141.1	0.00255
MA0142.1	MA0142.1	0.945
MA0143.1	MA0143.1	0.486
MA0144.1	MA0144.1	0.704
MA0145.1	MA0145.1	0.168
MA0146.1	MA0146.1	0.0169
MA0147.1	MA0147.1	0.283
MA0148.1	MA0148.1	0.0797
MA0149.1	MA0149.1	0.0229
MA0150.1	MA0150.1	1.35454e-4
MA0152.1	MA0152.1	0.447
MA0153.1	MA0153.1	0.0732
MA0154.1	MA0154.1	0.043
MA0155.1	MA0155.1	0.489
MA0156.1	MA0156.1	1.62556e-7
MA0157.1	MA0157.1	0.739
MA0159.1	MA0159.1	0.00375
MA0160.1	MA0160.1	0.00947
MA0162.1	MA0162.1	0.113
MA0163.1	MA0163.1	1.51358e-5
MA0164.1	MA0164.1	0.875
MA0258.1	MA0258.1	0.0099
MA0259.1	MA0259.1	0.785

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12320

Novel motif	Logo	P-value
1	1	0.0607
10	10	0.0619
100	100	0.401
101	101	0.586
102	102	0.977
103	103	0.0634
104	104	0.149
105	105	0.109
106	106	0.0535
107	107	0.115
108	108	0.943
109	109	0.00144
11	11	0.0142
110	110	0.0484
111	111	0.221
112	112	0.325
113	113	0.579
114	114	0.19
115	115	0.943
116	116	0.133
117	117	0.0118
118	118	0.143
119	119	0.287
12	12	0.433
120	120	0.209
121	121	0.247
122	122	0.797
123	123	0.306
124	124	0.201
125	125	0.29
126	126	0.0267
127	127	0.401
128	128	0.197
129	129	0.567
13	13	0.00167
130	130	0.121
131	131	0.0673
132	132	0.555
133	133	0.127
134	134	0.591
135	135	0.322
136	136	0.00119
137	137	0.931
138	138	0.947
139	139	0.15
14	14	0.793
140	140	0.916
141	141	0.464
142	142	0.53
143	143	0.0928
144	144	0.922
145	145	0.144
146	146	0.506
147	147	0.903
148	148	0.241
149	149	0.161
15	15	0.105
150	150	0.157
151	151	0.673
152	152	0.0806
153	153	0.7
154	154	0.428
155	155	0.855
156	156	0.556
157	157	0.42
158	158	0.139
159	159	0.015
16	16	0.0303
160	160	0.232
161	161	0.252
162	162	0.621
163	163	0.721
164	164	0.0576
165	165	0.0707
166	166	0.865
167	167	0.814
168	168	0.42
169	169	0.0112
17	17	0.11
18	18	0.0762
19	19	0.207
2	2	0.801
20	20	0.202
21	21	0.0494
22	22	0.184
23	23	0.458
24	24	0.0219
25	25	0.443
26	26	5.56588e-4
27	27	0.625
28	28	0.654
29	29	0.00622
3	3	0.0513
30	30	0.869
31	31	0.918
32	32	0.0156
33	33	0.0501
34	34	0.636
35	35	0.596
36	36	0.16
37	37	0.0351
38	38	0.386
39	39	0.29
4	4	0.823
40	40	0.0282
41	41	0.277
42	42	0.229
43	43	0.133
44	44	0.132
45	45	0.656
46	46	0.063
47	47	0.0652
48	48	0.0675
49	49	0.293
5	5	0.753
50	50	0.438
51	51	0.364
52	52	0.543
53	53	0.734
54	54	0.373
55	55	0.774
56	56	0.461
57	57	0.43
58	58	0.302
59	59	0.0606
6	6	0.836
60	60	0.0785
61	61	0.077
62	62	0.17
63	63	0.244
64	64	0.196
65	65	0.271
66	66	0.169
67	67	0.433
68	68	0.152
69	69	0.417
7	7	0.0606
70	70	0.0574
71	71	0.00979
72	72	0.296
73	73	0.0249
74	74	0.956
75	75	0.0395
76	76	0.529
77	77	0.127
78	78	0.0047
79	79	0.4
8	8	0.0565
80	80	0.373
81	81	0.603
82	82	0.513
83	83	0.0695
84	84	0.723
85	85	0.225
86	86	0.233
87	87	5.05946e-5
88	88	0.738
89	89	0.258
9	9	0.301
90	90	0.0831
91	91	0.841
92	92	0.532
93	93	0.867
94	94	0.193
95	95	0.00869
96	96	0.894
97	97	0.762
98	98	0.267
99	99	0.552

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12320

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010163 occipital cortex - adult donor

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002021 (occipital lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010163 (occipital cortex - adult donor)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005357
+|HumanCAGEScanFiles=NCig10034;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008691;DRR009563;DRZ000988;DRZ002373;DRZ012338;DRZ013723
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002021,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 7: / Line 10: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.52!333.32!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.32!207.68!OLIG1;;chr9:77112244..77112262,+!p1@RORB!2.29!216.46!RORB;;chr22:38380543..38380569,-!p1@SOX10!2.19!155.00!SOX10;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.03!106.64!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.99!196.99!C11orf9;;chr3:181429704..181429722,+!p1@SOX2!1.93!85.08!SOX2;;chr4:81118647..81118666,+!p1@PRDM8!1.91!103.76!PRDM8;;chr8:53322304..53322340,-!p1@ST18!1.90!77.58!ST18;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.88!74.23!POU3F3;;chr11:113930425..113930471,+!p1@ZBTB16!1.86!102.33!ZBTB16;;chr17:53342311..53342400,+!p1@HLF!1.82!73.59!HLF;;chr2:145277882..145277967,-!p3@ZEB2!1.75!94.18!ZEB2;;chr14:29235961..29236008,+!p1@FOXG1!1.73!53.32!FOXG1;;chr9:114287433..114287513,+!p1@ZNF483!1.69!119.57!ZNF483;;chr12:26277817..26277863,-!p2@BHLHE41!1.69!64.17!BHLHE41;;chr10:134599649..134599653,-!p1@NKX6-2!1.69!47.73!NKX6-2;;chr10:64134120..64134183,+!p1@ZNF365!1.67!55.23!ZNF365;;chr8:145560111..145560165,-!p2@SCRT1!1.67!46.29!SCRT1;;chr19:13135582..13135600,+!p3@NFIX!1.67!45.97!NFIX;;chr8:40755333..40755352,-!p1@ZMAT4!1.67!45.81!ZMAT4;;chr21:34398234..34398250,+!p1@OLIG2!1.67!45.66!OLIG2;;chr19:13135386..13135435,+!p4@NFIX!1.64!42.78!NFIX;;chr8:53322347..53322378,-!p2@ST18!1.63!41.98!ST18;;chr19:46801639..46801699,+!p1@HIF3A!1.62!40.55!HIF3A;;chr21:34442540..34442560,+!p2@OLIG1!1.62!40.55!OLIG1;;chr2:95963052..95963106,+!p1@KCNIP3!1.61!39.91!KCNIP3;;chr12:106976678..106976708,+!p2@RFX4!1.61!39.59!RFX4;;chr8:145560371..145560449,-!p1@SCRT1!1.61!39.43!SCRT1;;chr12:26277956..26277980,-!p1@BHLHE41!1.59!131.38!BHLHE41;;chr17:37764128..37764258,-!p1@NEUROD2!1.59!38.15!NEUROD2;;chr16:1031762..1031781,+!p1@SOX8!1.57!36.40!SOX8;;chr2:2334997..2335053,-!p1@MYT1L!1.57!35.76!MYT1L;;chr12:54779511..54779577,-!p5@ZNF385A!1.56!35.44!ZNF385A;;chr2:60781201..60781258,-!p3@BCL11A!1.56!35.28!BCL11A;;chr10:119302232..119302265,+!p1@EMX2!1.54!33.52!EMX2;;chr5:88178983..88179012,-!p1@MEF2C!1.52!236.26!MEF2C;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.50!30.33!SMARCE1;;chr2:162272785..162272836,+!p1@TBR1!1.49!29.85!TBR1;;chr18:53070846..53070902,-!p6@TCF4!1.48!29.05!TCF4;;chr15:80696703..80696754,+!p1@ARNT2!1.47!37.83!ARNT2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.46!28.10!POU3F3;;chr12:106976774..106976788,+!p1@RFX4!1.46!27.78!RFX4;;chr5:92920256..92920282,+!p7@NR2F1!1.45!32.72!NR2F1;;chr14:29236269..29236285,+!p3@FOXG1!1.45!27.30!FOXG1;;chr10:48355030..48355090,+!p1@ZNF488!1.44!33.68!ZNF488;;chr3:126076242..126076257,-!p1@KLF15!1.44!32.88!KLF15;;chr11:31832862..31832884,-!p2@PAX6!1.44!26.82!PAX6;;chr3:181429741..181429767,+!p2@SOX2!1.43!25.86!SOX2;;chr17:7492684..7492778,-!p2@SOX15!1.41!51.08!SOX15;;chr11:8102846..8102892,+!p1@TUB!1.41!34.48!TUB;;chrX:25034067..25034088,-!p1@ARX!1.41!24.58!ARX;;chr1:214161272..214161322,+!p1@PROX1!1.39!33.04!PROX1;;chr9:126774018..126774055,+!p1@LHX2!1.39!23.47!LHX2;;chr14:29234581..29234601,+!p2@FOXG1!1.39!23.47!FOXG1;;chr15:31658288..31658338,+!p4@KLF13!1.39!23.31!KLF13;;chr2:166326200..166326216,+!p1@CSRNP3!1.38!33.68!CSRNP3;;chr1:244219775..244219893,+!p2@ZNF238!1.38!30.81!ZNF238;;chr15:31631789..31631811,+!p13@KLF13!1.38!22.83!KLF13;;chr11:125034640..125034655,+!p1@PKNOX2!1.38!22.83!PKNOX2;;chr16:85932760..85932775,+!p1@IRF8!1.37!22.51!IRF8;;chr11:47400078..47400106,-!p1@SPI1!1.37!22.35!SPI1;;chr1:61548069..61548102,+!p3@NFIA!1.36!52.68!NFIA;;chr6:143266185..143266238,-!p2@HIVEP2!1.35!29.05!HIVEP2;;chr19:46800289..46800327,+!p2@HIF3A!1.34!20.91!HIF3A;;chr19:7580549..7580596,+!p3@ZNF358!1.34!20.91!ZNF358;;chr22:41763452..41763466,+!p2@TEF!1.33!20.59!TEF;;chr14:33403881..33403924,+!p1@NPAS3!1.33!20.27!NPAS3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.32!20.11!ZBED1;;chr12:103351444..103351461,+!p1@ASCL1!1.32!19.79!ASCL1;;chr11:113930401..113930422,+!p3@ZBTB16!1.31!19.48!ZBTB16;;chr4:57547454..57547469,-!p1@HOPX!1.30!19.16!HOPX;;chr15:80735246..80735321,+!p3@ARNT2!1.28!18.04!ARNT2;;chr2:60780607..60780624,-!p2@BCL11A!1.26!52.20!BCL11A;;chr11:113930291..113930339,+!p2@ZBTB16!1.26!27.78!ZBTB16;;chr12:54785074..54785122,-!p2@ZNF385A!1.26!26.18!ZNF385A;;chr14:33403648..33403710,+!p3@NPAS3!1.26!17.24!NPAS3;;chr15:61521417..61521460,-!p2@RORA!1.25!37.35!RORA;;chr14:33408072..33408114,+!p2@NPAS3!1.23!18.68!NPAS3;;chr6:15401104..15401166,+!p5@JARID2!1.22!15.64!JARID2;;chr7:63505799..63505904,+!p1@ZNF727!1.21!15.17!ZNF727;;chr17:70117153..70117174,+!p1@SOX9!1.20!150.69!SOX9;;chr3:187463179..187463201,-!p2@BCL6!1.19!58.90!BCL6;;chr6:126112039..126112062,+!p8@NCOA7!1.19!17.40!NCOA7;;chr17:38219209..38219230,+!p1@THRA!1.18!181.82!THRA;;chr15:80733570..80733659,+!p2@ARNT2!1.18!14.05!ARNT2;;chr16:67198633..67198671,+!p1@HSF4!1.18!14.05!HSF4;;chr5:71803177..71803255,-!p1@ZNF366!1.17!13.89!ZNF366;;chr6:28321971..28321995,-!p1@ZNF323!1.17!13.73!ZNF323;;chr2:2330039..2330072,-!p6@MYT1L!1.17!13.73!MYT1L;;chr9:77112225..77112238,+!p2@RORB!1.16!13.57!RORB;;chr2:95963120..95963136,+!p2@KCNIP3!1.16!13.41!KCNIP3;;chr3:114343039..114343085,-!p8@ZBTB20!1.16!13.41!ZBTB20;;chr9:126773880..126773895,+!p2@LHX2!1.15!13.25!LHX2;;chr16:67198683..67198698,+!p2@HSF4!1.15!13.09!HSF4;;chr9:3525867..3525902,-!p3@RFX3!1.14!44.70!RFX3;;chr21:39870339..39870443,-!p1@ERG!1.14!12.93!ERG;;chr19:30863271..30863338,+!p1@ZNF536!1.14!12.93!ZNF536;;chr17:38256822..38256851,-!p1@NR1D1!1.13!97.54!NR1D1;;chr5:88179017..88179046,-!p2@MEF2C!1.13!50.13!MEF2C;;chr11:125034605..125034636,+!p2@PKNOX2!1.13!12.61!PKNOX2;;chr1:40105299..40105326,-!p1@HEYL!1.13!12.61!HEYL;;chr12:24715376..24715432,-!p1@SOX5!1.12!15.32!SOX5;;chr6:19837592..19837621,+!p1@ID4!1.11!72.63!ID4;;chr18:52989031..52989079,-!p2@TCF4!1.11!28.10!TCF4;;chrX:70315688..70315709,+!p1@FOXO4!1.11!27.78!FOXO4;;chr2:2328299..2328363,-!p3@MYT1L!1.11!11.97!MYT1L;;chr8:30890810..30890880,-!p1@PURG!1.10!11.49!PURG;;chr15:31631813..31631825,+!p17@KLF13!1.09!11.33!KLF13;;chr2:180726291..180726311,-!p1@ZNF385B!1.09!11.33!ZNF385B;;chr2:162272889..162272915,+!p2@TBR1!1.09!11.17!TBR1;;chr3:18466787..18466839,-!p1@SATB1!1.08!50.13!SATB1;;chr9:3525910..3525955,-!p4@RFX3!1.08!33.36!RFX3;;chr3:114819124..114819200,-!p3@ZBTB20!1.08!25.70!ZBTB20;;chr3:24536253..24536328,-!p1@THRB!1.08!20.91!THRB;;chr19:38085768..38085821,+!p1@ZNF540!1.08!16.60!ZNF540;;chr12:26277929..26277955,-!p3@BHLHE41!1.08!15.80!BHLHE41;;chr14:24020938..24020988,-!p1@ZFHX2!1.08!15.80!ZFHX2;;chr11:31832658..31832681,-!p1@PAX6!1.08!11.01!PAX6;;chr16:51185318..51185348,-!p2@SALL1!1.08!11.01!SALL1;;chr16:67197776..67197831,+!p4@HSF4!1.08!11.01!HSF4;;chr9:126774058..126774081,+!p3@LHX2!1.08!11.01!LHX2;;chr11:31832807..31832823,-!p4@PAX6!1.07!10.86!PAX6;;chr9:14314946..14314983,-!p8@NFIB!1.07!10.70!NFIB;;chr5:138609489..138609542,+!p8@MATR3!1.07!10.70!MATR3;;chr19:13135566..13135577,+!p9@NFIX!1.07!10.70!NFIX;;chr21:34442584..34442587,+!p3@OLIG1!1.07!10.70!OLIG1;;chr3:18466660..18466676,-!p5@SATB1!1.06!12.45!SATB1;;chr19:57183114..57183145,-!p1@ZNF835!1.06!11.65!ZNF835;;chr2:214016314..214016343,-!p2@IKZF2!1.05!17.24!IKZF2;;chr8:60031682..60031710,-!p2@TOX!1.05!16.60!TOX;;chr16:86544113..86544145,+!p1@FOXF1!1.05!12.77!FOXF1;;chr15:61521462..61521482,-!p4@RORA!1.05!10.22!RORA;;chr13:100623375..100623425,-!p1@ZIC5!1.05!10.22!ZIC5;;chr8:10588010..10588030,-!p1@SOX7!1.05!10.22!SOX7;;chr3:126076264..126076305,-!p2@KLF15!1.04!13.89!KLF15;;chr6:126112074..126112144,+!p1@NCOA7!1.03!130.42!NCOA7;;chr1:8877692..8877732,-!p1@RERE!1.03!79.18!RERE;;chr2:200323414..200323455,-!p1@SATB2!1.03!21.07!SATB2;;chr7:64023410..64023428,-!p2@ZNF680!1.03!15.48!ZNF680;;chr5:88179518..88179569,-!p5@MEF2C!1.03!12.93!MEF2C;;chr7:39125511..39125560,+!p1@POU6F2!1.03!9.74!POU6F2;;chr19:57352109..57352153,-!p2@ZIM2!1.03!9.74!ZIM2;;chr12:106976656..106976672,+!p4@RFX4!1.03!9.74!RFX4;;chr7:73038839..73038862,-!p1@MLXIPL!1.02!9.58!MLXIPL;;chr2:162273196..162273210,+!p5@TBR1!1.02!9.58!TBR1;;chr2:162272716..162272753,+!p3@TBR1!1.02!9.42!TBR1;;chr2:162273254..162273267,+!p6@TBR1!1.02!9.42!TBR1;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.17!ZBTB38;;chr2:100721328..100721348,-!p4@AFF3!1.01!9.26!AFF3;;chr13:100634031..100634045,+!p1@ZIC2!1.01!9.26!ZIC2;;chr15:80696666..80696700,+!p4@ARNT2!1.01!9.26!ARNT2;;chr16:67197952..67197990,+!p5@HSF4!1.01!9.26!HSF4;;chr16:79634624..79634642,-!p1@MAF!1.00!36.56!MAF;;chr2:113057415..113057477,+!p3@ZC3H6!1.00!11.97!ZC3H6;;chr20:62680984..62680999,-!p1@SOX18!1.00!11.97!SOX18;;chr19:38720294..38720348,-!p1@DPF1!1.00!11.33!DPF1;;chr2:162273241..162273253,+!p4@TBR1!1.00!9.10!TBR1;;chr4:57547751..57547764,-!p6@HOPX!1.00!8.94!HOPX;;chr12:103352277..103352324,+!p2@ASCL1!1.00!8.94!ASCL1;;chr5:172483347..172483407,+!p1@C5orf41!0.99!67.21!CREBRF;;chr13:46549911..46549956,-!p3@ZC3H13!0.99!12.77!ZC3H13;;chr4:57522166..57522260,-!p2@HOPX!0.99!10.22!HOPX;;chr2:180726254..180726275,-!p4@ZNF385B!0.99!8.78!ZNF385B;;chr2:68592406..68592424,+!p1@PLEK!0.99!8.78!PLEK;;chr6:28321827..28321856,-!p5@ZNF323!0.99!8.78!ZNF323;;chr19:21512202..21512225,-!p1@ZNF708!0.98!45.34!ZNF708;;chr19:21512115..21512135,-!p3@ZNF708!0.98!17.72!ZNF708;;chr2:180726331..180726344,-!p5@ZNF385B!0.98!8.62!ZNF385B;;chr3:141105235..141105307,+!p7@ZBTB38!0.98!8.62!ZBTB38;;chr16:4323246..4323299,-!p5@TFAP4!0.98!8.46!TFAP4;;chr1:14075903..14075940,+!p1@PRDM2!0.97!182.30!PRDM2;;chr14:73360799..73360817,-!p1@DPF3!0.97!29.85!DPF3;;chr19:53636125..53636178,-!p1@ZNF415!0.97!24.10!ZNF415;;chr5:178368186..178368238,+!p1@ZNF454!0.97!15.32!ZNF454;;chr7:64023441..64023462,-!p1@ZNF680!0.96!66.89!ZNF680;;chr19:21512144..21512191,-!p2@ZNF708!0.96!39.11!ZNF708;;chr10:38265517..38265591,-!p1@ZNF25!0.96!32.41!ZNF25;;chr8:106330656..106330684,+!p1@ZFPM2!0.96!21.87!ZFPM2;;chr6:108487289..108487302,+!p1@NR2E1!0.96!8.14!NR2E1;;chr15:61521495..61521506,-!p5@RORA!0.96!8.14!RORA;;chr16:67197654..67197716,+!p3@HSF4!0.96!8.14!HSF4;;chr5:139487363..139487444,+!p1@PURA!0.95!61.94!PURA;;chr14:21994337..21994442,-!p1@SALL2!0.95!22.67!SALL2;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002021;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10163-103B1
 |is_a=EFO:0002091;;FF:0000002;;FF:0010163
 |is_obsolete=
+|library_id=CNhs12320
+|library_id_phase_based=2:CNhs12320
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10163
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10163
 |name=occipital cortex, adult, donor10252
 |namespace=FANTOM5
@@ Line 46: / Line 62: @@
 |profile_cagescan=NCig10034,,,
 |profile_hcage=CNhs12320,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=103
@@ Line 62: / Line 80: @@
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 |sample_cell_line=
@@ Line 83: / Line 102: @@
 |top_motifs=DBP:3.88946881253;RREB1:3.64284049585;REST:3.46795473917;HOXA9_MEIS1:3.42977681827;CUX2:3.41378219144;MYFfamily:3.40137486392;PRRX1,2:3.32465038404;FOXP1:3.30257027681;ZFP161:3.28042031078;NHLH1,2:3.22834415441;AHR_ARNT_ARNT2:3.17875206167;ATF2:3.10162513208;EGR1..3:3.06462392223;PRDM1:3.00269612844;MED-1{core}:2.99981508086;FOXQ1:2.97291905611;MTE{core}:2.92908383671;SOX2:2.92876877326;PAX4:2.90278904178;BPTF:2.7987891738;FOXD3:2.79658929074;TFAP2B:2.73723158093;GTF2I:2.71007675153;OCT4_SOX2{dimer}:2.6828224335;MZF1:2.61522905402;PATZ1:2.60387095322;MTF1:2.5492628627;GATA4:2.54008769167;POU6F1:2.50541667901;ZBTB6:2.50175786337;HBP1_HMGB_SSRP1_UBTF:2.50155574363;SOX5:2.46808951996;POU5F1:2.46471150307;ZNF384:2.4403464076;HIC1:2.39818473584;PAX6:2.27608469623;NKX3-2:2.25214658562;IKZF2:2.22968123922;CDC5L:2.11397015256;NFIX:2.10032351377;SOX{8,9,10}:2.06998943992;FOXM1:2.06106351395;POU3F1..4:2.03554124766;TGIF1:1.92183999011;BREu{core}:1.90141579253;T:1.88938316207;RFX2..5_RFXANK_RFXAP:1.87667204852;NFIL3:1.85936093908;HMGA1,2:1.83034459119;SMAD1..7,9:1.81489759405;RFX1:1.81375322093;PAX5:1.78785305739;MAZ:1.78207556849;FOX{F1,F2,J1}:1.77468873393;POU1F1:1.75944117756;LMO2:1.75813274014;NKX6-1,2:1.70349867139;FOXL1:1.70212754448;GFI1B:1.6980404134;EP300:1.68371225139;XBP1:1.65101041035;ZBTB16:1.61644316902;HOX{A4,D4}:1.60804566042;TFDP1:1.60026872269;RBPJ:1.59531974207;ARID5B:1.59216003582;FOXP3:1.48203969715;KLF4:1.44725189047;NRF1:1.39634527666;TOPORS:1.38255210803;TEF:1.38010532869;AR:1.34552881436;FOX{D1,D2}:1.32697097868;ALX1:1.31101647709;SOX17:1.2878874311;STAT2,4,6:1.19000672617;SP1:1.1216063078;ZNF143:1.03946115281;LEF1_TCF7_TCF7L1,2:1.02779681429;STAT1,3:0.959238697585;FOX{I1,J2}:0.889437591463;EBF1:0.886459859507;NANOG:0.870230758849;GTF2A1,2:0.855744451395;TFAP2{A,C}:0.820241898816;CRX:0.812346248264;SPZ1:0.7877136316;FOXO1,3,4:0.755183106854;ADNP_IRX_SIX_ZHX:0.753354018971;MYBL2:0.749249399519;JUN:0.712874801867;MAFB:0.679726413324;ZNF238:0.669835349834;RORA:0.663431167599;ZNF423:0.662086290132;GCM1,2:0.640688934896;NR3C1:0.639567842979;HAND1,2:0.618911278712;GZF1:0.592669573272;TLX1..3_NFIC{dimer}:0.579597241891;TLX2:0.575493410173;SREBF1,2:0.562144945777;FOXN1:0.530030628124;CREB1:0.51362237061;HMX1:0.505732085109;ZEB1:0.439762350038;ZIC1..3:0.427231618798;AIRE:0.415947586801;ONECUT1,2:0.373960878335;IRF7:0.370115984496;GFI1:0.353945419136;HOX{A6,A7,B6,B7}:0.344016450146;MYOD1:0.324227299287;NKX2-3_NKX2-5:0.3162827325;LHX3,4:0.298179627654;MEF2{A,B,C,D}:0.195904223768;PITX1..3:0.135803223965;NKX2-2,8:0.133501856358;ATF5_CREB3:0.131894197096;NFATC1..3:0.123207353596;NFY{A,B,C}:0.121916048924;UFEwm:0.0848657952858;PAX2:0.0757404253344;XCPE1{core}:0.023631021531;IRF1,2:-0.0176152808878;CDX1,2,4:-0.0205651889763;PBX1:-0.17093478805;FOXA2:-0.214085018178;NKX3-1:-0.221794089676;DMAP1_NCOR{1,2}_SMARC:-0.225514258106;HSF1,2:-0.234296270731;YY1:-0.248465294295;ESRRA:-0.289723527681;ATF4:-0.390948141189;CEBPA,B_DDIT3:-0.393525587615;SPI1:-0.433321568234;NFE2L2:-0.439694162415;PDX1:-0.464867086338;EVI1:-0.46929243692;PAX1,9:-0.516136899291;IKZF1:-0.622379530879;NANOG{mouse}:-0.634136313854;VSX1,2:-0.66300659905;bHLH_family:-0.669428783383;SPIB:-0.674361960249;SNAI1..3:-0.694186071822;NFE2:-0.75342814125;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.780784892423;PAX3,7:-0.782678958072;ETS1,2:-0.785685722114;TBX4,5:-0.78820828254;ATF6:-0.9149769085;GATA6:-0.925096185185;E2F1..5:-0.987790965725;NFE2L1:-1.02395109418;TEAD1:-1.04200757669;NR1H4:-1.05025432067;HIF1A:-1.05248032874;TP53:-1.05752724865;PAX8:-1.06080726342;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.11017519303;HNF4A_NR2F1,2:-1.12396099513;HNF1A:-1.13175234568;TFAP4:-1.18010035995;FOSL2:-1.18810163812;BACH2:-1.2178893125;NFKB1_REL_RELA:-1.21948083155;TAL1_TCF{3,4,12}:-1.22397594005;FOS_FOS{B,L1}_JUN{B,D}:-1.23236583656;TFCP2:-1.24268845024;RUNX1..3:-1.3079635734;POU2F1..3:-1.32332557213;ZNF148:-1.35159149905;ELF1,2,4:-1.3821580027;ELK1,4_GABP{A,B1}:-1.40442001524;ALX4:-1.4969450577;NR5A1,2:-1.4980553741;NKX2-1,4:-1.50693208261;TBP:-1.52172666063;PPARG:-1.56543189274;RXR{A,B,G}:-1.57943363702;HLF:-1.68213720348;RXRA_VDR{dimer}:-1.78572124689;MYB:-1.84526453359;GLI1..3:-1.85210153067;SRF:-1.92074923497;STAT5{A,B}:-1.93613959286;NR6A1:-1.98796498598;ESR1:-2.01428773496;HOX{A5,B5}:-2.50045977329;EN1,2:-2.71234494534;HES1:-3.00033863733
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10163-103B1;search_select_hide=table117:FF:10163-103B1
 }}

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FF:10163-103B1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:24, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0