FF:10170-103B8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005484 | ||
|accession_numbers=CAGE;DRX008682;DRR009554;DRZ000979;DRZ002364;DRZ012329;DRZ013714 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000200,UBERON:0001870,UBERON:0000956,UBERON:0000479,UBERON:0002702,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000004 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.30!198.48!PEG3;;chr21:34442439..34442455,+!p1@OLIG1!2.23!170.13!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.21!160.38!TSC22D4;;chr9:114287433..114287513,+!p1@ZNF483!2.14!337.59!ZNF483;;chr17:53342311..53342400,+!p1@HLF!2.06!129.37!HLF;;chr9:77112244..77112262,+!p1@RORB!2.03!119.62!RORB;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!2.00!98.35!SMARCE1;;chr2:162272785..162272836,+!p1@TBR1!1.93!84.18!TBR1;;chrX:25034067..25034088,-!p1@ARX!1.92!81.52!ARX;;chr4:81118647..81118666,+!p1@PRDM8!1.91!105.44!PRDM8;;chr10:64134120..64134183,+!p1@ZNF365!1.91!94.81!ZNF365;;chr4:57547454..57547469,-!p1@HOPX!1.88!75.32!HOPX;;chr5:88178983..88179012,-!p1@MEF2C!1.86!515.69!MEF2C;;chr15:80733570..80733659,+!p2@ARNT2!1.84!68.23!ARNT2;;chr2:2334997..2335053,-!p1@MYT1L!1.82!64.68!MYT1L;;chr15:80735246..80735321,+!p3@ARNT2!1.81!62.91!ARNT2;;chr3:181429704..181429722,+!p1@SOX2!1.75!55.82!SOX2;;chr2:166326200..166326216,+!p1@CSRNP3!1.71!72.66!CSRNP3;;chr21:34442540..34442560,+!p2@OLIG1!1.71!50.51!OLIG1;;chr14:29235961..29236008,+!p1@FOXG1!1.70!49.62!FOXG1;;chr2:95963052..95963106,+!p1@KCNIP3!1.70!48.73!KCNIP3;;chr8:40755333..40755352,-!p1@ZMAT4!1.70!48.73!ZMAT4;;chr17:37764128..37764258,-!p1@NEUROD2!1.70!48.73!NEUROD2;;chr18:53070846..53070902,-!p6@TCF4!1.70!48.73!TCF4;;chr19:13135582..13135600,+!p3@NFIX!1.67!46.08!NFIX;;chr7:31380292..31380351,-!p1@NEUROD6!1.64!42.53!NEUROD6;;chr10:48355030..48355090,+!p1@ZNF488!1.62!51.39!ZNF488;;chr2:60781201..60781258,-!p3@BCL11A!1.62!40.76!BCL11A;;chr19:13135386..13135435,+!p4@NFIX!1.56!35.44!NFIX;;chrX:85969626..85969664,+!p1@DACH2!1.56!35.44!DACH2;;chr22:38380543..38380569,-!p1@SOX10!1.54!33.67!SOX10;;chr2:95963120..95963136,+!p2@KCNIP3!1.53!32.78!KCNIP3;;chr10:64133862..64133884,+!p4@ZNF365!1.52!31.90!ZNF365;;chr11:113930425..113930471,+!p1@ZBTB16!1.50!43.42!ZBTB16;;chr12:106976774..106976788,+!p1@RFX4!1.49!30.13!RFX4;;chr19:57352109..57352153,-!p2@ZIM2!1.49!30.13!ZIM2;;chr7:63505799..63505904,+!p1@ZNF727!1.48!29.24!ZNF727;;chr5:88179017..88179046,-!p2@MEF2C!1.47!111.64!MEF2C;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.45!27.47!POU3F3;;chr11:125034640..125034655,+!p1@PKNOX2!1.44!26.58!PKNOX2;;chr11:61520075..61520136,+!p1@C11orf9!1.43!54.05!C11orf9;;chr15:80696703..80696754,+!p1@ARNT2!1.43!34.56!ARNT2;;chr19:38085768..38085821,+!p1@ZNF540!1.41!36.33!ZNF540;;chr3:181429741..181429767,+!p2@SOX2!1.41!24.81!SOX2;;chr4:57522598..57522664,-!p3@HOPX!1.40!23.92!HOPX;;chr10:119302232..119302265,+!p1@EMX2!1.40!23.92!EMX2;;chr11:8102846..8102892,+!p1@TUB!1.39!32.78!TUB;;chr3:141105705..141105770,+!p4@ZBTB38!1.39!28.35!ZBTB38;;chr14:33403881..33403924,+!p1@NPAS3!1.38!23.04!NPAS3;;chr1:151032860..151032918,+!p1@MLLT11!1.37!254.30!MLLT11;;chr9:126774018..126774055,+!p1@LHX2!1.36!22.15!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.36!22.15!LHX2;;chr12:106976678..106976708,+!p2@RFX4!1.35!21.27!RFX4;;chr21:34398234..34398250,+!p1@OLIG2!1.35!21.27!OLIG2;;chr18:53070913..53070933,-!p16@TCF4!1.33!20.38!TCF4;;chr2:192015750..192015793,-!p2@STAT4!1.32!26.58!STAT4;;chr4:57522166..57522260,-!p2@HOPX!1.32!23.04!HOPX;;chr2:180726291..180726311,-!p1@ZNF385B!1.31!19.49!ZNF385B;;chr19:46801639..46801699,+!p1@HIF3A!1.31!19.49!HIF3A;;chr17:7492684..7492778,-!p2@SOX15!1.30!39.87!SOX15;;chr12:26277817..26277863,-!p2@BHLHE41!1.29!24.81!BHLHE41;;chr10:31610110..31610159,+!p2@ZEB1!1.29!18.61!ZEB1;;chr2:162272889..162272915,+!p2@TBR1!1.29!18.61!TBR1;;chr3:24536253..24536328,-!p1@THRB!1.28!33.67!THRB;;chr2:145277882..145277967,-!p3@ZEB2!1.28!31.01!ZEB2;;chrX:118739835..118739862,-!p1@NKRF!1.27!19.49!NKRF;;chr14:29236269..29236285,+!p3@FOXG1!1.27!17.72!FOXG1;;chr11:125034605..125034636,+!p2@PKNOX2!1.25!16.84!PKNOX2;;chr14:29234581..29234601,+!p2@FOXG1!1.25!16.84!FOXG1;;chr3:141105235..141105307,+!p7@ZBTB38!1.25!16.84!ZBTB38;;chr8:53322304..53322340,-!p1@ST18!1.25!16.84!ST18;;chr2:166428839..166428859,+!p2@CSRNP3!1.23!15.95!CSRNP3;;chrX:118739782..118739829,-!p2@NKRF!1.23!15.95!NKRF;;chr16:1031762..1031781,+!p1@SOX8!1.21!15.06!SOX8;;chr12:26277956..26277980,-!p1@BHLHE41!1.18!50.51!BHLHE41;;chr15:31658288..31658338,+!p4@KLF13!1.18!14.18!KLF13;;chr9:126774058..126774081,+!p3@LHX2!1.18!14.18!LHX2;;chr1:151032922..151032951,+!p2@MLLT11!1.17!23.04!MLLT11;;chr17:70117153..70117174,+!p1@SOX9!1.16!138.23!SOX9;;chr19:38720294..38720348,-!p1@DPF1!1.16!16.84!DPF1;;chr21:34442584..34442587,+!p3@OLIG1!1.16!13.29!OLIG1;;chr10:64134045..64134083,+!p3@ZNF365!1.16!13.29!ZNF365;;chr5:138609489..138609542,+!p8@MATR3!1.16!13.29!MATR3;;chr6:15401104..15401166,+!p5@JARID2!1.16!13.29!JARID2;;chr2:166428861..166428883,+!p3@CSRNP3!1.16!13.29!CSRNP3;;chr2:60780753..60780800,-!p1@BCL11A!1.13!62.02!BCL11A;;chr2:60780607..60780624,-!p2@BCL11A!1.13!38.10!BCL11A;;chr1:151032782..151032801,+!p4@MLLT11!1.13!24.81!MLLT11;;chr11:113930291..113930339,+!p2@ZBTB16!1.13!20.38!ZBTB16;;chr11:31832862..31832884,-!p2@PAX6!1.13!12.40!PAX6;;chr12:103351444..103351461,+!p1@ASCL1!1.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ZNF780B;;chr9:4300050..4300118,-!p1@GLIS3!0.42!15.06!GLIS3;;chr3:39195037..39195069,-!p2@CSRNP1!0.42!14.18!CSRNP1;;chr19:22018966..22019001,-!p1@ZNF43!0.42!13.29!ZNF43;;chr19:38146320..38146401,-!p1@ZFP30!0.42!12.40!ZFP30;;chr7:21467674..21467727,+!p1@SP4!0.42!8.86!SP4;;chr1:151043266..151043295,+!p2@GABPB2!0.42!4.43!GABPB2;;chr19:58570605..58570655,+!p1@ZNF135!0.42!3.54!ZNF135;;chr10:97890262..97890298,+!p4@ZNF518A!0.42!3.54!ZNF518A;;chr19:10305752..10305792,-!p2@DNMT1!0.42!3.54!DNMT1;;chr2:214015111..214015179,-!p1@IKZF2!0.42!3.54!IKZF2;;chr3:44626446..44626477,+!p1@ZNF660!0.42!3.54!ZNF660;;chr6:108882364..108882391,+!p4@FOXO3!0.42!2.66!FOXO3;;chr15:57210692..57210713,-!p5@ZNF280D!0.42!2.66!ZNF280D;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.42!1.77!GLIS1;;chr2:8822176..8822196,+!p1@ID2!0.41!329.62!ID2;;chr22:41697520..41697613,+!p1@ZC3H7B!0.41!132.91!ZC3H7B;;chr17:46125707..46125746,+!p2@NFE2L1!0.41!123.16!NFE2L1;;chr4:331578..331615,+!p1@ZNF141!0.41!24.81!ZNF141;;chr4:106068026..106068084,+!p1@TET2!0.41!20.38!TET2;;chr2:178257401..178257432,-!p4@NFE2L2!0.41!12.40!NFE2L2;;chr19:19976683..19976709,+!p1@ZNF253!0.41!9.75!ZNF253;;chr3:44666551..44666577,+!p2@ZNF197!0.41!7.97!ZNF197;;chr6:157099198..157099221,+!p3@ARID1B!0.41!7.09!ARID1B;;chr16:30597000..30597068,-!p1@ZNF785!0.41!5.32!ZNF785;;chr9:3525727..3525828,-!p2@RFX3!0.41!5.32!RFX3;;chr20:39946400..39946423,-!p3@ZHX3!0.41!3.54!ZHX3;;chr16:3185024..3185045,+!p2@ZNF213!0.41!3.54!ZNF213;;chr5:178322893..178322931,+!p1@ZFP2!0.41!2.66!ZFP2;;chr2:145274981..145274994,-!p9@ZEB2!0.41!2.66!ZEB2;;chr3:25469724..25469773,+!p1@RARB!0.41!2.66!RARB;;chr7:27779729..27779819,+!p1@TAX1BP1!0.40!143.54!TAX1BP1;;chr17:47866034..47866060,+!p1@KAT7!0.40!116.96!KAT7;;chr9:2015335..2015370,+!p1@SMARCA2!0.40!27.47!SMARCA2;;chr19:52598958..52599026,-!p1@ZNF841!0.40!21.27!ZNF841;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.40!15.06!ZNF410;;chr16:69419749..69419786,-!p2@TERF2!0.40!12.40!TERF2;;chr17:16472486..16472533,-!p1@ZNF287!0.40!10.63!ZNF287;;chr17:4981745..4981810,+!p1@ZFP3!0.40!10.63!ZFP3;;chr19:59084647..59084721,-!p1@MZF1!0.40!10.63!MZF1;;chr15:37392724..37392757,-!p1@MEIS2!0.40!9.75!MEIS2;;chr19:37341752..37341816,+!p1@ZNF345!0.40!6.20!ZNF345;;chr12:104531785..104531812,-!p3@NFYB!0.40!5.32!NFYB;;chr8:71315615..71315638,-!p3@NCOA2!0.40!5.32!NCOA2;;chr5:124084493..124084524,-!p2@ZNF608!0.40!4.43!ZNF608;;chr9:102584262..102584276,+!p1@NR4A3!0.40!4.43!NR4A3;;chr10:97889464..97889494,+!p3@ZNF518A!0.40!3.54!ZNF518A;;chr20:62462566..62462631,-!p1@ZBTB46!0.40!3.54!ZBTB46;;chr19:19976714..19976729,+!p3@ZNF253!0.40!3.54!ZNF253;;chr19:35417844..35417877,+!p2@ZNF30!0.40!2.66!ZNF30;;chr19:57999082..57999095,+!p2@ZNF419!0.40!2.66!ZNF419;;chr1:156470323..156470332,-!p4@MEF2D!0.40!2.66!MEF2D;;chr4:26322373..26322393,+!p4@RBPJ!0.40!2.66!RBPJ;;chr19:20748620..20748630,-!p3@ZNF737!0.40!1.77!ZNF737;;chr7:14028488..14028516,-!p2@ETV1!0.40!1.77!ETV1;;chr19:39390697..39390713,+!p4@NFKBIB!0.40!1.77!NFKBIB;;chr1:170632959..170632987,+!p4@PRRX1!0.40!1.77!PRRX1;;chr1:235344971..235344985,-!p5@ARID4B!0.40!1.77!ARID4B;;chr17:35766967..35767022,+!p1@TADA2A!0.39!23.92!TADA2A;;chr8:116681194..116681214,-!p1@TRPS1!0.39!20.38!TRPS1;;chr4:146402997..146403020,+!p1@SMAD1!0.39!15.06!SMAD1;;chr17:17726907..17726958,-!p2@SREBF1!0.39!13.29!SREBF1;;chr7:64363638..64363667,+!p1@ZNF273!0.39!10.63!ZNF273;;chr19:37958086..37958150,-!p1@ZNF569!0.39!7.97!ZNF569;;chr8:102217679..102217719,-!p2@ZNF706!0.39!7.09!ZNF706;;chr10:44101850..44101896,+!p1@ZNF485!0.39!6.20!ZNF485;;chr16:4323015..4323067,-!p2@TFAP4!0.39!5.32!TFAP4;;chr19:35225078..35225120,+!p2@ZNF181!0.39!4.43!ZNF181;;chr16:79633894..79633954,-!p3@MAF!0.39!3.54!MAF;;chr11:8102749..8102769,+!p2@TUB!0.39!3.54!TUB;;chr8:123793959..123793977,+!p4@ZHX2!0.39!3.54!ZHX2;;chr3:178789622..178789633,-!p3@ZMAT3!0.39!3.54!ZMAT3;;chr2:101591314..101591333,+!p2@NPAS2!0.39!1.77!NPAS2;; | |expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.30!198.48!PEG3;;chr21:34442439..34442455,+!p1@OLIG1!2.23!170.13!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.21!160.38!TSC22D4;;chr9:114287433..114287513,+!p1@ZNF483!2.14!337.59!ZNF483;;chr17:53342311..53342400,+!p1@HLF!2.06!129.37!HLF;;chr9:77112244..77112262,+!p1@RORB!2.03!119.62!RORB;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!2.00!98.35!SMARCE1;;chr2:162272785..162272836,+!p1@TBR1!1.93!84.18!TBR1;;chrX:25034067..25034088,-!p1@ARX!1.92!81.52!ARX;;chr4:81118647..81118666,+!p1@PRDM8!1.91!105.44!PRDM8;;chr10:64134120..64134183,+!p1@ZNF365!1.91!94.81!ZNF365;;chr4:57547454..57547469,-!p1@HOPX!1.88!75.32!HOPX;;chr5:88178983..88179012,-!p1@MEF2C!1.86!515.69!MEF2C;;chr15:80733570..80733659,+!p2@ARNT2!1.84!68.23!ARNT2;;chr2:2334997..2335053,-!p1@MYT1L!1.82!64.68!MYT1L;;chr15:80735246..80735321,+!p3@ARNT2!1.81!62.91!ARNT2;;chr3:181429704..181429722,+!p1@SOX2!1.75!55.82!SOX2;;chr2:166326200..166326216,+!p1@CSRNP3!1.71!72.66!CSRNP3;;chr21:34442540..34442560,+!p2@OLIG1!1.71!50.51!OLIG1;;chr14:29235961..29236008,+!p1@FOXG1!1.70!49.62!FOXG1;;chr2:95963052..95963106,+!p1@KCNIP3!1.70!48.73!KCNIP3;;chr8:40755333..40755352,-!p1@ZMAT4!1.70!48.73!ZMAT4;;chr17:37764128..37764258,-!p1@NEUROD2!1.70!48.73!NEUROD2;;chr18:53070846..53070902,-!p6@TCF4!1.70!48.73!TCF4;;chr19:13135582..13135600,+!p3@NFIX!1.67!46.08!NFIX;;chr7:31380292..31380351,-!p1@NEUROD6!1.64!42.53!NEUROD6;;chr10:48355030..48355090,+!p1@ZNF488!1.62!51.39!ZNF488;;chr2:60781201..60781258,-!p3@BCL11A!1.62!40.76!BCL11A;;chr19:13135386..13135435,+!p4@NFIX!1.56!35.44!NFIX;;chrX:85969626..85969664,+!p1@DACH2!1.56!35.44!DACH2;;chr22:38380543..38380569,-!p1@SOX10!1.54!33.67!SOX10;;chr2:95963120..95963136,+!p2@KCNIP3!1.53!32.78!KCNIP3;;chr10:64133862..64133884,+!p4@ZNF365!1.52!31.90!ZNF365;;chr11:113930425..113930471,+!p1@ZBTB16!1.50!43.42!ZBTB16;;chr12:106976774..106976788,+!p1@RFX4!1.49!30.13!RFX4;;chr19:57352109..57352153,-!p2@ZIM2!1.49!30.13!ZIM2;;chr7:63505799..63505904,+!p1@ZNF727!1.48!29.24!ZNF727;;chr5:88179017..88179046,-!p2@MEF2C!1.47!111.64!MEF2C;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.45!27.47!POU3F3;;chr11:125034640..125034655,+!p1@PKNOX2!1.44!26.58!PKNOX2;;chr11:61520075..61520136,+!p1@C11orf9!1.43!54.05!C11orf9;;chr15:80696703..80696754,+!p1@ARNT2!1.43!34.56!ARNT2;;chr19:38085768..38085821,+!p1@ZNF540!1.41!36.33!ZNF540;;chr3:181429741..181429767,+!p2@SOX2!1.41!24.81!SOX2;;chr4:57522598..57522664,-!p3@HOPX!1.40!23.92!HOPX;;chr10:119302232..119302265,+!p1@EMX2!1.40!23.92!EMX2;;chr11:8102846..8102892,+!p1@TUB!1.39!32.78!TUB;;chr3:141105705..141105770,+!p4@ZBTB38!1.39!28.35!ZBTB38;;chr14:33403881..33403924,+!p1@NPAS3!1.38!23.04!NPAS3;;chr1:151032860..151032918,+!p1@MLLT11!1.37!254.30!MLLT11;;chr9:126774018..126774055,+!p1@LHX2!1.36!22.15!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.36!22.15!LHX2;;chr12:106976678..106976708,+!p2@RFX4!1.35!21.27!RFX4;;chr21:34398234..34398250,+!p1@OLIG2!1.35!21.27!OLIG2;;chr18:53070913..53070933,-!p16@TCF4!1.33!20.38!TCF4;;chr2:192015750..192015793,-!p2@STAT4!1.32!26.58!STAT4;;chr4:57522166..57522260,-!p2@HOPX!1.32!23.04!HOPX;;chr2:180726291..180726311,-!p1@ZNF385B!1.31!19.49!ZNF385B;;chr19:46801639..46801699,+!p1@HIF3A!1.31!19.49!HIF3A;;chr17:7492684..7492778,-!p2@SOX15!1.30!39.87!SOX15;;chr12:26277817..26277863,-!p2@BHLHE41!1.29!24.81!BHLHE41;;chr10:31610110..31610159,+!p2@ZEB1!1.29!18.61!ZEB1;;chr2:162272889..162272915,+!p2@TBR1!1.29!18.61!TBR1;;chr3:24536253..24536328,-!p1@THRB!1.28!33.67!THRB;;chr2:145277882..145277967,-!p3@ZEB2!1.28!31.01!ZEB2;;chrX:118739835..118739862,-!p1@NKRF!1.27!19.49!NKRF;;chr14:29236269..29236285,+!p3@FOXG1!1.27!17.72!FOXG1;;chr11:125034605..125034636,+!p2@PKNOX2!1.25!16.84!PKNOX2;;chr14:29234581..29234601,+!p2@FOXG1!1.25!16.84!FOXG1;;chr3:141105235..141105307,+!p7@ZBTB38!1.25!16.84!ZBTB38;;chr8:53322304..53322340,-!p1@ST18!1.25!16.84!ST18;;chr2:166428839..166428859,+!p2@CSRNP3!1.23!15.95!CSRNP3;;chrX:118739782..118739829,-!p2@NKRF!1.23!15.95!NKRF;;chr16:1031762..1031781,+!p1@SOX8!1.21!15.06!SOX8;;chr12:26277956..26277980,-!p1@BHLHE41!1.18!50.51!BHLHE41;;chr15:31658288..31658338,+!p4@KLF13!1.18!14.18!KLF13;;chr9:126774058..126774081,+!p3@LHX2!1.18!14.18!LHX2;;chr1:151032922..151032951,+!p2@MLLT11!1.17!23.04!MLLT11;;chr17:70117153..70117174,+!p1@SOX9!1.16!138.23!SOX9;;chr19:38720294..38720348,-!p1@DPF1!1.16!16.84!DPF1;;chr21:34442584..34442587,+!p3@OLIG1!1.16!13.29!OLIG1;;chr10:64134045..64134083,+!p3@ZNF365!1.16!13.29!ZNF365;;chr5:138609489..138609542,+!p8@MATR3!1.16!13.29!MATR3;;chr6:15401104..15401166,+!p5@JARID2!1.16!13.29!JARID2;;chr2:166428861..166428883,+!p3@CSRNP3!1.16!13.29!CSRNP3;;chr2:60780753..60780800,-!p1@BCL11A!1.13!62.02!BCL11A;;chr2:60780607..60780624,-!p2@BCL11A!1.13!38.10!BCL11A;;chr1:151032782..151032801,+!p4@MLLT11!1.13!24.81!MLLT11;;chr11:113930291..113930339,+!p2@ZBTB16!1.13!20.38!ZBTB16;;chr11:31832862..31832884,-!p2@PAX6!1.13!12.40!PAX6;;chr12:103351444..103351461,+!p1@ASCL1!1.13!12.40!ASCL1;;chr14:58798013..58798071,+!p2@ARID4A!1.13!12.40!ARID4A;;chr22:41763452..41763466,+!p2@TEF!1.13!12.40!TEF;;chr2:172949484..172949522,+!p1@DLX1!1.13!12.40!DLX1;;chr3:24536332..24536358,-!p2@THRB!1.13!12.40!THRB;;chr1:151032142..151032195,+!p5@MLLT11!1.11!23.04!MLLT11;;chr1:214161272..214161322,+!p1@PROX1!1.11!16.84!PROX1;;chr2:2328725..2328739,-!p5@MYT1L!1.10!11.52!MYT1L;;chr2:2335070..2335098,-!p4@MYT1L!1.10!11.52!MYT1L;;chr11:31832658..31832681,-!p1@PAX6!1.10!11.52!PAX6;;chr19:13135566..13135577,+!p9@NFIX!1.10!11.52!NFIX;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.10!11.52!ZBED1;;chr5:92919375..92919438,+!p6@NR2F1!1.09!12.40!NR2F1;;chr10:38265517..38265591,-!p1@ZNF25!1.08!43.42!ZNF25;;chr12:54785074..54785122,-!p2@ZNF385A!1.08!16.84!ZNF385A;;chr5:92920256..92920282,+!p7@NR2F1!1.08!13.29!NR2F1;;chr6:126112039..126112062,+!p8@NCOA7!1.08!13.29!NCOA7;;chr20:62680984..62680999,-!p1@SOX18!1.07!14.18!SOX18;;chr3:126076242..126076257,-!p1@KLF15!1.07!13.29!KLF15;;chr2:172950227..172950249,+!p2@DLX1!1.07!10.63!DLX1;;chr19:46800289..46800327,+!p2@HIF3A!1.07!10.63!HIF3A;;chr7:73038839..73038862,-!p1@MLXIPL!1.07!10.63!MLXIPL;;chr14:58797974..58798011,+!p3@ARID4A!1.07!10.63!ARID4A;;chr1:151032739..151032748,+!p6@MLLT11!1.06!13.29!MLLT11;;chr17:4890919..4890985,-!p1@CAMTA2!1.05!97.47!CAMTA2;;chr14:75894391..75894435,+!p2@JDP2!1.04!11.52!JDP2;;chr20:3388541..3388575,-!p2@C20orf194!1.03!38.99!C20orf194;;chr5:178368186..178368238,+!p1@ZNF454!1.03!17.72!ZNF454;;chr8:145560371..145560449,-!p1@SCRT1!1.03!9.75!SCRT1;;chr11:113930401..113930422,+!p3@ZBTB16!1.03!9.75!ZBTB16;;chr14:33403648..33403710,+!p3@NPAS3!1.03!9.75!NPAS3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.03!9.75!POU3F3;;chr2:162273101..162273118,+!p7@TBR1!1.03!9.75!TBR1;;chr2:180726254..180726275,-!p4@ZNF385B!1.03!9.75!ZNF385B;;chr3:21792682..21792720,-!p1@ZNF385D!1.03!9.75!ZNF385D;;chr19:58545454..58545498,+!p1@ZSCAN1!1.03!9.75!ZSCAN1;;chr19:7580549..7580596,+!p3@ZNF358!1.03!9.75!ZNF358;;chr16:67198633..67198671,+!p1@HSF4!1.03!9.75!HSF4;;chr19:21512202..21512225,-!p1@ZNF708!1.01!48.73!ZNF708;;chr1:151032833..151032850,+!p3@MLLT11!1.01!21.27!MLLT11;;chr13:45010939..45011033,-!p1@TSC22D1!0.99!583.92!TSC22D1;;chr11:66188503..66188511,+!p1@NPAS4!0.99!8.86!NPAS4;;chr20:42544782..42544828,+!p4@TOX2!0.99!8.86!TOX2;;chr20:42574529..42574563,+!p3@TOX2!0.99!8.86!TOX2;;chr7:31380379..31380392,-!p2@NEUROD6!0.99!8.86!NEUROD6;;chr8:22550530..22550609,-!p2@EGR3!0.99!8.86!EGR3;;chr8:30890810..30890880,-!p1@PURG!0.99!8.86!PURG;;chr9:77112225..77112238,+!p2@RORB!0.99!8.86!RORB;;chr2:162273241..162273253,+!p4@TBR1!0.99!8.86!TBR1;;chr2:180726331..180726344,-!p5@ZNF385B!0.99!8.86!ZNF385B;;chr2:2330039..2330072,-!p6@MYT1L!0.99!8.86!MYT1L;;chr2:73520667..73520683,-!p1@EGR4!0.99!8.86!EGR4;;chr3:147127177..147127194,+!p2@ZIC1!0.99!8.86!ZIC1;;chr18:53068911..53068935,-!p4@TCF4!0.98!9.75!TCF4;;chrX:84499081..84499115,+!p2@ZNF711!0.97!12.40!ZNF711;;chr18:14132422..14132440,-!p1@ZNF519!0.97!11.52!ZNF519;;chr8:106330696..106330719,+!p2@ZFPM2!0.97!10.63!ZFPM2;;chr5:138629628..138629688,+!p2@MATR3!0.96!195.82!MATR3;;chr7:86781858..86781879,+!p3@DMTF1!0.96!13.29!DMTF1;;chr8:60031682..60031710,-!p2@TOX!0.96!13.29!TOX;;chr8:106330656..106330684,+!p1@ZFPM2!0.95!21.27!ZFPM2;;chr16:51185318..51185348,-!p2@SALL1!0.95!7.97!SALL1;;chr9:2159850..2159880,+!p14@SMARCA2!0.95!7.97!SMARCA2;;chr2:162272716..162272753,+!p3@TBR1!0.95!7.97!TBR1;;chr2:162273254..162273267,+!p6@TBR1!0.95!7.97!TBR1;;chr2:162273893..162273908,+!p12@TBR1!0.95!7.97!TBR1;;chr15:61521417..61521460,-!p2@RORA!0.94!17.72!RORA;;chr8:60031762..60031803,-!p3@TOX!0.94!11.52!TOX;;chr11:8102819..8102845,+!p3@TUB!0.94!9.75!TUB;;chr19:53636125..53636178,-!p1@ZNF415!0.93!22.15!ZNF415;;chr8:60031619..60031676,-!p1@TOX!0.93!16.84!TOX;;chr5:88179230..88179270,-!p4@MEF2C!0.93!15.06!MEF2C;;chr19:38183208..38183225,-!p1@ZNF781!0.93!9.75!ZNF781;;chr9:14314131..14314147,-!p2@NFIB!0.92!42.53!NFIB;;chr2:200323414..200323455,-!p1@SATB2!0.92!15.95!SATB2;;chr2:162273196..162273210,+!p5@TBR1!0.91!7.09!TBR1;;chr2:42721205..42721307,+!p4@MTA3!0.91!7.09!MTA3;;chr2:73144617..73144654,+!p1@EMX1!0.91!7.09!EMX1;;chr5:88081308..88081333,-!p8@MEF2C!0.91!7.09!MEF2C;;chr7:31380502..31380515,-!p3@NEUROD6!0.91!7.09!NEUROD6;;chr8:145560111..145560165,-!p2@SCRT1!0.91!7.09!SCRT1;;chr9:124976328..124976372,-!p2@LHX6!0.91!7.09!LHX6;;chr15:61521462..61521482,-!p4@RORA!0.91!7.09!RORA;;chr19:13135731..13135787,+!p10@NFIX!0.91!7.09!NFIX;;chr12:103352277..103352324,+!p2@ASCL1!0.91!7.09!ASCL1;;chr12:54779511..54779577,-!p5@ZNF385A!0.91!7.09!ZNF385A;;chrX:102000987..102001029,+!p3@BHLHB9!0.91!7.09!BHLHB9;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.09!NPAS1;;chr1:217263131..217263207,-!p4@ESRRG!0.91!7.09!ESRRG;;chr21:39870339..39870443,-!p1@ERG!0.91!7.09!ERG;;chr3:18466787..18466839,-!p1@SATB1!0.90!32.78!SATB1;;chr1:8585945..8586056,-!p3@RERE!0.90!23.92!RERE;;chr1:244219775..244219893,+!p2@ZNF238!0.90!9.75!ZNF238;;chr12:54785054..54785072,-!p4@ZNF385A!0.90!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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000200;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001870;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002702;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10170-103B8 | |id=FF:10170-103B8 | ||
|is_a=FF:0000004;;FF:0000210;;UBERON:0002702;;UBERON:0007023 | |is_a=FF:0000004;;FF:0000210;;UBERON:0002702;;UBERON:0007023 | ||
|is_obsolete= | |||
|library_id=CNhs13796 | |||
|library_id_phase_based=2:CNhs13796 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10170 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10170 | |||
|name=medial frontal gyrus - adult, donor10196 | |name=medial frontal gyrus - adult, donor10196 | ||
|namespace= | |namespace= | ||
| Line 44: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=73.872 | |rna_weight_ug=73.872 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 100: | ||
|sample_tissue=medial frontal gyrus | |sample_tissue=medial frontal gyrus | ||
|top_motifs=REST:3.84545321499;DBP:3.81859156824;CUX2:3.7793412588;AHR_ARNT_ARNT2:3.56084025405;HOXA9_MEIS1:3.54329798001;ALX1:3.47064498332;FOXM1:3.42476012412;PRRX1,2:3.41505757918;MYFfamily:3.37601402099;NHLH1,2:3.31138488845;PAX4:2.96685078489;ZFP161:2.91108580876;ZBTB6:2.87918538548;PRDM1:2.81199649804;EGR1..3:2.79386506918;MTE{core}:2.77682656593;OCT4_SOX2{dimer}:2.75925709074;MED-1{core}:2.73950315323;MTF1:2.66162560826;RFX1:2.55906497362;ATF2:2.55595144715;NKX3-2:2.54836695308;PAX6:2.53704882334;ARID5B:2.51711921939;RREB1:2.47201295929;GATA4:2.40756016503;POU6F1:2.31533650987;JUN:2.23943651892;PAX5:2.10157755318;HOX{A4,D4}:2.05819196466;FOXQ1:2.02203921703;GTF2I:2.00232274179;POU1F1:1.9684342728;CDC5L:1.95181322628;POU5F1:1.92773051636;NKX2-3_NKX2-5:1.91480106264;MZF1:1.91064058507;KLF4:1.88292160786;POU3F1..4:1.77943793677;GFI1B:1.77924096884;NRF1:1.77844219955;BREu{core}:1.77318314822;RFX2..5_RFXANK_RFXAP:1.74933402428;TFAP2B:1.65569267537;TGIF1:1.62943810273;SOX17:1.61910026113;ESRRA:1.56640416679;HMGA1,2:1.54531047588;LEF1_TCF7_TCF7L1,2:1.53733454483;LMO2:1.53420316849;HBP1_HMGB_SSRP1_UBTF:1.53204223241;HIC1:1.5086737026;TFDP1:1.43117052173;ZNF384:1.40286977326;SOX{8,9,10}:1.39623667033;MAFB:1.38821003157;TEF:1.37883248782;SMAD1..7,9:1.35348444031;CRX:1.32502316108;SOX2:1.32230612668;HAND1,2:1.32008766359;SOX5:1.27914852739;MYOD1:1.27234317115;FOXL1:1.26853666982;PAX1,9:1.2281567727;MAZ:1.20697469555;NKX6-1,2:1.15859569857;IKZF2:1.1259012892;PATZ1:1.11023965359;NFIX:1.10932561014;RORA:1.08364480208;NFIL3:1.06061655733;FOXP1:1.02728617641;FOXD3:1.00685923878;PAX8:0.976406359485;NANOG:0.968329373062;XBP1:0.967803163;ZBTB16:0.966752879678;NR3C1:0.961172773526;ONECUT1,2:0.961013597722;CREB1:0.933086552606;BPTF:0.87548368837;FOX{F1,F2,J1}:0.864286670912;STAT1,3:0.823253320646;FOXP3:0.78581082845;ZEB1:0.768194374982;RBPJ:0.708032815631;ZNF143:0.694453936457;YY1:0.691282438175;TLX2:0.661287428503;GCM1,2:0.608062915781;MEF2{A,B,C,D}:0.527200387978;ADNP_IRX_SIX_ZHX:0.501372578105;SREBF1,2:0.485830846445;ATF4:0.464533597342;ATF5_CREB3:0.452762887444;UFEwm:0.422647277164;EP300:0.351704735503;LHX3,4:0.341818360415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.315491433711;PAX2:0.312710492346;EBF1:0.29316701014;HMX1:0.277215038224;GTF2A1,2:0.269257843915;IKZF1:0.263377663706;FOXN1:0.259902621237;GZF1:0.25598061686;GFI1:0.19915444842;ZIC1..3:0.182415381778;SPZ1:0.17762783964;TBX4,5:0.141384405882;ZNF238:0.105067249802;MYBL2:0.100170981369;FOX{D1,D2}:0.0785252493351;STAT2,4,6:0.0752305379739;AIRE:0.0643146015505;NFE2L1:0.0475261891059;EVI1:0.0135770632246;DMAP1_NCOR{1,2}_SMARC:0.00287150372035;AR:-0.00192741261789;TLX1..3_NFIC{dimer}:-0.0175547144445;IRF7:-0.0366585780576;NFE2L2:-0.0480377992673;PAX3,7:-0.0856404215727;SNAI1..3:-0.0947105875377;TOPORS:-0.114644505705;HOX{A6,A7,B6,B7}:-0.148258854638;ATF6:-0.16633624285;ZNF423:-0.171732411416;HSF1,2:-0.185885014837;PBX1:-0.232913737003;NFATC1..3:-0.304983624585;VSX1,2:-0.312079182473;NFY{A,B,C}:-0.316574364719;bHLH_family:-0.32433315914;NKX3-1:-0.329796389177;T:-0.343737233847;FOX{I1,J2}:-0.345739623996;SP1:-0.353072188934;CEBPA,B_DDIT3:-0.377699563458;NANOG{mouse}:-0.391333361959;PDX1:-0.406053955207;NFE2:-0.438755820768;GATA6:-0.453354851201;FOXA2:-0.476754150901;TFAP2{A,C}:-0.515823143766;SPI1:-0.537605526273;CDX1,2,4:-0.58342433059;IRF1,2:-0.646455645698;NR1H4:-0.710342109168;HNF1A:-0.784389347862;SPIB:-0.839064122796;HIF1A:-0.85806873001;FOSL2:-0.885427508033;BACH2:-0.898708493532;FOXO1,3,4:-0.962967957427;NR5A1,2:-0.991070309108;FOS_FOS{B,L1}_JUN{B,D}:-0.995841676502;RXRA_VDR{dimer}:-1.10365356633;ETS1,2:-1.10903787911;HNF4A_NR2F1,2:-1.11722433201;XCPE1{core}:-1.13116983307;RXR{A,B,G}:-1.1544164509;TP53:-1.16874206194;TEAD1:-1.17398713528;RUNX1..3:-1.21156580222;TAL1_TCF{3,4,12}:-1.22680017336;TBP:-1.25666201714;GLI1..3:-1.25843169835;NFKB1_REL_RELA:-1.27259723609;HOX{A5,B5}:-1.3076611939;POU2F1..3:-1.31016558352;E2F1..5:-1.31084729288;NKX2-2,8:-1.33057849262;PITX1..3:-1.34237949017;ELK1,4_GABP{A,B1}:-1.35528336448;HLF:-1.42266887068;MYB:-1.45484172509;ELF1,2,4:-1.47359357078;ZNF148:-1.48354594408;HES1:-1.57287923997;ESR1:-1.59387718262;ALX4:-1.6272846532;TFAP4:-1.64691864737;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.72423113693;PPARG:-1.74167165186;STAT5{A,B}:-1.80621582645;SRF:-1.87193073221;TFCP2:-1.89487464858;NKX2-1,4:-1.9695746773;EN1,2:-2.37037036744;NR6A1:-2.57077146356 | |top_motifs=REST:3.84545321499;DBP:3.81859156824;CUX2:3.7793412588;AHR_ARNT_ARNT2:3.56084025405;HOXA9_MEIS1:3.54329798001;ALX1:3.47064498332;FOXM1:3.42476012412;PRRX1,2:3.41505757918;MYFfamily:3.37601402099;NHLH1,2:3.31138488845;PAX4:2.96685078489;ZFP161:2.91108580876;ZBTB6:2.87918538548;PRDM1:2.81199649804;EGR1..3:2.79386506918;MTE{core}:2.77682656593;OCT4_SOX2{dimer}:2.75925709074;MED-1{core}:2.73950315323;MTF1:2.66162560826;RFX1:2.55906497362;ATF2:2.55595144715;NKX3-2:2.54836695308;PAX6:2.53704882334;ARID5B:2.51711921939;RREB1:2.47201295929;GATA4:2.40756016503;POU6F1:2.31533650987;JUN:2.23943651892;PAX5:2.10157755318;HOX{A4,D4}:2.05819196466;FOXQ1:2.02203921703;GTF2I:2.00232274179;POU1F1:1.9684342728;CDC5L:1.95181322628;POU5F1:1.92773051636;NKX2-3_NKX2-5:1.91480106264;MZF1:1.91064058507;KLF4:1.88292160786;POU3F1..4:1.77943793677;GFI1B:1.77924096884;NRF1:1.77844219955;BREu{core}:1.77318314822;RFX2..5_RFXANK_RFXAP:1.74933402428;TFAP2B:1.65569267537;TGIF1:1.62943810273;SOX17:1.61910026113;ESRRA:1.56640416679;HMGA1,2:1.54531047588;LEF1_TCF7_TCF7L1,2:1.53733454483;LMO2:1.53420316849;HBP1_HMGB_SSRP1_UBTF:1.53204223241;HIC1:1.5086737026;TFDP1:1.43117052173;ZNF384:1.40286977326;SOX{8,9,10}:1.39623667033;MAFB:1.38821003157;TEF:1.37883248782;SMAD1..7,9:1.35348444031;CRX:1.32502316108;SOX2:1.32230612668;HAND1,2:1.32008766359;SOX5:1.27914852739;MYOD1:1.27234317115;FOXL1:1.26853666982;PAX1,9:1.2281567727;MAZ:1.20697469555;NKX6-1,2:1.15859569857;IKZF2:1.1259012892;PATZ1:1.11023965359;NFIX:1.10932561014;RORA:1.08364480208;NFIL3:1.06061655733;FOXP1:1.02728617641;FOXD3:1.00685923878;PAX8:0.976406359485;NANOG:0.968329373062;XBP1:0.967803163;ZBTB16:0.966752879678;NR3C1:0.961172773526;ONECUT1,2:0.961013597722;CREB1:0.933086552606;BPTF:0.87548368837;FOX{F1,F2,J1}:0.864286670912;STAT1,3:0.823253320646;FOXP3:0.78581082845;ZEB1:0.768194374982;RBPJ:0.708032815631;ZNF143:0.694453936457;YY1:0.691282438175;TLX2:0.661287428503;GCM1,2:0.608062915781;MEF2{A,B,C,D}:0.527200387978;ADNP_IRX_SIX_ZHX:0.501372578105;SREBF1,2:0.485830846445;ATF4:0.464533597342;ATF5_CREB3:0.452762887444;UFEwm:0.422647277164;EP300:0.351704735503;LHX3,4:0.341818360415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.315491433711;PAX2:0.312710492346;EBF1:0.29316701014;HMX1:0.277215038224;GTF2A1,2:0.269257843915;IKZF1:0.263377663706;FOXN1:0.259902621237;GZF1:0.25598061686;GFI1:0.19915444842;ZIC1..3:0.182415381778;SPZ1:0.17762783964;TBX4,5:0.141384405882;ZNF238:0.105067249802;MYBL2:0.100170981369;FOX{D1,D2}:0.0785252493351;STAT2,4,6:0.0752305379739;AIRE:0.0643146015505;NFE2L1:0.0475261891059;EVI1:0.0135770632246;DMAP1_NCOR{1,2}_SMARC:0.00287150372035;AR:-0.00192741261789;TLX1..3_NFIC{dimer}:-0.0175547144445;IRF7:-0.0366585780576;NFE2L2:-0.0480377992673;PAX3,7:-0.0856404215727;SNAI1..3:-0.0947105875377;TOPORS:-0.114644505705;HOX{A6,A7,B6,B7}:-0.148258854638;ATF6:-0.16633624285;ZNF423:-0.171732411416;HSF1,2:-0.185885014837;PBX1:-0.232913737003;NFATC1..3:-0.304983624585;VSX1,2:-0.312079182473;NFY{A,B,C}:-0.316574364719;bHLH_family:-0.32433315914;NKX3-1:-0.329796389177;T:-0.343737233847;FOX{I1,J2}:-0.345739623996;SP1:-0.353072188934;CEBPA,B_DDIT3:-0.377699563458;NANOG{mouse}:-0.391333361959;PDX1:-0.406053955207;NFE2:-0.438755820768;GATA6:-0.453354851201;FOXA2:-0.476754150901;TFAP2{A,C}:-0.515823143766;SPI1:-0.537605526273;CDX1,2,4:-0.58342433059;IRF1,2:-0.646455645698;NR1H4:-0.710342109168;HNF1A:-0.784389347862;SPIB:-0.839064122796;HIF1A:-0.85806873001;FOSL2:-0.885427508033;BACH2:-0.898708493532;FOXO1,3,4:-0.962967957427;NR5A1,2:-0.991070309108;FOS_FOS{B,L1}_JUN{B,D}:-0.995841676502;RXRA_VDR{dimer}:-1.10365356633;ETS1,2:-1.10903787911;HNF4A_NR2F1,2:-1.11722433201;XCPE1{core}:-1.13116983307;RXR{A,B,G}:-1.1544164509;TP53:-1.16874206194;TEAD1:-1.17398713528;RUNX1..3:-1.21156580222;TAL1_TCF{3,4,12}:-1.22680017336;TBP:-1.25666201714;GLI1..3:-1.25843169835;NFKB1_REL_RELA:-1.27259723609;HOX{A5,B5}:-1.3076611939;POU2F1..3:-1.31016558352;E2F1..5:-1.31084729288;NKX2-2,8:-1.33057849262;PITX1..3:-1.34237949017;ELK1,4_GABP{A,B1}:-1.35528336448;HLF:-1.42266887068;MYB:-1.45484172509;ELF1,2,4:-1.47359357078;ZNF148:-1.48354594408;HES1:-1.57287923997;ESR1:-1.59387718262;ALX4:-1.6272846532;TFAP4:-1.64691864737;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.72423113693;PPARG:-1.74167165186;STAT5{A,B}:-1.80621582645;SRF:-1.87193073221;TFCP2:-1.89487464858;NKX2-1,4:-1.9695746773;EN1,2:-2.37037036744;NR6A1:-2.57077146356 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10170-103B8;search_select_hide=table117:FF:10170-103B8 | |||
}} | }} | ||
Latest revision as of 12:24, 3 June 2020
| Name: | medial frontal gyrus - adult, donor10196 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13796 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13796
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13796
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0852 |
| 10 | 10 | 0.0581 |
| 100 | 100 | 0.329 |
| 101 | 101 | 0.483 |
| 102 | 102 | 0.839 |
| 103 | 103 | 0.352 |
| 104 | 104 | 0.109 |
| 105 | 105 | 0.0509 |
| 106 | 106 | 0.0277 |
| 107 | 107 | 0.0626 |
| 108 | 108 | 0.997 |
| 109 | 109 | 0.00288 |
| 11 | 11 | 0.0195 |
| 110 | 110 | 0.054 |
| 111 | 111 | 0.35 |
| 112 | 112 | 0.653 |
| 113 | 113 | 0.438 |
| 114 | 114 | 0.387 |
| 115 | 115 | 0.999 |
| 116 | 116 | 0.091 |
| 117 | 117 | 0.00835 |
| 118 | 118 | 0.123 |
| 119 | 119 | 0.273 |
| 12 | 12 | 0.41 |
| 120 | 120 | 0.313 |
| 121 | 121 | 0.167 |
| 122 | 122 | 0.981 |
| 123 | 123 | 0.619 |
| 124 | 124 | 0.00699 |
| 125 | 125 | 0.428 |
| 126 | 126 | 0.0105 |
| 127 | 127 | 0.588 |
| 128 | 128 | 0.218 |
| 129 | 129 | 0.595 |
| 13 | 13 | 3.05299e-4 |
| 130 | 130 | 0.0537 |
| 131 | 131 | 0.105 |
| 132 | 132 | 0.839 |
| 133 | 133 | 0.00315 |
| 134 | 134 | 0.67 |
| 135 | 135 | 0.164 |
| 136 | 136 | 4.88254e-4 |
| 137 | 137 | 0.711 |
| 138 | 138 | 0.779 |
| 139 | 139 | 0.164 |
| 14 | 14 | 0.744 |
| 140 | 140 | 0.47 |
| 141 | 141 | 0.94 |
| 142 | 142 | 0.666 |
| 143 | 143 | 0.0982 |
| 144 | 144 | 0.917 |
| 145 | 145 | 0.0814 |
| 146 | 146 | 0.244 |
| 147 | 147 | 0.451 |
| 148 | 148 | 0.448 |
| 149 | 149 | 0.221 |
| 15 | 15 | 0.116 |
| 150 | 150 | 0.122 |
| 151 | 151 | 0.634 |
| 152 | 152 | 0.0589 |
| 153 | 153 | 0.896 |
| 154 | 154 | 0.442 |
| 155 | 155 | 0.766 |
| 156 | 156 | 0.309 |
| 157 | 157 | 0.425 |
| 158 | 158 | 0.384 |
| 159 | 159 | 0.0727 |
| 16 | 16 | 0.0594 |
| 160 | 160 | 0.268 |
| 161 | 161 | 0.156 |
| 162 | 162 | 0.657 |
| 163 | 163 | 0.687 |
| 164 | 164 | 0.0168 |
| 165 | 165 | 0.031 |
| 166 | 166 | 0.935 |
| 167 | 167 | 0.821 |
| 168 | 168 | 0.352 |
| 169 | 169 | 0.0125 |
| 17 | 17 | 0.154 |
| 18 | 18 | 0.23 |
| 19 | 19 | 0.161 |
| 2 | 2 | 0.688 |
| 20 | 20 | 0.101 |
| 21 | 21 | 0.0863 |
| 22 | 22 | 0.139 |
| 23 | 23 | 0.442 |
| 24 | 24 | 0.0319 |
| 25 | 25 | 0.506 |
| 26 | 26 | 3.10475e-5 |
| 27 | 27 | 0.956 |
| 28 | 28 | 0.619 |
| 29 | 29 | 0.0147 |
| 3 | 3 | 0.0493 |
| 30 | 30 | 0.967 |
| 31 | 31 | 0.895 |
| 32 | 32 | 0.0314 |
| 33 | 33 | 0.0566 |
| 34 | 34 | 0.458 |
| 35 | 35 | 0.871 |
| 36 | 36 | 0.265 |
| 37 | 37 | 0.0468 |
| 38 | 38 | 0.347 |
| 39 | 39 | 0.156 |
| 4 | 4 | 0.99 |
| 40 | 40 | 0.0353 |
| 41 | 41 | 0.393 |
| 42 | 42 | 0.25 |
| 43 | 43 | 0.0992 |
| 44 | 44 | 0.302 |
| 45 | 45 | 0.579 |
| 46 | 46 | 0.105 |
| 47 | 47 | 0.0867 |
| 48 | 48 | 0.044 |
| 49 | 49 | 0.214 |
| 5 | 5 | 0.71 |
| 50 | 50 | 0.149 |
| 51 | 51 | 0.501 |
| 52 | 52 | 0.354 |
| 53 | 53 | 0.929 |
| 54 | 54 | 0.406 |
| 55 | 55 | 0.392 |
| 56 | 56 | 0.498 |
| 57 | 57 | 0.449 |
| 58 | 58 | 0.423 |
| 59 | 59 | 0.0528 |
| 6 | 6 | 0.828 |
| 60 | 60 | 0.0456 |
| 61 | 61 | 0.0323 |
| 62 | 62 | 0.293 |
| 63 | 63 | 0.104 |
| 64 | 64 | 0.364 |
| 65 | 65 | 0.305 |
| 66 | 66 | 0.14 |
| 67 | 67 | 0.374 |
| 68 | 68 | 0.233 |
| 69 | 69 | 0.388 |
| 7 | 7 | 0.0388 |
| 70 | 70 | 0.0616 |
| 71 | 71 | 0.00984 |
| 72 | 72 | 0.389 |
| 73 | 73 | 0.022 |
| 74 | 74 | 0.883 |
| 75 | 75 | 0.0401 |
| 76 | 76 | 0.519 |
| 77 | 77 | 0.136 |
| 78 | 78 | 0.00159 |
| 79 | 79 | 0.253 |
| 8 | 8 | 0.0928 |
| 80 | 80 | 0.492 |
| 81 | 81 | 0.952 |
| 82 | 82 | 0.901 |
| 83 | 83 | 0.0319 |
| 84 | 84 | 0.557 |
| 85 | 85 | 0.368 |
| 86 | 86 | 0.187 |
| 87 | 87 | 1.72279e-4 |
| 88 | 88 | 0.878 |
| 89 | 89 | 0.794 |
| 9 | 9 | 0.287 |
| 90 | 90 | 0.411 |
| 91 | 91 | 0.825 |
| 92 | 92 | 0.809 |
| 93 | 93 | 0.746 |
| 94 | 94 | 0.246 |
| 95 | 95 | 0.0131 |
| 96 | 96 | 0.87 |
| 97 | 97 | 0.577 |
| 98 | 98 | 0.379 |
| 99 | 99 | 0.598 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13796
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
FF:0000004 tissue sample
FF:0000210 human sample
UBERON:0002702 middle frontal gyrus
UBERON:0007023 adult organism
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000200 (gyrus)
0001870 (frontal cortex)
0000956 (cerebral cortex)
0000479 (tissue)
0002702 (middle frontal gyrus)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000004 (tissue sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
