FF:10494-107B8: Difference between revisions

Latest revision as of 14:27, 3 June 2020

Name:	mesothelioma cell line:ACC-MESO-4
Species:	Human (Homo sapiens)
Library ID:	CNhs11264
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	mesothelium
dev stage	NA
sex	male
age	59
cell type	mesothelial cell
cell line	ACC-MESO-4
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005932

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11264		CAGE		DRX007937		DRR008809

Accession ID Hg19

Library id		BAM		CTSS
CNhs11264		DRZ000234		DRZ001619

Accession ID Hg38

Library id		BAM		CTSS
CNhs11264		DRZ011584		DRZ012969

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.387
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	1.053
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0213
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0611
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0844
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.123
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.201
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0844
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.00825
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0844
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.278
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0844
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0844
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0844
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11264

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00834
MA0003.1	MA0003.1	0.545
MA0004.1	MA0004.1	0.771
MA0006.1	MA0006.1	0.104
MA0007.1	MA0007.1	0.113
MA0009.1	MA0009.1	0.975
MA0014.1	MA0014.1	0.472
MA0017.1	MA0017.1	0.581
MA0018.2	MA0018.2	0.625
MA0019.1	MA0019.1	0.583
MA0024.1	MA0024.1	5.00264e-4
MA0025.1	MA0025.1	0.29
MA0027.1	MA0027.1	0.536
MA0028.1	MA0028.1	0.0844
MA0029.1	MA0029.1	0.435
MA0030.1	MA0030.1	0.32
MA0031.1	MA0031.1	0.195
MA0035.2	MA0035.2	7.76258e-4
MA0038.1	MA0038.1	0.144
MA0039.2	MA0039.2	0.957
MA0040.1	MA0040.1	0.455
MA0041.1	MA0041.1	0.336
MA0042.1	MA0042.1	0.634
MA0043.1	MA0043.1	0.674
MA0046.1	MA0046.1	0.243
MA0047.2	MA0047.2	0.0634
MA0048.1	MA0048.1	0.0651
MA0050.1	MA0050.1	3.34703e-7
MA0051.1	MA0051.1	4.00778e-8
MA0052.1	MA0052.1	0.0114
MA0055.1	MA0055.1	0.0015
MA0057.1	MA0057.1	0.614
MA0058.1	MA0058.1	0.884
MA0059.1	MA0059.1	0.661
MA0060.1	MA0060.1	3.62764e-4
MA0061.1	MA0061.1	0.926
MA0062.2	MA0062.2	0.435
MA0065.2	MA0065.2	0.729
MA0066.1	MA0066.1	0.427
MA0067.1	MA0067.1	0.556
MA0068.1	MA0068.1	0.765
MA0069.1	MA0069.1	0.62
MA0070.1	MA0070.1	0.201
MA0071.1	MA0071.1	0.589
MA0072.1	MA0072.1	0.757
MA0073.1	MA0073.1	0.827
MA0074.1	MA0074.1	0.181
MA0076.1	MA0076.1	0.18
MA0077.1	MA0077.1	0.937
MA0078.1	MA0078.1	0.419
MA0079.2	MA0079.2	0.659
MA0080.2	MA0080.2	2.59905e-8
MA0081.1	MA0081.1	0.0197
MA0083.1	MA0083.1	0.681
MA0084.1	MA0084.1	0.552
MA0087.1	MA0087.1	0.725
MA0088.1	MA0088.1	0.217
MA0090.1	MA0090.1	3.98869e-14
MA0091.1	MA0091.1	0.102
MA0092.1	MA0092.1	0.298
MA0093.1	MA0093.1	0.92
MA0099.2	MA0099.2	0.0316
MA0100.1	MA0100.1	0.473
MA0101.1	MA0101.1	0.177
MA0102.2	MA0102.2	0.94
MA0103.1	MA0103.1	0.00392
MA0104.2	MA0104.2	0.202
MA0105.1	MA0105.1	0.422
MA0106.1	MA0106.1	0.0376
MA0107.1	MA0107.1	0.159
MA0108.2	MA0108.2	0.638
MA0111.1	MA0111.1	0.814
MA0112.2	MA0112.2	0.278
MA0113.1	MA0113.1	0.94
MA0114.1	MA0114.1	0.498
MA0115.1	MA0115.1	0.896
MA0116.1	MA0116.1	0.368
MA0117.1	MA0117.1	0.804
MA0119.1	MA0119.1	0.366
MA0122.1	MA0122.1	0.636
MA0124.1	MA0124.1	0.111
MA0125.1	MA0125.1	0.557
MA0131.1	MA0131.1	0.816
MA0135.1	MA0135.1	0.00785
MA0136.1	MA0136.1	8.76318e-6
MA0137.2	MA0137.2	2.29314e-4
MA0138.2	MA0138.2	0.0014
MA0139.1	MA0139.1	0.738
MA0140.1	MA0140.1	0.114
MA0141.1	MA0141.1	0.0268
MA0142.1	MA0142.1	0.0528
MA0143.1	MA0143.1	0.012
MA0144.1	MA0144.1	0.119
MA0145.1	MA0145.1	0.397
MA0146.1	MA0146.1	0.849
MA0147.1	MA0147.1	0.269
MA0148.1	MA0148.1	0.536
MA0149.1	MA0149.1	0.994
MA0150.1	MA0150.1	0.00851
MA0152.1	MA0152.1	0.828
MA0153.1	MA0153.1	0.44
MA0154.1	MA0154.1	0.256
MA0155.1	MA0155.1	0.435
MA0156.1	MA0156.1	0.153
MA0157.1	MA0157.1	0.155
MA0159.1	MA0159.1	0.974
MA0160.1	MA0160.1	0.301
MA0162.1	MA0162.1	0.414
MA0163.1	MA0163.1	0.0677
MA0164.1	MA0164.1	0.36
MA0258.1	MA0258.1	0.355
MA0259.1	MA0259.1	0.0449

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11264

Novel motif	Logo	P-value
1	1	0.985
10	10	0.289
100	100	0.364
101	101	0.818
102	102	0.498
103	103	0.179
104	104	0.878
105	105	0.769
106	106	0.73
107	107	0.211
108	108	0.864
109	109	0.924
11	11	0.531
110	110	0.18
111	111	0.107
112	112	0.263
113	113	0.0809
114	114	0.215
115	115	0.741
116	116	0.79
117	117	0.991
118	118	0.57
119	119	0.761
12	12	0.583
120	120	0.593
121	121	0.566
122	122	0.874
123	123	0.139
124	124	0.765
125	125	0.154
126	126	0.482
127	127	0.404
128	128	0.995
129	129	0.543
13	13	0.0939
130	130	0.368
131	131	0.893
132	132	0.544
133	133	0.0107
134	134	0.777
135	135	0.00541
136	136	0.112
137	137	0.0249
138	138	0.568
139	139	0.00826
14	14	0.486
140	140	0.0967
141	141	0.504
142	142	0.876
143	143	0.0256
144	144	0.714
145	145	0.885
146	146	0.746
147	147	0.618
148	148	0.964
149	149	0.311
15	15	0.323
150	150	0.0277
151	151	0.594
152	152	0.00732
153	153	0.126
154	154	0.762
155	155	0.56
156	156	0.521
157	157	0.156
158	158	0.251
159	159	0.902
16	16	0.548
160	160	0.806
161	161	0.534
162	162	0.773
163	163	0.353
164	164	0.47
165	165	0.052
166	166	0.454
167	167	0.134
168	168	0.0435
169	169	0.257
17	17	0.956
18	18	0.268
19	19	0.0977
2	2	0.974
20	20	0.129
21	21	0.38
22	22	0.597
23	23	0.326
24	24	0.737
25	25	0.269
26	26	0.837
27	27	0.192
28	28	0.106
29	29	0.923
3	3	0.734
30	30	0.626
31	31	0.159
32	32	0.173
33	33	0.4
34	34	0.756
35	35	0.184
36	36	0.246
37	37	0.659
38	38	0.817
39	39	0.261
4	4	0.612
40	40	0.811
41	41	1.94563e-4
42	42	0.608
43	43	0.217
44	44	0.0258
45	45	0.459
46	46	0.266
47	47	0.973
48	48	0.928
49	49	0.25
5	5	0.153
50	50	0.792
51	51	0.722
52	52	0.419
53	53	0.579
54	54	0.934
55	55	0.5
56	56	0.605
57	57	0.25
58	58	0.0413
59	59	0.617
6	6	0.849
60	60	0.302
61	61	0.451
62	62	0.0455
63	63	0.941
64	64	0.928
65	65	0.211
66	66	0.021
67	67	0.727
68	68	0.433
69	69	0.792
7	7	0.495
70	70	0.9
71	71	0.484
72	72	0.896
73	73	0.19
74	74	0.592
75	75	0.522
76	76	0.882
77	77	0.0981
78	78	0.302
79	79	0.375
8	8	0.169
80	80	0.176
81	81	0.484
82	82	0.176
83	83	0.0585
84	84	0.355
85	85	0.282
86	86	0.643
87	87	0.0287
88	88	0.622
89	89	0.92
9	9	0.336
90	90	0.516
91	91	0.109
92	92	0.111
93	93	0.578
94	94	0.503
95	95	0.661
96	96	0.37
97	97	0.2
98	98	0.0705
99	99	0.497

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11264

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102219 adrenocortical carcinoma cell
FF:0102424 mesothelioma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000150 (glandular epithelial cell)
0000163 (endocrine cell)
0000215 (barrier cell)
0000174 (steroid hormone secreting cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
0002097 (cortical cell of adrenal gland)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
170 (endocrine gland cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002369 (adrenal gland)
0002100 (trunk)
0001851 (cortex)
0001235 (adrenal cortex)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0005172 (abdomen element)
0002530 (gland)
0006858 (adrenal/interrenal gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102219 (adrenocortical carcinoma cell)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005932
+|accession_numbers=CAGE;DRX007937;DRR008809;DRZ000234;DRZ001619;DRZ011584;DRZ012969
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002369,UBERON:0002100,UBERON:0001851,UBERON:0001235,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0005172,UBERON:0002530,UBERON:0006858,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0000916
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0002078,CL:0000150,CL:0000163,CL:0000215,CL:0000174,CL:0000255,CL:0000077,CL:0002097
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:61520075..61520136,+!p1@C11orf9!1.87!151.61!C11orf9;;chr15:83953397..83953425,-!p1@BNC1!1.76!65.19!BNC1;;chr6:19837592..19837621,+!p1@ID4!1.73!305.36!ID4;;chr18:19749541..19749557,+!p1@GATA6!1.63!126.52!GATA6;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.60!38.81!SEBOX;;chr8:37963466..37963506,+!p3@ASH2L!1.59!46.53!ASH2L;;chr19:45260775..45260838,+!p5@BCL3!1.57!46.75!BCL3;;chr11:32457075..32457095,-!p1@WT1!1.57!36.24!WT1;;chr6:10412392..10412409,-!p4@TFAP2A!1.49!33.88!TFAP2A;;chr8:55370487..55370503,+!p1@SOX17!1.43!25.95!SOX17;;chr6:85474299..85474324,-!p1@TBX18!1.42!44.39!TBX18;;chr17:46682321..46682362,-!p1@HOXB6!1.39!23.80!HOXB6;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.39!23.37!SEBOX;;chr6:126135900..126135924,+!p22@NCOA7!1.37!22.30!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.34!34.74!TFAP2A;;chr7:63505799..63505904,+!p1@ZNF727!1.33!20.37!ZNF727;;chr2:185463247..185463263,+!p1@ZNF804A!1.31!33.88!ZNF804A;;chr6:126240380..126240430,+!p2@NCOA7!1.26!43.75!NCOA7;;chr11:16627528..16627550,-!p7@SOX6!1.26!17.37!SOX6;;chr12:8186270..8186292,+!p3@FOXJ2!1.23!15.87!FOXJ2;;chr8:37963407..37963454,+!p2@ASH2L!1.20!44.17!ASH2L;;chr19:49864746..49864780,-!p2@TEAD2!1.20!20.37!TEAD2;;chr6:10415276..10415341,-!p2@TFAP2A!1.20!18.01!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.19!14.58!IRX2;;chr3:128206762..128206781,-!p2@GATA2!1.18!87.49!GATA2;;chr7:27196267..27196311,-!p1@HOXA7!1.17!13.72!HOXA7;;chr8:73921136..73921151,+!p2@TERF1!1.15!19.94!TERF1;;chr17:7493405..7493419,-!p1@SOX15!1.14!12.87!SOX15;;chr3:170076314..170076334,+!p2@SKIL!1.12!15.87!SKIL;;chr22:41763452..41763466,+!p2@TEF!1.12!12.22!TEF;;chr6:85473156..85473210,-!p2@TBX18!1.11!14.37!TBX18;;chr8:106330656..106330684,+!p1@ZFPM2!1.07!28.31!ZFPM2;;chr2:172967621..172967637,-!p1@DLX2!1.05!27.66!DLX2;;chr17:46688334..46688385,-!p1@HOXB7!1.05!14.80!HOXB7;;chr7:77428149..77428220,+!p1@PHTF2!1.04!100.79!PHTF2;;chr19:12203100..12203132,+!p1@ZNF788!1.03!19.94!ZNF788;;chr7:97840743..97840786,+!p1@BHLHA15!1.03!9.65!BHLHA15;;chr3:141747459..141747475,-!p1@TFDP2!1.02!79.34!TFDP2;;chr11:16629182..16629201,-!p10@SOX6!1.02!9.44!SOX6;;chr20:21494684..21494708,-!p1@NKX2-2!1.01!9.22!NKX2-2;;chr18:19749386..19749404,+!p2@GATA6!1.00!12.87!GATA6;;chr12:54393880..54393962,+!p1@HOXC9!1.00!9.01!HOXC9;;chr2:5832508..5832524,+!p1@SOX11!1.00!9.01!SOX11;;chr17:7492684..7492778,-!p2@SOX15!0.99!19.09!SOX15;;chr4:87857474..87857489,+!p7@AFF1!0.99!15.65!AFF1;;chr8:11561684..11561751,+!p1@GATA4!0.96!8.15!GATA4;;chr5:92918919..92918942,+!p1@NR2F1!0.95!36.46!NR2F1;;chr2:46524897..46524911,+!p2@EPAS1!0.95!22.52!EPAS1;;chr7:1577899..1577943,+!p3@MAFK!0.95!7.93!MAFK;;chr16:67881588..67881612,-!p2@CENPT!0.93!10.51!CENPT;;chr18:6414884..6414942,-!p1@L3MBTL4!0.93!9.44!L3MBTL4;;chr11:16629205..16629216,-!p16@SOX6!0.93!7.51!SOX6;;chr4:87928142..87928165,+!p5@AFF1!0.92!26.16!AFF1;;chr19:20844346..20844351,-!p2@ZNF626!0.92!9.22!ZNF626;;chr18:45663490..45663528,-!p2@ZBTB7C!0.92!7.29!ZBTB7C;;chr6:126240442..126240459,+!p4@NCOA7!0.91!9.22!NCOA7;;chr11:32457413..32457431,-!p2@WT1!0.91!7.08!WT1;;chr2:16080659..16080685,+!p1@MYCN!0.91!7.08!MYCN;;chr11:120107344..120107351,+!p1@POU2F3!0.90!8.58!POU2F3;;chr11:16629369..16629392,-!p5@SOX6!0.90!6.86!SOX6;;chr6:10412576..10412599,-!p5@TFAP2A!0.90!6.86!TFAP2A;;chr6:28321971..28321995,-!p1@ZNF323!0.90!6.86!ZNF323;;chr2:25475094..25475112,-!p3@DNMT3A!0.90!6.86!DNMT3A;;chr18:19749517..19749531,+!p3@GATA6!0.89!12.44!GATA6;;chr12:80084167..80084197,-!p5@PAWR!0.88!16.08!PAWR;;chr8:106330696..106330719,+!p2@ZFPM2!0.88!8.58!ZFPM2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!0.88!6.65!SEBOX;;chr19:50432453..50432468,+!p1@ATF5!0.87!378.70!ATF5;;chr13:73633131..73633149,+!p1@KLF5!0.87!73.12!KLF5;;chr6:126240356..126240379,+!p7@NCOA7!0.87!7.93!NCOA7;;chr19:54058073..54058088,+!p1@ZNF331!0.87!6.43!ZNF331;;chr20:21494654..21494678,-!p2@NKX2-2!0.86!6.22!NKX2-2;;chr7:27153454..27153469,-!p2@HOXA3!0.86!6.22!HOXA3;;chr9:100615499..100615519,+!p1@FOXE1!0.86!6.22!FOXE1;;chr20:42295745..42295765,+!p1@MYBL2!0.85!105.51!MYBL2;;chr6:168227611..168227624,+!p2@MLLT4!0.85!9.01!MLLT4;;chr3:114343768..114343822,-!p1@ZBTB20!0.84!27.66!ZBTB20;;chr6:168227552..168227609,+!p1@MLLT4!0.83!50.61!MLLT4;;chr12:80084737..80084763,-!p3@PAWR!0.83!22.95!PAWR;;chr3:141747441..141747452,-!p4@TFDP2!0.83!8.36!TFDP2;;chr3:128207349..128207386,-!p3@GATA2!0.83!5.79!GATA2;;chr6:10415484..10415508,-!p3@TFAP2A!0.83!5.79!TFAP2A;;chr21:38071430..38071456,+!p1@SIM2!0.83!5.79!SIM2;;chr9:14314476..14314487,-!p9@NFIB!0.83!5.79!NFIB;;chr14:21566731..21566836,-!p1@ZNF219!0.82!65.19!ZNF219;;chr20:50721803..50721857,-!p2@ZFP64!0.82!9.22!ZFP64;;chrY:21906594..21906622,-!p1@KDM5D!0.82!5.58!KDM5D;;chr14:38064429..38064486,-!p1@FOXA1!0.82!5.58!FOXA1;;chr7:64838786..64838809,+!p2@ZNF92!0.81!33.24!ZNF92;;chr7:149470641..149470694,-!p1@ZNF467!0.79!25.09!ZNF467;;chr5:134369905..134369972,-!p1@PITX1!0.79!8.15!PITX1;;chr6:85474198..85474212,-!p3@TBX18!0.79!5.15!TBX18;;chr11:32457103..32457123,-!p3@WT1!0.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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-4.CNhs11264.10494-107B8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-4.CNhs11264.10494-107B8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-4.CNhs11264.10494-107B8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-4.CNhs11264.10494-107B8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-4.CNhs11264.10494-107B8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10494-107B8
 |is_a=EFO:0002091;;FF:0000210;;FF:0102219;;FF:0102424
 |is_obsolete=
+|library_id=CNhs11264
+|library_id_phase_based=2:CNhs11264
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10494
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10494
 |name=mesothelioma cell line:ACC-MESO-4
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11264,LSID758,release018,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=107
@@ Line 62: / Line 78: @@
 |rna_weight_ug=29.10775
 |sample_age=59
+|sample_category=cell lines
 |sample_cell_catalog=RCB2293
 |sample_cell_line=ACC-MESO-4
@@ Line 83: / Line 100: @@
 |top_motifs=TEF:1.86611113454;TEAD1:1.64317456486;HMGA1,2:1.35322610276;NKX3-1:1.3343588388;HOXA9_MEIS1:1.32916222572;NR6A1:1.31115749297;EVI1:1.16934258039;EN1,2:1.11104125749;PAX8:1.10718624089;IRF7:1.06836625558;RBPJ:1.04024819452;TFDP1:1.03321263023;HSF1,2:0.981698334265;FOX{I1,J2}:0.94981699448;CRX:0.945198989368;STAT1,3:0.940365192995;ADNP_IRX_SIX_ZHX:0.938438575822;FOXP1:0.908740658119;E2F1..5:0.902031498323;SNAI1..3:0.90105142437;CDX1,2,4:0.852918767401;MAZ:0.843231518724;ZNF148:0.793718119266;TP53:0.780271850871;ZEB1:0.776448277913;FOXL1:0.775704288736;CDC5L:0.755435904807;IRF1,2:0.727837937568;STAT2,4,6:0.672994963367;MZF1:0.672474696867;TOPORS:0.670472059189;PAX4:0.664166978771;NFY{A,B,C}:0.63378884632;HOX{A5,B5}:0.613578514324;PITX1..3:0.539889668247;LMO2:0.536914701231;MYOD1:0.523784067891;SOX2:0.52304211296;TBX4,5:0.513611476087;NR3C1:0.483161858333;RXR{A,B,G}:0.477123563624;ZIC1..3:0.47490484978;HOX{A4,D4}:0.469910483231;NFIL3:0.454941159951;XCPE1{core}:0.429967903895;FOXQ1:0.427088256135;GATA6:0.413421312958;TLX2:0.413095173823;TLX1..3_NFIC{dimer}:0.411347653992;POU1F1:0.398340549342;ELK1,4_GABP{A,B1}:0.397298186155;EGR1..3:0.384678698346;T:0.376882286353;EP300:0.375595301838;RREB1:0.365841767768;FOXA2:0.35147200613;PRRX1,2:0.337214312831;bHLH_family:0.322420870638;IKZF2:0.306848078922;HES1:0.30578346972;LHX3,4:0.301492841168;GLI1..3:0.291755398104;FOXO1,3,4:0.279543933281;GTF2I:0.275707015314;ZNF143:0.26852545909;FOXM1:0.26830525482;CEBPA,B_DDIT3:0.247278020078;PDX1:0.221835649492;POU2F1..3:0.205767716064;AIRE:0.188839250141;TFAP2B:0.184226515248;SRF:0.176227594152;SOX17:0.159212927181;FOXP3:0.153107898729;MAFB:0.151574985433;OCT4_SOX2{dimer}:0.143123058171;PAX3,7:0.135679468429;STAT5{A,B}:0.13356900017;TAL1_TCF{3,4,12}:0.110602329686;GFI1:0.0854019662809;CUX2:0.0804004395356;FOX{F1,F2,J1}:0.0750583362831;LEF1_TCF7_TCF7L1,2:0.073878029628;FOXN1:0.0622938380174;ZBTB16:0.0579191197415;PAX5:0.0418345317982;HOX{A6,A7,B6,B7}:0.0387663005374;IKZF1:0.0383819825537;HNF1A:0.0370725942224;YY1:0.02762548512;ATF4:0.0162651569781;FOXD3:0.0155610617946;NKX3-2:0.011351841533;GFI1B:0.00908894621843;NFKB1_REL_RELA:0.000689249306636;ARID5B:-0.00372736296864;SP1:-0.0211524840192;MYBL2:-0.0233859179347;MTE{core}:-0.0261735649032;ZNF384:-0.0412082315621;PATZ1:-0.0468878453329;RORA:-0.0483634214066;SPZ1:-0.0488126444793;ZNF423:-0.0549356920848;POU3F1..4:-0.058842282951;RFX1:-0.061591641221;NKX2-1,4:-0.0684368423179;EBF1:-0.0839867475411;HBP1_HMGB_SSRP1_UBTF:-0.0846390052424;HNF4A_NR2F1,2:-0.0944627424456;NKX6-1,2:-0.0952178361532;NKX2-2,8:-0.114893278958;NRF1:-0.120588350996;TBP:-0.140402789974;FOS_FOS{B,L1}_JUN{B,D}:-0.159244700775;SREBF1,2:-0.160146381157;HIC1:-0.171270335233;PAX6:-0.172791583997;HAND1,2:-0.176595247759;NFATC1..3:-0.183244065355;XBP1:-0.200770026598;PRDM1:-0.201509909649;HLF:-0.206128386629;GZF1:-0.219632760213;ZBTB6:-0.221151059958;ATF5_CREB3:-0.228615695362;BACH2:-0.238113460223;SOX5:-0.241295653421;PAX1,9:-0.247572986279;NR1H4:-0.248204282623;TFCP2:-0.261051550343;ESR1:-0.262173831976;DBP:-0.26280255168;ONECUT1,2:-0.266804552569;NFE2L1:-0.270494446155;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.280710289762;ELF1,2,4:-0.362580879589;NFE2:-0.368435964429;NKX2-3_NKX2-5:-0.377566437087;PBX1:-0.379788881128;GCM1,2:-0.387793731512;FOSL2:-0.394175426508;JUN:-0.402799873795;MYB:-0.406935495657;MED-1{core}:-0.414215402428;SPI1:-0.423777207767;NR5A1,2:-0.424177675108;UFEwm:-0.42466319665;SMAD1..7,9:-0.440817162047;SOX{8,9,10}:-0.441859988811;POU5F1:-0.447313427557;ATF6:-0.45897511743;ESRRA:-0.460919822544;KLF4:-0.463773873755;RUNX1..3:-0.47235592938;ETS1,2:-0.476642737649;DMAP1_NCOR{1,2}_SMARC:-0.506570815245;AR:-0.513747989847;HIF1A:-0.51759384472;RXRA_VDR{dimer}:-0.524153016786;CREB1:-0.532579604949;TFAP2{A,C}:-0.538772700554;FOX{D1,D2}:-0.54016395352;AHR_ARNT_ARNT2:-0.549421496421;ZFP161:-0.559995596999;SPIB:-0.571538427738;RFX2..5_RFXANK_RFXAP:-0.575214606731;NFE2L2:-0.582175093609;NANOG:-0.588061414043;PAX2:-0.607853276029;MEF2{A,B,C,D}:-0.634125128451;ATF2:-0.636774962682;REST:-0.660885993505;BREu{core}:-0.687207624022;TGIF1:-0.689943341044;NFIX:-0.727042674837;POU6F1:-0.748244637364;MYFfamily:-0.756698260778;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.757119410878;BPTF:-0.762222956151;ALX4:-0.792704275421;GATA4:-0.84389378163;ZNF238:-0.857332239264;GTF2A1,2:-0.915329369397;TFAP4:-0.964223158419;PPARG:-1.0979349371;VSX1,2:-1.14421085951;NANOG{mouse}:-1.16269438879;ALX1:-1.19126312455;MTF1:-1.20268545417;NHLH1,2:-1.2484362641;HMX1:-1.45545954043
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10494-107B8;search_select_hide=table117:FF:10494-107B8
 }}

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FF:10494-107B8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:27, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0