FF:10778-110G4: Difference between revisions

Latest revision as of 15:04, 3 June 2020

Name:	hepatic mesenchymal tumor cell line:LI90
Species:	Human (Homo sapiens)
Library ID:	CNhs11868
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	liver
dev stage	NA
sex	female
age	55
cell type	adipocyte, lipocyte of liver
cell line	LI90
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005769

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11868		CAGE		DRX007903		DRR008775

Accession ID Hg19

Library id		BAM		CTSS
CNhs11868		DRZ000200		DRZ001585

Accession ID Hg38

Library id		BAM		CTSS
CNhs11868		DRZ011550		DRZ012935

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0773
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.295
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	1
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0992
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0386
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.447
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.241
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.288
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.388
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.791
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	1.038
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.134
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0563
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0262
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.507
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.217
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.236
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.663
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	-0.0155
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.781
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	1.045
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	1.072
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.951
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.974
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11868

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.277
MA0003.1	MA0003.1	0.976
MA0004.1	MA0004.1	0.0143
MA0006.1	MA0006.1	0.247
MA0007.1	MA0007.1	0.917
MA0009.1	MA0009.1	0.305
MA0014.1	MA0014.1	0.254
MA0017.1	MA0017.1	0.165
MA0018.2	MA0018.2	3.75211e-4
MA0019.1	MA0019.1	0.456
MA0024.1	MA0024.1	2.42038e-8
MA0025.1	MA0025.1	0.0211
MA0027.1	MA0027.1	0.249
MA0028.1	MA0028.1	2.9846e-5
MA0029.1	MA0029.1	0.501
MA0030.1	MA0030.1	0.129
MA0031.1	MA0031.1	0.209
MA0035.2	MA0035.2	0.0541
MA0038.1	MA0038.1	2.69328e-4
MA0039.2	MA0039.2	1.74438e-5
MA0040.1	MA0040.1	0.523
MA0041.1	MA0041.1	0.845
MA0042.1	MA0042.1	0.797
MA0043.1	MA0043.1	6.01969e-4
MA0046.1	MA0046.1	0.185
MA0047.2	MA0047.2	0.965
MA0048.1	MA0048.1	0.057
MA0050.1	MA0050.1	0.037
MA0051.1	MA0051.1	0.0109
MA0052.1	MA0052.1	0.211
MA0055.1	MA0055.1	0.349
MA0057.1	MA0057.1	0.75
MA0058.1	MA0058.1	3.70481e-5
MA0059.1	MA0059.1	0.0478
MA0060.1	MA0060.1	3.10758e-14
MA0061.1	MA0061.1	0.148
MA0062.2	MA0062.2	2.43081e-14
MA0065.2	MA0065.2	0.083
MA0066.1	MA0066.1	0.799
MA0067.1	MA0067.1	0.0252
MA0068.1	MA0068.1	0.507
MA0069.1	MA0069.1	0.33
MA0070.1	MA0070.1	0.676
MA0071.1	MA0071.1	0.967
MA0072.1	MA0072.1	0.746
MA0073.1	MA0073.1	0.261
MA0074.1	MA0074.1	0.827
MA0076.1	MA0076.1	3.20302e-7
MA0077.1	MA0077.1	0.769
MA0078.1	MA0078.1	0.521
MA0079.2	MA0079.2	0.866
MA0080.2	MA0080.2	4.11664e-8
MA0081.1	MA0081.1	5.95943e-4
MA0083.1	MA0083.1	3.3861e-4
MA0084.1	MA0084.1	0.777
MA0087.1	MA0087.1	0.822
MA0088.1	MA0088.1	0.0119
MA0090.1	MA0090.1	1.5875e-5
MA0091.1	MA0091.1	0.0986
MA0092.1	MA0092.1	0.00888
MA0093.1	MA0093.1	0.00615
MA0099.2	MA0099.2	0.0755
MA0100.1	MA0100.1	0.123
MA0101.1	MA0101.1	0.236
MA0102.2	MA0102.2	0.0515
MA0103.1	MA0103.1	0.0154
MA0104.2	MA0104.2	1.92545e-4
MA0105.1	MA0105.1	0.0605
MA0106.1	MA0106.1	0.0415
MA0107.1	MA0107.1	0.429
MA0108.2	MA0108.2	0.358
MA0111.1	MA0111.1	0.335
MA0112.2	MA0112.2	0.238
MA0113.1	MA0113.1	0.835
MA0114.1	MA0114.1	0.142
MA0115.1	MA0115.1	0.077
MA0116.1	MA0116.1	0.331
MA0117.1	MA0117.1	0.233
MA0119.1	MA0119.1	0.0181
MA0122.1	MA0122.1	0.605
MA0124.1	MA0124.1	0.204
MA0125.1	MA0125.1	0.213
MA0131.1	MA0131.1	0.0867
MA0135.1	MA0135.1	0.151
MA0136.1	MA0136.1	1.75954e-11
MA0137.2	MA0137.2	0.0175
MA0138.2	MA0138.2	0.62
MA0139.1	MA0139.1	0.249
MA0140.1	MA0140.1	0.321
MA0141.1	MA0141.1	0.252
MA0142.1	MA0142.1	0.168
MA0143.1	MA0143.1	0.653
MA0144.1	MA0144.1	0.995
MA0145.1	MA0145.1	0.691
MA0146.1	MA0146.1	0.37
MA0147.1	MA0147.1	0.0027
MA0148.1	MA0148.1	0.763
MA0149.1	MA0149.1	0.534
MA0150.1	MA0150.1	0.327
MA0152.1	MA0152.1	0.124
MA0153.1	MA0153.1	0.41
MA0154.1	MA0154.1	0.604
MA0155.1	MA0155.1	0.311
MA0156.1	MA0156.1	2.26646e-9
MA0157.1	MA0157.1	0.559
MA0159.1	MA0159.1	0.704
MA0160.1	MA0160.1	0.154
MA0162.1	MA0162.1	0.412
MA0163.1	MA0163.1	0.855
MA0164.1	MA0164.1	0.367
MA0258.1	MA0258.1	0.274
MA0259.1	MA0259.1	0.109

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11868

Novel motif	Logo	P-value
1	1	0.797
10	10	0.69
100	100	0.499
101	101	0.631
102	102	0.133
103	103	0.449
104	104	0.564
105	105	0.28
106	106	0.00377
107	107	0.00916
108	108	0.423
109	109	0.813
11	11	0.575
110	110	0.468
111	111	0.604
112	112	0.429
113	113	0.553
114	114	0.214
115	115	0.239
116	116	0.0206
117	117	0.261
118	118	0.757
119	119	0.0893
12	12	0.138
120	120	0.402
121	121	0.443
122	122	0.142
123	123	0.941
124	124	0.655
125	125	0.875
126	126	0.632
127	127	0.938
128	128	0.0527
129	129	0.352
13	13	0.0822
130	130	0.508
131	131	0.188
132	132	0.517
133	133	0.932
134	134	0.637
135	135	0.429
136	136	0.379
137	137	0.473
138	138	0.736
139	139	0.034
14	14	0.311
140	140	0.476
141	141	0.566
142	142	0.712
143	143	0.75
144	144	0.509
145	145	0.812
146	146	0.269
147	147	0.135
148	148	0.938
149	149	0.00502
15	15	0.692
150	150	0.0609
151	151	0.468
152	152	0.0338
153	153	0.63
154	154	0.354
155	155	0.0467
156	156	0.415
157	157	0.532
158	158	0.13
159	159	0.461
16	16	0.0937
160	160	0.655
161	161	0.978
162	162	0.864
163	163	0.551
164	164	0.0466
165	165	0.591
166	166	0.037
167	167	0.911
168	168	0.482
169	169	0.405
17	17	0.271
18	18	0.24
19	19	0.0761
2	2	0.161
20	20	0.403
21	21	0.421
22	22	0.637
23	23	0.005
24	24	0.316
25	25	0.139
26	26	0.498
27	27	0.974
28	28	0.416
29	29	0.465
3	3	0.545
30	30	0.724
31	31	0.392
32	32	2.84197e-14
33	33	0.183
34	34	0.674
35	35	0.921
36	36	0.0814
37	37	0.781
38	38	0.81
39	39	0.523
4	4	0.679
40	40	0.181
41	41	0.955
42	42	0.64
43	43	0.479
44	44	0.704
45	45	0.937
46	46	0.183
47	47	0.672
48	48	0.672
49	49	0.426
5	5	0.172
50	50	0.636
51	51	0.94
52	52	0.263
53	53	0.858
54	54	0.401
55	55	0.168
56	56	0.853
57	57	0.226
58	58	0.538
59	59	0.389
6	6	0.462
60	60	0.225
61	61	0.399
62	62	0.617
63	63	0.19
64	64	0.938
65	65	0.323
66	66	0.172
67	67	0.191
68	68	0.794
69	69	0.619
7	7	0.277
70	70	0.263
71	71	0.919
72	72	0.435
73	73	0.0756
74	74	0.0839
75	75	0.249
76	76	0.991
77	77	0.0684
78	78	0.988
79	79	0.0015
8	8	0.29
80	80	0.204
81	81	0.854
82	82	0.0927
83	83	0.592
84	84	0.789
85	85	9.40643e-4
86	86	0.916
87	87	0.832
88	88	0.608
89	89	0.352
9	9	0.778
90	90	0.452
91	91	0.538
92	92	0.0146
93	93	0.915
94	94	0.197
95	95	0.737
96	96	0.684
97	97	0.26
98	98	0.246
99	99	0.0192

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11868

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:3350 mesenchymal cell neoplasm
DOID:3571 liver cancer
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103519 LI90 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000632 (hepatic stellate cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3119 (gastrointestinal system cancer)
3350 (mesenchymal cell neoplasm)
3571 (liver cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100224 (liver cell line sample)
0103513 (hepatic stellate cell line sample)
0103519 (LI90 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007797
+|DRA_sample_Accession=CAGE@SAMD00005769
-|accession_numbers=CAGE;DRX007903;DRR008775;DRZ000200;DRZ001585
+|accession_numbers=CAGE;DRX007903;DRR008775;DRZ000200;DRZ001585;DRZ011550;DRZ012935
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000057,CL:0000632
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.67!46.12!ZBED1;;chr4:174451370..174451387,-!p1@HAND2!1.65!43.96!HAND2;;chr1:197886461..197886558,+!p1@LHX9!1.47!28.46!LHX9;;chr18:53068911..53068935,-!p4@TCF4!1.41!28.10!TCF4;;chr18:19749386..19749404,+!p2@GATA6!1.40!33.87!GATA6;;chr16:86544113..86544145,+!p1@FOXF1!1.39!29.18!FOXF1;;chr21:38071430..38071456,+!p1@SIM2!1.39!23.78!SIM2;;chr8:11561684..11561751,+!p1@GATA4!1.38!23.06!GATA4;;chr8:106330656..106330684,+!p1@ZFPM2!1.35!55.49!ZFPM2;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!99.80!CREB3L1;;chr17:1959369..1959388,+!p2@HIC1!1.32!51.16!HIC1;;chr18:19749541..19749557,+!p1@GATA6!1.26!52.96!GATA6;;chr4:174450089..174450153,-!p2@HAND2!1.26!17.29!HAND2;;chr12:80085061..80085119,-!p6@PAWR!1.24!26.30!PAWR;;chr11:125034640..125034655,+!p1@PKNOX2!1.16!13.33!PKNOX2;;chr10:64576105..64576133,-!p1@EGR2!1.15!26.66!EGR2;;chr2:46524537..46524553,+!p1@EPAS1!1.14!1252.40!EPAS1;;chr2:66662281..66662308,+!p1@MEIS1!1.14!43.96!MEIS1;;chr20:50179368..50179392,-!p2@NFATC2!1.13!16.21!NFATC2;;chr6:134210243..134210257,+!p1@TCF21!1.09!11.17!TCF21;;chr7:35293685..35293718,-!p1@TBX20!1.09!11.17!TBX20;;chr10:63809106..63809127,+!p1@ARID5B!1.07!147.00!ARID5B;;chr7:1577899..1577943,+!p3@MAFK!1.07!10.81!MAFK;;chr4:174451350..174451363,-!p3@HAND2!1.06!10.45!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!1.04!10.09!PRRX1;;chr2:66662396..66662407,+!p4@MEIS1!1.03!9.73!MEIS1;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.17!ZBTB38;;chr3:178789522..178789564,-!p2@ZMAT3!0.99!65.93!ZMAT3;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.13!CREB3L1;;chr8:55370487..55370503,+!p1@SOX17!0.98!8.65!SOX17;;chr15:96869255..96869291,+!p6@NR2F2!0.97!15.49!NR2F2;;chr8:106330696..106330719,+!p2@ZFPM2!0.96!10.45!ZFPM2;;chr7:44143925..44143970,+!p1@AEBP1!0.95!182.31!AEBP1;;chr5:139492456..139492489,+!p7@PURA!0.95!7.93!PURA;;chr12:80085120..80085156,-!p14@PAWR!0.95!7.93!PAWR;;chr16:86600426..86600441,+!p1@FOXC2!0.93!19.10!FOXC2;;chr7:44143978..44143989,+!p2@AEBP1!0.92!13.69!AEBP1;;chr12:26277817..26277863,-!p2@BHLHE41!0.91!9.73!BHLHE41;;chr5:72744445..72744466,-!p2@FOXD1!0.90!11.89!FOXD1;;chr2:121493425..121493474,+!p1@GLI2!0.89!15.49!GLI2;;chr9:100615499..100615519,+!p1@FOXE1!0.89!6.85!FOXE1;;chr15:96874012..96874042,+!p2@NR2F2!0.88!63.05!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.86!11.53!ZFP106;;chr8:72756267..72756296,-!p4@MSC!0.86!9.37!MSC;;chr8:72756063..72756125,-!p1@MSC!0.85!12.97!MSC;;chr8:72756667..72756736,-!p2@MSC!0.85!9.73!MSC;;chr5:142780189..142780223,-!p6@NR3C1!0.85!6.13!NR3C1;;chr7:150945754..150945789,-!p2@SMARCD3!0.84!19.10!SMARCD3;;chr3:141121847..141121868,+!p5@ZBTB38!0.84!9.37!ZBTB38;;chr19:42636586..42636607,-!p1@POU2F2!0.83!16.93!POU2F2;;chr12:66218255..66218304,+!p3@HMGA2!0.83!16.21!HMGA2;;chr12:54402745..54402788,+!p1@HOXC8!0.83!5.76!HOXC8;;chr10:63809013..63809041,+!p3@ARID5B!0.81!32.79!ARID5B;;chr2:66662510..66662521,+!p6@MEIS1!0.81!5.40!MEIS1;;chr16:86600870..86600921,+!p2@FOXC2!0.81!5.40!FOXC2;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.40!GATA6;;chr5:142780237..142780261,-!p7@NR3C1!0.81!5.40!NR3C1;;chr21:36260295..36260310,-!p3@RUNX1!0.80!9.01!RUNX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.78!5.04!HOXC5;;chr20:48599506..48599526,+!p1@SNAI1!0.77!34.23!SNAI1;;chr2:66662249..66662267,+!p2@MEIS1!0.77!20.54!MEIS1;;chr8:72756213..72756243,-!p5@MSC!0.77!6.49!MSC;;chr6:144329384..144329405,-!p1@PLAGL1!0.76!60.89!PLAGL1;;chr2:208030647..208030689,-!p1@KLF7!0.76!43.60!KLF7;;chr9:102584159..102584174,+!p2@NR4A3!0.76!9.01!NR4A3;;chr21:36260343..36260402,-!p6@RUNX1!0.76!7.93!RUNX1;;chr1:23885981..23886002,-!p1@ID3!0.75!900.39!ID3;;chr19:47523058..47523114,+!p1@NPAS1!0.75!4.68!NPAS1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.74!44.32!PPP1R13L;;chr10:63853436..63853442,+!p4@ARID5B!0.74!26.66!ARID5B;;chr10:63809077..63809089,+!p5@ARID5B!0.74!10.45!ARID5B;;chr11:12696071..12696086,+!p3@TEAD1!0.74!6.13!TEAD1;;chr15:96869222..96869251,+!p18@NR2F2!0.74!5.40!NR2F2;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.04!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!0.73!61.97!NR4A1;;chr2:176994408..176994492,+!p1@HOXD8!0.73!4.32!HOXD8;;chr15:60884706..60884743,-!p1@RORA!0.72!24.50!RORA;;chr2:239756671..239756732,+!p1@TWIST2!0.72!15.13!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.72!6.85!HMGA2;;chr7:137686791..137686821,-!p1@CREB3L2!0.71!136.19!CREB3L2;;chr21:36260980..36261011,-!p1@RUNX1!0.71!133.67!RUNX1;;chr5:92918894..92918912,+!p2@NR2F1!0.71!14.77!NR2F1;;chr1:170632285..170632309,+!p1@PRRX1!0.70!4.68!PRRX1;;chr17:46126136..46126152,+!p1@NFE2L1!0.69!231.31!NFE2L1;;chr2:101436564..101436647,+!p1@NPAS2!0.69!90.07!NPAS2;;chr12:66218598..66218645,+!p2@HMGA2!0.69!20.18!HMGA2;;chr3:71630980..71631110,-!p3@FOXP1!0.69!15.13!FOXP1;;chr17:46621937..46621966,-!p2@HOXB2!0.69!11.53!HOXB2;;chr7:137686763..137686784,-!p5@CREB3L2!0.69!7.21!CREB3L2;;chr20:39946361..39946379,-!p2@ZHX3!0.68!12.61!ZHX3;;chr18:19749517..19749531,+!p3@GATA6!0.68!7.21!GATA6;;chr2:239756739..239756755,+!p2@TWIST2!0.68!6.85!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!0.68!5.40!PRRX1;;chr7:44143997..44144008,+!p3@AEBP1!0.68!5.04!AEBP1;;chr2:121493492..121493537,+!p2@GLI2!0.67!6.49!GLI2;;chr10:63809090..63809097,+!p7@ARID5B!0.67!5.40!ARID5B;;chr2:66662895..66662907,+!p3@MEIS1!0.67!4.68!MEIS1;;chr8:49833978..49833996,-!p1@SNAI2!0.66!86.11!SNAI2;;chr3:71114066..71114114,-!p1@FOXP1!0.66!85.03!FOXP1;;chr5:72744594..72744609,-!p1@FOXD1!0.66!18.74!FOXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.66!18.01!ZBTB20;;chr3:5021268..5021282,+!p4@BHLHE40!0.66!7.93!BHLHE40;;chr15:96874145..96874166,+!p7@NR2F2!0.66!7.57!NR2F2;;chr18:19749504..19749515,+!p5@GATA6!0.66!3.60!GATA6;;chr3:101575889..101575903,+!p3@NFKBIZ!0.66!3.60!NFKBIZ;;chr12:54402790..54402805,+!p2@HOXC8!0.66!3.60!HOXC8;;chr20:30433396..30433414,-!p1@FOXS1!0.66!3.60!FOXS1;;chr8:49833948..49833973,-!p2@SNAI2!0.65!25.58!SNAI2;;chr6:144289132..144289134,-!p3@PLAGL1!0.65!9.01!PLAGL1;;chr19:47922750..47922795,-!p1@MEIS3!0.65!6.13!MEIS3;;chr2:238536207..238536290,+!p2@LRRFIP1!0.64!38.91!LRRFIP1;;chr17:1958388..1958404,+!p1@HIC1!0.64!25.22!HIC1;;chr12:27485762..27485776,+!p3@ARNTL2!0.64!10.09!ARNTL2;;chr7:137563905..137563916,-!p11@CREB3L2!0.64!5.04!CREB3L2;;chr9:4300050..4300118,-!p1@GLIS3!0.63!24.86!GLIS3;;chr12:27485823..27485868,+!p2@ARNTL2!0.63!15.49!ARNTL2;;chr2:19558373..19558392,-!p1@OSR1!0.63!10.09!OSR1;;chr15:60884747..60884774,-!p3@RORA!0.63!9.01!RORA;;chr7:137564014..137564042,-!p8@CREB3L2!0.63!6.13!CREB3L2;;chr7:97840743..97840786,+!p1@BHLHA15!0.63!3.24!BHLHA15;;chr8:72756194..72756208,-!p9@MSC!0.63!3.24!MSC;;chr2:66662797..66662818,+!p10@MEIS1!0.63!3.24!MEIS1;;chr1:170632723..170632739,+!p8@PRRX1!0.63!3.24!PRRX1;;chr11:125034586..125034604,+!p3@PKNOX2!0.63!3.24!PKNOX2;;chr16:31076332..31076388,-!p3@ZNF668!0.63!3.24!ZNF668;;chr10:63809134..63809145,+!p6@ARID5B!0.62!8.29!ARID5B;;chr12:80084279..80084293,-!p8@PAWR!0.62!5.76!PAWR;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.41!ZBTB38;;chr11:12696002..12696022,+!p2@TEAD1!0.61!8.65!TEAD1;;chr20:3388579..3388619,-!p3@C20orf194!0.61!8.29!C20orf194;;chr12:115121962..115121987,-!p1@TBX3!0.60!30.27!TBX3;;chr18:53255415..53255491,-!p1@TCF4!0.60!30.27!TCF4;;chr2:85360499..85360598,+!p1@TCF7L1!0.60!19.82!TCF7L1;;chr15:96874244..96874259,+!p5@NR2F2!0.60!8.29!NR2F2;;chr1:200379104..200379128,-!p2@ZNF281!0.60!8.29!ZNF281;;chr5:139487608..139487663,+!p3@PURA!0.60!7.21!PURA;;chr3:71630690..71630750,-!p11@FOXP1!0.60!5.40!FOXP1;;chr15:96869292..96869320,+!p15@NR2F2!0.60!4.68!NR2F2;;chr5:137804357..137804390,+!p4@EGR1!0.60!3.60!EGR1;;chr12:77459306..77459365,-!p1@E2F7!0.59!44.32!E2F7;;chr15:96873984..96873999,+!p3@NR2F2!0.59!25.58!NR2F2;;chr5:321810..321877,+!p1@AHRR!0.59!10.81!AHRR;;chr3:178789622..178789633,-!p3@ZMAT3!0.59!6.13!ZMAT3;;chr17:7382834..7382855,-!p6@ZBTB4!0.59!5.40!ZBTB4;;chr17:59477403..59477414,+!p4@TBX2!0.59!2.88!TBX2;;chr8:72756380..72756427,-!p8@MSC!0.59!2.88!MSC;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.59!2.88!HOXC5;;chr19:46801639..46801699,+!p1@HIF3A!0.59!2.88!HIF3A;;chr1:170632250..170632277,+!p7@PRRX1!0.59!2.88!PRRX1;;chr3:141087339..141087387,+!p2@ZBTB38!0.58!34.95!ZBTB38;;chr14:62162285..62162296,+!p3@HIF1A!0.58!17.65!HIF1A;;chr21:30671690..30671762,+!p2@BACH1!0.58!11.17!BACH1;;chr17:59477233..59477263,+!p1@TBX2!0.58!10.09!TBX2;;chr2:113993052..113993097,-!p2@PAX8!0.58!7.21!PAX8;;chr15:96874216..96874236,+!p13@NR2F2!0.58!4.68!NR2F2;;chr19:31840130..31840160,-!p2@TSHZ3!0.58!4.68!TSHZ3;;chr2:46612334..46612349,+!p6@EPAS1!0.58!3.96!EPAS1;;chr3:178789566..178789620,-!p1@ZMAT3!0.57!59.81!ZMAT3;;chr10:77161504..77161530,-!p1@ZNF503!0.57!44.68!ZNF503;;chr2:46524506..46524514,+!p5@EPAS1!0.57!5.76!EPAS1;;chr20:50721803..50721857,-!p2@ZFP64!0.57!4.68!ZFP64;;chr2:200322654..200322707,-!p2@SATB2!0.57!4.32!SATB2;;chr16:73093174..73093209,-!p3@ZFHX3!0.57!3.96!ZFHX3;;chr4:57774042..57774114,+!p1@REST!0.56!79.99!REST;;chr8:116681123..116681143,-!p4@TRPS1!0.56!5.76!TRPS1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.55!168.62!NFKBIZ;;chr18:77155922..77155939,+!p1@NFATC1!0.55!8.29!NFATC1;;chr15:96876966..96877017,+!p12@NR2F2!0.55!3.96!NR2F2;;chr12:26277929..26277955,-!p3@BHLHE41!0.55!3.96!BHLHE41;;chr17:59477275..59477286,+!p3@TBX2!0.55!3.60!TBX2;;chr5:137804405..137804444,+!p3@EGR1!0.55!3.24!EGR1;;chr7:150945865..150945896,-!p4@SMARCD3!0.55!2.52!SMARCD3;;chr17:7382810..7382822,-!p12@ZBTB4!0.55!2.52!ZBTB4;;chr1:170632683..170632696,+!p12@PRRX1!0.55!2.52!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.55!2.52!SIM2;;chr21:38071462..38071474,+!p3@SIM2!0.55!2.52!SIM2;;chr11:125034605..125034636,+!p2@PKNOX2!0.55!2.52!PKNOX2;;chr22:38598086..38598105,+!p1@MAFF!0.54!33.51!MAFF;;chr5:92918919..92918942,+!p1@NR2F1!0.54!13.69!NR2F1;;chr7:137563945..137564001,-!p6@CREB3L2!0.54!6.85!CREB3L2;;chr3:71114115..71114126,-!p14@FOXP1!0.54!4.68!FOXP1;;chr2:208031943..208031978,-!p5@KLF7!0.54!3.60!KLF7;;chr12:54447599..54447630,+!p3@HOXC4!0.54!3.24!HOXC4;;chr8:72756637..72756664,-!p3@MSC!0.54!2.88!MSC;;chr10:111967345..111967422,+!p1@M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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10778-110G4
 |is_a=DOID:3350;;DOID:3571;;EFO:0002091;;FF:0000210;;FF:0103519
 |is_obsolete=
 |library_id=CNhs11868
-|library_ids=CNhs11868
+|library_id_phase_based=2:CNhs11868
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10778
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10778
 |name=hepatic mesenchymal tumor cell line:LI90
 |namespace=FANTOM5
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11868,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10778-110G4;search_select_hide=table117:FF:10778-110G4
 }}

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FF:10778-110G4: Difference between revisions

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Latest revision as of 15:04, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0