FF:11255-116F4: Difference between revisions

Latest revision as of 16:28, 3 June 2020

Name:	Sertoli Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs10851
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	testis
dev stage	23 years old adult
sex	male
age	23
cell type	sertoli cell
cell line	NA
company	Lonza
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005843

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10851		CAGE		DRX008450		DRR009322

Accession ID Hg19

Library id		BAM		CTSS
CNhs10851		DRZ000747		DRZ002132

Accession ID Hg38

Library id		BAM		CTSS
CNhs10851		DRZ012097		DRZ013482

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005843

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10003.GTAGAG		sRNA-Seq		DRX037025		DRR041391

Accession ID Hg19

Library id		BAM		CTSS
SRhi10003.GTAGAG		DRZ007033

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.117
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.155
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.625
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0842
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.163
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.416
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.129
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.125
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.143
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.416
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0202
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0322
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.059
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.625
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.625
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	1.088
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.765
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.416
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10851

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.568
MA0003.1	MA0003.1	0.423
MA0004.1	MA0004.1	0.109
MA0006.1	MA0006.1	0.469
MA0007.1	MA0007.1	0.157
MA0009.1	MA0009.1	0.401
MA0014.1	MA0014.1	0.314
MA0017.1	MA0017.1	0.303
MA0018.2	MA0018.2	1.53121e-6
MA0019.1	MA0019.1	0.397
MA0024.1	MA0024.1	2.2918e-4
MA0025.1	MA0025.1	0.0793
MA0027.1	MA0027.1	0.987
MA0028.1	MA0028.1	6.00347e-4
MA0029.1	MA0029.1	0.85
MA0030.1	MA0030.1	0.279
MA0031.1	MA0031.1	0.293
MA0035.2	MA0035.2	0.656
MA0038.1	MA0038.1	0.00619
MA0039.2	MA0039.2	0.0457
MA0040.1	MA0040.1	0.371
MA0041.1	MA0041.1	0.421
MA0042.1	MA0042.1	0.979
MA0043.1	MA0043.1	0.00324
MA0046.1	MA0046.1	0.811
MA0047.2	MA0047.2	0.444
MA0048.1	MA0048.1	0.906
MA0050.1	MA0050.1	0.422
MA0051.1	MA0051.1	0.928
MA0052.1	MA0052.1	0.429
MA0055.1	MA0055.1	0.255
MA0057.1	MA0057.1	0.194
MA0058.1	MA0058.1	0.0125
MA0059.1	MA0059.1	0.888
MA0060.1	MA0060.1	1.98668e-9
MA0061.1	MA0061.1	0.627
MA0062.2	MA0062.2	4.46511e-10
MA0065.2	MA0065.2	0.198
MA0066.1	MA0066.1	0.194
MA0067.1	MA0067.1	0.001
MA0068.1	MA0068.1	0.325
MA0069.1	MA0069.1	0.353
MA0070.1	MA0070.1	0.653
MA0071.1	MA0071.1	0.532
MA0072.1	MA0072.1	0.638
MA0073.1	MA0073.1	0.632
MA0074.1	MA0074.1	0.474
MA0076.1	MA0076.1	4.41584e-5
MA0077.1	MA0077.1	0.83
MA0078.1	MA0078.1	0.517
MA0079.2	MA0079.2	0.471
MA0080.2	MA0080.2	1.36181e-7
MA0081.1	MA0081.1	0.00348
MA0083.1	MA0083.1	0.0248
MA0084.1	MA0084.1	0.694
MA0087.1	MA0087.1	0.778
MA0088.1	MA0088.1	0.789
MA0090.1	MA0090.1	1.20374e-7
MA0091.1	MA0091.1	0.00779
MA0092.1	MA0092.1	0.0059
MA0093.1	MA0093.1	0.0658
MA0099.2	MA0099.2	0.371
MA0100.1	MA0100.1	0.287
MA0101.1	MA0101.1	0.26
MA0102.2	MA0102.2	0.295
MA0103.1	MA0103.1	0.747
MA0104.2	MA0104.2	0.11
MA0105.1	MA0105.1	0.0299
MA0106.1	MA0106.1	0.00605
MA0107.1	MA0107.1	0.385
MA0108.2	MA0108.2	0.0117
MA0111.1	MA0111.1	0.557
MA0112.2	MA0112.2	6.43814e-5
MA0113.1	MA0113.1	0.15
MA0114.1	MA0114.1	0.772
MA0115.1	MA0115.1	0.592
MA0116.1	MA0116.1	0.0153
MA0117.1	MA0117.1	0.994
MA0119.1	MA0119.1	0.0363
MA0122.1	MA0122.1	0.0759
MA0124.1	MA0124.1	0.615
MA0125.1	MA0125.1	0.491
MA0131.1	MA0131.1	0.434
MA0135.1	MA0135.1	0.0298
MA0136.1	MA0136.1	2.98373e-9
MA0137.2	MA0137.2	0.443
MA0138.2	MA0138.2	0.515
MA0139.1	MA0139.1	0.905
MA0140.1	MA0140.1	0.757
MA0141.1	MA0141.1	0.357
MA0142.1	MA0142.1	0.579
MA0143.1	MA0143.1	0.12
MA0144.1	MA0144.1	0.772
MA0145.1	MA0145.1	0.125
MA0146.1	MA0146.1	0.808
MA0147.1	MA0147.1	0.606
MA0148.1	MA0148.1	0.697
MA0149.1	MA0149.1	0.149
MA0150.1	MA0150.1	0.609
MA0152.1	MA0152.1	0.00585
MA0153.1	MA0153.1	0.324
MA0154.1	MA0154.1	0.0173
MA0155.1	MA0155.1	0.376
MA0156.1	MA0156.1	9.91965e-6
MA0157.1	MA0157.1	0.714
MA0159.1	MA0159.1	0.166
MA0160.1	MA0160.1	0.924
MA0162.1	MA0162.1	0.0457
MA0163.1	MA0163.1	6.27336e-5
MA0164.1	MA0164.1	0.594
MA0258.1	MA0258.1	0.00506
MA0259.1	MA0259.1	0.843

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10851

Novel motif	Logo	P-value
1	1	0.124
10	10	0.638
100	100	0.696
101	101	0.735
102	102	0.126
103	103	0.082
104	104	0.791
105	105	0.806
106	106	0.0231
107	107	0.0267
108	108	0.373
109	109	0.157
11	11	0.285
110	110	0.246
111	111	0.973
112	112	0.468
113	113	0.194
114	114	0.0927
115	115	0.368
116	116	0.0719
117	117	0.739
118	118	0.972
119	119	0.263
12	12	0.362
120	120	0.901
121	121	0.817
122	122	0.504
123	123	0.158
124	124	0.532
125	125	0.768
126	126	0.983
127	127	0.895
128	128	0.0476
129	129	0.385
13	13	0.677
130	130	0.384
131	131	0.0723
132	132	0.716
133	133	0.789
134	134	0.12
135	135	0.146
136	136	0.508
137	137	0.653
138	138	0.581
139	139	0.566
14	14	0.866
140	140	0.442
141	141	0.539
142	142	0.584
143	143	0.048
144	144	0.705
145	145	0.362
146	146	0.584
147	147	0.183
148	148	0.445
149	149	1.6355e-4
15	15	0.175
150	150	0.383
151	151	0.415
152	152	0.122
153	153	0.158
154	154	0.86
155	155	0.216
156	156	0.46
157	157	0.888
158	158	0.0771
159	159	0.411
16	16	0.026
160	160	0.141
161	161	0.245
162	162	0.83
163	163	0.514
164	164	0.212
165	165	0.992
166	166	0.0733
167	167	0.566
168	168	0.859
169	169	0.0339
17	17	0.22
18	18	0.0435
19	19	0.0356
2	2	0.144
20	20	0.327
21	21	0.148
22	22	0.191
23	23	0.0204
24	24	0.673
25	25	0.798
26	26	0.0933
27	27	0.158
28	28	0.436
29	29	0.723
3	3	0.251
30	30	0.402
31	31	0.521
32	32	1.0594e-11
33	33	0.435
34	34	0.604
35	35	0.214
36	36	0.401
37	37	0.211
38	38	0.83
39	39	0.213
4	4	0.949
40	40	0.749
41	41	0.407
42	42	0.513
43	43	0.302
44	44	0.681
45	45	0.433
46	46	0.0637
47	47	0.443
48	48	0.471
49	49	0.297
5	5	0.307
50	50	0.534
51	51	0.916
52	52	0.132
53	53	0.871
54	54	0.532
55	55	0.0934
56	56	0.782
57	57	0.269
58	58	0.789
59	59	0.0752
6	6	0.643
60	60	0.112
61	61	0.521
62	62	0.192
63	63	0.179
64	64	0.557
65	65	0.227
66	66	0.99
67	67	0.123
68	68	0.974
69	69	0.445
7	7	0.921
70	70	0.104
71	71	0.0742
72	72	0.714
73	73	0.251
74	74	0.00924
75	75	0.325
76	76	0.755
77	77	0.00838
78	78	0.532
79	79	0.0112
8	8	0.0467
80	80	0.754
81	81	0.27
82	82	0.24
83	83	0.4
84	84	0.975
85	85	0.0355
86	86	0.519
87	87	0.797
88	88	0.456
89	89	0.046
9	9	0.387
90	90	0.171
91	91	0.53
92	92	0.124
93	93	0.516
94	94	0.152
95	95	0.452
96	96	0.318
97	97	0.171
98	98	0.888
99	99	0.00427

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10851

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000161 human sertoli cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000511 (androgen binding protein secreting cell)
0000630 (supportive cell)
0002625 (seminiferous tubule epithelial cell)
0000154 (protein secreting cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
0000216 (Sertoli cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000473 (testis)
0001136 (mesothelium)
0000483 (epithelium)
0000991 (gonad)
0001343 (seminiferous tubule of testis)
0000479 (tissue)
0000058 (duct)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0003133 (reproductive organ)
0005904 (duct of male reproductive system)
0000487 (simple squamous epithelium)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0004910 (epithelium of male gonad)
0004909 (epithelium of gonad)
0004813 (seminiferous tubule epithelium)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000161 (human sertoli cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005843
-|accession_numbers=CAGE;DRX008450;DRR009322;DRZ000747;DRZ002132
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005843
+|accession_numbers=CAGE;DRX008450;DRR009322;DRZ000747;DRZ002132;DRZ012097;DRZ013482
+|accession_numbers_RNASeq=sRNA-Seq;DRX037025;DRR041391;DRZ007033
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000473,UBERON:0001136,UBERON:0000483,UBERON:0000991,UBERON:0001343,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0003133,UBERON:0005904,UBERON:0000487,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0004910,UBERON:0004909,UBERON:0004813,UBERON:0003101,UBERON:0000079
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000511,CL:0000630,CL:0002625,CL:0000154,CL:0000255,CL:0000077,CL:0000216
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.47!294.05!LHX9;;chr8:11561684..11561751,+!p1@GATA4!1.73!53.03!GATA4;;chr6:134210243..134210257,+!p1@TCF21!1.71!49.81!TCF21;;chr2:19558373..19558392,-!p1@OSR1!1.64!112.48!OSR1;;chr11:46299199..46299233,+!p1@CREB3L1!1.51!157.47!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.43!25.71!HOXC5;;chr11:61520075..61520136,+!p1@C11orf9!1.34!43.38!C11orf9;;chr1:170633348..170633399,+!p2@PRRX1!1.27!24.10!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.24!27.32!CREB3L1;;chr5:139492456..139492489,+!p7@PURA!1.23!16.07!PURA;;chr8:72756637..72756664,-!p3@MSC!1.22!17.68!MSC;;chr18:53068911..53068935,-!p4@TCF4!1.14!14.46!TCF4;;chr14:62162258..62162269,+!p2@HIF1A!1.10!110.87!HIF1A;;chr5:72744445..72744466,-!p2@FOXD1!1.10!19.28!FOXD1;;chr11:46299186..46299195,+!p3@CREB3L1!1.10!12.85!CREB3L1;;chr18:19749386..19749404,+!p2@GATA6!1.09!16.07!GATA6;;chr1:170632285..170632309,+!p1@PRRX1!1.09!12.85!PRRX1;;chr3:25470156..25470227,+!p2@RARB!1.09!11.25!RARB;;chr9:127269661..127269719,-!p1@NR5A1!1.09!11.25!NR5A1;;chr8:72756667..72756736,-!p2@MSC!1.05!16.07!MSC;;chr1:170632959..170632987,+!p4@PRRX1!1.05!11.25!PRRX1;;chr8:72756267..72756296,-!p4@MSC!1.03!14.46!MSC;;chr1:170633262..170633285,+!p3@PRRX1!1.03!11.25!PRRX1;;chr19:46801639..46801699,+!p1@HIF3A!1.03!9.64!HIF3A;;chr16:31076332..31076388,-!p3@ZNF668!1.03!9.64!ZNF668;;chr7:1577899..1577943,+!p3@MAFK!1.03!9.64!MAFK;;chr2:177053386..177053402,+!p1@HOXD1!1.03!9.64!HOXD1;;chr14:62162285..62162296,+!p3@HIF1A!1.02!49.81!HIF1A;;chr17:1959369..1959388,+!p2@HIC1!1.00!24.10!HIC1;;chr10:63809013..63809041,+!p3@ARID5B!0.99!49.81!ARID5B;;chr15:96869255..96869291,+!p6@NR2F2!0.99!16.07!NR2F2;;chr8:72756063..72756125,-!p1@MSC!0.98!17.68!MSC;;chr16:67881588..67881612,-!p2@CENPT!0.96!11.25!CENPT;;chr2:176994408..176994492,+!p1@HOXD8!0.96!8.03!HOXD8;;chr2:177001290..177001315,+!p1@HOXD3!0.96!8.03!HOXD3;;chr3:25469815..25469866,+!p3@RARB!0.96!8.03!RARB;;chrY:21906594..21906622,-!p1@KDM5D!0.96!8.03!KDM5D;;chr1:197886665..197886732,+!p3@LHX9!0.96!8.03!LHX9;;chr8:55370487..55370503,+!p1@SOX17!0.96!8.03!SOX17;;chr12:54402745..54402788,+!p1@HOXC8!0.96!8.03!HOXC8;;chr18:19749541..19749557,+!p1@GATA6!0.95!25.71!GATA6;;chr3:141105705..141105770,+!p4@ZBTB38!0.95!9.64!ZBTB38;;chr8:106330656..106330684,+!p1@ZFPM2!0.94!20.89!ZFPM2;;chr19:13136130..13136165,+!p6@NFIX!0.91!9.64!NFIX;;chr1:23696348..23696363,-!p4@ZNF436!0.91!8.03!ZNF436;;chr17:1958388..1958404,+!p1@HIC1!0.90!46.60!HIC1;;chr5:92918919..92918942,+!p1@NR2F1!0.90!32.14!NR2F1;;chr18:3450293..3450304,+!p4@TGIF1!0.90!17.68!TGIF1;;chr12:80085061..80085119,-!p6@PAWR!0.90!11.25!PAWR;;chr2:239756671..239756732,+!p1@TWIST2!0.89!22.50!TWIST2;;chr2:176994919..176994931,+!p2@HOXD8!0.87!6.43!HOXD8;;chr9:16705069..16705086,-!p3@BNC2!0.87!6.43!BNC2;;chr8:11534462..11534475,+!p6@GATA4!0.87!6.43!GATA4;;chr12:80085120..80085156,-!p14@PAWR!0.87!6.43!PAWR;;chr19:47523058..47523114,+!p1@NPAS1!0.87!6.43!NPAS1;;chr5:158526917..158526932,-!p1@EBF1!0.85!16.07!EBF1;;chr15:42749722..42749739,-!p2@ZFP106!0.85!11.25!ZFP106;;chr18:19749517..19749531,+!p3@GATA6!0.85!11.25!GATA6;;chr8:72756213..72756243,-!p5@MSC!0.85!8.03!MSC;;chr19:45260775..45260838,+!p5@BCL3!0.85!8.03!BCL3;;chr1:158979872..158979898,+!p3@IFI16!0.84!19.28!IFI16;;chr1:8938709..8938720,-!p3@ENO1!0.83!298.87!ENO1;;chr14:62203595..62203676,+!p4@HIF1A!0.83!11.25!HIF1A;;chr10:63808979..63808990,+!p8@ARID5B!0.83!6.43!ARID5B;;chr10:63853436..63853442,+!p4@ARID5B!0.82!32.14!ARID5B;;chr1:158969752..158969780,+!p6@IFI16!0.80!9.64!IFI16;;chr10:63809106..63809127,+!p1@ARID5B!0.79!75.52!ARID5B;;chr8:106330696..106330719,+!p2@ZFPM2!0.77!6.43!ZFPM2;;chr6:19837592..19837621,+!p1@ID4!0.76!32.14!ID4;;chr2:121493425..121493474,+!p1@GLI2!0.76!11.25!GLI2;;chr15:96874145..96874166,+!p7@NR2F2!0.76!9.64!NR2F2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.76!4.82!SEBOX;;chr18:53068940..53068951,-!p21@TCF4!0.76!4.82!TCF4;;chr2:176973498..176973524,+!p1@HOXD10!0.76!4.82!HOXD10;;chr4:174450089..174450153,-!p2@HAND2!0.76!4.82!HAND2;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.82!ZFY;;chr8:11534438..11534451,+!p3@GATA4!0.76!4.82!GATA4;;chr8:72756380..72756427,-!p8@MSC!0.76!4.82!MSC;;chr8:93074848..93074871,-!p3@RUNX1T1!0.76!4.82!RUNX1T1;;chr11:46333934..46333963,+!p5@CREB3L1!0.76!4.82!CREB3L1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.76!4.82!HOXC5;;chr1:170632723..170632739,+!p8@PRRX1!0.76!4.82!PRRX1;;chr12:124873357..124873401,-!p1@NCOR2!0.74!57.85!NCOR2;;chr2:239756739..239756755,+!p2@TWIST2!0.74!8.03!TWIST2;;chr5:92918956..92918969,+!p4@NR2F1!0.73!4.82!NR2F1;;chr15:96869292..96869320,+!p15@NR2F2!0.72!6.43!NR2F2;;chr9:4300050..4300118,-!p1@GLIS3!0.71!30.53!GLIS3;;chr9:35732647..35732678,+!p2@CREB3!0.71!25.71!CREB3;;chr11:65686732..65686756,+!p2@DRAP1!0.71!19.28!DRAP1;;chr19:13134772..13134822,+!p2@NFIX!0.71!6.43!NFIX;;chr15:96869222..96869251,+!p18@NR2F2!0.70!4.82!NR2F2;;chr3:71007344..71007348,-!p6@FOXP1!0.69!17.68!FOXP1;;chr11:62369383..62369399,-!p6@MTA2!0.69!9.64!MTA2;;chr19:31840130..31840160,-!p2@TSHZ3!0.69!6.43!TSHZ3;;chr14:62162224..62162254,+!p1@HIF1A!0.68!637.92!HIF1A;;chr19:45251943..45252006,+!p1@BCL3!0.68!114.09!BCL3;;chr7:44143925..44143970,+!p1@AEBP1!0.68!98.02!AEBP1;;chr6:144289132..144289134,-!p3@PLAGL1!0.68!9.64!PLAGL1;;chr21:36260343..36260402,-!p6@RUNX1!0.68!6.43!RUNX1;;chr1:23696448..23696453,-!p5@ZNF436!0.68!4.82!ZNF436;;chr6:85473156..85473210,-!p2@TBX18!0.68!4.82!TBX18;;chr19:47922750..47922795,-!p1@MEIS3!0.67!6.43!MEIS3;;chr7:44143997..44144008,+!p3@AEBP1!0.67!4.82!AEBP1;;chr9:117150303..117150312,-!p3@AKNA!0.67!4.82!AKNA;;chr11:12696002..12696022,+!p2@TEAD1!0.66!9.64!TEAD1;;chr2:121493492..121493537,+!p2@GLI2!0.66!6.43!GLI2;;chr12:80084137..80084165,-!p10@PAWR!0.66!4.82!PAWR;;chr14:62213758..62213774,+!p8@HIF1A!0.66!4.82!HIF1A;;chr19:18391615..18391637,-!p5@JUND!0.66!4.82!JUND;;chr6:126102292..126102329,+!p3@NCOA7!0.65!12.85!NCOA7;;chr8:48650982..48651023,-!p3@CEBPD!0.65!9.64!CEBPD;;chr1:23696308..23696339,-!p2@ZNF436!0.65!8.03!ZNF436;;chr17:59477197..59477212,+!p2@TBX2!0.65!6.43!TBX2;;chr17:42295897..42295953,-!p10@UBTF!0.65!4.82!UBTF;;chr5:158526459..158526481,-!p2@EBF1!0.65!4.82!EBF1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.64!35.35!PPP1R13L;;chr3:37217736..37217753,-!p2@LRRFIP2!0.64!16.07!LRRFIP2;;chr10:63809077..63809089,+!p5@ARID5B!0.64!8.03!ARID5B;;chr1:8924055..8924074,-!p9@ENO1!0.64!6.43!ENO1;;chr12:26277817..26277863,-!p2@BHLHE41!0.64!4.82!BHLHE41;;chr11:65667884..65667895,-!p2@FOSL1!0.63!14.46!FOSL1;;chr12:3069037..3069119,+!p2@TEAD4!0.63!12.85!TEAD4;;chr12:104531785..104531812,-!p3@NFYB!0.63!9.64!NFYB;;chr10:77161650..77161661,-!p4@ZNF503!0.63!4.82!ZNF503;;chr17:46127997..46128015,+!p5@NFE2L1!0.63!4.82!NFE2L1;;chr1:23885981..23886002,-!p1@ID3!0.62!673.27!ID3;;chr14:62213827..62213853,+!p6@HIF1A!0.62!4.82!HIF1A;;chr11:125034586..125034604,+!p3@PKNOX2!0.62!3.21!PKNOX2;;chr11:125034605..125034636,+!p2@PKNOX2!0.62!3.21!PKNOX2;;chr11:2292226..2292270,-!p1@ASCL2!0.62!3.21!ASCL2;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.21!CREB3L1;;chr12:54394309..54394336,+!p2@HOXC9!0.62!3.21!HOXC9;;chr14:37131058..37131139,+!p1@PAX9!0.62!3.21!PAX9;;chr1:197886421..197886432,+!p2@LHX9!0.62!3.21!LHX9;;chr1:197886617..197886628,+!p8@LHX9!0.62!3.21!LHX9;;chr1:197886646..197886657,+!p5@LHX9!0.62!3.21!LHX9;;chr1:197886772..197886790,+!p4@LHX9!0.62!3.21!LHX9;;chr1:201979703..201979721,+!p2@ELF3!0.62!3.21!ELF3;;chr9:16727880..16727894,-!p10@BNC2!0.62!3.21!BNC2;;chr9:16727949..16727965,-!p14@BNC2!0.62!3.21!BNC2;;chr9:16727978..16728010,-!p6@BNC2!0.62!3.21!BNC2;;chr15:67430381..67430396,+!p21@SMAD3!0.62!3.21!SMAD3;;chr15:80843484..80843499,+!p5@ARNT2!0.62!3.21!ARNT2;;chr18:53070913..53070933,-!p16@TCF4!0.62!3.21!TCF4;;chr19:13135386..13135435,+!p4@NFIX!0.62!3.21!NFIX;;chr19:13135832..13135853,+!p16@NFIX!0.62!3.21!NFIX;;chr19:13136057..13136085,+!p11@NFIX!0.62!3.21!NFIX;;chr2:176981499..176981522,+!p2@HOXD10!0.62!3.21!HOXD10;;chr2:176987463..176987479,+!p2@HOXD9!0.62!3.21!HOXD9;;chr2:176987485..176987496,+!p3@HOXD9!0.62!3.21!HOXD9;;chr2:19558327..19558334,-!p2@OSR1!0.62!3.21!OSR1;;chr2:46612891..46612907,+!p10@EPAS1!0.62!3.21!EPAS1;;chr3:141087562..141087594,+!p12@ZBTB38!0.62!3.21!ZBTB38;;chr5:158523468..158523481,-!p20@EBF1!0.62!3.21!EBF1;;chr6:85473227..85473243,-!p5@TBX18!0.62!3.21!TBX18;;chr7:1577076..1577095,+!p5@MAFK!0.62!3.21!MAFK;;chr8:11534521..11534533,+!p4@GATA4!0.62!3.21!GATA4;;chr8:25902876..25902936,-!p1@EBF2!0.62!3.21!EBF2;;chr8:72755987..72756002,-!p7@MSC!0.62!3.21!MSC;;chr8:93115584..93115642,-!p5@RUNX1T1!0.62!3.21!RUNX1T1;;chr9:100615499..100615519,+!p1@FOXE1!0.62!3.21!FOXE1;;chr10:63809134..63809145,+!p6@ARID5B!0.61!8.03!ARID5B;;chr2:166326200..166326216,+!p1@CSRNP3!0.61!4.82!CSRNP3;;chr2:238600933..238600985,+!p3@LRRFIP1!0.60!19.28!LRRFIP1;;chr19:13106214..13106382,+!p1@NFIX!0.59!81.95!NFIX;;chr19:45252008..45252024,+!p2@BCL3!0.59!11.25!BCL3;;chr20:42543506..42543549,+!p2@TOX2!0.59!8.03!TOX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.59!4.82!ZBTB38;;chr5:92919375..92919438,+!p6@NR2F1!0.59!3.21!NR2F1;;chrX:128657457..128657475,-!p1@SMARCA1!0.58!40.17!SMARCA1;;chr22:38598086..38598105,+!p1@MAFF!0.58!36.96!MAFF;;chr2:66662281..66662308,+!p1@MEIS1!0.57!11.25!MEIS1;;chr3:187463220..187463232,-!p3@BCL6!0.57!9.64!BCL6;;chr8:145159324..145159333,+!p5@MAF1!0.57!6.43!MAF1;;chr2:101591314..101591333,+!p2@NPAS2!0.57!3.21!NPAS2;;chr3:71631382..71631413,-!p20@FOXP1!0.57!3.21!FOXP1;;chr19:16435625..16435682,+!p1@KLF2!0.56!107.66!KLF2;;chr2:208030647..208030689,-!p1@KLF7!0.56!27.32!KLF7;;chr15:96873984..96873999,+!p3@NR2F2!0.56!24.10!NR2F2;;chr20:42543441..42543497,+!p1@TOX2!0.56!14.46!TOX2;;chr2:178129358..178129403,-!p5@NFE2L2!0.56!12.85!NFE2L2;;chr15:96874927..96874938,+!p8@NR2F2!0.56!6.43!NR2F2;;chr17:7492684..7492778,-!p2@SOX15!0.56!6.43!SOX15;;chr19:17356189..17356221,-!p2@NR2F6!0.56!4.82!NR2F6;;chr20:48807615..48807644,+!p6@CEBPB!0.56!4.82!CEBPB;;chr9:14082760..14082775,-!p6@NFIB!0.56!4.82!NFIB;;chr3:107244229..107244254,+!p3@BBX!0.56!4.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000154;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000630;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914
 |ffid_belonging_in_development=CL:0000222
 |fonse_cell_line=
@@ Line 41: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sertoli%2520Cells%252c%2520donor1.CNhs10851.11255-116F4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sertoli%2520Cells%252c%2520donor1.CNhs10851.11255-116F4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sertoli%2520Cells%252c%2520donor1.CNhs10851.11255-116F4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Sertoli%2520Cells%252c%2520donor1.CNhs10851.11255-116F4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Sertoli%2520Cells%252c%2520donor1.CNhs10851.11255-116F4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11255-116F4
 |is_a=EFO:0002091;;FF:0000161
 |is_obsolete=
 |library_id=CNhs10851
-|library_id_phase_based=1:CNhs10851
+|library_id_phase_based=2:CNhs10851
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11255
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GTAGAG.11255
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11255
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GTAGAG.11255
 |name=Sertoli Cells, donor1
 |namespace=FANTOM5
@@ Line 51: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10851,LSID700,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10003,,,
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@@ Line 67: / Line 82: @@
 |rna_tube_id=116F4
 |rna_weight_ug=21.4
+|rnaseq_library_id=SRhi10003.GTAGAG
 |sample_age=23
 |sample_category=primary cells
@@ Line 90: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11255-116F4;search_select_hide=table117:FF:11255-116F4
 }}

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FF:11255-116F4: Difference between revisions

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Latest revision as of 16:28, 3 June 2020

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