FF:11255-116F4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005843 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005843 | ||
|accession_numbers=CAGE;DRX008450;DRR009322;DRZ000747;DRZ002132;DRZ012097;DRZ013482 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037025;DRR041391;DRZ007033 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000473,UBERON:0001136,UBERON:0000483,UBERON:0000991,UBERON:0001343,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0003133,UBERON:0005904,UBERON:0000487,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0004910,UBERON:0004909,UBERON:0004813,UBERON:0003101,UBERON:0000079 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000511,CL:0000630,CL:0002625,CL:0000154,CL:0000255,CL:0000077,CL:0000216 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000161 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sertoli%2520Cells%252c%2520donor1.CNhs10851.11255-116F4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sertoli%2520Cells%252c%2520donor1.CNhs10851.11255-116F4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sertoli%2520Cells%252c%2520donor1.CNhs10851.11255-116F4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Sertoli%2520Cells%252c%2520donor1.CNhs10851.11255-116F4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Sertoli%2520Cells%252c%2520donor1.CNhs10851.11255-116F4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11255-116F4 | |id=FF:11255-116F4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000161 | ||
|is_obsolete= | |||
|library_id=CNhs10851 | |||
|library_id_phase_based=2:CNhs10851 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11255 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GTAGAG.11255 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11255 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GTAGAG.11255 | |||
|name=Sertoli Cells, donor1 | |name=Sertoli Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10851,LSID700,release009,COMPLETED | |profile_hcage=CNhs10851,LSID700,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116F4 | |rna_tube_id=116F4 | ||
|rna_weight_ug=21.4 | |rna_weight_ug=21.4 | ||
|rnaseq_library_id=SRhi10003.GTAGAG | |||
|sample_age=23 | |sample_age=23 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=MM-HSE-2305 | |sample_cell_catalog=MM-HSE-2305 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.96620582887302e-228!GO:0005737;cytoplasm;4.85659108190568e-186!GO:0043226;organelle;1.6924220817566e-138!GO:0043229;intracellular organelle;3.71575283440761e-138!GO:0044444;cytoplasmic part;2.81744178941001e-136!GO:0043231;intracellular membrane-bound organelle;6.50746974414707e-135!GO:0043227;membrane-bound organelle;1.0989192267793e-134!GO:0044422;organelle part;9.81592447004289e-120!GO:0044446;intracellular organelle part;2.71540530109482e-118!GO:0032991;macromolecular complex;6.13618969492679e-90!GO:0005515;protein binding;1.67660118732137e-79!GO:0030529;ribonucleoprotein complex;1.17474650107778e-72!GO:0044237;cellular metabolic process;1.37159765061086e-62!GO:0044238;primary metabolic process;3.01538209462408e-62!GO:0043233;organelle lumen;2.2984581880275e-58!GO:0031974;membrane-enclosed lumen;2.2984581880275e-58!GO:0043170;macromolecule metabolic process;1.14147795236839e-56!GO:0005739;mitochondrion;1.89891398306399e-55!GO:0003723;RNA binding;4.03728157655713e-54!GO:0019538;protein metabolic process;9.3610628789041e-54!GO:0044428;nuclear part;3.26415200337211e-52!GO:0044260;cellular macromolecule metabolic process;2.07321296844339e-48!GO:0043234;protein complex;2.32887306950949e-47!GO:0044267;cellular protein metabolic process;5.24775446473489e-47!GO:0005840;ribosome;1.27049061955155e-46!GO:0031090;organelle membrane;7.0434277165949e-46!GO:0006412;translation;3.04733719168332e-45!GO:0016043;cellular component organization and biogenesis;2.92729170503481e-42!GO:0003735;structural constituent of ribosome;2.88563877106133e-41!GO:0015031;protein transport;3.85948935972741e-40!GO:0005829;cytosol;3.85948935972741e-40!GO:0033036;macromolecule localization;8.73208926658904e-40!GO:0045184;establishment of protein localization;9.78338683253782e-38!GO:0009058;biosynthetic process;2.06767645414307e-37!GO:0044429;mitochondrial part;4.78817313959023e-37!GO:0008104;protein localization;6.54833203012018e-37!GO:0044249;cellular biosynthetic process;1.52595760536205e-36!GO:0033279;ribosomal subunit;2.7807445648432e-36!GO:0005634;nucleus;3.18019600175795e-36!GO:0009059;macromolecule biosynthetic process;9.08142132325973e-36!GO:0006396;RNA processing;1.69769465386736e-35!GO:0046907;intracellular transport;5.69011276238877e-34!GO:0031981;nuclear lumen;1.445309525258e-32!GO:0016071;mRNA metabolic process;2.06968307246068e-32!GO:0031967;organelle envelope;3.17503553904106e-32!GO:0031975;envelope;6.23127041241742e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.21130853507849e-28!GO:0006397;mRNA processing;8.21130853507849e-28!GO:0043228;non-membrane-bound organelle;1.71875483010747e-27!GO:0043232;intracellular non-membrane-bound organelle;1.71875483010747e-27!GO:0065003;macromolecular complex assembly;2.30724883065662e-27!GO:0008380;RNA splicing;3.7065911154456e-27!GO:0006886;intracellular protein transport;1.26408650226472e-26!GO:0006996;organelle organization and biogenesis;7.23343458891827e-25!GO:0022607;cellular component assembly;6.58665354918221e-24!GO:0005783;endoplasmic reticulum;6.86649035689839e-24!GO:0005740;mitochondrial envelope;1.22583430683292e-23!GO:0044445;cytosolic part;1.75884625073858e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.41749761969043e-23!GO:0031966;mitochondrial membrane;1.73655380375869e-22!GO:0006457;protein folding;4.40039236329811e-22!GO:0051641;cellular localization;5.94604715910592e-22!GO:0051649;establishment of cellular localization;6.81789744817677e-22!GO:0019866;organelle inner membrane;1.04402316042619e-21!GO:0012505;endomembrane system;2.59354345017973e-21!GO:0043283;biopolymer metabolic process;4.66014304265211e-21!GO:0000166;nucleotide binding;5.63389300931783e-21!GO:0005654;nucleoplasm;1.28932413379806e-20!GO:0005794;Golgi apparatus;2.22181378330828e-20!GO:0006119;oxidative phosphorylation;2.5363139717866e-20!GO:0005743;mitochondrial inner membrane;3.81173455106377e-20!GO:0005681;spliceosome;6.88377345579563e-20!GO:0048770;pigment granule;1.02777135443755e-19!GO:0042470;melanosome;1.02777135443755e-19!GO:0016462;pyrophosphatase activity;1.07181947530437e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.62865501934228e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;2.12319346887952e-19!GO:0017111;nucleoside-triphosphatase activity;2.1658523345236e-19!GO:0015935;small ribosomal subunit;8.1171874978277e-19!GO:0015934;large ribosomal subunit;2.09324630765731e-18!GO:0007049;cell cycle;4.74223079798197e-18!GO:0044455;mitochondrial membrane part;7.15855663222442e-18!GO:0044432;endoplasmic reticulum part;7.22825014709616e-18!GO:0010467;gene expression;2.98804786053981e-17!GO:0044451;nucleoplasm part;8.07176879378107e-17!GO:0006259;DNA metabolic process;2.01335059326989e-16!GO:0022618;protein-RNA complex assembly;3.35177758928568e-16!GO:0031980;mitochondrial lumen;4.36369964007828e-16!GO:0005759;mitochondrial matrix;4.36369964007828e-16!GO:0008134;transcription factor binding;6.01656647487897e-16!GO:0048193;Golgi vesicle transport;6.74530111430853e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.61520503399938e-15!GO:0005746;mitochondrial respiratory chain;1.67740264424457e-15!GO:0017076;purine nucleotide binding;1.95792841175772e-15!GO:0032553;ribonucleotide binding;3.31717033106509e-15!GO:0032555;purine ribonucleotide binding;3.31717033106509e-15!GO:0044265;cellular macromolecule catabolic process;6.19548037721227e-15!GO:0006512;ubiquitin cycle;9.31015407867832e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.18100069539674e-14!GO:0016874;ligase activity;1.25213427950278e-14!GO:0051186;cofactor metabolic process;2.08986884558334e-14!GO:0008135;translation factor activity, nucleic acid binding;2.32411708242274e-14!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.18421339906524e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.22276322598214e-14!GO:0051082;unfolded protein binding;6.72719431533537e-14!GO:0022402;cell cycle process;8.16048981909413e-14!GO:0016192;vesicle-mediated transport;9.56601345875459e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.0981072127465e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.62335890415693e-13!GO:0003954;NADH dehydrogenase activity;2.62335890415693e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.62335890415693e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;2.62602815760076e-13!GO:0043285;biopolymer catabolic process;3.00505670231274e-13!GO:0044248;cellular catabolic process;3.6806147520313e-13!GO:0009057;macromolecule catabolic process;4.80053795911086e-13!GO:0000278;mitotic cell cycle;4.8539112825966e-13!GO:0019941;modification-dependent protein catabolic process;4.88438389534044e-13!GO:0043632;modification-dependent macromolecule catabolic process;4.88438389534044e-13!GO:0006511;ubiquitin-dependent protein catabolic process;5.78982859058812e-13!GO:0006605;protein targeting;6.07977199130526e-13!GO:0044257;cellular protein catabolic process;6.07977199130526e-13!GO:0005761;mitochondrial ribosome;1.09517827327302e-12!GO:0000313;organellar ribosome;1.09517827327302e-12!GO:0005730;nucleolus;2.08353868719784e-12!GO:0030554;adenyl nucleotide binding;2.24454517262345e-12!GO:0005793;ER-Golgi intermediate compartment;2.427046906356e-12!GO:0032559;adenyl ribonucleotide binding;2.65554338899611e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.70653429092474e-12!GO:0005524;ATP binding;3.08475099643729e-12!GO:0043412;biopolymer modification;4.5967555935913e-12!GO:0005789;endoplasmic reticulum membrane;9.60400392223098e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.17634109990813e-11!GO:0042773;ATP synthesis coupled electron transport;1.17634109990813e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.21170754926018e-11!GO:0012501;programmed cell death;1.44713103732794e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.72600842739098e-11!GO:0045271;respiratory chain complex I;1.72600842739098e-11!GO:0005747;mitochondrial respiratory chain complex I;1.72600842739098e-11!GO:0003743;translation initiation factor activity;1.81836162321258e-11!GO:0006732;coenzyme metabolic process;1.8260668156182e-11!GO:0006915;apoptosis;2.59474697321683e-11!GO:0030163;protein catabolic process;3.30310883511899e-11!GO:0006464;protein modification process;4.48899506000292e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.96158066998366e-11!GO:0003712;transcription cofactor activity;8.14669953545069e-11!GO:0006413;translational initiation;8.95488937894833e-11!GO:0009055;electron carrier activity;8.95488937894833e-11!GO:0016887;ATPase activity;1.1691253808072e-10!GO:0048523;negative regulation of cellular process;2.05059597559513e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.23446917371913e-10!GO:0000375;RNA splicing, via transesterification reactions;2.23446917371913e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.23446917371913e-10!GO:0042623;ATPase activity, coupled;3.31164426731642e-10!GO:0008219;cell death;4.48200979573958e-10!GO:0016265;death;4.48200979573958e-10!GO:0016491;oxidoreductase activity;1.17754480023471e-09!GO:0006913;nucleocytoplasmic transport;1.26559899093229e-09!GO:0009259;ribonucleotide metabolic process;1.49047885603258e-09!GO:0043687;post-translational protein modification;1.93380646441365e-09!GO:0000087;M phase of mitotic cell cycle;2.01839269200851e-09!GO:0006446;regulation of translational initiation;2.16742467404891e-09!GO:0051726;regulation of cell cycle;2.20646750747304e-09!GO:0007067;mitosis;2.30660472508333e-09!GO:0005635;nuclear envelope;2.57018001208094e-09!GO:0051169;nuclear transport;2.57018001208094e-09!GO:0000074;regulation of progression through cell cycle;2.71687229142936e-09!GO:0031965;nuclear membrane;3.79259693016756e-09!GO:0009150;purine ribonucleotide metabolic process;4.41521558867291e-09!GO:0006974;response to DNA damage stimulus;4.41521558867291e-09!GO:0006163;purine nucleotide metabolic process;6.08111689171436e-09!GO:0008565;protein transporter activity;6.18455137607425e-09!GO:0016604;nuclear body;6.35477631653981e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.62251191163565e-09!GO:0048519;negative regulation of biological process;6.62671028248404e-09!GO:0005788;endoplasmic reticulum lumen;6.6655804445098e-09!GO:0016023;cytoplasmic membrane-bound vesicle;7.8603830716376e-09!GO:0031988;membrane-bound vesicle;7.95405329513625e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.21426592667316e-08!GO:0009260;ribonucleotide biosynthetic process;1.35647461722477e-08!GO:0008639;small protein conjugating enzyme activity;1.48798303853771e-08!GO:0051301;cell division;1.57994859052299e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.58907777998699e-08!GO:0006461;protein complex assembly;1.82166956951393e-08!GO:0030120;vesicle coat;2.09089877355808e-08!GO:0030662;coated vesicle membrane;2.09089877355808e-08!GO:0006164;purine nucleotide biosynthetic process;2.29660117863321e-08!GO:0009060;aerobic respiration;2.32099882295919e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.52013229121959e-08!GO:0004842;ubiquitin-protein ligase activity;2.74206806047363e-08!GO:0009141;nucleoside triphosphate metabolic process;3.67996276304444e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.67996276304444e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.1273319355267e-08!GO:0019787;small conjugating protein ligase activity;4.36800191012723e-08!GO:0042254;ribosome biogenesis and assembly;4.69283418176791e-08!GO:0044453;nuclear membrane part;4.72426733472912e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.05675521183336e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.05675521183336e-08!GO:0015986;ATP synthesis coupled proton transport;5.28956857088897e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.28956857088897e-08!GO:0045333;cellular respiration;5.38024913834207e-08!GO:0044431;Golgi apparatus part;5.94966333118614e-08!GO:0009056;catabolic process;6.37307676978579e-08!GO:0005694;chromosome;6.40338058209932e-08!GO:0022403;cell cycle phase;8.57616760466003e-08!GO:0019829;cation-transporting ATPase activity;9.62219488781117e-08!GO:0003924;GTPase activity;9.71780052828491e-08!GO:0046034;ATP metabolic process;1.1093726818552e-07!GO:0008026;ATP-dependent helicase activity;1.12799918149478e-07!GO:0048475;coated membrane;1.15235584061987e-07!GO:0030117;membrane coat;1.15235584061987e-07!GO:0043069;negative regulation of programmed cell death;1.28196573271163e-07!GO:0051276;chromosome organization and biogenesis;1.36119597267532e-07!GO:0043067;regulation of programmed cell death;1.90928827229305e-07!GO:0042981;regulation of apoptosis;1.95608938696608e-07!GO:0051246;regulation of protein metabolic process;1.98317603068477e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.01910928089561e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.01910928089561e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.12566463625416e-07!GO:0043066;negative regulation of apoptosis;2.37626364598086e-07!GO:0051187;cofactor catabolic process;2.56621971433467e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.78108576822978e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.78108576822978e-07!GO:0016607;nuclear speck;2.99175512594795e-07!GO:0004386;helicase activity;3.01238062573685e-07!GO:0005768;endosome;3.11533103104508e-07!GO:0044427;chromosomal part;3.11533103104508e-07!GO:0016787;hydrolase activity;3.14858596089936e-07!GO:0017038;protein import;3.29841556504269e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.34996364598487e-07!GO:0016881;acid-amino acid ligase activity;3.45033982396052e-07!GO:0006091;generation of precursor metabolites and energy;3.8092753894815e-07!GO:0031982;vesicle;3.8092753894815e-07!GO:0006399;tRNA metabolic process;4.08951114451237e-07!GO:0006099;tricarboxylic acid cycle;4.758820894617e-07!GO:0046356;acetyl-CoA catabolic process;4.758820894617e-07!GO:0031410;cytoplasmic vesicle;4.80649036517751e-07!GO:0006754;ATP biosynthetic process;4.93230325406421e-07!GO:0006753;nucleoside phosphate metabolic process;4.93230325406421e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;5.45521741436085e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.48385476248664e-07!GO:0006281;DNA repair;5.71461827213192e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.00845214415967e-07!GO:0006366;transcription from RNA polymerase II promoter;6.54240472646732e-07!GO:0009109;coenzyme catabolic process;6.75660134454876e-07!GO:0015630;microtubule cytoskeleton;6.79518452500559e-07!GO:0003714;transcription corepressor activity;7.46393568587681e-07!GO:0009719;response to endogenous stimulus;7.70475019124689e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.90897726013231e-07!GO:0004812;aminoacyl-tRNA ligase activity;7.90897726013231e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.90897726013231e-07!GO:0051188;cofactor biosynthetic process;9.1600994965988e-07!GO:0043038;amino acid activation;9.29875064820979e-07!GO:0006418;tRNA aminoacylation for protein translation;9.29875064820979e-07!GO:0043039;tRNA aminoacylation;9.29875064820979e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.04234979773387e-06!GO:0006323;DNA packaging;1.28744238057445e-06!GO:0005798;Golgi-associated vesicle;1.49284488578276e-06!GO:0006084;acetyl-CoA metabolic process;1.74202365610816e-06!GO:0016564;transcription repressor activity;1.74589832344665e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.58060319864737e-06!GO:0006916;anti-apoptosis;2.80878576430896e-06!GO:0006333;chromatin assembly or disassembly;3.59692078036724e-06!GO:0065004;protein-DNA complex assembly;4.14168499973523e-06!GO:0045786;negative regulation of progression through cell cycle;4.34151199036889e-06!GO:0030532;small nuclear ribonucleoprotein complex;5.16405411428708e-06!GO:0015980;energy derivation by oxidation of organic compounds;5.41337882694364e-06!GO:0065002;intracellular protein transport across a membrane;5.46352761508465e-06!GO:0005643;nuclear pore;5.46352761508465e-06!GO:0009117;nucleotide metabolic process;5.72052733342774e-06!GO:0006752;group transfer coenzyme metabolic process;5.81656682757643e-06!GO:0000139;Golgi membrane;6.10285507954082e-06!GO:0016853;isomerase activity;6.32237252224229e-06!GO:0006613;cotranslational protein targeting to membrane;6.70796483511181e-06!GO:0005773;vacuole;7.32995883048324e-06!GO:0051789;response to protein stimulus;7.90837411469676e-06!GO:0006986;response to unfolded protein;7.90837411469676e-06!GO:0051170;nuclear import;8.25254657319167e-06!GO:0004298;threonine endopeptidase activity;8.33318974638534e-06!GO:0000151;ubiquitin ligase complex;9.37416208283616e-06!GO:0006793;phosphorus metabolic process;9.68128816498187e-06!GO:0006796;phosphate metabolic process;9.68128816498187e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.02902374115049e-05!GO:0005667;transcription factor complex;1.11896241888088e-05!GO:0000279;M phase;1.18088763889815e-05!GO:0016310;phosphorylation;1.21925259101736e-05!GO:0006260;DNA replication;1.23046863234343e-05!GO:0045454;cell redox homeostasis;1.28751917496672e-05!GO:0006606;protein import into nucleus;1.33585628771034e-05!GO:0009108;coenzyme biosynthetic process;1.38881039477035e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.48116996393483e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.56339490117322e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.57075273932835e-05!GO:0046930;pore complex;1.65174089969284e-05!GO:0016859;cis-trans isomerase activity;1.7095943369951e-05!GO:0044440;endosomal part;1.7095943369951e-05!GO:0010008;endosome membrane;1.7095943369951e-05!GO:0008361;regulation of cell size;1.7254318596815e-05!GO:0005905;coated pit;1.79454714747803e-05!GO:0005525;GTP binding;1.81691763385141e-05!GO:0030867;rough endoplasmic reticulum membrane;1.94244016167671e-05!GO:0016049;cell growth;1.95474565459777e-05!GO:0032446;protein modification by small protein conjugation;2.12925648572442e-05!GO:0045259;proton-transporting ATP synthase complex;2.28473916015476e-05!GO:0031252;leading edge;2.54041685623503e-05!GO:0000785;chromatin;2.56551565166235e-05!GO:0044262;cellular carbohydrate metabolic process;2.56551565166235e-05!GO:0005819;spindle;2.57960117292098e-05!GO:0016567;protein ubiquitination;2.59256032811261e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.82932802401691e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.03665312906276e-05!GO:0048522;positive regulation of cellular process;3.37957432287724e-05!GO:0000323;lytic vacuole;3.46443984254914e-05!GO:0005764;lysosome;3.46443984254914e-05!GO:0006612;protein targeting to membrane;3.5772723212101e-05!GO:0030133;transport vesicle;3.6924732647572e-05!GO:0001558;regulation of cell growth;3.6924732647572e-05!GO:0000245;spliceosome assembly;3.74032405793379e-05!GO:0005048;signal sequence binding;3.95282448711242e-05!GO:0003697;single-stranded DNA binding;4.01296296903696e-05!GO:0006334;nucleosome assembly;4.3246427127369e-05!GO:0003676;nucleic acid binding;4.65400445374131e-05!GO:0003724;RNA helicase activity;4.94257285793434e-05!GO:0016740;transferase activity;5.1569067505172e-05!GO:0031324;negative regulation of cellular metabolic process;5.54546120430712e-05!GO:0050657;nucleic acid transport;5.58781365007906e-05!GO:0051236;establishment of RNA localization;5.58781365007906e-05!GO:0050658;RNA transport;5.58781365007906e-05!GO:0006403;RNA localization;6.20281386504824e-05!GO:0043623;cellular protein complex assembly;6.76883608471393e-05!GO:0019843;rRNA binding;6.89721562608709e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.89721562608709e-05!GO:0007005;mitochondrion organization and biogenesis;7.19375733414194e-05!GO:0005813;centrosome;8.22744291932898e-05!GO:0003713;transcription coactivator activity;8.43596972540572e-05!GO:0006364;rRNA processing;9.2104188814271e-05!GO:0008654;phospholipid biosynthetic process;9.35153712278605e-05!GO:0043566;structure-specific DNA binding;9.47496244443457e-05!GO:0032561;guanyl ribonucleotide binding;9.55737651732995e-05!GO:0019001;guanyl nucleotide binding;9.55737651732995e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;9.60943818424378e-05!GO:0015399;primary active transmembrane transporter activity;9.60943818424378e-05!GO:0005791;rough endoplasmic reticulum;9.99179908388699e-05!GO:0030029;actin filament-based process;0.000105359203935476!GO:0005769;early endosome;0.000105969715991653!GO:0031968;organelle outer membrane;0.000119734098055162!GO:0007243;protein kinase cascade;0.000119957819378027!GO:0007010;cytoskeleton organization and biogenesis;0.000129846246304497!GO:0033116;ER-Golgi intermediate compartment membrane;0.000132076764150887!GO:0016072;rRNA metabolic process;0.000134301248328072!GO:0005762;mitochondrial large ribosomal subunit;0.000140879095421797!GO:0000315;organellar large ribosomal subunit;0.000140879095421797!GO:0019867;outer membrane;0.000153060406228034!GO:0005815;microtubule organizing center;0.000155581564488991!GO:0016563;transcription activator activity;0.000160658359850389!GO:0031497;chromatin assembly;0.000187175680441403!GO:0005770;late endosome;0.000195423072321889!GO:0016044;membrane organization and biogenesis;0.000239198676820443!GO:0043021;ribonucleoprotein binding;0.000250514530499617!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000250897735825414!GO:0004576;oligosaccharyl transferase activity;0.000271664154948364!GO:0008250;oligosaccharyl transferase complex;0.000312197097134549!GO:0051329;interphase of mitotic cell cycle;0.000358491623824682!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000372301076603628!GO:0016568;chromatin modification;0.000398627051672419!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000421048118883803!GO:0048518;positive regulation of biological process;0.000427023603172135!GO:0005885;Arp2/3 protein complex;0.000427621407260853!GO:0005741;mitochondrial outer membrane;0.00046047080983604!GO:0009892;negative regulation of metabolic process;0.000503269895027161!GO:0000314;organellar small ribosomal subunit;0.000511927538473431!GO:0005763;mitochondrial small ribosomal subunit;0.000511927538473431!GO:0043492;ATPase activity, coupled to movement of substances;0.000540611417388226!GO:0030659;cytoplasmic vesicle membrane;0.000592144656914088!GO:0051325;interphase;0.000643698049060892!GO:0006950;response to stress;0.000649070738053827!GO:0018196;peptidyl-asparagine modification;0.000652151227486124!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000652151227486124!GO:0030663;COPI coated vesicle membrane;0.000705294508319379!GO:0030126;COPI vesicle coat;0.000705294508319379!GO:0008092;cytoskeletal protein binding;0.000722092899985045!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000722823245729956!GO:0040008;regulation of growth;0.000729783426192893!GO:0051920;peroxiredoxin activity;0.000819269345209358!GO:0016070;RNA metabolic process;0.000867265202703355!GO:0051028;mRNA transport;0.000878914260560066!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000923568168498733!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00103333878169141!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00108210253869189!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00108843546193514!GO:0008186;RNA-dependent ATPase activity;0.00108957021536188!GO:0016779;nucleotidyltransferase activity;0.00112268226504677!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00126880828496482!GO:0030137;COPI-coated vesicle;0.00127970646424261!GO:0006892;post-Golgi vesicle-mediated transport;0.00134493513644196!GO:0007051;spindle organization and biogenesis;0.00142573134398568!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00145104382096483!GO:0030132;clathrin coat of coated pit;0.00146611802949926!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00157601341393317!GO:0051427;hormone receptor binding;0.00157601341393317!GO:0048471;perinuclear region of cytoplasm;0.00161779422041647!GO:0044433;cytoplasmic vesicle part;0.00163263249193511!GO:0003729;mRNA binding;0.00173198939282805!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00183065232464346!GO:0030658;transport vesicle membrane;0.0018588600401869!GO:0019752;carboxylic acid metabolic process;0.00196325668740052!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00203137924485936!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00203137924485936!GO:0042802;identical protein binding;0.0020412359596766!GO:0030118;clathrin coat;0.00210859848954752!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00210859848954752!GO:0006082;organic acid metabolic process;0.00213975359656707!GO:0065009;regulation of a molecular function;0.00216401092524135!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00218329829543685!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00218329829543685!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00218329829543685!GO:0006818;hydrogen transport;0.00220274459998039!GO:0004177;aminopeptidase activity;0.0022658183418182!GO:0015992;proton transport;0.00227752659911023!GO:0043681;protein import into mitochondrion;0.00228695536377911!GO:0019899;enzyme binding;0.00235778066112181!GO:0022890;inorganic cation transmembrane transporter activity;0.00249372978734169!GO:0009165;nucleotide biosynthetic process;0.0025445990485161!GO:0048500;signal recognition particle;0.00260264457392082!GO:0035257;nuclear hormone receptor binding;0.00284249706063235!GO:0046474;glycerophospholipid biosynthetic process;0.00286876739806079!GO:0045792;negative regulation of cell size;0.00290071162243342!GO:0004004;ATP-dependent RNA helicase activity;0.00290071162243342!GO:0006118;electron transport;0.0029457259094158!GO:0030308;negative regulation of cell growth;0.00295862039765379!GO:0016197;endosome transport;0.00295862039765379!GO:0012506;vesicle membrane;0.00327501980962016!GO:0045045;secretory pathway;0.00332525188136383!GO:0048487;beta-tubulin binding;0.00349758839536102!GO:0030134;ER to Golgi transport vesicle;0.00381037336028721!GO:0008632;apoptotic program;0.0038812559485607!GO:0006891;intra-Golgi vesicle-mediated transport;0.00419458687219885!GO:0046489;phosphoinositide biosynthetic process;0.00428159730903537!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00439113799223345!GO:0031418;L-ascorbic acid binding;0.00462652977074213!GO:0031543;peptidyl-proline dioxygenase activity;0.00465489080448535!GO:0046483;heterocycle metabolic process;0.00470992201301792!GO:0051287;NAD binding;0.00470992201301792!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00470992201301792!GO:0051168;nuclear export;0.0047209231518264!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00474668105972888!GO:0045047;protein targeting to ER;0.00474668105972888!GO:0030660;Golgi-associated vesicle membrane;0.00478523142679434!GO:0030176;integral to endoplasmic reticulum membrane;0.00478523142679434!GO:0015631;tubulin binding;0.00481582387954179!GO:0003899;DNA-directed RNA polymerase activity;0.00502842608359253!GO:0016363;nuclear matrix;0.005100980395756!GO:0030027;lamellipodium;0.00518122209806753!GO:0008312;7S RNA binding;0.00527021954737664!GO:0006979;response to oxidative stress;0.00534615442048596!GO:0016481;negative regulation of transcription;0.0053686898259593!GO:0008139;nuclear localization sequence binding;0.00545011087754203!GO:0007006;mitochondrial membrane organization and biogenesis;0.00556420487178072!GO:0001666;response to hypoxia;0.00564162720717303!GO:0031072;heat shock protein binding;0.0056844623891419!GO:0017166;vinculin binding;0.0056844623891419!GO:0000075;cell cycle checkpoint;0.00573510634206293!GO:0005581;collagen;0.00591476988849592!GO:0031901;early endosome membrane;0.0062332576629378!GO:0006740;NADPH regeneration;0.0062332576629378!GO:0006098;pentose-phosphate shunt;0.0062332576629378!GO:0006402;mRNA catabolic process;0.00634965946300498!GO:0006509;membrane protein ectodomain proteolysis;0.00648283381626291!GO:0033619;membrane protein proteolysis;0.00648283381626291!GO:0030125;clathrin vesicle coat;0.00705154799981674!GO:0030665;clathrin coated vesicle membrane;0.00705154799981674!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00707562081468824!GO:0007050;cell cycle arrest;0.00708750309797273!GO:0050794;regulation of cellular process;0.00713139187612773!GO:0051252;regulation of RNA metabolic process;0.00724241510546757!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00724754964897906!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00724754964897906!GO:0043488;regulation of mRNA stability;0.00724754964897906!GO:0043487;regulation of RNA stability;0.00724754964897906!GO:0007264;small GTPase mediated signal transduction;0.00744850494647989!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00764701741587609!GO:0015002;heme-copper terminal oxidase activity;0.00764701741587609!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00764701741587609!GO:0004129;cytochrome-c oxidase activity;0.00764701741587609!GO:0006007;glucose catabolic process;0.00826589320706438!GO:0000082;G1/S transition of mitotic cell cycle;0.00827878031638297!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0085057382210184!GO:0003711;transcription elongation regulator activity;0.0087198182239758!GO:0008180;signalosome;0.00886877411284475!GO:0007040;lysosome organization and biogenesis;0.00903496783998137!GO:0030119;AP-type membrane coat adaptor complex;0.00906838033909596!GO:0030127;COPII vesicle coat;0.00909917579783277!GO:0012507;ER to Golgi transport vesicle membrane;0.00909917579783277!GO:0009967;positive regulation of signal transduction;0.00911408445405209!GO:0004674;protein serine/threonine kinase activity;0.00912060971072627!GO:0051540;metal cluster binding;0.00963230490064192!GO:0051536;iron-sulfur cluster binding;0.00963230490064192!GO:0000776;kinetochore;0.00994941141428843!GO:0043284;biopolymer biosynthetic process;0.0100945132438491!GO:0008047;enzyme activator activity;0.0103395205947792!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0104793838533294!GO:0035258;steroid hormone receptor binding;0.0105924098267785!GO:0019798;procollagen-proline dioxygenase activity;0.0109420533849816!GO:0000775;chromosome, pericentric region;0.0112150775969163!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0112360371991721!GO:0050662;coenzyme binding;0.0117172044593481!GO:0000059;protein import into nucleus, docking;0.0117214085500829!GO:0045926;negative regulation of growth;0.0118737068899196!GO:0005862;muscle thin filament tropomyosin;0.0120438220545425!GO:0003746;translation elongation factor activity;0.0122604302521764!GO:0030041;actin filament polymerization;0.0123685333916008!GO:0045941;positive regulation of transcription;0.0126276947616531!GO:0006626;protein targeting to mitochondrion;0.0126276947616531!GO:0005869;dynactin complex;0.0130454001215445!GO:0006595;polyamine metabolic process;0.0130454001215445!GO:0032940;secretion by cell;0.0133728983687081!GO:0005975;carbohydrate metabolic process;0.0135663698870517!GO:0051087;chaperone binding;0.0135710251559998!GO:0030521;androgen receptor signaling pathway;0.0136048711746634!GO:0046467;membrane lipid biosynthetic process;0.0139849521573889!GO:0048468;cell development;0.0139881194348584!GO:0008154;actin polymerization and/or depolymerization;0.0146275536828438!GO:0051128;regulation of cellular component organization and biogenesis;0.0146442277252436!GO:0008234;cysteine-type peptidase activity;0.0149090331159863!GO:0006383;transcription from RNA polymerase III promoter;0.0149392152037627!GO:0006401;RNA catabolic process;0.0151422320990582!GO:0006839;mitochondrial transport;0.0152958551525171!GO:0033673;negative regulation of kinase activity;0.0153654625341227!GO:0006469;negative regulation of protein kinase activity;0.0153654625341227!GO:0004197;cysteine-type endopeptidase activity;0.0154859681449732!GO:0005586;collagen type III;0.0162731141680581!GO:0006672;ceramide metabolic process;0.0164347001277555!GO:0030131;clathrin adaptor complex;0.0168161376048125!GO:0030032;lamellipodium biogenesis;0.0168161376048125!GO:0000786;nucleosome;0.0168296949772075!GO:0003779;actin binding;0.0168416970184527!GO:0006414;translational elongation;0.0169274737541127!GO:0009112;nucleobase metabolic process;0.0169280784545058!GO:0005874;microtubule;0.0172003560358036!GO:0051052;regulation of DNA metabolic process;0.0172897614594426!GO:0016860;intramolecular oxidoreductase activity;0.0174820665002872!GO:0016251;general RNA polymerase II transcription factor activity;0.0178303564201582!GO:0005684;U2-dependent spliceosome;0.0183455995560554!GO:0051348;negative regulation of transferase activity;0.0184756497473034!GO:0007033;vacuole organization and biogenesis;0.0186815683368918!GO:0007030;Golgi organization and biogenesis;0.0187518764625881!GO:0006497;protein amino acid lipidation;0.0188830052973625!GO:0016272;prefoldin complex;0.0191526040249203!GO:0008610;lipid biosynthetic process;0.0192835663881506!GO:0043433;negative regulation of transcription factor activity;0.0193013443167423!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0193215024865713!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0193215024865713!GO:0003690;double-stranded DNA binding;0.0195794001266889!GO:0006984;ER-nuclear signaling pathway;0.0198025858768697!GO:0006739;NADP metabolic process;0.0200026741446655!GO:0051101;regulation of DNA binding;0.0207219302017399!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0209528557775577!GO:0005637;nuclear inner membrane;0.0212095055906207!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0213147733465484!GO:0019318;hexose metabolic process;0.021354889708533!GO:0045893;positive regulation of transcription, DNA-dependent;0.0217032574139896!GO:0006897;endocytosis;0.0217344503437301!GO:0010324;membrane invagination;0.0217344503437301!GO:0043022;ribosome binding;0.0220247760105633!GO:0031124;mRNA 3'-end processing;0.0224411665715066!GO:0006650;glycerophospholipid metabolic process;0.0229825618293926!GO:0006354;RNA elongation;0.0232194283753446!GO:0005996;monosaccharide metabolic process;0.0233001658523052!GO:0030145;manganese ion binding;0.0233219288700085!GO:0031529;ruffle organization and biogenesis;0.0233716741227758!GO:0003756;protein disulfide isomerase activity;0.0237139268932508!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0237139268932508!GO:0000049;tRNA binding;0.0237139268932508!GO:0022415;viral reproductive process;0.0238655683077745!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0242036889967608!GO:0032984;macromolecular complex disassembly;0.024391864295266!GO:0030833;regulation of actin filament polymerization;0.0248636213168855!GO:0006417;regulation of translation;0.0249438083177188!GO:0043065;positive regulation of apoptosis;0.0251524259329658!GO:0031625;ubiquitin protein ligase binding;0.0253204615931161!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0253390495060905!GO:0000910;cytokinesis;0.0256717552185777!GO:0003682;chromatin binding;0.0260747279360685!GO:0050811;GABA receptor binding;0.0263516442264782!GO:0000339;RNA cap binding;0.0264508196917899!GO:0006378;mRNA polyadenylation;0.0264508196917899!GO:0001527;microfibril;0.0266551714433097!GO:0005832;chaperonin-containing T-complex;0.0273094237142501!GO:0007052;mitotic spindle organization and biogenesis;0.0284365740201881!GO:0044420;extracellular matrix part;0.0286418830972318!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0289399002104084!GO:0030880;RNA polymerase complex;0.0289681463826898!GO:0016584;nucleosome positioning;0.0299598953814322!GO:0043068;positive regulation of programmed cell death;0.0304433814649605!GO:0046519;sphingoid metabolic process;0.030828687378497!GO:0035035;histone acetyltransferase binding;0.0308684638259143!GO:0050681;androgen receptor binding;0.0309261316867793!GO:0030518;steroid hormone receptor signaling pathway;0.0314785420694312!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.031627013425386!GO:0033043;regulation of organelle organization and biogenesis;0.031627013425386!GO:0000118;histone deacetylase complex;0.0318727577039033!GO:0004287;prolyl oligopeptidase activity;0.032748269176528!GO:0006261;DNA-dependent DNA replication;0.0330609019667676!GO:0008147;structural constituent of bone;0.0330625397478102!GO:0003678;DNA helicase activity;0.0335098953299827!GO:0006520;amino acid metabolic process;0.0343863622494691!GO:0009889;regulation of biosynthetic process;0.0348888859425829!GO:0007034;vacuolar transport;0.0353486486466082!GO:0007242;intracellular signaling cascade;0.0355907808213926!GO:0030384;phosphoinositide metabolic process;0.0365886361750613!GO:0031272;regulation of pseudopodium formation;0.036778943981509!GO:0031269;pseudopodium formation;0.036778943981509!GO:0031344;regulation of cell projection organization and biogenesis;0.036778943981509!GO:0031268;pseudopodium organization and biogenesis;0.036778943981509!GO:0031346;positive regulation of cell projection organization and biogenesis;0.036778943981509!GO:0031274;positive regulation of pseudopodium formation;0.036778943981509!GO:0022411;cellular component disassembly;0.0370227143199635!GO:0001872;zymosan binding;0.0370227143199635!GO:0001878;response to yeast;0.0370227143199635!GO:0008538;proteasome activator activity;0.0370227143199635!GO:0022408;negative regulation of cell-cell adhesion;0.0371571606629056!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0372754852069004!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0372754852069004!GO:0007093;mitotic cell cycle checkpoint;0.037342240631818!GO:0005784;translocon complex;0.0373644960406813!GO:0048037;cofactor binding;0.0377623210412883!GO:0043241;protein complex disassembly;0.0385503323542634!GO:0003923;GPI-anchor transamidase activity;0.0386040228447846!GO:0016255;attachment of GPI anchor to protein;0.0386040228447846!GO:0042765;GPI-anchor transamidase complex;0.0386040228447846!GO:0006506;GPI anchor biosynthetic process;0.0387153896819394!GO:0043086;negative regulation of catalytic activity;0.0401614341184656!GO:0051235;maintenance of localization;0.0401803622219473!GO:0008033;tRNA processing;0.0403842406083494!GO:0045936;negative regulation of phosphate metabolic process;0.0403938757935739!GO:0050790;regulation of catalytic activity;0.0408838579019675!GO:0006607;NLS-bearing substrate import into nucleus;0.041538752747489!GO:0006352;transcription initiation;0.0415825547835499!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0419608766286037!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0423224352496717!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0426279601042147!GO:0006376;mRNA splice site selection;0.0427103912393506!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0427103912393506!GO:0005657;replication fork;0.042721954697671!GO:0006778;porphyrin metabolic process;0.0438448276183822!GO:0033013;tetrapyrrole metabolic process;0.0438448276183822!GO:0030508;thiol-disulfide exchange intermediate activity;0.0439355554959508!GO:0031371;ubiquitin conjugating enzyme complex;0.0447162275631707!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0451806265424089!GO:0006505;GPI anchor metabolic process;0.0456069807272618!GO:0042158;lipoprotein biosynthetic process;0.0456674380716549!GO:0030503;regulation of cell redox homeostasis;0.045917645382274!GO:0006302;double-strand break repair;0.0459626929118944!GO:0006518;peptide metabolic process;0.0459626929118944!GO:0030140;trans-Golgi network transport vesicle;0.0461483748244106!GO:0031326;regulation of cellular biosynthetic process;0.0461526562896146!GO:0051098;regulation of binding;0.0462993584190718!GO:0006693;prostaglandin metabolic process;0.0462993584190718!GO:0006692;prostanoid metabolic process;0.0462993584190718!GO:0001726;ruffle;0.0468424931935401!GO:0006405;RNA export from nucleus;0.0469325535915578!GO:0042168;heme metabolic process;0.0472721898699935!GO:0032507;maintenance of cellular protein localization;0.0483418033252755!GO:0043624;cellular protein complex disassembly;0.0483764907301244!GO:0016301;kinase activity;0.0489565167883569!GO:0008238;exopeptidase activity;0.0489565167883569!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0490123205179003!GO:0000428;DNA-directed RNA polymerase complex;0.0490123205179003 | |||
|sample_id=11255 | |sample_id=11255 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 105: | ||
|sample_tissue=testis | |sample_tissue=testis | ||
|top_motifs=NKX2-2,8:1.75522376996;TAL1_TCF{3,4,12}:1.7527429205;EN1,2:1.66442914165;TEAD1:1.46322372316;PAX1,9:1.43400274736;HIF1A:1.40937999368;HOX{A5,B5}:1.31026161301;NFATC1..3:1.31025027492;GLI1..3:1.29440201307;RXRA_VDR{dimer}:1.2711117173;HAND1,2:1.22943095572;MYBL2:1.21013430348;NR3C1:1.16417030016;GZF1:1.16069325969;ZNF238:1.10908292333;CDC5L:1.10433039886;HMGA1,2:1.04476870435;TFAP4:1.04277245476;NFE2L1:0.991408172718;UFEwm:0.978826031405;SRF:0.978443771049;NFIX:0.964722768193;HSF1,2:0.951042270736;IKZF1:0.927167599446;ESRRA:0.912390806269;FOXL1:0.887074508214;FOXD3:0.883167950828;TBP:0.857156430079;MAFB:0.855925348161;TP53:0.85369104509;ADNP_IRX_SIX_ZHX:0.8393179136;ZNF384:0.831881545608;POU5F1:0.828143657314;HLF:0.76791932176;EBF1:0.741784504659;PAX6:0.735537380885;PAX4:0.735372690582;TBX4,5:0.730017447358;ALX4:0.721342166554;HES1:0.710511394133;TEF:0.69222127237;KLF4:0.687969054067;LEF1_TCF7_TCF7L1,2:0.671683573401;GFI1B:0.666056513553;ZNF148:0.650118311501;GTF2A1,2:0.63982712955;GCM1,2:0.638880974377;NKX3-1:0.638182337203;STAT2,4,6:0.595476344734;ZNF423:0.593942141667;HMX1:0.583121199245;MTE{core}:0.579176224489;NFE2L2:0.558838966636;EVI1:0.534993726727;GTF2I:0.527830239062;ESR1:0.52592639984;NR6A1:0.519209468048;PPARG:0.514287163855;LHX3,4:0.514250372735;HOX{A4,D4}:0.499761251598;TLX1..3_NFIC{dimer}:0.489152118049;PRDM1:0.487704933193;AR:0.462882177224;PAX3,7:0.454628816298;MYFfamily:0.438703895484;CEBPA,B_DDIT3:0.431088329325;RXR{A,B,G}:0.429169126783;LMO2:0.427404795979;TOPORS:0.40682416617;CDX1,2,4:0.396329267671;ZIC1..3:0.357082030434;ATF6:0.353028667427;SMAD1..7,9:0.322686498799;NR5A1,2:0.309580493905;MYB:0.308160025079;FOX{I1,J2}:0.295972304398;FOXP3:0.282316715213;HNF1A:0.280329731486;FOXA2:0.221514289039;AHR_ARNT_ARNT2:0.209496592715;TFCP2:0.193061596611;AIRE:0.186446979935;TFAP2B:0.155926653133;MAZ:0.149722608689;IRF1,2:0.144132449856;FOXO1,3,4:0.144129882841;MZF1:0.129205614711;IRF7:0.118803203942;ZBTB6:0.0940385224756;CRX:0.0880162737749;NANOG{mouse}:0.0826048654428;TLX2:0.069592123182;FOXM1:0.0609238656233;MEF2{A,B,C,D}:0.0607669724694;SPZ1:0.0605769974815;NKX3-2:0.0406125355694;SOX17:0.0388508766375;FOS_FOS{B,L1}_JUN{B,D}:-0.000828262750821;NKX6-1,2:-0.00715754030745;BACH2:-0.0292017959561;RUNX1..3:-0.0383293549415;POU3F1..4:-0.0462208380523;REST:-0.047541626899;ATF2:-0.0510261700522;FOSL2:-0.0577589361937;XCPE1{core}:-0.0577951394149;PATZ1:-0.0613038267976;VSX1,2:-0.0704607249235;RFX1:-0.0725442305141;NHLH1,2:-0.0784050222005;bHLH_family:-0.0916671319754;DBP:-0.0937275543609;SOX2:-0.103152327299;ARID5B:-0.155136590723;TFDP1:-0.158421463818;XBP1:-0.169218249727;FOX{D1,D2}:-0.170477356672;YY1:-0.177096604379;RORA:-0.178627154758;PRRX1,2:-0.184137935408;PAX5:-0.187962089959;ZEB1:-0.199369538051;NFKB1_REL_RELA:-0.208820923337;HNF4A_NR2F1,2:-0.211754916177;NFE2:-0.221501861729;TGIF1:-0.245496603746;RREB1:-0.290237279903;MED-1{core}:-0.303788682608;PAX2:-0.304319206644;MTF1:-0.311182893935;HIC1:-0.323038239574;PBX1:-0.325616537356;NANOG:-0.337885687578;HOXA9_MEIS1:-0.35511051029;ETS1,2:-0.365873635224;POU1F1:-0.366895751713;SNAI1..3:-0.370300044111;T:-0.371097873297;ZBTB16:-0.374605042261;NFIL3:-0.374997418584;NR1H4:-0.391224830286;HBP1_HMGB_SSRP1_UBTF:-0.400757962229;SOX{8,9,10}:-0.42600269677;E2F1..5:-0.433660463594;EP300:-0.435285600851;GATA4:-0.455818686476;SOX5:-0.477872596952;TFAP2{A,C}:-0.478624360994;MYOD1:-0.499505057965;OCT4_SOX2{dimer}:-0.51969568308;POU6F1:-0.520845197122;SPIB:-0.527085525293;FOXP1:-0.542474010137;STAT5{A,B}:-0.543357254569;ATF5_CREB3:-0.552101283227;FOXN1:-0.56170531799;ZFP161:-0.565786778016;GATA6:-0.594665703611;PAX8:-0.599405861005;STAT1,3:-0.603695522168;EGR1..3:-0.63741277727;ONECUT1,2:-0.637735790923;ELK1,4_GABP{A,B1}:-0.644232476834;CUX2:-0.645444285233;DMAP1_NCOR{1,2}_SMARC:-0.645452283646;GFI1:-0.651444624873;ZNF143:-0.658541445645;NRF1:-0.662470310238;FOX{F1,F2,J1}:-0.677523918876;PITX1..3:-0.702051049789;HOX{A6,A7,B6,B7}:-0.710896275747;SPI1:-0.715188502672;BPTF:-0.728277433183;NKX2-1,4:-0.728828898234;RBPJ:-0.748467211242;ATF4:-0.760151807253;SP1:-0.766242044469;JUN:-0.782932695752;FOXQ1:-0.785400974027;ELF1,2,4:-0.877616623121;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.88331031703;NFY{A,B,C}:-0.961828723185;IKZF2:-1.01060646522;ALX1:-1.02476611904;NKX2-3_NKX2-5:-1.04222344899;CREB1:-1.05539262322;POU2F1..3:-1.10319253783;BREu{core}:-1.13626566182;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.20687203565;SREBF1,2:-1.2618125774;PDX1:-1.34471898742;RFX2..5_RFXANK_RFXAP:-1.41195484496 | |top_motifs=NKX2-2,8:1.75522376996;TAL1_TCF{3,4,12}:1.7527429205;EN1,2:1.66442914165;TEAD1:1.46322372316;PAX1,9:1.43400274736;HIF1A:1.40937999368;HOX{A5,B5}:1.31026161301;NFATC1..3:1.31025027492;GLI1..3:1.29440201307;RXRA_VDR{dimer}:1.2711117173;HAND1,2:1.22943095572;MYBL2:1.21013430348;NR3C1:1.16417030016;GZF1:1.16069325969;ZNF238:1.10908292333;CDC5L:1.10433039886;HMGA1,2:1.04476870435;TFAP4:1.04277245476;NFE2L1:0.991408172718;UFEwm:0.978826031405;SRF:0.978443771049;NFIX:0.964722768193;HSF1,2:0.951042270736;IKZF1:0.927167599446;ESRRA:0.912390806269;FOXL1:0.887074508214;FOXD3:0.883167950828;TBP:0.857156430079;MAFB:0.855925348161;TP53:0.85369104509;ADNP_IRX_SIX_ZHX:0.8393179136;ZNF384:0.831881545608;POU5F1:0.828143657314;HLF:0.76791932176;EBF1:0.741784504659;PAX6:0.735537380885;PAX4:0.735372690582;TBX4,5:0.730017447358;ALX4:0.721342166554;HES1:0.710511394133;TEF:0.69222127237;KLF4:0.687969054067;LEF1_TCF7_TCF7L1,2:0.671683573401;GFI1B:0.666056513553;ZNF148:0.650118311501;GTF2A1,2:0.63982712955;GCM1,2:0.638880974377;NKX3-1:0.638182337203;STAT2,4,6:0.595476344734;ZNF423:0.593942141667;HMX1:0.583121199245;MTE{core}:0.579176224489;NFE2L2:0.558838966636;EVI1:0.534993726727;GTF2I:0.527830239062;ESR1:0.52592639984;NR6A1:0.519209468048;PPARG:0.514287163855;LHX3,4:0.514250372735;HOX{A4,D4}:0.499761251598;TLX1..3_NFIC{dimer}:0.489152118049;PRDM1:0.487704933193;AR:0.462882177224;PAX3,7:0.454628816298;MYFfamily:0.438703895484;CEBPA,B_DDIT3:0.431088329325;RXR{A,B,G}:0.429169126783;LMO2:0.427404795979;TOPORS:0.40682416617;CDX1,2,4:0.396329267671;ZIC1..3:0.357082030434;ATF6:0.353028667427;SMAD1..7,9:0.322686498799;NR5A1,2:0.309580493905;MYB:0.308160025079;FOX{I1,J2}:0.295972304398;FOXP3:0.282316715213;HNF1A:0.280329731486;FOXA2:0.221514289039;AHR_ARNT_ARNT2:0.209496592715;TFCP2:0.193061596611;AIRE:0.186446979935;TFAP2B:0.155926653133;MAZ:0.149722608689;IRF1,2:0.144132449856;FOXO1,3,4:0.144129882841;MZF1:0.129205614711;IRF7:0.118803203942;ZBTB6:0.0940385224756;CRX:0.0880162737749;NANOG{mouse}:0.0826048654428;TLX2:0.069592123182;FOXM1:0.0609238656233;MEF2{A,B,C,D}:0.0607669724694;SPZ1:0.0605769974815;NKX3-2:0.0406125355694;SOX17:0.0388508766375;FOS_FOS{B,L1}_JUN{B,D}:-0.000828262750821;NKX6-1,2:-0.00715754030745;BACH2:-0.0292017959561;RUNX1..3:-0.0383293549415;POU3F1..4:-0.0462208380523;REST:-0.047541626899;ATF2:-0.0510261700522;FOSL2:-0.0577589361937;XCPE1{core}:-0.0577951394149;PATZ1:-0.0613038267976;VSX1,2:-0.0704607249235;RFX1:-0.0725442305141;NHLH1,2:-0.0784050222005;bHLH_family:-0.0916671319754;DBP:-0.0937275543609;SOX2:-0.103152327299;ARID5B:-0.155136590723;TFDP1:-0.158421463818;XBP1:-0.169218249727;FOX{D1,D2}:-0.170477356672;YY1:-0.177096604379;RORA:-0.178627154758;PRRX1,2:-0.184137935408;PAX5:-0.187962089959;ZEB1:-0.199369538051;NFKB1_REL_RELA:-0.208820923337;HNF4A_NR2F1,2:-0.211754916177;NFE2:-0.221501861729;TGIF1:-0.245496603746;RREB1:-0.290237279903;MED-1{core}:-0.303788682608;PAX2:-0.304319206644;MTF1:-0.311182893935;HIC1:-0.323038239574;PBX1:-0.325616537356;NANOG:-0.337885687578;HOXA9_MEIS1:-0.35511051029;ETS1,2:-0.365873635224;POU1F1:-0.366895751713;SNAI1..3:-0.370300044111;T:-0.371097873297;ZBTB16:-0.374605042261;NFIL3:-0.374997418584;NR1H4:-0.391224830286;HBP1_HMGB_SSRP1_UBTF:-0.400757962229;SOX{8,9,10}:-0.42600269677;E2F1..5:-0.433660463594;EP300:-0.435285600851;GATA4:-0.455818686476;SOX5:-0.477872596952;TFAP2{A,C}:-0.478624360994;MYOD1:-0.499505057965;OCT4_SOX2{dimer}:-0.51969568308;POU6F1:-0.520845197122;SPIB:-0.527085525293;FOXP1:-0.542474010137;STAT5{A,B}:-0.543357254569;ATF5_CREB3:-0.552101283227;FOXN1:-0.56170531799;ZFP161:-0.565786778016;GATA6:-0.594665703611;PAX8:-0.599405861005;STAT1,3:-0.603695522168;EGR1..3:-0.63741277727;ONECUT1,2:-0.637735790923;ELK1,4_GABP{A,B1}:-0.644232476834;CUX2:-0.645444285233;DMAP1_NCOR{1,2}_SMARC:-0.645452283646;GFI1:-0.651444624873;ZNF143:-0.658541445645;NRF1:-0.662470310238;FOX{F1,F2,J1}:-0.677523918876;PITX1..3:-0.702051049789;HOX{A6,A7,B6,B7}:-0.710896275747;SPI1:-0.715188502672;BPTF:-0.728277433183;NKX2-1,4:-0.728828898234;RBPJ:-0.748467211242;ATF4:-0.760151807253;SP1:-0.766242044469;JUN:-0.782932695752;FOXQ1:-0.785400974027;ELF1,2,4:-0.877616623121;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.88331031703;NFY{A,B,C}:-0.961828723185;IKZF2:-1.01060646522;ALX1:-1.02476611904;NKX2-3_NKX2-5:-1.04222344899;CREB1:-1.05539262322;POU2F1..3:-1.10319253783;BREu{core}:-1.13626566182;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.20687203565;SREBF1,2:-1.2618125774;PDX1:-1.34471898742;RFX2..5_RFXANK_RFXAP:-1.41195484496 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11255-116F4;search_select_hide=table117:FF:11255-116F4 | |||
}} | }} | ||
Latest revision as of 16:28, 3 June 2020
| Name: | Sertoli Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10851 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10851
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10851
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.124 |
| 10 | 10 | 0.638 |
| 100 | 100 | 0.696 |
| 101 | 101 | 0.735 |
| 102 | 102 | 0.126 |
| 103 | 103 | 0.082 |
| 104 | 104 | 0.791 |
| 105 | 105 | 0.806 |
| 106 | 106 | 0.0231 |
| 107 | 107 | 0.0267 |
| 108 | 108 | 0.373 |
| 109 | 109 | 0.157 |
| 11 | 11 | 0.285 |
| 110 | 110 | 0.246 |
| 111 | 111 | 0.973 |
| 112 | 112 | 0.468 |
| 113 | 113 | 0.194 |
| 114 | 114 | 0.0927 |
| 115 | 115 | 0.368 |
| 116 | 116 | 0.0719 |
| 117 | 117 | 0.739 |
| 118 | 118 | 0.972 |
| 119 | 119 | 0.263 |
| 12 | 12 | 0.362 |
| 120 | 120 | 0.901 |
| 121 | 121 | 0.817 |
| 122 | 122 | 0.504 |
| 123 | 123 | 0.158 |
| 124 | 124 | 0.532 |
| 125 | 125 | 0.768 |
| 126 | 126 | 0.983 |
| 127 | 127 | 0.895 |
| 128 | 128 | 0.0476 |
| 129 | 129 | 0.385 |
| 13 | 13 | 0.677 |
| 130 | 130 | 0.384 |
| 131 | 131 | 0.0723 |
| 132 | 132 | 0.716 |
| 133 | 133 | 0.789 |
| 134 | 134 | 0.12 |
| 135 | 135 | 0.146 |
| 136 | 136 | 0.508 |
| 137 | 137 | 0.653 |
| 138 | 138 | 0.581 |
| 139 | 139 | 0.566 |
| 14 | 14 | 0.866 |
| 140 | 140 | 0.442 |
| 141 | 141 | 0.539 |
| 142 | 142 | 0.584 |
| 143 | 143 | 0.048 |
| 144 | 144 | 0.705 |
| 145 | 145 | 0.362 |
| 146 | 146 | 0.584 |
| 147 | 147 | 0.183 |
| 148 | 148 | 0.445 |
| 149 | 149 | 1.6355e-4 |
| 15 | 15 | 0.175 |
| 150 | 150 | 0.383 |
| 151 | 151 | 0.415 |
| 152 | 152 | 0.122 |
| 153 | 153 | 0.158 |
| 154 | 154 | 0.86 |
| 155 | 155 | 0.216 |
| 156 | 156 | 0.46 |
| 157 | 157 | 0.888 |
| 158 | 158 | 0.0771 |
| 159 | 159 | 0.411 |
| 16 | 16 | 0.026 |
| 160 | 160 | 0.141 |
| 161 | 161 | 0.245 |
| 162 | 162 | 0.83 |
| 163 | 163 | 0.514 |
| 164 | 164 | 0.212 |
| 165 | 165 | 0.992 |
| 166 | 166 | 0.0733 |
| 167 | 167 | 0.566 |
| 168 | 168 | 0.859 |
| 169 | 169 | 0.0339 |
| 17 | 17 | 0.22 |
| 18 | 18 | 0.0435 |
| 19 | 19 | 0.0356 |
| 2 | 2 | 0.144 |
| 20 | 20 | 0.327 |
| 21 | 21 | 0.148 |
| 22 | 22 | 0.191 |
| 23 | 23 | 0.0204 |
| 24 | 24 | 0.673 |
| 25 | 25 | 0.798 |
| 26 | 26 | 0.0933 |
| 27 | 27 | 0.158 |
| 28 | 28 | 0.436 |
| 29 | 29 | 0.723 |
| 3 | 3 | 0.251 |
| 30 | 30 | 0.402 |
| 31 | 31 | 0.521 |
| 32 | 32 | 1.0594e-11 |
| 33 | 33 | 0.435 |
| 34 | 34 | 0.604 |
| 35 | 35 | 0.214 |
| 36 | 36 | 0.401 |
| 37 | 37 | 0.211 |
| 38 | 38 | 0.83 |
| 39 | 39 | 0.213 |
| 4 | 4 | 0.949 |
| 40 | 40 | 0.749 |
| 41 | 41 | 0.407 |
| 42 | 42 | 0.513 |
| 43 | 43 | 0.302 |
| 44 | 44 | 0.681 |
| 45 | 45 | 0.433 |
| 46 | 46 | 0.0637 |
| 47 | 47 | 0.443 |
| 48 | 48 | 0.471 |
| 49 | 49 | 0.297 |
| 5 | 5 | 0.307 |
| 50 | 50 | 0.534 |
| 51 | 51 | 0.916 |
| 52 | 52 | 0.132 |
| 53 | 53 | 0.871 |
| 54 | 54 | 0.532 |
| 55 | 55 | 0.0934 |
| 56 | 56 | 0.782 |
| 57 | 57 | 0.269 |
| 58 | 58 | 0.789 |
| 59 | 59 | 0.0752 |
| 6 | 6 | 0.643 |
| 60 | 60 | 0.112 |
| 61 | 61 | 0.521 |
| 62 | 62 | 0.192 |
| 63 | 63 | 0.179 |
| 64 | 64 | 0.557 |
| 65 | 65 | 0.227 |
| 66 | 66 | 0.99 |
| 67 | 67 | 0.123 |
| 68 | 68 | 0.974 |
| 69 | 69 | 0.445 |
| 7 | 7 | 0.921 |
| 70 | 70 | 0.104 |
| 71 | 71 | 0.0742 |
| 72 | 72 | 0.714 |
| 73 | 73 | 0.251 |
| 74 | 74 | 0.00924 |
| 75 | 75 | 0.325 |
| 76 | 76 | 0.755 |
| 77 | 77 | 0.00838 |
| 78 | 78 | 0.532 |
| 79 | 79 | 0.0112 |
| 8 | 8 | 0.0467 |
| 80 | 80 | 0.754 |
| 81 | 81 | 0.27 |
| 82 | 82 | 0.24 |
| 83 | 83 | 0.4 |
| 84 | 84 | 0.975 |
| 85 | 85 | 0.0355 |
| 86 | 86 | 0.519 |
| 87 | 87 | 0.797 |
| 88 | 88 | 0.456 |
| 89 | 89 | 0.046 |
| 9 | 9 | 0.387 |
| 90 | 90 | 0.171 |
| 91 | 91 | 0.53 |
| 92 | 92 | 0.124 |
| 93 | 93 | 0.516 |
| 94 | 94 | 0.152 |
| 95 | 95 | 0.452 |
| 96 | 96 | 0.318 |
| 97 | 97 | 0.171 |
| 98 | 98 | 0.888 |
| 99 | 99 | 0.00427 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10851
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000161 human sertoli cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000511 (androgen binding protein secreting cell)
0000630 (supportive cell)
0002625 (seminiferous tubule epithelial cell)
0000154 (protein secreting cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
0000216 (Sertoli cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000473 (testis)
0001136 (mesothelium)
0000483 (epithelium)
0000991 (gonad)
0001343 (seminiferous tubule of testis)
0000479 (tissue)
0000058 (duct)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0003133 (reproductive organ)
0005904 (duct of male reproductive system)
0000487 (simple squamous epithelium)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0004910 (epithelium of male gonad)
0004909 (epithelium of gonad)
0004813 (seminiferous tubule epithelium)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000161 (human sertoli cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
