FF:11597-120H4: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (25 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005334 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005334 | ||
|accession_numbers=CAGE;DRX008428;DRR009300;DRZ000725;DRZ002110;DRZ012075;DRZ013460 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037018;DRR041384;DRZ007026 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:1000449,CL:1000507,CL:1000494 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor2.CNhs12088.11597-120H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor2.CNhs12088.11597-120H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor2.CNhs12088.11597-120H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor2.CNhs12088.11597-120H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor2.CNhs12088.11597-120H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11597-120H4 | |id=FF:11597-120H4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000151 | ||
|is_obsolete= | |||
|library_id=CNhs12088 | |||
|library_id_phase_based=2:CNhs12088 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11597 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GATCAG.11597 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11597 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GATCAG.11597 | |||
|name=Renal Epithelial Cells, donor2 | |name=Renal Epithelial Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12088,LSID839,release011,COMPLETED | |profile_hcage=CNhs12088,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.113818696027956,0.0143936643464257,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.293222931953413,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.145899716966013,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0184617907138642,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0106215913485594,0,0,0,0,0,0,0.033423340976044,0,0,0,0.0866660017926367,-0.0156069885851336,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.00369347814536114,0.0932629183162725,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,0.144001952935906,0,-0.474086218752008,-0.143515142523472,0,0,-0.427279086909571,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,-0.120879483793741,0.308460659898053,0.169569240118664,0.260430400533778,-0.055712496781182,0,0,0,-0.0828089308636405,-0.424784463546153,0,0,0.403405109586186,0.014240795550076,0,0,-0.391044581551635,0,-0.0659625322044064,-0.0214521931893236,0,-0.0276379573696,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,0,0,0,0,0.160767538643677,0,0,0.730214409630296,0.489982546937639,-0.0340694087931624,0.488158975815154,0,-0.302389727009913,-0.10072694396692,0.198381072156258,0.17229661393942,0.583717458117488,0.201199108671623,0,0.209490329215289,0.317227936472852,0,-0.00528689679060279,0.0719154741307684,0.35961376309585,0.333507689391973,0,0,0,-0.76514378723743,0,0,0.241004593011853,0.0567143998505555,0.21070520999379,0.0811059539642371,0.218385266168086,0.32710747197561,-0.0395325284566706,-0.0662556246751245,0.038193901773485,-0.124775099980332,0.000359707073813276,0,0,0.0488337238909796,0.203909259563181,0.219583378234641,0,-0.483977461810981,-0.0683442610773682,0,0.375346269850272,0.325557306718154,0,0,0.0148172189753232,0,0,0,0,0,0.391548376027105,-0.148311314808696,0.36073888829119,0,0.0990575032737735,-0.0165928387350266,0.3932150170934,0,-0.112825365909499,0,0,-0.00812325073594555,0,0.101267973933994,-0.696661868948113,-0.164990696339003,-0.0312139771702672,-0.0584468268118252,-0.730471933775731,-0.708380651750326,0.0710906223777785,-0.788939864790226,0,-0.0881268324752877,0,-0.88354475051838,-0.288317303400054,0.0338271757574538,0.0788269744381089,0,-0.343539384386557,0,-1.00562876449217,0,0.352402586158973,-0.54043375147324,0.154305075266049,-0.348778323387258,0,0.145231688578447,-0.788130937773974,0,0.111228858385298,-0.0249156746751844,0,0.240813744886831,0.033423340976044,-0.211650427864589,0.0566009574315403,0,-0.790080158389657,0,0,-0.340141642122854,-0.235476037764389,0,0.0621521270918665,-0.218022085991926,-0.0106215913485594,-0.115971073434934,0,0,0.344121028677778,0,0,0.754303293707774,0,0.299658859724395,-0.253326341486756,-0.0252361522882968,0.309081966252405,0,0,-0.177527765965176,0,0.214813174259255,0,0,0.141299531622646,0.274552715231338,0,0,0,0,0,0,0,0,0,0,0,-0.215087852289628,0.0363474980050223,0,0.438689743598925,0,0,0,0.593594449846735,0,0,0,0,-0.756921287406356,-0.0177406714368043,0.608101891812206,0,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0.195590414110735,0,-0.057730457053664,-0.157524138712637,0,0,0,-0.27695440160179,0,0,0,0,-0.682824786449966,0,0,-0.0383357235396448,0,0.264742705473711,-0.0815818795468414,0,-0.14902559280036,0.369671274503299,1.11206682521811,0,0,0.129833696431583,0,0,-0.644763493411777,-0.0823702229656663,0,-0.0209247759461169,0,0,0,0,0,0,0.176866315821715,0,0,0,0,0,0,0,0,0,0,0,-0.40776656356589,-0.0922240566585104,-0.0640596705171081,0,0,0,0,0,0,-0.0241060230789031,-0.201808788507994,0,0,0,0,0,0,0,0,-0.0802451114417718,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.0287873286928513,0,0,0.113818696027956,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.30154184574172,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.277296454512493,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0405740578488376,0,-0.141787101275701,0,0,0,-0.0370379385223066,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.293222931953413,0,0,-0.0920328098005262,0,0,0,0,0,0,0.273173227198339,0.176500692018366,0.0622166555444421,0,0,0,0.14120484162828,0,0,0.114306491510346,0,-0.0667773874189013,0,0,0,0,0,0,0.39118082822147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0.731119307488627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.405428866950395,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342958752982416,0,0.306804195991443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180615264972914,0,0,0,0,0.343543717560551,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.021231253799587,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0.593594449846735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0932629183162725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.354724076107398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215013132663716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157236414286507,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365559653744313,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246859242401781,0.195590414110735,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0.296797224923368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00658386419129808,0,0,-0.0422874684771159,0,0.162699484070269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111108732898504,0,0.151430476594571,-0.397074688522015,0,0,0.015936062886076,0,0,0,0,0,-0.174992895090299,0.183479658701452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,-0.269475635594569,0.39118082822147,0.0123445738710463,0,0,-0.0781053106522872,0,0,0,-0.0959594073735869 | |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC4125 | |rna_catalog_number=SC4125 | ||
| Line 56: | Line 81: | ||
|rna_tube_id=120H4 | |rna_tube_id=120H4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.GATCAG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:0153 | |sample_cell_catalog=lot:0153 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.50106882195712e-237!GO:0005737;cytoplasm;3.59857728836307e-179!GO:0043226;organelle;3.95378630435278e-140!GO:0043229;intracellular organelle;7.60817262123532e-140!GO:0043231;intracellular membrane-bound organelle;3.32356500323961e-131!GO:0043227;membrane-bound organelle;5.46745255158269e-131!GO:0044444;cytoplasmic part;2.26044094521014e-130!GO:0044422;organelle part;9.49913447287166e-128!GO:0044446;intracellular organelle part;1.29896851546287e-126!GO:0032991;macromolecular complex;6.7701049844243e-80!GO:0005515;protein binding;1.03413384803436e-75!GO:0005739;mitochondrion;1.87578840682505e-71!GO:0030529;ribonucleoprotein complex;2.16687808314102e-66!GO:0044237;cellular metabolic process;1.50964968357665e-59!GO:0044238;primary metabolic process;4.63595799001569e-57!GO:0043233;organelle lumen;2.56830625777972e-51!GO:0031974;membrane-enclosed lumen;2.56830625777972e-51!GO:0005840;ribosome;5.42763572720657e-51!GO:0031090;organelle membrane;7.910283014412e-50!GO:0043170;macromolecule metabolic process;3.85159278411627e-48!GO:0019538;protein metabolic process;1.11582735933585e-47!GO:0044428;nuclear part;5.41613622106445e-47!GO:0044429;mitochondrial part;1.78764173155267e-46!GO:0016043;cellular component organization and biogenesis;2.44693347672145e-46!GO:0003735;structural constituent of ribosome;7.34960316087864e-46!GO:0003723;RNA binding;1.06050281007429e-45!GO:0009058;biosynthetic process;2.61100063384603e-45!GO:0006412;translation;1.0865602556204e-44!GO:0044260;cellular macromolecule metabolic process;2.33636657680755e-43!GO:0044249;cellular biosynthetic process;4.39130714809752e-43!GO:0044267;cellular protein metabolic process;6.0400493486271e-43!GO:0043234;protein complex;2.49811107473637e-42!GO:0031967;organelle envelope;8.5511456272714e-42!GO:0031975;envelope;1.97077239881438e-41!GO:0033279;ribosomal subunit;1.82780651638709e-39!GO:0009059;macromolecule biosynthetic process;3.36241285251386e-37!GO:0005634;nucleus;3.26701892786247e-35!GO:0005829;cytosol;9.64111989454744e-34!GO:0043228;non-membrane-bound organelle;1.477485970545e-33!GO:0043232;intracellular non-membrane-bound organelle;1.477485970545e-33!GO:0015031;protein transport;2.84886668102668e-33!GO:0033036;macromolecule localization;4.96344947220929e-33!GO:0005740;mitochondrial envelope;8.48101899431254e-33!GO:0006996;organelle organization and biogenesis;9.19543556115191e-32!GO:0008104;protein localization;2.52806568944735e-31!GO:0046907;intracellular transport;5.18407839698517e-31!GO:0031966;mitochondrial membrane;4.06477484218641e-30!GO:0045184;establishment of protein localization;4.48996934758072e-30!GO:0019866;organelle inner membrane;5.08370023572249e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.13370586841785e-29!GO:0005743;mitochondrial inner membrane;1.70411657433399e-28!GO:0006396;RNA processing;1.64303749252235e-27!GO:0031981;nuclear lumen;9.64746352115931e-27!GO:0065003;macromolecular complex assembly;2.34945453573538e-26!GO:0006886;intracellular protein transport;1.68647262098578e-24!GO:0022607;cellular component assembly;1.73420799240155e-24!GO:0044445;cytosolic part;5.34922499790444e-23!GO:0016071;mRNA metabolic process;1.9913817367685e-22!GO:0006259;DNA metabolic process;1.59586614544345e-21!GO:0007049;cell cycle;1.81262487162706e-20!GO:0015934;large ribosomal subunit;1.93533013180775e-20!GO:0051641;cellular localization;2.63570660042133e-20!GO:0051649;establishment of cellular localization;3.94322677346206e-20!GO:0015935;small ribosomal subunit;5.02860753582572e-20!GO:0008380;RNA splicing;5.49277552951317e-20!GO:0006119;oxidative phosphorylation;1.42788055656139e-19!GO:0043283;biopolymer metabolic process;2.11164670656565e-19!GO:0044455;mitochondrial membrane part;2.97568013836932e-19!GO:0006397;mRNA processing;7.67374633295812e-19!GO:0012505;endomembrane system;1.57301058108261e-18!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.64224755209459e-18!GO:0031980;mitochondrial lumen;2.60005762816927e-17!GO:0005759;mitochondrial matrix;2.60005762816927e-17!GO:0022402;cell cycle process;1.89746388916053e-16!GO:0048770;pigment granule;2.59734554538035e-16!GO:0042470;melanosome;2.59734554538035e-16!GO:0005783;endoplasmic reticulum;3.05457661217484e-16!GO:0000166;nucleotide binding;3.96291202273263e-16!GO:0005654;nucleoplasm;5.55314093377708e-16!GO:0000278;mitotic cell cycle;6.23198325943754e-16!GO:0005746;mitochondrial respiratory chain;6.51942326796161e-16!GO:0016462;pyrophosphatase activity;6.52543541602854e-16!GO:0051186;cofactor metabolic process;7.36566399143881e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.01269045790366e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.05490439966435e-15!GO:0017111;nucleoside-triphosphatase activity;1.98049061293423e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.05752703926249e-15!GO:0005681;spliceosome;3.77450066421969e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.33830558734562e-15!GO:0006457;protein folding;7.38184145654296e-15!GO:0008134;transcription factor binding;9.28385610781658e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.05678749497211e-14!GO:0003954;NADH dehydrogenase activity;1.05678749497211e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.05678749497211e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.18722804411248e-14!GO:0044432;endoplasmic reticulum part;2.19351162939504e-14!GO:0010467;gene expression;2.36947293465258e-14!GO:0005794;Golgi apparatus;4.38108205281398e-14!GO:0012501;programmed cell death;4.58752791341403e-14!GO:0006915;apoptosis;8.00631327208976e-14!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.43710746242698e-13!GO:0044265;cellular macromolecule catabolic process;3.0199989417958e-13!GO:0044451;nucleoplasm part;3.02805930717767e-13!GO:0044248;cellular catabolic process;3.60953582207287e-13!GO:0009057;macromolecule catabolic process;4.61108034619057e-13!GO:0006605;protein targeting;4.75855955943995e-13!GO:0043412;biopolymer modification;6.1380415614176e-13!GO:0005761;mitochondrial ribosome;7.13397027003215e-13!GO:0000313;organellar ribosome;7.13397027003215e-13!GO:0030964;NADH dehydrogenase complex (quinone);7.42965171071669e-13!GO:0045271;respiratory chain complex I;7.42965171071669e-13!GO:0005747;mitochondrial respiratory chain complex I;7.42965171071669e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.69400947297223e-13!GO:0042773;ATP synthesis coupled electron transport;8.69400947297223e-13!GO:0008219;cell death;1.95908213870486e-12!GO:0016265;death;1.95908213870486e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.45627781619502e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.59181570639743e-12!GO:0016874;ligase activity;3.28332482786114e-12!GO:0043285;biopolymer catabolic process;5.18294508195843e-12!GO:0006732;coenzyme metabolic process;5.56025026544822e-12!GO:0032553;ribonucleotide binding;6.37292212048066e-12!GO:0032555;purine ribonucleotide binding;6.37292212048066e-12!GO:0022403;cell cycle phase;7.12837183717128e-12!GO:0006464;protein modification process;8.09010278745804e-12!GO:0000502;proteasome complex (sensu Eukaryota);9.39722024513072e-12!GO:0017076;purine nucleotide binding;1.37777872335206e-11!GO:0051082;unfolded protein binding;2.22813743814383e-11!GO:0022618;protein-RNA complex assembly;2.22942435478047e-11!GO:0009055;electron carrier activity;3.96472911551571e-11!GO:0044427;chromosomal part;5.45888553999612e-11!GO:0005730;nucleolus;5.96876014709103e-11!GO:0006512;ubiquitin cycle;6.45234773600766e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.50081614146464e-11!GO:0051276;chromosome organization and biogenesis;7.7693901300421e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;8.27185926469882e-11!GO:0005789;endoplasmic reticulum membrane;1.09132221446797e-10!GO:0043067;regulation of programmed cell death;1.11265517161599e-10!GO:0000785;chromatin;1.22435602672552e-10!GO:0007067;mitosis;1.37471451042659e-10!GO:0042981;regulation of apoptosis;1.42791651367529e-10!GO:0000087;M phase of mitotic cell cycle;1.61831493140529e-10!GO:0005694;chromosome;2.53548821195262e-10!GO:0005635;nuclear envelope;3.78577775652297e-10!GO:0006323;DNA packaging;4.72420116907369e-10!GO:0051726;regulation of cell cycle;7.24158265844078e-10!GO:0003712;transcription cofactor activity;9.92264488597345e-10!GO:0000074;regulation of progression through cell cycle;1.02852125455689e-09!GO:0030163;protein catabolic process;1.06404970990511e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.15880574385372e-09!GO:0000375;RNA splicing, via transesterification reactions;1.15880574385372e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.15880574385372e-09!GO:0005524;ATP binding;1.23092825641376e-09!GO:0007005;mitochondrion organization and biogenesis;1.4408231802816e-09!GO:0048523;negative regulation of cellular process;1.62927523382333e-09!GO:0032559;adenyl ribonucleotide binding;1.66108527019836e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;1.84042121141804e-09!GO:0043687;post-translational protein modification;2.04628741233073e-09!GO:0019941;modification-dependent protein catabolic process;2.52133237013548e-09!GO:0043632;modification-dependent macromolecule catabolic process;2.52133237013548e-09!GO:0044257;cellular protein catabolic process;2.68300446094229e-09!GO:0031965;nuclear membrane;3.39311643126074e-09!GO:0006333;chromatin assembly or disassembly;3.53056121984872e-09!GO:0016192;vesicle-mediated transport;3.73738109940192e-09!GO:0006511;ubiquitin-dependent protein catabolic process;4.14267012718179e-09!GO:0030554;adenyl nucleotide binding;4.39417700094089e-09!GO:0051188;cofactor biosynthetic process;5.63162295347516e-09!GO:0006913;nucleocytoplasmic transport;8.85964033525443e-09!GO:0000279;M phase;8.85964033525443e-09!GO:0008135;translation factor activity, nucleic acid binding;1.06725206149329e-08!GO:0006163;purine nucleotide metabolic process;1.47732602816247e-08!GO:0009056;catabolic process;1.54053544715818e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.57215667499696e-08!GO:0006461;protein complex assembly;1.58314902238211e-08!GO:0051169;nuclear transport;1.84233258914762e-08!GO:0006334;nucleosome assembly;2.28135336142675e-08!GO:0009259;ribonucleotide metabolic process;2.40098200774096e-08!GO:0044453;nuclear membrane part;2.40415193387438e-08!GO:0048519;negative regulation of biological process;2.40415193387438e-08!GO:0031497;chromatin assembly;2.52300813553631e-08!GO:0043069;negative regulation of programmed cell death;2.5406396320652e-08!GO:0048193;Golgi vesicle transport;2.67597794786326e-08!GO:0009150;purine ribonucleotide metabolic process;3.50260955624099e-08!GO:0065004;protein-DNA complex assembly;4.40200133396875e-08!GO:0017038;protein import;4.65154647813702e-08!GO:0016491;oxidoreductase activity;5.46401835486637e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.65243159423569e-08!GO:0005793;ER-Golgi intermediate compartment;5.9802676521544e-08!GO:0006974;response to DNA damage stimulus;6.78149400851699e-08!GO:0043066;negative regulation of apoptosis;6.89729129175531e-08!GO:0006916;anti-apoptosis;8.12466424220223e-08!GO:0042623;ATPase activity, coupled;8.21514412032755e-08!GO:0016887;ATPase activity;9.02592726465841e-08!GO:0006164;purine nucleotide biosynthetic process;9.22446875352325e-08!GO:0016740;transferase activity;1.18062986324894e-07!GO:0051301;cell division;1.22967079351043e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.2713690943267e-07!GO:0015630;microtubule cytoskeleton;1.36619563927167e-07!GO:0009260;ribonucleotide biosynthetic process;2.14476401637956e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.23405322514073e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.53915118425694e-07!GO:0016787;hydrolase activity;2.94913480570684e-07!GO:0005768;endosome;3.0422077442419e-07!GO:0065002;intracellular protein transport across a membrane;3.57339324854153e-07!GO:0003743;translation initiation factor activity;3.71745100508883e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.90701669526267e-07!GO:0009141;nucleoside triphosphate metabolic process;4.16404172849182e-07!GO:0006260;DNA replication;5.19457813903973e-07!GO:0006413;translational initiation;6.5365480874899e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.66008929567421e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.66008929567421e-07!GO:0006446;regulation of translational initiation;1.01018432715922e-06!GO:0042254;ribosome biogenesis and assembly;1.02159246419077e-06!GO:0005643;nuclear pore;1.06080459305642e-06!GO:0008565;protein transporter activity;1.1736039378287e-06!GO:0009719;response to endogenous stimulus;1.40704851461289e-06!GO:0015986;ATP synthesis coupled proton transport;1.53224176686519e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.53224176686519e-06!GO:0006366;transcription from RNA polymerase II promoter;1.71304854810731e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.71304854810731e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.83304574262352e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.83304574262352e-06!GO:0006281;DNA repair;1.84441113618384e-06!GO:0044431;Golgi apparatus part;1.88222089611037e-06!GO:0019829;cation-transporting ATPase activity;1.88222089611037e-06!GO:0009108;coenzyme biosynthetic process;2.0957379520747e-06!GO:0006399;tRNA metabolic process;2.20714662326729e-06!GO:0009117;nucleotide metabolic process;2.23498852939942e-06!GO:0008639;small protein conjugating enzyme activity;2.24392422660942e-06!GO:0016604;nuclear body;2.35679735773221e-06!GO:0046034;ATP metabolic process;2.45800838312066e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.75115233815713e-06!GO:0009060;aerobic respiration;2.8850932372991e-06!GO:0003924;GTPase activity;3.19078132417071e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.56247011802627e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.56247011802627e-06!GO:0006793;phosphorus metabolic process;3.82740103577369e-06!GO:0006796;phosphate metabolic process;3.82740103577369e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.28972372483697e-06!GO:0003714;transcription corepressor activity;4.30312403567698e-06!GO:0004842;ubiquitin-protein ligase activity;4.33036058753896e-06!GO:0051329;interphase of mitotic cell cycle;4.44398329994002e-06!GO:0016563;transcription activator activity;4.54850171386543e-06!GO:0031252;leading edge;4.59293627533729e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.64197195163133e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.64197195163133e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.64197195163133e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.1347758661912e-06!GO:0046930;pore complex;6.65692389587393e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.11538736957738e-06!GO:0019787;small conjugating protein ligase activity;7.76145661336114e-06!GO:0000786;nucleosome;8.77290277166347e-06!GO:0048468;cell development;9.83989131731822e-06!GO:0048522;positive regulation of cellular process;1.00569363803322e-05!GO:0051246;regulation of protein metabolic process;1.00569363803322e-05!GO:0007010;cytoskeleton organization and biogenesis;1.00580770577866e-05!GO:0006754;ATP biosynthetic process;1.00580770577866e-05!GO:0006753;nucleoside phosphate metabolic process;1.00580770577866e-05!GO:0045333;cellular respiration;1.04386849563807e-05!GO:0051325;interphase;1.18164710137879e-05!GO:0043038;amino acid activation;1.18564432368073e-05!GO:0006418;tRNA aminoacylation for protein translation;1.18564432368073e-05!GO:0043039;tRNA aminoacylation;1.18564432368073e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.24608923168612e-05!GO:0045259;proton-transporting ATP synthase complex;1.26615151621741e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.54503284875263e-05!GO:0005773;vacuole;1.61717108225212e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.84243706838685e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.0724870782283e-05!GO:0048475;coated membrane;2.09002085224161e-05!GO:0030117;membrane coat;2.09002085224161e-05!GO:0043623;cellular protein complex assembly;2.1333325168317e-05!GO:0006091;generation of precursor metabolites and energy;2.25767387312562e-05!GO:0005762;mitochondrial large ribosomal subunit;2.48151724583795e-05!GO:0000315;organellar large ribosomal subunit;2.48151724583795e-05!GO:0042802;identical protein binding;2.6988286127055e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.92837439163739e-05!GO:0031988;membrane-bound vesicle;2.96015986666193e-05!GO:0006752;group transfer coenzyme metabolic process;3.75148625200621e-05!GO:0005788;endoplasmic reticulum lumen;3.81380754194398e-05!GO:0030120;vesicle coat;4.11156279991896e-05!GO:0030662;coated vesicle membrane;4.11156279991896e-05!GO:0016881;acid-amino acid ligase activity;4.41692720939285e-05!GO:0016568;chromatin modification;4.67840043794585e-05!GO:0051170;nuclear import;4.8180020745137e-05!GO:0016310;phosphorylation;5.32046609190988e-05!GO:0019899;enzyme binding;5.5694975536058e-05!GO:0006606;protein import into nucleus;5.66566355542185e-05!GO:0044440;endosomal part;6.02803567496302e-05!GO:0010008;endosome membrane;6.02803567496302e-05!GO:0004298;threonine endopeptidase activity;6.65045303374085e-05!GO:0045454;cell redox homeostasis;7.04585836705971e-05!GO:0016853;isomerase activity;7.19696740024878e-05!GO:0000139;Golgi membrane;7.58464188006883e-05!GO:0005905;coated pit;7.7965730155575e-05!GO:0032446;protein modification by small protein conjugation;8.33354020450147e-05!GO:0044262;cellular carbohydrate metabolic process;8.96838266658209e-05!GO:0031410;cytoplasmic vesicle;9.13145383801558e-05!GO:0031982;vesicle;9.3831596463235e-05!GO:0006099;tricarboxylic acid cycle;9.47921649635493e-05!GO:0046356;acetyl-CoA catabolic process;9.47921649635493e-05!GO:0045786;negative regulation of progression through cell cycle;9.59166111096225e-05!GO:0005770;late endosome;9.63812710485742e-05!GO:0019843;rRNA binding;0.000102532081835961!GO:0008610;lipid biosynthetic process;0.000104359890970962!GO:0006084;acetyl-CoA metabolic process;0.000111454329265587!GO:0065009;regulation of a molecular function;0.000122392369201923!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000125316625500161!GO:0030029;actin filament-based process;0.000141694277558512!GO:0008654;phospholipid biosynthetic process;0.000151683427275958!GO:0005525;GTP binding;0.000170969208904257!GO:0016567;protein ubiquitination;0.000172489432537867!GO:0006364;rRNA processing;0.000182493520538505!GO:0000323;lytic vacuole;0.000186238247373785!GO:0005764;lysosome;0.000186238247373785!GO:0000245;spliceosome assembly;0.000195431276746862!GO:0031324;negative regulation of cellular metabolic process;0.000201983090452215!GO:0003697;single-stranded DNA binding;0.000207198288344391!GO:0007243;protein kinase cascade;0.000217823681207361!GO:0005813;centrosome;0.000219063499961898!GO:0006888;ER to Golgi vesicle-mediated transport;0.000247018391525389!GO:0016072;rRNA metabolic process;0.000253631696650719!GO:0006082;organic acid metabolic process;0.00025459951515021!GO:0006839;mitochondrial transport;0.000254968524847103!GO:0051187;cofactor catabolic process;0.000257180221107448!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00025919949273075!GO:0015399;primary active transmembrane transporter activity;0.00025919949273075!GO:0005667;transcription factor complex;0.000280213470980471!GO:0016564;transcription repressor activity;0.000282066208852992!GO:0048518;positive regulation of biological process;0.000294550128172379!GO:0019752;carboxylic acid metabolic process;0.00029983190796477!GO:0016607;nuclear speck;0.000305409360059666!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000325791064685483!GO:0006403;RNA localization;0.000343764233318161!GO:0003899;DNA-directed RNA polymerase activity;0.000344245566252185!GO:0005815;microtubule organizing center;0.00035075852376421!GO:0008632;apoptotic program;0.000363648935731465!GO:0000314;organellar small ribosomal subunit;0.000395608071498752!GO:0005763;mitochondrial small ribosomal subunit;0.000395608071498752!GO:0003713;transcription coactivator activity;0.00040850290458861!GO:0050657;nucleic acid transport;0.00040850290458861!GO:0051236;establishment of RNA localization;0.00040850290458861!GO:0050658;RNA transport;0.00040850290458861!GO:0005874;microtubule;0.00040850290458861!GO:0009109;coenzyme catabolic process;0.000437317502117219!GO:0009892;negative regulation of metabolic process;0.000440752033626506!GO:0051427;hormone receptor binding;0.000508474944782505!GO:0006626;protein targeting to mitochondrion;0.000643257071279359!GO:0033116;ER-Golgi intermediate compartment membrane;0.000651121374919674!GO:0030176;integral to endoplasmic reticulum membrane;0.000698165293106835!GO:0006979;response to oxidative stress;0.000700657466926972!GO:0008250;oligosaccharyl transferase complex;0.000745440462563434!GO:0043681;protein import into mitochondrion;0.000781210508110373!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000799113380606001!GO:0048471;perinuclear region of cytoplasm;0.000819124094440704!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000821060925665743!GO:0032561;guanyl ribonucleotide binding;0.000821060925665743!GO:0019001;guanyl nucleotide binding;0.000821060925665743!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000855489445617716!GO:0031968;organelle outer membrane;0.000880073530828054!GO:0008637;apoptotic mitochondrial changes;0.000890945608265369!GO:0035257;nuclear hormone receptor binding;0.000950898157791071!GO:0009165;nucleotide biosynthetic process;0.000979551657972586!GO:0001558;regulation of cell growth;0.00105248665687471!GO:0016126;sterol biosynthetic process;0.00113319994679806!GO:0016779;nucleotidyltransferase activity;0.0011673461106333!GO:0030867;rough endoplasmic reticulum membrane;0.0012255598856897!GO:0008026;ATP-dependent helicase activity;0.00125343518747403!GO:0019867;outer membrane;0.00127883707887453!GO:0007006;mitochondrial membrane organization and biogenesis;0.0012810970803067!GO:0001726;ruffle;0.00135367375448083!GO:0005819;spindle;0.00135457901460757!GO:0009967;positive regulation of signal transduction;0.00137808383010099!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00138131373683145!GO:0016044;membrane organization and biogenesis;0.00140471054128683!GO:0046474;glycerophospholipid biosynthetic process;0.00150198421718136!GO:0043492;ATPase activity, coupled to movement of substances;0.00154237547057878!GO:0008361;regulation of cell size;0.00162771943089926!GO:0016049;cell growth;0.0016852747393336!GO:0005741;mitochondrial outer membrane;0.00173508945556268!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00173877658296991!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00184165320903502!GO:0051920;peroxiredoxin activity;0.00185340401511359!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00185340401511359!GO:0030027;lamellipodium;0.00200729522704497!GO:0005798;Golgi-associated vesicle;0.00216667785132486!GO:0001836;release of cytochrome c from mitochondria;0.00217133648605225!GO:0043065;positive regulation of apoptosis;0.00219903778535024!GO:0004386;helicase activity;0.00222171373567065!GO:0006778;porphyrin metabolic process;0.00228206793231798!GO:0033013;tetrapyrrole metabolic process;0.00228206793231798!GO:0051028;mRNA transport;0.00230915343775011!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00235449041932734!GO:0043068;positive regulation of programmed cell death;0.00251343662556153!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00260909953326654!GO:0015980;energy derivation by oxidation of organic compounds;0.00260909953326654!GO:0005791;rough endoplasmic reticulum;0.00268328127328404!GO:0030031;cell projection biogenesis;0.00273868050522374!GO:0046467;membrane lipid biosynthetic process;0.00274181690961148!GO:0006695;cholesterol biosynthetic process;0.00274876112063292!GO:0008283;cell proliferation;0.00277089530001891!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00290152522359593!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00293565326982196!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00297174506225197!GO:0005769;early endosome;0.0030856466771432!GO:0003676;nucleic acid binding;0.00308738682749433!GO:0045941;positive regulation of transcription;0.00309573997354753!GO:0007088;regulation of mitosis;0.0030962562077829!GO:0016481;negative regulation of transcription;0.00309756524185654!GO:0006520;amino acid metabolic process;0.00311405272246365!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00311405272246365!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00314566176768709!GO:0030118;clathrin coat;0.00319232641250418!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00343354024772724!GO:0005684;U2-dependent spliceosome;0.00345008459349268!GO:0018196;peptidyl-asparagine modification;0.00349687390062518!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00349687390062518!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00361692769614693!GO:0015992;proton transport;0.00361692769614693!GO:0006779;porphyrin biosynthetic process;0.00363035033668911!GO:0033014;tetrapyrrole biosynthetic process;0.00363035033668911!GO:0006414;translational elongation;0.0036697424680158!GO:0043488;regulation of mRNA stability;0.00372997424294563!GO:0043487;regulation of RNA stability;0.00372997424294563!GO:0040008;regulation of growth;0.00375800109214675!GO:0006818;hydrogen transport;0.00377282995291078!GO:0005048;signal sequence binding;0.00379253480710863!GO:0007264;small GTPase mediated signal transduction;0.00385805500338881!GO:0016859;cis-trans isomerase activity;0.00393946258719061!GO:0000151;ubiquitin ligase complex;0.00393946258719061!GO:0005885;Arp2/3 protein complex;0.00431062108179086!GO:0051348;negative regulation of transferase activity;0.00435587726296454!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00435587726296454!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00435587726296454!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00435587726296454!GO:0006007;glucose catabolic process;0.00469641263165379!GO:0033673;negative regulation of kinase activity;0.00471679421687206!GO:0006469;negative regulation of protein kinase activity;0.00471679421687206!GO:0043566;structure-specific DNA binding;0.00486202744072543!GO:0043021;ribonucleoprotein binding;0.0051117381477867!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00514702944455877!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00525639006808294!GO:0006595;polyamine metabolic process;0.00542622130807974!GO:0006740;NADPH regeneration;0.00571721101862724!GO:0006098;pentose-phosphate shunt;0.00571721101862724!GO:0006509;membrane protein ectodomain proteolysis;0.00571721101862724!GO:0033619;membrane protein proteolysis;0.00571721101862724!GO:0042168;heme metabolic process;0.00571721101862724!GO:0017166;vinculin binding;0.00584698698419788!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00584698698419788!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00584698698419788!GO:0030132;clathrin coat of coated pit;0.00596179239812125!GO:0005774;vacuolar membrane;0.00609421797257364!GO:0030133;transport vesicle;0.00609422687936188!GO:0046489;phosphoinositide biosynthetic process;0.00617305056732351!GO:0000082;G1/S transition of mitotic cell cycle;0.00632169636822887!GO:0050790;regulation of catalytic activity;0.00642507197001626!GO:0004576;oligosaccharyl transferase activity;0.0064408663397785!GO:0045893;positive regulation of transcription, DNA-dependent;0.0064408663397785!GO:0008092;cytoskeletal protein binding;0.00650868000617359!GO:0030119;AP-type membrane coat adaptor complex;0.00656193377216497!GO:0032508;DNA duplex unwinding;0.00671828157072029!GO:0032392;DNA geometric change;0.00671828157072029!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00676138035107136!GO:0015002;heme-copper terminal oxidase activity;0.00676138035107136!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00676138035107136!GO:0004129;cytochrome-c oxidase activity;0.00676138035107136!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00703820576974336!GO:0048487;beta-tubulin binding;0.00741656091311316!GO:0005996;monosaccharide metabolic process;0.00742751405193301!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00744419317645089!GO:0031902;late endosome membrane;0.00805072874200505!GO:0008094;DNA-dependent ATPase activity;0.00836384032716181!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00855725260620378!GO:0006613;cotranslational protein targeting to membrane;0.00864701461289213!GO:0007040;lysosome organization and biogenesis;0.0089136502310997!GO:0008629;induction of apoptosis by intracellular signals;0.00897872959931903!GO:0006783;heme biosynthetic process;0.00902520361257271!GO:0016301;kinase activity;0.00902520361257271!GO:0016272;prefoldin complex;0.00908224005161839!GO:0046483;heterocycle metabolic process;0.00923724531716216!GO:0030131;clathrin adaptor complex;0.00932742257225293!GO:0019318;hexose metabolic process;0.00939194353384249!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00939194353384249!GO:0006401;RNA catabolic process;0.00945792400271314!GO:0000075;cell cycle checkpoint;0.00964531024474626!GO:0003724;RNA helicase activity;0.00971937079885772!GO:0006402;mRNA catabolic process;0.010324396028313!GO:0051252;regulation of RNA metabolic process;0.0104404299868904!GO:0006672;ceramide metabolic process;0.0107190779500557!GO:0006268;DNA unwinding during replication;0.0108052783235509!GO:0051168;nuclear export;0.0108135396932775!GO:0006950;response to stress;0.0108781282200176!GO:0043284;biopolymer biosynthetic process;0.0110194594801462!GO:0006749;glutathione metabolic process;0.0110194594801462!GO:0046519;sphingoid metabolic process;0.0110194594801462!GO:0003729;mRNA binding;0.0110194594801462!GO:0046870;cadmium ion binding;0.0112684089884927!GO:0004674;protein serine/threonine kinase activity;0.0116927433677491!GO:0004680;casein kinase activity;0.0119777630376861!GO:0051101;regulation of DNA binding;0.0124035178506448!GO:0050662;coenzyme binding;0.0126556315868856!GO:0044437;vacuolar part;0.0127402447231551!GO:0008047;enzyme activator activity;0.0129386673454371!GO:0007051;spindle organization and biogenesis;0.0131393882043935!GO:0005657;replication fork;0.0136478117437596!GO:0004177;aminopeptidase activity;0.0136684568223601!GO:0006066;alcohol metabolic process;0.0136684568223601!GO:0006289;nucleotide-excision repair;0.0137436121677698!GO:0050794;regulation of cellular process;0.0137454250509045!GO:0003684;damaged DNA binding;0.0137962696877475!GO:0048037;cofactor binding;0.0140865799754758!GO:0030658;transport vesicle membrane;0.0141979376197793!GO:0030880;RNA polymerase complex;0.0143268046797612!GO:0001666;response to hypoxia;0.0143268046797612!GO:0006917;induction of apoptosis;0.0145144530675564!GO:0051789;response to protein stimulus;0.0146151093377657!GO:0006986;response to unfolded protein;0.0146151093377657!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0149288510292792!GO:0007033;vacuole organization and biogenesis;0.0152518978363682!GO:0040029;regulation of gene expression, epigenetic;0.0152893894626602!GO:0043154;negative regulation of caspase activity;0.0156054796956403!GO:0007346;regulation of progression through mitotic cell cycle;0.0163331329916103!GO:0046365;monosaccharide catabolic process;0.0166170720885003!GO:0007017;microtubule-based process;0.0172918397799612!GO:0035258;steroid hormone receptor binding;0.0173781014952679!GO:0004860;protein kinase inhibitor activity;0.0175791745391809!GO:0000096;sulfur amino acid metabolic process;0.0180609207617496!GO:0012502;induction of programmed cell death;0.0184726576658336!GO:0051287;NAD binding;0.0187406467437412!GO:0005862;muscle thin filament tropomyosin;0.0190681832671986!GO:0005765;lysosomal membrane;0.0193158282232375!GO:0030660;Golgi-associated vesicle membrane;0.0203916474519927!GO:0006118;electron transport;0.0204236167905247!GO:0030032;lamellipodium biogenesis;0.0207724672435234!GO:0006261;DNA-dependent DNA replication;0.0211490006837204!GO:0019320;hexose catabolic process;0.0211656093421151!GO:0030659;cytoplasmic vesicle membrane;0.0216385742737501!GO:0046822;regulation of nucleocytoplasmic transport;0.0217589395899021!GO:0006790;sulfur metabolic process;0.0221360673876886!GO:0016070;RNA metabolic process;0.0222788239717352!GO:0007242;intracellular signaling cascade;0.0222962745596305!GO:0006284;base-excision repair;0.0223721995660981!GO:0005975;carbohydrate metabolic process;0.0226174192375142!GO:0043086;negative regulation of catalytic activity;0.0226174192375142!GO:0016125;sterol metabolic process;0.0227741159004248!GO:0006383;transcription from RNA polymerase III promoter;0.0227741159004248!GO:0030125;clathrin vesicle coat;0.0228911495390901!GO:0030665;clathrin coated vesicle membrane;0.0228911495390901!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0229701033076478!GO:0005856;cytoskeleton;0.0232545853524607!GO:0000123;histone acetyltransferase complex;0.0233802018862663!GO:0000059;protein import into nucleus, docking;0.023709877101899!GO:0006739;NADP metabolic process;0.0240737384357575!GO:0031970;organelle envelope lumen;0.0242659252955854!GO:0045892;negative regulation of transcription, DNA-dependent;0.0242987999440873!GO:0005637;nuclear inner membrane;0.0242987999440873!GO:0003756;protein disulfide isomerase activity;0.0242987999440873!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0242987999440873!GO:0003682;chromatin binding;0.0249545404690793!GO:0008538;proteasome activator activity;0.0252227985090685!GO:0006807;nitrogen compound metabolic process;0.0252227985090685!GO:0008022;protein C-terminus binding;0.0252397794820066!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0252450393629228!GO:0043189;H4/H2A histone acetyltransferase complex;0.0255136730871212!GO:0030145;manganese ion binding;0.0256090900648485!GO:0051338;regulation of transferase activity;0.0266628813655852!GO:0016860;intramolecular oxidoreductase activity;0.0266628813655852!GO:0043414;biopolymer methylation;0.0270294090553579!GO:0006458;'de novo' protein folding;0.027043743826367!GO:0051084;'de novo' posttranslational protein folding;0.027043743826367!GO:0008139;nuclear localization sequence binding;0.027043743826367!GO:0050178;phenylpyruvate tautomerase activity;0.0272507605038975!GO:0016363;nuclear matrix;0.0274759683563244!GO:0005758;mitochondrial intermembrane space;0.0277398315975751!GO:0046164;alcohol catabolic process;0.0282613676024902!GO:0009303;rRNA transcription;0.0284890892792273!GO:0008652;amino acid biosynthetic process;0.0285532354261358!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0285532354261358!GO:0010257;NADH dehydrogenase complex assembly;0.0285532354261358!GO:0033108;mitochondrial respiratory chain complex assembly;0.0285532354261358!GO:0008186;RNA-dependent ATPase activity;0.0285963178114673!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0295219134437942!GO:0000428;DNA-directed RNA polymerase complex;0.0295219134437942!GO:0033559;unsaturated fatty acid metabolic process;0.0296060701596282!GO:0006636;unsaturated fatty acid biosynthetic process;0.0296060701596282!GO:0046394;carboxylic acid biosynthetic process;0.0299117439240021!GO:0016053;organic acid biosynthetic process;0.0299117439240021!GO:0006633;fatty acid biosynthetic process;0.0301669176258973!GO:0005869;dynactin complex;0.0306168489914281!GO:0008625;induction of apoptosis via death domain receptors;0.0306168489914281!GO:0016311;dephosphorylation;0.0308904587701886!GO:0030134;ER to Golgi transport vesicle;0.0317213381924981!GO:0003678;DNA helicase activity;0.0317433152603387!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0318515256398762!GO:0051087;chaperone binding;0.0325266106746144!GO:0008243;plasminogen activator activity;0.0327160265345932!GO:0035267;NuA4 histone acetyltransferase complex;0.0328075072936807!GO:0019206;nucleoside kinase activity;0.0331083489983635!GO:0007265;Ras protein signal transduction;0.0331083489983635!GO:0006096;glycolysis;0.0332144109659921!GO:0000209;protein polyubiquitination;0.0348032306407687!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0350223243689771!GO:0006519;amino acid and derivative metabolic process;0.0358372172927636!GO:0032507;maintenance of cellular protein localization;0.0358757477505503!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0359392057835013!GO:0044275;cellular carbohydrate catabolic process;0.036154743866892!GO:0000118;histone deacetylase complex;0.0370436462873307!GO:0008033;tRNA processing;0.0370436462873307!GO:0006730;one-carbon compound metabolic process;0.0371799790122632!GO:0016197;endosome transport;0.0374606208945426!GO:0019904;protein domain specific binding;0.0378081108026296!GO:0005938;cell cortex;0.0386780332755157!GO:0006612;protein targeting to membrane;0.0390779318002758!GO:0043281;regulation of caspase activity;0.0394760316839978!GO:0043549;regulation of kinase activity;0.0401739315209264!GO:0008286;insulin receptor signaling pathway;0.0401739315209264!GO:0006897;endocytosis;0.0404856350816895!GO:0010324;membrane invagination;0.0404856350816895!GO:0030521;androgen receptor signaling pathway;0.0412541170901608!GO:0006650;glycerophospholipid metabolic process;0.0423086980685117!GO:0043433;negative regulation of transcription factor activity;0.0424968424502251!GO:0022890;inorganic cation transmembrane transporter activity;0.0433979409883497!GO:0030508;thiol-disulfide exchange intermediate activity;0.0436497164656888!GO:0031072;heat shock protein binding;0.0439775526458693!GO:0000086;G2/M transition of mitotic cell cycle;0.0439854526151564!GO:0031529;ruffle organization and biogenesis;0.0439854526151564!GO:0000305;response to oxygen radical;0.0439854526151564!GO:0016791;phosphoric monoester hydrolase activity;0.0453836722027703!GO:0035035;histone acetyltransferase binding;0.0457857998357171!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0460405808088643!GO:0042393;histone binding;0.0461942938166084!GO:0051085;chaperone cofactor-dependent protein folding;0.0462658105189931!GO:0000902;cell morphogenesis;0.0462874256584412!GO:0032989;cellular structure morphogenesis;0.0462874256584412!GO:0006506;GPI anchor biosynthetic process;0.0471490559445569!GO:0032259;methylation;0.0471490559445569!GO:0009308;amine metabolic process;0.048477281640737!GO:0006611;protein export from nucleus;0.0490778313625049!GO:0015631;tubulin binding;0.0494799885555684!GO:0003711;transcription elongation regulator activity;0.0499844509281079 | |||
|sample_id=11597 | |sample_id=11597 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=RXRA_VDR{dimer}:1.69079465159;MYOD1:1.5593028254;EBF1:1.52791851721;ZNF423:1.5051925538;PBX1:1.47010363761;ESRRA:1.40562969029;XCPE1{core}:1.38223370467;TFAP2{A,C}:1.26809197771;GTF2A1,2:1.18440108268;HNF1A:1.17054537194;ZNF148:1.1535193292;POU2F1..3:1.14786601393;SNAI1..3:1.10915229318;HOX{A5,B5}:1.0903993999;NR5A1,2:1.08613183095;LMO2:1.01211095678;ZEB1:1.00450064977;LEF1_TCF7_TCF7L1,2:0.996847868608;NKX2-3_NKX2-5:0.979724661292;RXR{A,B,G}:0.946028511427;TFCP2:0.944912841518;GZF1:0.923210445896;STAT5{A,B}:0.87702004392;PAX8:0.862451001241;GFI1:0.837644560232;NR3C1:0.829852537397;FOXQ1:0.82483406103;ONECUT1,2:0.793338152123;TP53:0.720021242765;SPZ1:0.702926593938;MTF1:0.662043098573;TBP:0.638891666487;GLI1..3:0.635358845384;IKZF1:0.592024119446;TBX4,5:0.554349044064;ZBTB6:0.549839927704;NR6A1:0.522422035578;PPARG:0.519124119591;LHX3,4:0.512586316105;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.501006363801;ADNP_IRX_SIX_ZHX:0.499894901077;VSX1,2:0.464123095259;TFAP2B:0.445759325116;SP1:0.444975105596;PRRX1,2:0.42981479282;ZIC1..3:0.415370541837;FOSL2:0.409223422989;TEAD1:0.370664661926;NR1H4:0.361627291081;RREB1:0.358337025149;HNF4A_NR2F1,2:0.356355977809;SOX2:0.34812876875;E2F1..5:0.321547295678;GCM1,2:0.279275064326;JUN:0.272873257261;PAX1,9:0.256432634621;bHLH_family:0.242308250068;HIC1:0.242034751602;CRX:0.215068014028;TFDP1:0.213485948355;POU1F1:0.2125281664;SRF:0.183402036418;TLX1..3_NFIC{dimer}:0.181468466988;SOX{8,9,10}:0.170766345009;NFE2L2:0.170554136038;FOS_FOS{B,L1}_JUN{B,D}:0.162541842084;MEF2{A,B,C,D}:0.113734086579;BACH2:0.101829933075;STAT2,4,6:0.0798944158511;NFKB1_REL_RELA:0.057564395458;GTF2I:0.045436836423;POU5F1:0.0337071831764;ESR1:0.0200469577023;NFY{A,B,C}:0.0193293753314;OCT4_SOX2{dimer}:0.00174752104983;HOX{A6,A7,B6,B7}:-0.0160382792502;NHLH1,2:-0.0183274280742;UFEwm:-0.0215784204713;DBP:-0.0380240785229;NFE2:-0.0397320267986;RFX1:-0.0460005604245;REST:-0.0537728870977;SMAD1..7,9:-0.065629219569;EP300:-0.072042170556;NANOG:-0.0944973133943;GATA6:-0.104272539655;EN1,2:-0.112038998218;RORA:-0.127892451094;MED-1{core}:-0.135299449142;GFI1B:-0.141323393222;POU6F1:-0.148017039577;KLF4:-0.155591165652;SOX17:-0.163583685953;HOXA9_MEIS1:-0.173165404573;T:-0.183640224709;HES1:-0.191197422726;NFE2L1:-0.194604193207;HAND1,2:-0.196789523003;HMX1:-0.227882522083;PAX6:-0.228791077575;AR:-0.231938455755;CUX2:-0.237054370365;XBP1:-0.243363539548;TEF:-0.247589945238;PATZ1:-0.268209066153;SOX5:-0.269775340267;FOXL1:-0.275407969453;ALX1:-0.284077432769;PITX1..3:-0.297859865282;TFAP4:-0.299173587713;RUNX1..3:-0.311471682614;HLF:-0.31321416004;MZF1:-0.339082397791;CDC5L:-0.340647059074;MYB:-0.341197417347;MAZ:-0.35234506596;CEBPA,B_DDIT3:-0.353692828001;ETS1,2:-0.359666948873;ARID5B:-0.385461276003;FOX{F1,F2,J1}:-0.391328754422;ATF2:-0.45495440223;NFIL3:-0.470223390115;MYBL2:-0.476505343269;MTE{core}:-0.490438657679;SPIB:-0.500909387612;BREu{core}:-0.51315565667;POU3F1..4:-0.534397292857;TOPORS:-0.544211175622;ZFP161:-0.556561720444;FOXM1:-0.597692102905;SPI1:-0.634481751431;EGR1..3:-0.639601759406;PAX5:-0.650747968396;ZNF238:-0.663888921271;NFATC1..3:-0.666353392471;ZNF143:-0.67827443637;STAT1,3:-0.680642853318;HBP1_HMGB_SSRP1_UBTF:-0.724962198684;RFX2..5_RFXANK_RFXAP:-0.744703275024;ALX4:-0.759679572204;HOX{A4,D4}:-0.765917860346;FOXP3:-0.775677156228;TAL1_TCF{3,4,12}:-0.783992714055;NFIX:-0.786499664615;NANOG{mouse}:-0.794003867563;NKX3-2:-0.814071347922;NKX2-2,8:-0.816601012136;NKX3-1:-0.820781140186;FOXA2:-0.858679179985;MYFfamily:-0.871824907442;PRDM1:-0.884819287585;IRF1,2:-0.893761410357;YY1:-0.915407729026;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.918580675469;FOXD3:-0.919554530667;CDX1,2,4:-0.926067688856;ATF6:-0.928076738446;NRF1:-0.959059996079;EVI1:-0.966346102903;PDX1:-1.00189155339;ZNF384:-1.00973970687;TGIF1:-1.00985824671;FOX{D1,D2}:-1.03300765668;PAX2:-1.0602421049;FOXP1:-1.08267907092;ATF4:-1.09716432341;ATF5_CREB3:-1.10502581546;IRF7:-1.12849527584;IKZF2:-1.19532362669;SREBF1,2:-1.21907724234;HSF1,2:-1.22536268012;ZBTB16:-1.25109641515;TLX2:-1.27081823325;PAX4:-1.28941538095;AHR_ARNT_ARNT2:-1.30053450745;HIF1A:-1.3148766951;ELK1,4_GABP{A,B1}:-1.33062399958;NKX6-1,2:-1.3365549607;FOX{I1,J2}:-1.35635098188;GATA4:-1.38145023029;PAX3,7:-1.42145545917;MAFB:-1.4469155036;FOXO1,3,4:-1.47733674915;DMAP1_NCOR{1,2}_SMARC:-1.48601491801;ELF1,2,4:-1.49226943254;BPTF:-1.5826942658;CREB1:-1.66282791244;FOXN1:-1.69251639846;AIRE:-1.72600888165;NKX2-1,4:-1.9962610198;HMGA1,2:-2.26668217779;RBPJ:-2.36468008905 | |top_motifs=RXRA_VDR{dimer}:1.69079465159;MYOD1:1.5593028254;EBF1:1.52791851721;ZNF423:1.5051925538;PBX1:1.47010363761;ESRRA:1.40562969029;XCPE1{core}:1.38223370467;TFAP2{A,C}:1.26809197771;GTF2A1,2:1.18440108268;HNF1A:1.17054537194;ZNF148:1.1535193292;POU2F1..3:1.14786601393;SNAI1..3:1.10915229318;HOX{A5,B5}:1.0903993999;NR5A1,2:1.08613183095;LMO2:1.01211095678;ZEB1:1.00450064977;LEF1_TCF7_TCF7L1,2:0.996847868608;NKX2-3_NKX2-5:0.979724661292;RXR{A,B,G}:0.946028511427;TFCP2:0.944912841518;GZF1:0.923210445896;STAT5{A,B}:0.87702004392;PAX8:0.862451001241;GFI1:0.837644560232;NR3C1:0.829852537397;FOXQ1:0.82483406103;ONECUT1,2:0.793338152123;TP53:0.720021242765;SPZ1:0.702926593938;MTF1:0.662043098573;TBP:0.638891666487;GLI1..3:0.635358845384;IKZF1:0.592024119446;TBX4,5:0.554349044064;ZBTB6:0.549839927704;NR6A1:0.522422035578;PPARG:0.519124119591;LHX3,4:0.512586316105;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.501006363801;ADNP_IRX_SIX_ZHX:0.499894901077;VSX1,2:0.464123095259;TFAP2B:0.445759325116;SP1:0.444975105596;PRRX1,2:0.42981479282;ZIC1..3:0.415370541837;FOSL2:0.409223422989;TEAD1:0.370664661926;NR1H4:0.361627291081;RREB1:0.358337025149;HNF4A_NR2F1,2:0.356355977809;SOX2:0.34812876875;E2F1..5:0.321547295678;GCM1,2:0.279275064326;JUN:0.272873257261;PAX1,9:0.256432634621;bHLH_family:0.242308250068;HIC1:0.242034751602;CRX:0.215068014028;TFDP1:0.213485948355;POU1F1:0.2125281664;SRF:0.183402036418;TLX1..3_NFIC{dimer}:0.181468466988;SOX{8,9,10}:0.170766345009;NFE2L2:0.170554136038;FOS_FOS{B,L1}_JUN{B,D}:0.162541842084;MEF2{A,B,C,D}:0.113734086579;BACH2:0.101829933075;STAT2,4,6:0.0798944158511;NFKB1_REL_RELA:0.057564395458;GTF2I:0.045436836423;POU5F1:0.0337071831764;ESR1:0.0200469577023;NFY{A,B,C}:0.0193293753314;OCT4_SOX2{dimer}:0.00174752104983;HOX{A6,A7,B6,B7}:-0.0160382792502;NHLH1,2:-0.0183274280742;UFEwm:-0.0215784204713;DBP:-0.0380240785229;NFE2:-0.0397320267986;RFX1:-0.0460005604245;REST:-0.0537728870977;SMAD1..7,9:-0.065629219569;EP300:-0.072042170556;NANOG:-0.0944973133943;GATA6:-0.104272539655;EN1,2:-0.112038998218;RORA:-0.127892451094;MED-1{core}:-0.135299449142;GFI1B:-0.141323393222;POU6F1:-0.148017039577;KLF4:-0.155591165652;SOX17:-0.163583685953;HOXA9_MEIS1:-0.173165404573;T:-0.183640224709;HES1:-0.191197422726;NFE2L1:-0.194604193207;HAND1,2:-0.196789523003;HMX1:-0.227882522083;PAX6:-0.228791077575;AR:-0.231938455755;CUX2:-0.237054370365;XBP1:-0.243363539548;TEF:-0.247589945238;PATZ1:-0.268209066153;SOX5:-0.269775340267;FOXL1:-0.275407969453;ALX1:-0.284077432769;PITX1..3:-0.297859865282;TFAP4:-0.299173587713;RUNX1..3:-0.311471682614;HLF:-0.31321416004;MZF1:-0.339082397791;CDC5L:-0.340647059074;MYB:-0.341197417347;MAZ:-0.35234506596;CEBPA,B_DDIT3:-0.353692828001;ETS1,2:-0.359666948873;ARID5B:-0.385461276003;FOX{F1,F2,J1}:-0.391328754422;ATF2:-0.45495440223;NFIL3:-0.470223390115;MYBL2:-0.476505343269;MTE{core}:-0.490438657679;SPIB:-0.500909387612;BREu{core}:-0.51315565667;POU3F1..4:-0.534397292857;TOPORS:-0.544211175622;ZFP161:-0.556561720444;FOXM1:-0.597692102905;SPI1:-0.634481751431;EGR1..3:-0.639601759406;PAX5:-0.650747968396;ZNF238:-0.663888921271;NFATC1..3:-0.666353392471;ZNF143:-0.67827443637;STAT1,3:-0.680642853318;HBP1_HMGB_SSRP1_UBTF:-0.724962198684;RFX2..5_RFXANK_RFXAP:-0.744703275024;ALX4:-0.759679572204;HOX{A4,D4}:-0.765917860346;FOXP3:-0.775677156228;TAL1_TCF{3,4,12}:-0.783992714055;NFIX:-0.786499664615;NANOG{mouse}:-0.794003867563;NKX3-2:-0.814071347922;NKX2-2,8:-0.816601012136;NKX3-1:-0.820781140186;FOXA2:-0.858679179985;MYFfamily:-0.871824907442;PRDM1:-0.884819287585;IRF1,2:-0.893761410357;YY1:-0.915407729026;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.918580675469;FOXD3:-0.919554530667;CDX1,2,4:-0.926067688856;ATF6:-0.928076738446;NRF1:-0.959059996079;EVI1:-0.966346102903;PDX1:-1.00189155339;ZNF384:-1.00973970687;TGIF1:-1.00985824671;FOX{D1,D2}:-1.03300765668;PAX2:-1.0602421049;FOXP1:-1.08267907092;ATF4:-1.09716432341;ATF5_CREB3:-1.10502581546;IRF7:-1.12849527584;IKZF2:-1.19532362669;SREBF1,2:-1.21907724234;HSF1,2:-1.22536268012;ZBTB16:-1.25109641515;TLX2:-1.27081823325;PAX4:-1.28941538095;AHR_ARNT_ARNT2:-1.30053450745;HIF1A:-1.3148766951;ELK1,4_GABP{A,B1}:-1.33062399958;NKX6-1,2:-1.3365549607;FOX{I1,J2}:-1.35635098188;GATA4:-1.38145023029;PAX3,7:-1.42145545917;MAFB:-1.4469155036;FOXO1,3,4:-1.47733674915;DMAP1_NCOR{1,2}_SMARC:-1.48601491801;ELF1,2,4:-1.49226943254;BPTF:-1.5826942658;CREB1:-1.66282791244;FOXN1:-1.69251639846;AIRE:-1.72600888165;NKX2-1,4:-1.9962610198;HMGA1,2:-2.26668217779;RBPJ:-2.36468008905 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11597-120H4;search_select_hide=table117:FF:11597-120H4 | |||
}} | }} | ||
Latest revision as of 18:11, 4 June 2020
| Name: | Renal Epithelial Cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12088 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12088
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12088
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.876 |
| 10 | 10 | 0.327 |
| 100 | 100 | 0.417 |
| 101 | 101 | 0.272 |
| 102 | 102 | 0.675 |
| 103 | 103 | 0.577 |
| 104 | 104 | 0.53 |
| 105 | 105 | 0.0229 |
| 106 | 106 | 0.0307 |
| 107 | 107 | 0.00217 |
| 108 | 108 | 0.578 |
| 109 | 109 | 0.319 |
| 11 | 11 | 0.168 |
| 110 | 110 | 0.294 |
| 111 | 111 | 0.949 |
| 112 | 112 | 0.605 |
| 113 | 113 | 0.429 |
| 114 | 114 | 0.749 |
| 115 | 115 | 0.665 |
| 116 | 116 | 0.306 |
| 117 | 117 | 0.864 |
| 118 | 118 | 0.793 |
| 119 | 119 | 0.37 |
| 12 | 12 | 0.303 |
| 120 | 120 | 0.29 |
| 121 | 121 | 0.704 |
| 122 | 122 | 0.216 |
| 123 | 123 | 0.415 |
| 124 | 124 | 0.733 |
| 125 | 125 | 0.827 |
| 126 | 126 | 0.603 |
| 127 | 127 | 0.159 |
| 128 | 128 | 0.164 |
| 129 | 129 | 0.00212 |
| 13 | 13 | 0.391 |
| 130 | 130 | 0.278 |
| 131 | 131 | 0.354 |
| 132 | 132 | 0.122 |
| 133 | 133 | 0.0791 |
| 134 | 134 | 0.942 |
| 135 | 135 | 0.775 |
| 136 | 136 | 0.984 |
| 137 | 137 | 0.269 |
| 138 | 138 | 0.289 |
| 139 | 139 | 0.568 |
| 14 | 14 | 0.551 |
| 140 | 140 | 0.335 |
| 141 | 141 | 0.526 |
| 142 | 142 | 0.197 |
| 143 | 143 | 0.171 |
| 144 | 144 | 0.695 |
| 145 | 145 | 0.255 |
| 146 | 146 | 0.0719 |
| 147 | 147 | 0.321 |
| 148 | 148 | 0.907 |
| 149 | 149 | 0.125 |
| 15 | 15 | 0.393 |
| 150 | 150 | 0.352 |
| 151 | 151 | 0.573 |
| 152 | 152 | 0.136 |
| 153 | 153 | 0.0855 |
| 154 | 154 | 0.254 |
| 155 | 155 | 0.573 |
| 156 | 156 | 0.226 |
| 157 | 157 | 0.267 |
| 158 | 158 | 0.971 |
| 159 | 159 | 0.76 |
| 16 | 16 | 0.242 |
| 160 | 160 | 0.00205 |
| 161 | 161 | 1 |
| 162 | 162 | 0.181 |
| 163 | 163 | 0.931 |
| 164 | 164 | 0.621 |
| 165 | 165 | 0.866 |
| 166 | 166 | 0.974 |
| 167 | 167 | 0.46 |
| 168 | 168 | 0.899 |
| 169 | 169 | 0.0997 |
| 17 | 17 | 0.199 |
| 18 | 18 | 0.289 |
| 19 | 19 | 0.34 |
| 2 | 2 | 0.318 |
| 20 | 20 | 0.691 |
| 21 | 21 | 0.605 |
| 22 | 22 | 0.193 |
| 23 | 23 | 0.192 |
| 24 | 24 | 0.839 |
| 25 | 25 | 0.873 |
| 26 | 26 | 0.0813 |
| 27 | 27 | 0.169 |
| 28 | 28 | 0.371 |
| 29 | 29 | 0.688 |
| 3 | 3 | 0.792 |
| 30 | 30 | 0.142 |
| 31 | 31 | 0.403 |
| 32 | 32 | 0.925 |
| 33 | 33 | 0.0878 |
| 34 | 34 | 0.335 |
| 35 | 35 | 0.841 |
| 36 | 36 | 0.539 |
| 37 | 37 | 0.39 |
| 38 | 38 | 0.392 |
| 39 | 39 | 0.199 |
| 4 | 4 | 0.0556 |
| 40 | 40 | 0.00252 |
| 41 | 41 | 0.997 |
| 42 | 42 | 0.874 |
| 43 | 43 | 0.462 |
| 44 | 44 | 0.847 |
| 45 | 45 | 0.177 |
| 46 | 46 | 0.235 |
| 47 | 47 | 0.553 |
| 48 | 48 | 0.263 |
| 49 | 49 | 0.427 |
| 5 | 5 | 0.725 |
| 50 | 50 | 0.439 |
| 51 | 51 | 0.346 |
| 52 | 52 | 0.341 |
| 53 | 53 | 0.672 |
| 54 | 54 | 0.415 |
| 55 | 55 | 0.983 |
| 56 | 56 | 0.256 |
| 57 | 57 | 0.158 |
| 58 | 58 | 0.97 |
| 59 | 59 | 0.0217 |
| 6 | 6 | 0.324 |
| 60 | 60 | 0.304 |
| 61 | 61 | 0.397 |
| 62 | 62 | 0.943 |
| 63 | 63 | 0.198 |
| 64 | 64 | 0.139 |
| 65 | 65 | 0.0558 |
| 66 | 66 | 0.268 |
| 67 | 67 | 0.617 |
| 68 | 68 | 0.633 |
| 69 | 69 | 0.0574 |
| 7 | 7 | 0.765 |
| 70 | 70 | 0.363 |
| 71 | 71 | 0.777 |
| 72 | 72 | 0.765 |
| 73 | 73 | 0.129 |
| 74 | 74 | 0.402 |
| 75 | 75 | 0.899 |
| 76 | 76 | 0.206 |
| 77 | 77 | 0.0323 |
| 78 | 78 | 0.708 |
| 79 | 79 | 0.829 |
| 8 | 8 | 0.0549 |
| 80 | 80 | 0.977 |
| 81 | 81 | 0.706 |
| 82 | 82 | 0.816 |
| 83 | 83 | 0.716 |
| 84 | 84 | 0.488 |
| 85 | 85 | 0.707 |
| 86 | 86 | 0.696 |
| 87 | 87 | 0.179 |
| 88 | 88 | 0.5 |
| 89 | 89 | 0.139 |
| 9 | 9 | 0.513 |
| 90 | 90 | 0.243 |
| 91 | 91 | 0.0724 |
| 92 | 92 | 0.909 |
| 93 | 93 | 0.895 |
| 94 | 94 | 0.448 |
| 95 | 95 | 0.415 |
| 96 | 96 | 0.572 |
| 97 | 97 | 0.969 |
| 98 | 98 | 0.136 |
| 99 | 99 | 0.0109 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12088
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
1000494 (nephron tubule epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
