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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008331
|DRA_sample_Accession=CAGE@SAMD00005901
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005901
|accession_numbers=CAGE;DRX008439;DRR009311;DRZ000736;DRZ002121;DRZ012086;DRZ013471
|accession_numbers_RNASeq=sRNA-Seq;DRX037075;DRR041441;DRZ007083
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0006853,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0007685,UBERON:0004810,UBERON:0001285,UBERON:0004134,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0006853,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0007685,UBERON:0004810,UBERON:0001285,UBERON:0004134,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0002078,CL:0000255,CL:0000239,CL:1000615,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:0002306
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0002078,CL:0000255,CL:0000239,CL:1000615,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:0002306
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.03!106.79!PAX8;;chr17:46703687..46703740,-!p1@HOXB9!2.02!103.43!HOXB9;;chr17:36105042..36105060,-!p1@HNF1B!1.96!91.12!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!1.67!45.45!ELF3;;chr6:50786591..50786614,+!p1@TFAP2B!1.66!45.22!TFAP2B;;chr17:46682321..46682362,-!p1@HOXB6!1.65!44.10!HOXB6;;chr7:27205136..27205164,-!p1@HOXA9!1.65!43.43!HOXA9;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.70!ELF3;;chr17:35294075..35294102,+!p1@ENST00000559335!1.54!33.58!LHX1;;chr6:34204921..34204939,+!p3@HMGA1!1.46!803.71!HMGA1;;chr17:7493405..7493419,-!p1@SOX15!1.46!27.76!SOX15;;chr7:27205106..27205134,-!p2@HOXA9!1.46!27.54!HOXA9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.37!22.39!POU3F3;;chr17:46622205..46622218,-!p3@HOXB2!1.32!22.84!HOXB2;;chr17:46703826..46703845,-!p3@HOXB9!1.31!19.48!HOXB9;;chr7:27196217..27196246,-!p2@HOXA7!1.29!18.36!HOXA7;;chr17:46667594..46667619,-!p1@HOXB3!1.28!17.91!HOXB3;;chr7:27153454..27153469,-!p2@HOXA3!1.26!17.24!HOXA3;;chr17:46675558..46675577,-!p2@HOXB6!1.25!16.79!HOXB6;;chr16:86600426..86600441,+!p1@FOXC2!1.24!40.52!FOXC2;;chr16:51185172..51185197,-!p1@SALL1!1.22!15.67!SALL1;;chr6:34204672..34204692,+!p1@HMGA1!1.19!1583.69!HMGA1;;chr2:5832508..5832524,+!p1@SOX11!1.17!13.88!SOX11;;chr5:2751762..2751784,-!p1@IRX2!1.16!13.43!IRX2;;chr12:66218255..66218304,+!p3@HMGA2!1.15!35.15!HMGA2;;chr17:46690839..46690884,-!p1@HOXB8!1.14!12.76!HOXB8;;chr17:46692624..46692659,-!p3@HOXB8!1.13!12.54!HOXB8;;chr2:176994408..176994492,+!p1@HOXD8!1.13!12.54!HOXD8;;chr21:38071430..38071456,+!p1@SIM2!1.12!12.31!SIM2;;chr12:66218598..66218645,+!p2@HMGA2!1.10!53.95!HMGA2;;chr7:27224842..27224872,-!p1@HOXA11!1.09!11.19!HOXA11;;chr1:209979467..209979494,-!p1@IRF6!1.08!12.54!IRF6;;chr17:46688334..46688385,-!p1@HOXB7!1.07!15.67!HOXB7;;chr7:27170359..27170381,-!p1@HOXA4!1.07!10.75!HOXA4;;chr5:72744594..72744609,-!p1@FOXD1!1.06!48.36!FOXD1;;chr17:7492684..7492778,-!p2@SOX15!1.06!22.39!SOX15;;chr11:61520075..61520136,+!p1@C11orf9!1.05!21.94!C11orf9;;chr17:46622229..46622257,-!p6@HOXB2!1.05!11.87!HOXB2;;chr17:46622440..46622477,-!p5@HOXB2!1.05!11.42!HOXB2;;chr2:177016336..177016350,+!p1@HOXD4!1.05!10.30!HOXD4;;chr12:54378923..54378966,+!p1@HOXC10!1.04!10.07!HOXC10;;chr7:27213893..27213954,-!p1@HOXA10!1.04!10.07!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!1.04!10.07!HOXA11;;chr2:176969228..176969260,+!p1@HOXD11!1.04!9.85!HOXD11;;chr10:102505493..102505546,+!p2@PAX2!1.03!9.63!PAX2;;chr2:177053386..177053402,+!p1@HOXD1!1.02!9.40!HOXD1;;chr20:31350184..31350200,+!p1@DNMT3B!1.01!19.48!DNMT3B;;chr6:50789717..50789729,+!p4@TFAP2B!1.01!9.18!TFAP2B;;chr7:27192185..27192209,-!p1@HOXA3!1.01!9.18!HOXA3;;chr12:66218212..66218244,+!p5@HMGA2!1.00!13.21!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.00!11.19!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.00!10.30!BNC1;;chr12:54393880..54393962,+!p1@HOXC9!0.99!8.73!HOXC9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.98!8.51!HOXC5;;chr12:66218183..66218209,+!p4@HMGA2!0.95!15.67!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.43!TFAP2A;;chr17:46692457..46692484,-!p2@HOXB8!0.95!7.84!HOXB8;;chr20:42295745..42295765,+!p1@MYBL2!0.94!130.30!MYBL2;;chr20:42295713..42295738,+!p2@MYBL2!0.94!47.01!MYBL2;;chr12:3069037..3069119,+!p2@TEAD4!0.94!27.31!TEAD4;;chr20:50721803..50721857,-!p2@ZFP64!0.93!12.09!ZFP64;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.92!7.84!GLIS1;;chr2:176969097..176969109,+!p3@HOXD11!0.92!7.39!HOXD11;;chr11:65667884..65667895,-!p2@FOSL1!0.91!28.66!FOSL1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.91!7.16!TFCP2L1;;chr2:176969179..176969226,+!p2@HOXD11!0.90!6.94!HOXD11;;chr4:188916918..188916942,+!p1@ZFP42!0.90!6.94!ZFP42;;chr2:46524897..46524911,+!p2@EPAS1!0.89!19.92!EPAS1;;chr3:111314186..111314204,-!p1@ZBED2!0.89!6.72!ZBED2;;chr2:176972000..176972025,+!p4@HOXD11!0.87!6.49!HOXD11;;chr15:67357924..67357952,+!p2@SMAD3!0.86!43.88!SMAD3;;chr16:51185573..51185593,-!p3@SALL1!0.86!6.27!SALL1;;chr7:101917407..101917443,+!p3@CUX1!0.86!6.27!CUX1;;chr19:17356436..17356481,-!p3@NR2F6!0.85!10.75!NR2F6;;chr9:4300050..4300118,-!p1@GLIS3!0.84!41.19!GLIS3;;chr5:72744445..72744466,-!p2@FOXD1!0.83!9.85!FOXD1;;chr2:176971685..176971700,+!p6@HOXD11!0.83!5.82!HOXD11;;chr10:102505327..102505344,+!p1@PAX2!0.83!5.82!PAX2;;chr2:25475120..25475176,-!p2@DNMT3A!0.82!7.84!DNMT3A;;chr7:27219833..27219845,-!p7@HOXA10!0.82!5.60!HOXA10;;chr21:38071403..38071428,+!p2@SIM2!0.82!5.60!SIM2;;chr17:46622175..46622186,-!p12@HOXB2!0.82!5.60!HOXB2;;chr19:49865646..49865718,-!p1@TEAD2!0.81!50.37!TEAD2;;chr3:52001448..52001478,-!p2@PCBP4!0.80!80.82!PCBP4;;chr17:70117153..70117174,+!p1@SOX9!0.80!59.55!SOX9;;chr5:3595977..3595999,+!p1@IRX1!0.80!5.37!IRX1;;chr6:134210243..134210257,+!p1@TCF21!0.80!5.37!TCF21;;chr2:177001290..177001315,+!p1@HOXD3!0.80!5.37!HOXD3;;chr12:66218836..66218888,+!p1@HMGA2!0.79!52.61!HMGA2;;chr2:95963052..95963106,+!p1@KCNIP3!0.79!5.15!KCNIP3;;chr5:2751785..2751808,-!p2@IRX2!0.79!5.15!IRX2;;chr6:50786571..50786590,+!p2@TFAP2B!0.79!5.15!TFAP2B;;chr7:27196267..27196311,-!p1@HOXA7!0.79!5.15!HOXA7;;chr14:21994337..21994442,-!p1@SALL2!0.78!15.00!SALL2;;chr19:49864746..49864780,-!p2@TEAD2!0.78!7.16!TEAD2;;chr12:66218573..66218596,+!p7@HMGA2!0.77!7.61!HMGA2;;chr12:66218003..66218018,+!p9@HMGA2!0.77!6.04!HMGA2;;chr17:46667628..46667642,-!p2@HOXB3!0.77!4.93!HOXB3;;chr3:52001426..52001447,-!p3@PCBP4!0.76!14.33!PCBP4;;chr5:76383133..76383186,-!p2@ZBED3!0.76!10.30!ZBED3;;chr12:54380404..54380433,+!p3@HOXC10!0.76!4.70!HOXC10;;chr14:38064429..38064486,-!p1@FOXA1!0.76!4.70!FOXA1;;chr17:46675469..46675481,-!p4@HOXB6!0.76!4.70!HOXB6;;chr11:65667846..65667868,-!p1@FOSL1!0.75!134.32!FOSL1;;chr3:169381420..169381535,-!p1@MECOM!0.74!5.37!MECOM;;chr16:51185318..51185348,-!p2@SALL1!0.74!4.48!SALL1;;chr17:46675539..46675551,-!p7@HOXB6!0.74!4.48!HOXB6;;chr17:46703528..46703549,-!p5@HOXB9!0.74!4.48!HOXB9;;chr17:46687959..46688007,-!p2@HOXB7!0.73!6.27!HOXB7;;chr17:46675420..46675465,-!p3@HOXB6!0.72!4.93!HOXB6;;chr6:50786547..50786564,+!p3@TFAP2B!0.72!4.25!TFAP2B;;chr7:27153428..27153440,-!p3@HOXA3!0.72!4.25!HOXA3;;chr7:27219849..27219867,-!p6@HOXA10!0.72!4.25!HOXA10;;chr2:176973498..176973524,+!p1@HOXD10!0.72!4.25!HOXD10;;chr3:69811882..69811898,+!p6@MITF!0.72!4.25!MITF;;chr12:2986275..2986363,-!p1@FOXM1!0.71!47.01!FOXM1;;chr16:54964740..54964789,+!p1@IRX5!0.71!6.27!IRX5;;chr19:45260775..45260838,+!p5@BCL3!0.71!5.60!BCL3;;chr17:46692603..46692621,-!p6@HOXB8!0.70!4.03!HOXB8;;chr12:54379029..54379057,+!p2@HOXC10!0.70!4.03!HOXC10;;chr7:27179814..27179840,-!p4@HOXA3!0.70!4.03!HOXA3;;chr12:2986206..2986258,-!p2@FOXM1!0.69!26.86!FOXM1;;chr12:3068544..3068597,+!p1@TEAD4!0.69!26.42!TEAD4;;chr7:26191809..26191890,+!p1@NFE2L3!0.68!21.27!NFE2L3;;chr7:27183291..27183324,-!p1@HOXA5!0.68!3.81!HOXA5;;chr16:86600458..86600461,+!p3@FOXC2!0.68!3.81!FOXC2;;chr5:176738887..176738934,-!p1@MXD3!0.67!28.43!MXD3;;chr6:10412392..10412409,-!p4@TFAP2A!0.67!4.25!TFAP2A;;chr1:151032860..151032918,+!p1@MLLT11!0.66!49.48!MLLT11;;chr17:41623692..41623715,-!p1@ETV4!0.66!17.24!ETV4;;chr17:46622070..46622109,-!p1@HOXB2!0.66!8.73!HOXB2;;chr17:46675586..46675600,-!p6@HOXB6!0.66!3.58!HOXB6;;chr17:46703942..46703964,-!p4@HOXB9!0.66!3.58!HOXB9;;chr10:102505954..102505973,+!p3@PAX2!0.66!3.58!PAX2;;chr12:54394309..54394336,+!p2@HOXC9!0.66!3.58!HOXC9;;chr2:96012397..96012417,+!p3@KCNIP3!0.66!3.58!KCNIP3;;chr6:34204973..34204990,+!p4@HMGA1!0.65!53.95!HMGA1;;chr6:45390300..45390335,+!p4@RUNX2!0.65!5.82!RUNX2;;chr6:34205372..34205412,+!p5@HMGA1!0.64!19.92!HMGA1;;chr6:45390025..45390076,+!p2@RUNX2!0.64!8.95!RUNX2;;chr16:54320675..54320715,-!p1@IRX3!0.64!8.06!IRX3;;chr1:247171347..247171366,-!p2@ZNF695!0.64!6.72!ZNF695;;chr3:69811858..69811881,+!p5@MITF!0.64!3.36!MITF;;chr5:3595961..3595975,+!p3@IRX1!0.64!3.36!IRX1;;chr7:27169801..27169844,-!p2@HOXA4!0.64!3.36!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.64!3.36!HOXA5;;chr10:119303078..119303169,+!p2@EMX2!0.64!3.36!EMX2;;chr12:54447637..54447659,+!p4@HOXC4!0.64!3.36!HOXC4;;chr17:41622765..41622821,-!p2@ETV4!0.63!5.37!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.63!5.37!HOXB2;;chr16:29818160..29818188,+!p6@MAZ!0.62!17.46!MAZ;;chr11:65686732..65686756,+!p2@DRAP1!0.62!15.45!DRAP1;;chr9:117150254..117150271,-!p1@AKNA!0.62!9.85!AKNA;;chr9:4299979..4299996,-!p3@GLIS3!0.62!5.60!GLIS3;;chr6:10415484..10415508,-!p3@TFAP2A!0.62!3.13!TFAP2A;;chr17:41622731..41622764,-!p5@ETV4!0.62!3.13!ETV4;;chr17:46703212..46703238,-!p2@HOXB9!0.62!3.13!HOXB9;;chr21:38071462..38071474,+!p3@SIM2!0.62!3.13!SIM2;;chr12:54380036..54380091,+!p4@HOXC10!0.62!3.13!HOXC10;;chr12:66218378..66218401,+!p6@HMGA2!0.61!5.15!HMGA2;;chr17:46655704..46655718,-!p2@HOXB4!0.61!4.93!HOXB4;;chr12:66218443..66218461,+!p8@HMGA2!0.60!4.03!HMGA2;;chr6:21593973..21593988,+!p1@SOX4!0.59!127.16!SOX4;;chr6:31126291..31126399,+!p1@TCF19!0.59!33.13!TCF19;;chr9:130954041..130954121,-!p2@CIZ1!0.59!15.00!CIZ1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.59!9.18!ZC3H7B;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.59!2.91!POU3F3;;chr2:96012353..96012378,+!p4@KCNIP3!0.59!2.91!KCNIP3;;chr10:119302232..119302265,+!p1@EMX2!0.59!2.91!EMX2;;chr1:42384532..42384603,-!p2@HIVEP3!0.59!2.91!HIVEP3;;chr19:926001..926046,+!p1@ARID3A!0.58!11.42!ARID3A;;chr11:63684602..63684664,-!p1@RCOR2!0.58!6.27!RCOR2;;chr11:65686802..65686818,+!p6@DRAP1!0.58!5.37!DRAP1;;chr10:8096631..8096660,+!p1@GATA3!0.58!3.58!GATA3;;chr17:3571887..3571918,-!p2@TAX1BP3!0.57!37.16!TAX1BP3;;chr6:1312325..1312340,+!p1@FOXQ1!0.57!4.93!FOXQ1;;chr1:935496..935509,-!p3@HES4!0.57!4.48!HES4;;chr5:72744562..72744573,-!p3@FOXD1!0.57!3.58!FOXD1;;chr5:3595934..3595957,+!p2@IRX1!0.57!2.69!IRX1;;chr9:100615499..100615519,+!p1@FOXE1!0.57!2.69!FOXE1;;chr17:36105074..36105086,-!p2@HNF1B!0.57!2.69!HNF1B;;chr17:46667561..46667572,-!p4@HOXB3!0.57!2.69!HOXB3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.57!2.69!HOXC5;;chr2:5832493..5832507,+!p2@SOX11!0.57!2.69!SOX11;;chr12:124873357..124873401,-!p1@NCOR2!0.56!37.83!NCOR2;;chr16:4366053..43660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ZNF282!0.16!18.58!ZNF282;;chr7:137686824..137686865,-!p2@CREB3L2!0.16!15.90!CREB3L2;;chr16:29819403..29819442,+!p5@MAZ!0.16!10.07!MAZ;;chr1:27022164..27022220,+!p2@ARID1A!0.16!8.95!ARID1A;;chr14:89883509..89883587,-!p2@FOXN3!0.16!8.28!FOXN3;;chr19:35759473..35759521,+!p3@USF2!0.16!6.94!USF2;;chr12:53774567..53774658,+!p2@SP1!0.16!5.60!SP1;;chr17:56065729..56065781,-!p2@VEZF1!0.16!4.93!VEZF1;;chr3:44596679..44596726,+!p1@ZNF167!0.16!4.93!ZNF167;;chr19:46272462..46272562,-!p1@SIX5!0.16!4.70!SIX5;;chr12:27485823..27485868,+!p2@ARNTL2!0.16!4.48!ARNTL2;;chr5:76383017..76383068,-!p1@ZBED3!0.16!4.03!ZBED3;;chr2:27357446..27357475,-!p2@PREB!0.16!3.81!PREB;;chr17:38498594..38498661,+!p2@RARA!0.16!3.58!RARA;;chr19:56111639..56111668,+!p2@ZNF524!0.16!2.91!ZNF524;;chr1:8877735..8877760,-!p8@RERE!0.16!2.69!RERE;;chr8:23540441..23540466,-!p1@NKX3-1!0.16!1.79!NKX3-1;;chr10:114710218..114710229,+!p4@TCF7L2!0.16!1.79!TCF7L2;;chr18:3448455..3448480,+!p5@TGIF1!0.16!1.57!TGIF1;;chr3:71630690..71630750,-!p11@FOXP1!0.16!1.34!FOXP1;;chr22:42269885..42269899,+!p4@SREBF2!0.16!1.12!SREBF2;;chr19:18391708..18391737,-!p7@JUND!0.16!1.12!JUND;;chr12:53848549..53848582,+!p9@PCBP2!0.16!1.12!PCBP2;;chr19:53496806..53496848,-!p2@ZNF702P!0.16!1.12!ZNF702P;;chr1:27023752..27023799,+!p4@ARID1A!0.16!0.90!ARID1A;;chr20:49547674..49547685,-!p7@ADNP!0.16!0.90!ADNP;;chr10:3819310..3819325,-!p5@KLF6!0.16!0.90!KLF6;;chr12:49446120..49446135,-!p4@MLL2!0.16!0.90!MLL2;;chr2:10091815..10091864,+!p1@GRHL1!0.16!0.90!GRHL1;;chr2:46612334..46612349,+!p6@EPAS1!0.16!0.90!EPAS1;;chr16:30569801..30569845,-!p4@ZNF764!0.16!0.90!ZNF764;;chr16:73092723..73092738,-!p6@ZFHX3!0.16!0.90!ZFHX3;;chr18:3448390..3448411,+!p14@TGIF1!0.16!0.90!TGIF1;;chr6:21597283..21597312,+!p7@SOX4!0.16!0.90!SOX4;;chr6:20402070..20402082,+!p5@E2F3!0.16!0.67!E2F3;;chr8:146024397..146024416,+!p2@ZNF517!0.16!0.67!ZNF517;;chr1:935519..935532,-!p4@HES4!0.16!0.67!HES4;;chr14:35873136..35873155,-!p9@NFKBIA!0.16!0.67!NFKBIA;;chr17:41623075..41623101,-!p9@ETV4!0.16!0.67!ETV4;;chr17:41623259..41623278,-!p7@ETV4!0.16!0.67!ETV4;;chr15:31684663..31684717,+!p10@KLF13!0.16!0.45!KLF13;;chr15:57211318..57211355,+!p10@TCF12!0.16!0.45!TCF12;;chr15:67459116..67459123,+!p23@SMAD3!0.16!0.45!SMAD3;;chr15:96869206..96869220,+!p21@NR2F2!0.16!0.45!NR2F2;;chr16:51185544..51185555,-!p7@SALL1!0.16!0.45!SALL1;;chr16:52580953..52580992,-!p2@TOX3!0.16!0.45!TOX3;;chr16:54320127..54320148,-!p6@IRX3!0.16!0.45!IRX3;;chr16:67881534..67881549,-!p4@CENPT!0.16!0.45!CENPT;;chr17:40477163..40477183,-!p7@STAT3!0.16!0.45!STAT3;;chr17:40540591..40540600,-!p3@STAT3!0.16!0.45!STAT3;;chr17:41622982..41623001,-!p11@ETV4!0.16!0.45!ETV4;;chr17:46655566..46655577,-!p5@HOXB4!0.16!0.45!HOXB4;;chr17:46655578..46655589,-!p4@HOXB4!0.16!0.45!HOXB4;;chr17:46655672..46655697,-!p3@HOXB4!0.16!0.45!HOXB4;;chr17:46671154..46671167,-!p4@HOXB5!0.16!0.45!HOXB5;;chr17:46691990..46692004,-!p11@HOXB8!0.16!0.45!HOXB8;;chr17:46692582..46692589,-!p14@HOXB8!0.16!0.45!HOXB8;;chr17:46703491..46703497,-!p12@HOXB9!0.16!0.45!HOXB9;;chr17:56565257..56565283,-!p2@HSF5!0.16!0.45!HSF5;;chr17:70121709..70121718,+!p2@SOX9!0.16!0.45!SOX9;;chr17:7382810..7382822,-!p12@ZBTB4!0.16!0.45!ZBTB4;;chr17:7492504..7492520,-!p3@SOX15!0.16!0.45!SOX15;;chr18:74207227..74207238,-!p5@ZNF516!0.16!0.45!ZNF516;;chr19:13213399..13213414,-!p6@LYL1!0.16!0.45!LYL1;;chr19:13213954..13214021,-!p4@LYL1!0.16!0.45!LYL1;;chr19:1622138..1622153,-!p7@TCF3!0.16!0.45!TCF3;;chr19:22034784..22034801,-!p4@ZNF43!0.16!0.45!ZNF43;;chr19:22605136..22605154,-!p1@ZNF98!0.16!0.45!ZNF98;;
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.03!106.79!PAX8;;chr17:46703687..46703740,-!p1@HOXB9!2.02!103.43!HOXB9;;chr17:36105042..36105060,-!p1@HNF1B!1.96!91.12!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!1.67!45.45!ELF3;;chr6:50786591..50786614,+!p1@TFAP2B!1.66!45.22!TFAP2B;;chr17:46682321..46682362,-!p1@HOXB6!1.65!44.10!HOXB6;;chr7:27205136..27205164,-!p1@HOXA9!1.65!43.43!HOXA9;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.70!ELF3;;chr17:35294075..35294102,+!p1@ENST00000559335!1.54!33.58!LHX1;;chr6:34204921..34204939,+!p3@HMGA1!1.46!803.71!HMGA1;;chr17:7493405..7493419,-!p1@SOX15!1.46!27.76!SOX15;;chr7:27205106..27205134,-!p2@HOXA9!1.46!27.54!HOXA9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.37!22.39!POU3F3;;chr17:46622205..46622218,-!p3@HOXB2!1.32!22.84!HOXB2;;chr17:46703826..46703845,-!p3@HOXB9!1.31!19.48!HOXB9;;chr7:27196217..27196246,-!p2@HOXA7!1.29!18.36!HOXA7;;chr17:46667594..46667619,-!p1@HOXB3!1.28!17.91!HOXB3;;chr7:27153454..27153469,-!p2@HOXA3!1.26!17.24!HOXA3;;chr17:46675558..46675577,-!p2@HOXB6!1.25!16.79!HOXB6;;chr16:86600426..86600441,+!p1@FOXC2!1.24!40.52!FOXC2;;chr16:51185172..51185197,-!p1@SALL1!1.22!15.67!SALL1;;chr6:34204672..34204692,+!p1@HMGA1!1.19!1583.69!HMGA1;;chr2:5832508..5832524,+!p1@SOX11!1.17!13.88!SOX11;;chr5:2751762..2751784,-!p1@IRX2!1.16!13.43!IRX2;;chr12:66218255..66218304,+!p3@HMGA2!1.15!35.15!HMGA2;;chr17:46690839..46690884,-!p1@HOXB8!1.14!12.76!HOXB8;;chr17:46692624..46692659,-!p3@HOXB8!1.13!12.54!HOXB8;;chr2:176994408..176994492,+!p1@HOXD8!1.13!12.54!HOXD8;;chr21:38071430..38071456,+!p1@SIM2!1.12!12.31!SIM2;;chr12:66218598..66218645,+!p2@HMGA2!1.10!53.95!HMGA2;;chr7:27224842..27224872,-!p1@HOXA11!1.09!11.19!HOXA11;;chr1:209979467..209979494,-!p1@IRF6!1.08!12.54!IRF6;;chr17:46688334..46688385,-!p1@HOXB7!1.07!15.67!HOXB7;;chr7:27170359..27170381,-!p1@HOXA4!1.07!10.75!HOXA4;;chr5:72744594..72744609,-!p1@FOXD1!1.06!48.36!FOXD1;;chr17:7492684..7492778,-!p2@SOX15!1.06!22.39!SOX15;;chr11:61520075..61520136,+!p1@C11orf9!1.05!21.94!C11orf9;;chr17:46622229..46622257,-!p6@HOXB2!1.05!11.87!HOXB2;;chr17:46622440..46622477,-!p5@HOXB2!1.05!11.42!HOXB2;;chr2:177016336..177016350,+!p1@HOXD4!1.05!10.30!HOXD4;;chr12:54378923..54378966,+!p1@HOXC10!1.04!10.07!HOXC10;;chr7:27213893..27213954,-!p1@HOXA10!1.04!10.07!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!1.04!10.07!HOXA11;;chr2:176969228..176969260,+!p1@HOXD11!1.04!9.85!HOXD11;;chr10:102505493..102505546,+!p2@PAX2!1.03!9.63!PAX2;;chr2:177053386..177053402,+!p1@HOXD1!1.02!9.40!HOXD1;;chr20:31350184..31350200,+!p1@DNMT3B!1.01!19.48!DNMT3B;;chr6:50789717..50789729,+!p4@TFAP2B!1.01!9.18!TFAP2B;;chr7:27192185..27192209,-!p1@HOXA3!1.01!9.18!HOXA3;;chr12:66218212..66218244,+!p5@HMGA2!1.00!13.21!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.00!11.19!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.00!10.30!BNC1;;chr12:54393880..54393962,+!p1@HOXC9!0.99!8.73!HOXC9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.98!8.51!HOXC5;;chr12:66218183..66218209,+!p4@HMGA2!0.95!15.67!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.43!TFAP2A;;chr17:46692457..46692484,-!p2@HOXB8!0.95!7.84!HOXB8;;chr20:42295745..42295765,+!p1@MYBL2!0.94!130.30!MYBL2;;chr20:42295713..42295738,+!p2@MYBL2!0.94!47.01!MYBL2;;chr12:3069037..3069119,+!p2@TEAD4!0.94!27.31!TEAD4;;chr20:50721803..50721857,-!p2@ZFP64!0.93!12.09!ZFP64;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.92!7.84!GLIS1;;chr2:176969097..176969109,+!p3@HOXD11!0.92!7.39!HOXD11;;chr11:65667884..65667895,-!p2@FOSL1!0.91!28.66!FOSL1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.91!7.16!TFCP2L1;;chr2:176969179..176969226,+!p2@HOXD11!0.90!6.94!HOXD11;;chr4:188916918..188916942,+!p1@ZFP42!0.90!6.94!ZFP42;;chr2:46524897..46524911,+!p2@EPAS1!0.89!19.92!EPAS1;;chr3:111314186..111314204,-!p1@ZBED2!0.89!6.72!ZBED2;;chr2:176972000..176972025,+!p4@HOXD11!0.87!6.49!HOXD11;;chr15:67357924..67357952,+!p2@SMAD3!0.86!43.88!SMAD3;;chr16:51185573..51185593,-!p3@SALL1!0.86!6.27!SALL1;;chr7:101917407..101917443,+!p3@CUX1!0.86!6.27!CUX1;;chr19:17356436..17356481,-!p3@NR2F6!0.85!10.75!NR2F6;;chr9:4300050..4300118,-!p1@GLIS3!0.84!41.19!GLIS3;;chr5:72744445..72744466,-!p2@FOXD1!0.83!9.85!FOXD1;;chr2:176971685..176971700,+!p6@HOXD11!0.83!5.82!HOXD11;;chr10:102505327..102505344,+!p1@PAX2!0.83!5.82!PAX2;;chr2:25475120..25475176,-!p2@DNMT3A!0.82!7.84!DNMT3A;;chr7:27219833..27219845,-!p7@HOXA10!0.82!5.60!HOXA10;;chr21:38071403..38071428,+!p2@SIM2!0.82!5.60!SIM2;;chr17:46622175..46622186,-!p12@HOXB2!0.82!5.60!HOXB2;;chr19:49865646..49865718,-!p1@TEAD2!0.81!50.37!TEAD2;;chr3:52001448..52001478,-!p2@PCBP4!0.80!80.82!PCBP4;;chr17:70117153..70117174,+!p1@SOX9!0.80!59.55!SOX9;;chr5:3595977..3595999,+!p1@IRX1!0.80!5.37!IRX1;;chr6:134210243..134210257,+!p1@TCF21!0.80!5.37!TCF21;;chr2:177001290..177001315,+!p1@HOXD3!0.80!5.37!HOXD3;;chr12:66218836..66218888,+!p1@HMGA2!0.79!52.61!HMGA2;;chr2:95963052..95963106,+!p1@KCNIP3!0.79!5.15!KCNIP3;;chr5:2751785..2751808,-!p2@IRX2!0.79!5.15!IRX2;;chr6:50786571..507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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000615;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
|ffid_belonging_in_development=CL:0000222
|ffid_belonging_in_development=CL:0000222
|fonse_cell_line=
|fonse_cell_line=
Line 39: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor3.CNhs12120.11676-122H2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor3.CNhs12120.11676-122H2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor3.CNhs12120.11676-122H2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor3.CNhs12120.11676-122H2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor3.CNhs12120.11676-122H2.hg38.nobarcode.ctss.bed.gz
|id=FF:11676-122H2
|id=FF:11676-122H2
|is_a=EFO:0002091;;FF:0000155
|is_a=EFO:0002091;;FF:0000155
|is_obsolete=
|is_obsolete=
|library_ids=CNhs12120
|library_id=CNhs12120
|library_id_phase_based=2:CNhs12120
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11676
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GATCAG.11676
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11676
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GATCAG.11676
|name=Renal Proximal Tubular Epithelial Cell, donor3
|name=Renal Proximal Tubular Epithelial Cell, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 48: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12120,LSID839,release011,COMPLETED
|profile_hcage=CNhs12120,LSID839,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10006,,,
|profile_srnaseq=SRhi10006,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 64: Line 82:
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|sample_category=primary cells
Line 87: Line 106:
|top_motifs=XCPE1{core}:1.94685897151;HNF1A:1.34566068545;TFAP2{A,C}:1.23175794841;POU2F1..3:1.23028095355;NKX2-3_NKX2-5:1.16638715468;ZNF148:1.12500743321;RXRA_VDR{dimer}:1.07036770156;EBF1:1.06407230468;ZIC1..3:1.06118154671;SNAI1..3:1.02515153865;ESRRA:1.02349768143;ZEB1:1.02190827135;MYOD1:0.946147464753;GTF2A1,2:0.930551282122;PBX1:0.89555763048;RXR{A,B,G}:0.870454923155;TFCP2:0.836934065906;ZNF423:0.812381851815;HOX{A5,B5}:0.782375449367;SP1:0.782175719855;TFAP2B:0.767404302183;POU3F1..4:0.747780890474;NR6A1:0.746022241729;TEAD1:0.714669434388;GZF1:0.674055649979;HIC1:0.623999554021;TP53:0.590870061338;NR5A1,2:0.583732466901;TFDP1:0.579673341137;NR1H4:0.575809957813;MTF1:0.559162823226;LEF1_TCF7_TCF7L1,2:0.556621718192;TBX4,5:0.554480620815;ESR1:0.552368797398;SOX{8,9,10}:0.547697993087;GFI1:0.526557189078;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.523056923883;ADNP_IRX_SIX_ZHX:0.511227230255;LHX3,4:0.504168297607;E2F1..5:0.486575773388;LMO2:0.465444286605;GLI1..3:0.457670755735;RREB1:0.435128994494;NFY{A,B,C}:0.42135453801;SPZ1:0.397386390495;ONECUT1,2:0.383507035772;POU5F1:0.365475547249;PPARG:0.342324058976;bHLH_family:0.337111519082;GFI1B:0.306564149398;PITX1..3:0.287445262705;BACH2:0.250761683471;FOXQ1:0.197976040455;ZBTB6:0.192343126169;FOS_FOS{B,L1}_JUN{B,D}:0.188951727431;HNF4A_NR2F1,2:0.187155122819;TLX1..3_NFIC{dimer}:0.185291792635;VSX1,2:0.180585415258;IKZF1:0.165117934349;STAT5{A,B}:0.161256890058;SOX2:0.157588275924;TBP:0.157453775207;NR3C1:0.157286829106;SRF:0.150877208369;NFE2L1:0.150616372123;EP300:0.149047743238;FOSL2:0.115535146984;PAX5:0.112899703776;HAND1,2:0.112838474199;UFEwm:0.0985238230099;PRRX1,2:0.0935373638174;PAX8:0.0878589437149;TEF:0.0863823755492;JUN:0.0682588262571;MAZ:0.0668992954069;NFE2:0.0618964039406;NFE2L2:0.0606742679735;HOX{A6,A7,B6,B7}:0.0364551311045;CRX:0.0314550009977;HOXA9_MEIS1:-0.00604588082358;TFAP4:-0.0329702382672;PATZ1:-0.0363763021672;ZNF143:-0.0398077139626;POU1F1:-0.0507085351476;GTF2I:-0.0612026681228;SOX17:-0.0729319787946;MED-1{core}:-0.0731418085678;NFKB1_REL_RELA:-0.0802812839396;HES1:-0.0923309436392;STAT2,4,6:-0.115040950982;KLF4:-0.132072560087;AR:-0.132898433533;REST:-0.13833377921;MTE{core}:-0.146103898918;ALX1:-0.147074819649;NANOG:-0.150679070993;ALX4:-0.154858142702;TOPORS:-0.161733372915;CUX2:-0.206130974496;GCM1,2:-0.210444670687;MYB:-0.212668106084;EGR1..3:-0.234913849713;EN1,2:-0.247329415469;PAX6:-0.259082655906;OCT4_SOX2{dimer}:-0.263689274151;MEF2{A,B,C,D}:-0.272574291282;ZFP161:-0.273956752884;RORA:-0.308528007422;RUNX1..3:-0.339340249224;DBP:-0.3606276731;FOXM1:-0.366071741535;HLF:-0.374529903417;ETS1,2:-0.383109070434;ATF2:-0.386783084424;GATA6:-0.401837321236;MZF1:-0.40487879057;NKX3-1:-0.467810672359;NHLH1,2:-0.481735868203;MYBL2:-0.502381397297;AIRE:-0.505216165443;FOXL1:-0.508360813855;TAL1_TCF{3,4,12}:-0.513517626072;CDC5L:-0.523707001316;SPIB:-0.530138691954;RFX1:-0.530692880161;POU6F1:-0.542899182172;YY1:-0.549423505253;CEBPA,B_DDIT3:-0.549593374615;BREu{core}:-0.561481763451;NKX3-2:-0.576443124114;ELK1,4_GABP{A,B1}:-0.577904523879;SOX5:-0.598703233908;T:-0.60867742742;ATF6:-0.612762487742;SPI1:-0.640004657565;NRF1:-0.642579683395;ZNF384:-0.643877267089;FOX{F1,F2,J1}:-0.656611138048;SMAD1..7,9:-0.672041892295;FOXD3:-0.681983817698;HOX{A4,D4}:-0.70071899155;PAX1,9:-0.700743254307;HBP1_HMGB_SSRP1_UBTF:-0.714227888463;NKX2-2,8:-0.726520916276;CDX1,2,4:-0.728717703999;HMX1:-0.733949113025;ARID5B:-0.751261263996;ZNF238:-0.755135033341;FOXP1:-0.767825291115;PRDM1:-0.768450166062;XBP1:-0.772289032237;NFIL3:-0.797393793286;HSF1,2:-0.804908154326;ATF4:-0.851566834593;NKX6-1,2:-0.899555473937;TLX2:-0.908397599733;ATF5_CREB3:-0.910732590239;PAX3,7:-0.918610972296;IRF7:-0.91984191492;RFX2..5_RFXANK_RFXAP:-0.920371695429;DMAP1_NCOR{1,2}_SMARC:-0.93970665895;FOX{D1,D2}:-0.96881090477;MYFfamily:-0.99190286865;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01506514926;IRF1,2:-1.01561280978;PDX1:-1.0342421575;SREBF1,2:-1.05082337004;PAX2:-1.06682232624;NFATC1..3:-1.08999938174;NANOG{mouse}:-1.09235737045;NFIX:-1.10014753104;FOX{I1,J2}:-1.1060706213;NKX2-1,4:-1.12234657826;IKZF2:-1.13675326178;STAT1,3:-1.13794949027;FOXA2:-1.14608689852;FOXP3:-1.15588051564;CREB1:-1.16435608557;ELF1,2,4:-1.16539677297;EVI1:-1.20014981029;TGIF1:-1.26504187471;FOXO1,3,4:-1.28474389078;AHR_ARNT_ARNT2:-1.28583759939;PAX4:-1.37168208664;FOXN1:-1.4736402266;GATA4:-1.47487395033;ZBTB16:-1.53405865989;HMGA1,2:-1.54065770165;BPTF:-1.57191945648;MAFB:-1.58235738788;HIF1A:-1.78387977265;RBPJ:-1.81394557343
|top_motifs=XCPE1{core}:1.94685897151;HNF1A:1.34566068545;TFAP2{A,C}:1.23175794841;POU2F1..3:1.23028095355;NKX2-3_NKX2-5:1.16638715468;ZNF148:1.12500743321;RXRA_VDR{dimer}:1.07036770156;EBF1:1.06407230468;ZIC1..3:1.06118154671;SNAI1..3:1.02515153865;ESRRA:1.02349768143;ZEB1:1.02190827135;MYOD1:0.946147464753;GTF2A1,2:0.930551282122;PBX1:0.89555763048;RXR{A,B,G}:0.870454923155;TFCP2:0.836934065906;ZNF423:0.812381851815;HOX{A5,B5}:0.782375449367;SP1:0.782175719855;TFAP2B:0.767404302183;POU3F1..4:0.747780890474;NR6A1:0.746022241729;TEAD1:0.714669434388;GZF1:0.674055649979;HIC1:0.623999554021;TP53:0.590870061338;NR5A1,2:0.583732466901;TFDP1:0.579673341137;NR1H4:0.575809957813;MTF1:0.559162823226;LEF1_TCF7_TCF7L1,2:0.556621718192;TBX4,5:0.554480620815;ESR1:0.552368797398;SOX{8,9,10}:0.547697993087;GFI1:0.526557189078;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.523056923883;ADNP_IRX_SIX_ZHX:0.511227230255;LHX3,4:0.504168297607;E2F1..5:0.486575773388;LMO2:0.465444286605;GLI1..3:0.457670755735;RREB1:0.435128994494;NFY{A,B,C}:0.42135453801;SPZ1:0.397386390495;ONECUT1,2:0.383507035772;POU5F1:0.365475547249;PPARG:0.342324058976;bHLH_family:0.337111519082;GFI1B:0.306564149398;PITX1..3:0.287445262705;BACH2:0.250761683471;FOXQ1:0.197976040455;ZBTB6:0.192343126169;FOS_FOS{B,L1}_JUN{B,D}:0.188951727431;HNF4A_NR2F1,2:0.187155122819;TLX1..3_NFIC{dimer}:0.185291792635;VSX1,2:0.180585415258;IKZF1:0.165117934349;STAT5{A,B}:0.161256890058;SOX2:0.157588275924;TBP:0.157453775207;NR3C1:0.157286829106;SRF:0.150877208369;NFE2L1:0.150616372123;EP300:0.149047743238;FOSL2:0.115535146984;PAX5:0.112899703776;HAND1,2:0.112838474199;UFEwm:0.0985238230099;PRRX1,2:0.0935373638174;PAX8:0.0878589437149;TEF:0.0863823755492;JUN:0.0682588262571;MAZ:0.0668992954069;NFE2:0.0618964039406;NFE2L2:0.0606742679735;HOX{A6,A7,B6,B7}:0.0364551311045;CRX:0.0314550009977;HOXA9_MEIS1:-0.00604588082358;TFAP4:-0.0329702382672;PATZ1:-0.0363763021672;ZNF143:-0.0398077139626;POU1F1:-0.0507085351476;GTF2I:-0.0612026681228;SOX17:-0.0729319787946;MED-1{core}:-0.0731418085678;NFKB1_REL_RELA:-0.0802812839396;HES1:-0.0923309436392;STAT2,4,6:-0.115040950982;KLF4:-0.132072560087;AR:-0.132898433533;REST:-0.13833377921;MTE{core}:-0.146103898918;ALX1:-0.147074819649;NANOG:-0.150679070993;ALX4:-0.154858142702;TOPORS:-0.161733372915;CUX2:-0.206130974496;GCM1,2:-0.210444670687;MYB:-0.212668106084;EGR1..3:-0.234913849713;EN1,2:-0.247329415469;PAX6:-0.259082655906;OCT4_SOX2{dimer}:-0.263689274151;MEF2{A,B,C,D}:-0.272574291282;ZFP161:-0.273956752884;RORA:-0.308528007422;RUNX1..3:-0.339340249224;DBP:-0.3606276731;FOXM1:-0.366071741535;HLF:-0.374529903417;ETS1,2:-0.383109070434;ATF2:-0.386783084424;GATA6:-0.401837321236;MZF1:-0.40487879057;NKX3-1:-0.467810672359;NHLH1,2:-0.481735868203;MYBL2:-0.502381397297;AIRE:-0.505216165443;FOXL1:-0.508360813855;TAL1_TCF{3,4,12}:-0.513517626072;CDC5L:-0.523707001316;SPIB:-0.530138691954;RFX1:-0.530692880161;POU6F1:-0.542899182172;YY1:-0.549423505253;CEBPA,B_DDIT3:-0.549593374615;BREu{core}:-0.561481763451;NKX3-2:-0.576443124114;ELK1,4_GABP{A,B1}:-0.577904523879;SOX5:-0.598703233908;T:-0.60867742742;ATF6:-0.612762487742;SPI1:-0.640004657565;NRF1:-0.642579683395;ZNF384:-0.643877267089;FOX{F1,F2,J1}:-0.656611138048;SMAD1..7,9:-0.672041892295;FOXD3:-0.681983817698;HOX{A4,D4}:-0.70071899155;PAX1,9:-0.700743254307;HBP1_HMGB_SSRP1_UBTF:-0.714227888463;NKX2-2,8:-0.726520916276;CDX1,2,4:-0.728717703999;HMX1:-0.733949113025;ARID5B:-0.751261263996;ZNF238:-0.755135033341;FOXP1:-0.767825291115;PRDM1:-0.768450166062;XBP1:-0.772289032237;NFIL3:-0.797393793286;HSF1,2:-0.804908154326;ATF4:-0.851566834593;NKX6-1,2:-0.899555473937;TLX2:-0.908397599733;ATF5_CREB3:-0.910732590239;PAX3,7:-0.918610972296;IRF7:-0.91984191492;RFX2..5_RFXANK_RFXAP:-0.920371695429;DMAP1_NCOR{1,2}_SMARC:-0.93970665895;FOX{D1,D2}:-0.96881090477;MYFfamily:-0.99190286865;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01506514926;IRF1,2:-1.01561280978;PDX1:-1.0342421575;SREBF1,2:-1.05082337004;PAX2:-1.06682232624;NFATC1..3:-1.08999938174;NANOG{mouse}:-1.09235737045;NFIX:-1.10014753104;FOX{I1,J2}:-1.1060706213;NKX2-1,4:-1.12234657826;IKZF2:-1.13675326178;STAT1,3:-1.13794949027;FOXA2:-1.14608689852;FOXP3:-1.15588051564;CREB1:-1.16435608557;ELF1,2,4:-1.16539677297;EVI1:-1.20014981029;TGIF1:-1.26504187471;FOXO1,3,4:-1.28474389078;AHR_ARNT_ARNT2:-1.28583759939;PAX4:-1.37168208664;FOXN1:-1.4736402266;GATA4:-1.47487395033;ZBTB16:-1.53405865989;HMGA1,2:-1.54065770165;BPTF:-1.57191945648;MAFB:-1.58235738788;HIF1A:-1.78387977265;RBPJ:-1.81394557343
|xref=
|xref=
}} {{DRAAccessionNumbers
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11676-122H2;search_select_hide=table117:FF:11676-122H2
|DRA_sample_Accession=CAGE@DRS008331
|accession_numbers=DRX008439;DRR009311;DRZ000736;DRZ002121;CAGE
|library_id=CNhs12120
}}
}}

Latest revision as of 18:14, 4 June 2020

Name:Renal Proximal Tubular Epithelial Cell, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12120
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexNA
ageNA
cell typeepithelial cell of kidney, proximal tubule
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC4105
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005901
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12120 CAGE DRX008439 DRR009311
Accession ID Hg19

Library idBAMCTSS
CNhs12120 DRZ000736 DRZ002121
Accession ID Hg38

Library idBAMCTSS
CNhs12120 DRZ012086 DRZ013471
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005901
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.GATCAG sRNA-Seq DRX037075 DRR041441
Accession ID Hg19

Library idBAMCTSS
SRhi10006.GATCAG DRZ007083


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.107
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0954
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0554
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.418
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0208
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0667
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.175
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.265
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.326
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.559
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.584
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0382
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.161
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.161
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.161
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12120

Jaspar motifP-value
MA0002.20.844
MA0003.10.384
MA0004.10.663
MA0006.10.0736
MA0007.10.0295
MA0009.10.651
MA0014.10.871
MA0017.10.112
MA0018.20.272
MA0019.10.524
MA0024.10.155
MA0025.10.89
MA0027.10.23
MA0028.10.0333
MA0029.10.484
MA0030.10.19
MA0031.10.0158
MA0035.20.173
MA0038.10.0193
MA0039.20.0606
MA0040.10.816
MA0041.10.308
MA0042.10.999
MA0043.10.0198
MA0046.15.87274e-24
MA0047.20.13
MA0048.10.417
MA0050.15.06451e-6
MA0051.10.00693
MA0052.10.555
MA0055.10.0217
MA0057.10.257
MA0058.10.993
MA0059.10.682
MA0060.16.89533e-7
MA0061.10.987
MA0062.21.20706e-4
MA0065.20.0499
MA0066.10.369
MA0067.10.00761
MA0068.10.801
MA0069.10.287
MA0070.10.103
MA0071.10.26
MA0072.10.571
MA0073.10.975
MA0074.10.27
MA0076.10.00106
MA0077.10.0424
MA0078.10.599
MA0079.20.648
MA0080.22.40255e-6
MA0081.10.00212
MA0083.10.0657
MA0084.10.0313
MA0087.10.348
MA0088.10.887
MA0090.10.00483
MA0091.10.724
MA0092.10.987
MA0093.10.764
MA0099.26.96642e-6
MA0100.10.139
MA0101.10.95
MA0102.25.57884e-4
MA0103.19.53262e-6
MA0104.20.46
MA0105.10.766
MA0106.10.02
MA0107.10.927
MA0108.23.69271e-4
MA0111.10.402
MA0112.20.245
MA0113.10.743
MA0114.10.185
MA0115.10.536
MA0116.10.779
MA0117.10.0796
MA0119.10.992
MA0122.10.445
MA0124.10.502
MA0125.10.655
MA0131.10.0826
MA0135.10.32
MA0136.11.90112e-7
MA0137.20.0285
MA0138.20.907
MA0139.10.901
MA0140.10.828
MA0141.10.095
MA0142.10.522
MA0143.10.495
MA0144.10.648
MA0145.10.128
MA0146.10.086
MA0147.10.667
MA0148.10.754
MA0149.10.247
MA0150.10.553
MA0152.10.116
MA0153.12.46969e-10
MA0154.10.578
MA0155.10.0753
MA0156.11.87247e-4
MA0157.10.0506
MA0159.10.481
MA0160.10.237
MA0162.10.0653
MA0163.10.479
MA0164.10.904
MA0258.10.301
MA0259.10.131



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12120

Novel motifP-value
10.52
100.155
1000.0793
1010.0395
1020.379
1030.325
1040.547
1050.17
1060.0432
1079.93439e-4
1080.338
1090.407
110.48
1100.344
1110.786
1120.301
1130.187
1140.108
1150.334
1160.268
1170.801
1180.517
1190.275
120.873
1200.476
1210.785
1220.407
1230.291
1240.222
1250.294
1260.561
1270.333
1280.298
1290.381
130.25
1300.155
1310.0717
1320.0661
1330.125
1340.623
1350.81
1360.0768
1370.0311
1380.0536
1390.127
140.621
1400.625
1410.345
1420.704
1430.547
1440.793
1450.229
1460.0492
1470.657
1480.126
1490.915
150.544
1500.13
1510.565
1520.0527
1530.095
1540.306
1550.686
1560.463
1570.627
1580.201
1590.756
160.445
1600.0473
1610.58
1620.0393
1630.954
1640.224
1650.0798
1660.97
1670.368
1680.144
1690.203
170.256
180.799
190.699
20.23
200.982
210.698
220.262
230.718
240.869
250.571
260.131
270.306
280.316
290.866
30.479
300.118
310.497
320.927
330.122
340.262
350.172
360.826
370.378
380.546
390.343
40.442
400.00277
410.288
420.485
430.918
440.883
450.154
460.757
470.658
480.34
490.48
50.302
500.213
510.358
520.282
530.494
540.52
550.766
560.189
570.945
580.301
590.0471
60.373
600.47
610.438
620.209
630.303
640.414
650.11
660.117
670.461
680.88
690.0286
70.968
700.461
710.491
720.276
730.0456
740.0953
750.754
760.117
770.0154
780.428
790.81
80.225
800.0996
810.117
820.269
830.876
840.6
850.449
860.54
870.0541
880.621
890.589
90.718
900.0293
910.981
920.437
930.203
940.365
950.361
960.313
970.704
980.705
992.6779e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12120


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000255 (eukaryotic cell)
0000239 (brush border epithelial cell)
1000615 (kidney cortex tubule cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
0002306 (epithelial cell of proximal tubule)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0006853 (renal cortex tubule)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0007685 (region of nephron tubule)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0004134 (proximal tubule)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000155 (human renal proximal tubular epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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