FF:11678-122H4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005666 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008429;DRR009301;DRZ000726;DRZ002111;DRZ012076;DRZ013461 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:1000449,CL:1000507,CL:1000494 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:36105042..36105060,-!p1@HNF1B!1.95!87.92!HNF1B;;chr17:46703687..46703740,-!p1@HOXB9!1.84!68.29!HOXB9;;chr2:114036488..114036504,-!p1@PAX8!1.73!52.14!PAX8;;chr1:201979703..201979721,+!p2@ELF3!1.71!49.71!ELF3;;chr12:66218598..66218645,+!p2@HMGA2!1.66!197.70!HMGA2;;chr17:35294075..35294102,+!p1@ENST00000559335!1.64!42.43!LHX1;;chr17:46682321..46682362,-!p1@HOXB6!1.63!41.27!HOXB6;;chr12:66218255..66218304,+!p3@HMGA2!1.58!96.05!HMGA2;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.83!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.54!37.37!IRF6;;chr17:46703826..46703845,-!p3@HOXB9!1.53!33.25!HOXB9;;chr7:27205136..27205164,-!p1@HOXA9!1.45!27.44!HOXA9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.44!26.60!POU3F3;;chr12:66218183..66218209,+!p4@HMGA2!1.33!38.63!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!1.29!18.37!HOXA9;;chr7:27153454..27153469,-!p2@HOXA3!1.28!17.84!HOXA3;;chr16:86600426..86600441,+!p1@FOXC2!1.25!41.38!FOXC2;;chr12:66218212..66218244,+!p5@HMGA2!1.25!24.28!HMGA2;;chr11:34642612..34642646,+!p1@EHF!1.21!15.30!EHF;;chr7:27192185..27192209,-!p1@HOXA3!1.20!14.67!HOXA3;;chr3:141043020..141043049,+!p17@ZBTB38!1.19!14.36!ZBTB38;;chr17:46622205..46622218,-!p3@HOXB2!1.18!16.36!HOXB2;;chr3:69811858..69811881,+!p5@MITF!1.18!14.14!MITF;;chr12:66218836..66218888,+!p1@HMGA2!1.16!123.92!HMGA2;;chr3:69811882..69811898,+!p6@MITF!1.16!13.30!MITF;;chr7:27183291..27183324,-!p1@HOXA5!1.14!12.88!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!1.12!12.03!HOXA5;;chr7:26191809..26191890,+!p1@NFE2L3!1.10!57.42!NFE2L3;;chr12:66218443..66218461,+!p8@HMGA2!1.10!14.88!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!1.09!17.52!HMGA2;;chr6:50786591..50786614,+!p1@TFAP2B!1.08!11.08!TFAP2B;;chr12:54378923..54378966,+!p1@HOXC10!1.06!10.56!HOXC10;;chr2:177053386..177053402,+!p1@HOXD1!1.06!10.56!HOXD1;;chr7:27224795..27224840,-!p2@HOXA11!1.06!10.45!HOXA11;;chr12:66218003..66218018,+!p9@HMGA2!1.05!12.35!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!1.04!14.99!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!1.04!14.57!HOXB7;;chr2:5832508..5832524,+!p1@SOX11!1.03!9.82!SOX11;;chr2:176994408..176994492,+!p1@HOXD8!1.03!9.61!HOXD8;;chr17:46622229..46622257,-!p6@HOXB2!1.02!11.08!HOXB2;;chr7:27224842..27224872,-!p1@HOXA11!1.01!9.29!HOXA11;;chr12:54393880..54393962,+!p1@HOXC9!1.01!9.18!HOXC9;;chr6:10412600..10412637,-!p1@TFAP2A!1.00!15.30!TFAP2A;;chr7:27196217..27196246,-!p2@HOXA7!1.00!9.08!HOXA7;;chr6:34204921..34204939,+!p3@HMGA1!0.99!268.42!HMGA1;;chr3:141043050..141043063,+!p22@ZBTB38!0.99!8.76!ZBTB38;;chr17:46622440..46622477,-!p5@HOXB2!0.97!9.39!HOXB2;;chr20:6748325..6748352,+!p1@BMP2!0.96!11.82!BMP2;;chr6:21597765..21597779,+!p2@SOX4!0.95!66.60!SOX4;;chr6:10415276..10415341,-!p2@TFAP2A!0.94!9.50!TFAP2A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.94!7.71!HOXC5;;chr5:124082322..124082364,-!p1@ZNF608!0.92!19.42!ZNF608;;chr7:27170359..27170381,-!p1@HOXA4!0.92!7.39!HOXA4;;chrY:21906594..21906622,-!p1@KDM5D!0.92!7.28!KDM5D;;chr21:38071430..38071456,+!p1@SIM2!0.91!7.18!SIM2;;chr12:66218420..66218439,+!p12@HMGA2!0.90!6.97!HMGA2;;chr6:34204672..34204692,+!p1@HMGA1!0.89!808.21!HMGA1;;chr5:124082580..124082603,-!p4@ZNF608!0.89!7.81!ZNF608;;chr2:177016336..177016350,+!p1@HOXD4!0.89!6.76!HOXD4;;chr10:102505493..102505546,+!p2@PAX2!0.88!6.54!PAX2;;chr15:83953397..83953425,-!p1@BNC1!0.87!7.39!BNC1;;chr2:176969097..176969109,+!p3@HOXD11!0.86!6.23!HOXD11;;chr11:61520075..61520136,+!p1@C11orf9!0.85!13.51!C11orf9;;chr7:27213893..27213954,-!p1@HOXA10!0.85!6.02!HOXA10;;chr16:86600870..86600921,+!p2@FOXC2!0.83!5.81!FOXC2;;chr16:51185172..51185197,-!p1@SALL1!0.83!5.70!SALL1;;chr19:20278043..20278054,+!p2@ZNF486!0.83!5.70!ZNF486;;chr12:66357214..66357233,+!p13@HMGA2!0.83!5.70!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!0.82!7.07!HOXC4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.82!5.59!POU3F3;;chr6:21593973..21593988,+!p1@SOX4!0.81!212.58!SOX4;;chr17:46675558..46675577,-!p2@HOXB6!0.81!5.38!HOXB6;;chr17:46692457..46692484,-!p2@HOXB8!0.80!5.28!HOXB8;;chr5:2751762..2751784,-!p1@IRX2!0.80!5.28!IRX2;;chr10:119302232..119302265,+!p1@EMX2!0.80!5.28!EMX2;;chr10:119303078..119303169,+!p2@EMX2!0.79!5.17!EMX2;;chr9:20621927..20621996,-!p3@MLLT3!0.78!8.76!MLLT3;;chr5:124082470..124082483,-!p8@ZNF608!0.78!4.96!ZNF608;;chr3:170076314..170076334,+!p2@SKIL!0.77!6.65!SKIL;;chr2:176969179..176969226,+!p2@HOXD11!0.77!4.86!HOXD11;;chr1:209979411..209979433,-!p2@IRF6!0.77!4.86!IRF6;;chr7:64838786..64838809,+!p2@ZNF92!0.76!29.77!ZNF92;;chr17:46703942..46703964,-!p4@HOXB9!0.76!4.75!HOXB9;;chr2:176969228..176969260,+!p1@HOXD11!0.76!4.75!HOXD11;;chr1:151032860..151032918,+!p1@MLLT11!0.75!60.90!MLLT11;;chr12:66218152..66218174,+!p10@HMGA2!0.75!5.07!HMGA2;;chr7:27153428..27153440,-!p3@HOXA3!0.74!4.43!HOXA3;;chr2:5832493..5832507,+!p2@SOX11!0.74!4.43!SOX11;;chr17:46622175..46622186,-!p12@HOXB2!0.74!4.43!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.73!10.56!HOXB2;;chr7:27219833..27219845,-!p7@HOXA10!0.73!4.33!HOXA10;;chr9:20622478..20622525,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| |expression_enrichment_score=chr17:36105042..36105060,-!p1@HNF1B!1.95!87.92!HNF1B;;chr17:46703687..46703740,-!p1@HOXB9!1.84!68.29!HOXB9;;chr2:114036488..114036504,-!p1@PAX8!1.73!52.14!PAX8;;chr1:201979703..201979721,+!p2@ELF3!1.71!49.71!ELF3;;chr12:66218598..66218645,+!p2@HMGA2!1.66!197.70!HMGA2;;chr17:35294075..35294102,+!p1@ENST00000559335!1.64!42.43!LHX1;;chr17:46682321..46682362,-!p1@HOXB6!1.63!41.27!HOXB6;;chr12:66218255..66218304,+!p3@HMGA2!1.58!96.05!HMGA2;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.83!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.54!37.37!IRF6;;chr17:46703826..46703845,-!p3@HOXB9!1.53!33.25!HOXB9;;chr7:27205136..27205164,-!p1@HOXA9!1.45!27.44!HOXA9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.44!26.60!POU3F3;;chr12:66218183..66218209,+!p4@HMGA2!1.33!38.63!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!1.29!18.37!HOXA9;;chr7:27153454..27153469,-!p2@HOXA3!1.28!17.84!HOXA3;;chr16:86600426..86600441,+!p1@FOXC2!1.25!41.38!FOXC2;;chr12:66218212..66218244,+!p5@HMGA2!1.25!24.28!HMGA2;;chr11:34642612..34642646,+!p1@EHF!1.21!15.30!EHF;;chr7:27192185..27192209,-!p1@HOXA3!1.20!14.67!HOXA3;;chr3:141043020..141043049,+!p17@ZBTB38!1.19!14.36!ZBTB38;;chr17:46622205..46622218,-!p3@HOXB2!1.18!16.36!HOXB2;;chr3:69811858..69811881,+!p5@MITF!1.18!14.14!MITF;;chr12:66218836..66218888,+!p1@HMGA2!1.16!123.92!HMGA2;;chr3:69811882..69811898,+!p6@MITF!1.16!13.30!MITF;;chr7:27183291..27183324,-!p1@HOXA5!1.14!12.88!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!1.12!12.03!HOXA5;;chr7:26191809..26191890,+!p1@NFE2L3!1.10!57.42!NFE2L3;;chr12:66218443..66218461,+!p8@HMGA2!1.10!14.88!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!1.09!17.52!HMGA2;;chr6:50786591..50786614,+!p1@TFAP2B!1.08!11.08!TFAP2B;;chr12:54378923..54378966,+!p1@HOXC10!1.06!10.56!HOXC10;;chr2:177053386..177053402,+!p1@HOXD1!1.06!10.56!HOXD1;;chr7:27224795..27224840,-!p2@HOXA11!1.06!10.45!HOXA11;;chr12:66218003..66218018,+!p9@HMGA2!1.05!12.35!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!1.04!14.99!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!1.04!14.57!HOXB7;;chr2:5832508..5832524,+!p1@SOX11!1.03!9.82!SOX11;;chr2:176994408..176994492,+!p1@HOXD8!1.03!9.61!HOXD8;;chr17:46622229..46622257,-!p6@HOXB2!1.02!11.08!HOXB2;;chr7:27224842..27224872,-!p1@HOXA11!1.01!9.29!HOXA11;;chr12:54393880..54393962,+!p1@HOXC9!1.01!9.18!HOXC9;;chr6:10412600..10412637,-!p1@TFAP2A!1.00!15.30!TFAP2A;;chr7:27196217..27196246,-!p2@HOXA7!1.00!9.08!HOXA7;;chr6:34204921..34204939,+!p3@HMGA1!0.99!268.42!HMGA1;;chr3:141043050..141043063,+!p22@ZBTB38!0.99!8.76!ZBTB38;;chr17:46622440..46622477,-!p5@HOXB2!0.97!9.39!HOXB2;;chr20:6748325..6748352,+!p1@BMP2!0.96!11.82!BMP2;;chr6:21597765..21597779,+!p2@SOX4!0.95!66.60!SOX4;;chr6:10415276..10415341,-!p2@TFAP2A!0.94!9.50!TFAP2A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.94!7.71!HOXC5;;chr5:124082322..124082364,-!p1@ZNF608!0.92!19.42!ZNF608;;chr7:27170359..27170381,-!p1@HOXA4!0.92!7.39!HOXA4;;chrY:21906594..21906622,-!p1@KDM5D!0.92!7.28!KDM5D;;chr21:38071430..38071456,+!p1@SIM2!0.91!7.18!SIM2;;chr12:66218420..66218439,+!p12@HMGA2!0.90!6.97!HMGA2;;chr6:34204672..34204692,+!p1@HMGA1!0.89!808.21!HMGA1;;chr5:124082580..124082603,-!p4@ZNF608!0.89!7.81!ZNF608;;chr2:177016336..177016350,+!p1@HOXD4!0.89!6.76!HOXD4;;chr10:102505493..102505546,+!p2@PAX2!0.88!6.54!PAX2;;chr15:83953397..83953425,-!p1@BNC1!0.87!7.39!BNC1;;chr2:176969097..176969109,+!p3@HOXD11!0.86!6.23!HOXD11;;chr11:61520075..61520136,+!p1@C11orf9!0.85!13.51!C11orf9;;chr7:27213893..27213954,-!p1@HOXA10!0.85!6.02!HOXA10;;chr16:86600870..86600921,+!p2@FOXC2!0.83!5.81!FOXC2;;chr16:51185172..51185197,-!p1@SALL1!0.83!5.70!SALL1;;chr19:20278043..20278054,+!p2@ZNF486!0.83!5.70!ZNF486;;chr12:66357214..66357233,+!p13@HMGA2!0.83!5.70!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!0.82!7.07!HOXC4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.82!5.59!POU3F3;;chr6:21593973..21593988,+!p1@SOX4!0.81!212.58!SOX4;;chr17:46675558..46675577,-!p2@HOXB6!0.81!5.38!HOXB6;;chr17:46692457..46692484,-!p2@HOXB8!0.80!5.28!HOXB8;;chr5:2751762..2751784,-!p1@IRX2!0.80!5.28!IRX2;;chr10:119302232..119302265,+!p1@EMX2!0.80!5.28!EMX2;;chr10:119303078..119303169,+!p2@EMX2!0.79!5.17!EMX2;;chr9:20621927..20621996,-!p3@MLLT3!0.78!8.76!MLLT3;;chr5:124082470..124082483,-!p8@ZNF608!0.78!4.96!ZNF608;;chr3:170076314..170076334,+!p2@SKIL!0.77!6.65!SKIL;;chr2:176969179..176969226,+!p2@HOXD11!0.77!4.86!HOXD11;;chr1:209979411..209979433,-!p2@IRF6!0.77!4.86!IRF6;;chr7:64838786..64838809,+!p2@ZNF92!0.76!29.77!ZNF92;;chr17:46703942..46703964,-!p4@HOXB9!0.76!4.75!HOXB9;;chr2:176969228..176969260,+!p1@HOXD11!0.76!4.75!HOXD11;;chr1:151032860..151032918,+!p1@MLLT11!0.75!60.90!MLLT11;;chr12:66218152..66218174,+!p10@HMGA2!0.75!5.07!HMGA2;;chr7:27153428..27153440,-!p3@HOXA3!0.74!4.43!HOXA3;;chr2:5832493..5832507,+!p2@SOX11!0.74!4.43!SOX11;;chr17:46622175..46622186,-!p12@HOXB2!0.74!4.43!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.73!10.56!HOXB2;;chr7:27219833..27219845,-!p7@HOXA10!0.73!4.33!HOXA10;;chr9:20622478..20622525,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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12732.11678-122H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12732.11678-122H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12732.11678-122H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12732.11678-122H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12732.11678-122H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11678-122H4 | |id=FF:11678-122H4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000151 | ||
|is_obsolete= | |||
|library_id=CNhs12732 | |||
|library_id_phase_based=2:CNhs12732 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11678 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11678 | |||
|name=Renal Epithelial Cells, donor3 | |name=Renal Epithelial Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12732,LSID960,release012,COMPLETED | |profile_hcage=CNhs12732,LSID960,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0217895143979911,0,0,0,0,0.0237365775314704,0.0831811723542952,-0.231254269410108,-0.240812974399794,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0701418379941324,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.265858181934655,0,-0.178836520665102,0,0.0435790287959822,0,0,0,0,0,0,0.332744850229289,0,0,0.0435790287959822,0.394052718016757,0,0.0276483595238175,0.0435790287959822,-0.0969923612426051,0,0,0.0221283281190006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.069214824973068,0,0,0,0,0,0,0.0446237676755532,0,0,0.00556081457610577,0.130285789001028,0.134140265254609,0,0.0831811723542952,0.092027303808928,0,-0.0544563224417242,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0709606141076945,0,0,0,-0.13390074794771,-0.143906592357718,0,0,-0.0231983586229191,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.0435790287959822,-0.0544563224417242,0,0,0,0,0,0,0,0,0.0831811723542952,0,0,0.0657420474089344,0.0415905861771476,0.197485270628992,0.169405780171027,0.0415905861771476,0,-0.111840765224448,0,0.152962663947244,0,0.0123349671704781,0,0,0,0,0,-0.128119866952565,0,0.0327686207649803,0,0.0831811723542952,0,0,0.0435790287959822,0.106698314871224,0,0.171079606800968,-0.024765232281386,0,0,0,0,-0.188715177270285,0,0.0320831801535037,0.070242495623827,0.358418215161371,0.0266936096798424,0.0363765134619152,0,0,0,0.117247189723083,-0.24306514228761,0,0,0.228180698493644,-0.083078772189046,0,0,-0.391044581551635,0,-0.3041766666744,0.0580239709856635,0,0,0,0,0,0,0.0435790287959822,0,0,0,0.184054607617856,0,0,0.229973224953965,-0.0867236291884769,0,0,0.0831811723542952,0,-0.0236214778446754,0.152962663947244,0.0506725038267788,0.257355304404187,0.0955490921710583,0.0860730133860313,0.259059566427972,0.0037764257665111,0.032278689050398,-0.0419332408782496,0.184074137398899,-0.0659166372627737,0.00556081457610577,0.0758764623848074,0.0435790287959822,-0.157960631176169,-0.010958858008734,-0.00100862821375064,0.0389944682388021,0,-0.013501282041386,0.12279463601655,0,0.265858181934655,0.095929709317578,-0.0217343731859461,0,0.0746071273848912,-0.249849746986282,0.130084050408214,0.101623901584001,-0.165977039012447,0.0666515509341883,0.136742620389925,0.0419929636073694,0.0499584723558314,0,0.0791137276584391,0.0906431392006959,0,0,-0.0025878922820137,-0.0105983360020446,-0.0424506230575479,0,-0.171056539116482,-0.024765232281386,0.092027303808928,0.126280298050484,-0.063688969836252,0.184054607617856,0,-0.030604203840333,0,0,-0.0289339585869655,0.00546327545019823,0.0831811723542952,-0.0989895735372273,-0.326423582236459,-0.189276532759563,0,-0.0177834704762086,0.0228529136934704,0.0126021595242624,0,0.0573178447791727,0,-0.0158193594143127,-0.0131818331704118,0,0.0309416889957819,-0.267099159931447,0.0190639112788537,0.268280530509217,-0.0584468268118252,-0.223077008523305,-0.160207624719247,0.161313147777044,-0.0982645288892716,0.0618082488260456,-0.0881268324752877,0,0.0614716049496601,-0.172103206369098,-0.0536559585646651,-0.0459752060464084,0.0435790287959822,0.0132315718869749,0,-0.153027132016651,0.00573879889617095,0.0326549938273037,-0.496854722677258,0.00699573088723077,-0.284107659810941,0,-0.025425170294023,-0.116559448392973,0.166437740234782,0.0447319971962156,0.0182778984345908,0.521417385931226,0.0336875242832172,0.12146854128545,-0.211650427864589,0.126156397339493,0,-0.19288474144633,0,0.0435790287959822,0.101969364512357,0.0774448849301101,0,-0.175817619150328,-0.146815501237505,-0.069214824973068,0.00350088189716355,0,0,0.319643770093753,0,0.0831811723542952,0.692788408154047,0.0428756800887595,0.480955153209884,-0.209747312690773,-0.00749191571439545,0.414026623569987,0,0,-0.0245651020179314,0,-0.0186458113163384,0,0.0435790287959822,0.227199788181479,0.149230068944522,0,0.0217895143979911,0,0,0,0,0,0,0,0,0,-0.239060202035964,0.0203126942478898,0,0.132208829387647,0,0,0,0.671571489381,0.0435790287959822,0,0,0,0.126155002925283,0.0823226102558653,0.0610371919414362,0,0.0217895143979911,0,0,-0.00265484175976699,-0.120055389740429,0,0.081205854296076,0,0,0,0,-0.0861409897892114,0,0,0.0217895143979911,0.0217895143979911,-0.057730457053664,-0.185893767517715,0,0,0,-0.27695440160179,0,0,0.0435790287959822,-0.0006408636211539,0.0649834240632299,0,0.0153399381074998,0.328420498921859,0,0.142715260694018,0.0378900757852562,0,0.0187011309473905,0.20707053688075,1.03221559722797,0,0.119471955332098,-0.0482785709961799,0,0,0.147310425441525,-0.0387911941696841,0,0,0,0,0,0,0,0.184054607617856,0.775170243124458,0.0435790287959822,0,0,0,0.0831811723542952,0.0435790287959822,0,0,0,0,0.0831811723542952,-0.114706322151163,0.120844504135197,0,0,0,0,0.0673583636279732,0,0,-0.00231650868091199,0.0527855856247409,0,0,0,0,0,0,0,0,-0.11604730997722,0,0,0.152962663947244,0,0.0435790287959822,-0.0969923612426051,0,0,0,0.0435790287959822,-0.481625948799589,0,0,-0.12439946824627,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166707654511437,-0.282109230887571,0,0,0,0,0,0.0831811723542952,0,-0.231254269410108,0,0,0,0,-0.030703201354682,0,0,0,0.0146755705429412,0,0.0237365775314704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.059735977666049,0,0,0,-0.342223727843003,0,-0.021349334038255,-0.00646231904450505,0,0,0.0414581608824977,0,0,0,0,0,0,-0.00955090963053595,0,0,0,0,0,0,0,0.0435790287959822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00163194981886603,0,0,0,0,0,0,0,-0.0979578962680575,0.585448769901175,0,-0.0504422236233786,0,0,0,0,0,0,0.129192313656153,0.329550623771189,0.0633930909389533,0,0,0.0435790287959822,0.154976954147705,0.394052718016757,0,0.0481779880095166,0.0435790287959822,0.379507718049016,0,0,0,0,0,0,0.548173027031079,0.0217895143979911,0.119471955332098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0701418379941324,0,0,0,0,0,0,0,0,0,0,0,0,0.145013370273442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0217895143979911,0,0,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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC4125 | |rna_catalog_number=SC4125 | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.06309676214094e-238!GO:0005737;cytoplasm;1.92949148590066e-197!GO:0043226;organelle;4.2478900665776e-190!GO:0043229;intracellular organelle;1.05083637260478e-189!GO:0043231;intracellular membrane-bound organelle;2.22845422606675e-180!GO:0043227;membrane-bound organelle;2.69397932399536e-180!GO:0044422;organelle part;1.73549757782431e-145!GO:0044446;intracellular organelle part;8.7136813405375e-144!GO:0044444;cytoplasmic part;3.22080458412088e-136!GO:0032991;macromolecular complex;2.31020465726657e-94!GO:0044238;primary metabolic process;7.33495929568523e-83!GO:0005515;protein binding;1.27489879414849e-82!GO:0030529;ribonucleoprotein complex;3.55510327019428e-81!GO:0044237;cellular metabolic process;1.56723516092548e-80!GO:0043170;macromolecule metabolic process;1.43789502280698e-75!GO:0044428;nuclear part;1.14454641788894e-66!GO:0043233;organelle lumen;2.51180706391799e-66!GO:0031974;membrane-enclosed lumen;2.51180706391799e-66!GO:0005634;nucleus;2.80627979796616e-65!GO:0003723;RNA binding;6.16058152330479e-65!GO:0005739;mitochondrion;1.23923759539216e-62!GO:0016043;cellular component organization and biogenesis;2.09424621290444e-55!GO:0019538;protein metabolic process;6.6140591236566e-53!GO:0031090;organelle membrane;9.3682133514527e-53!GO:0005840;ribosome;7.87136975770297e-50!GO:0006412;translation;3.88836073172609e-48!GO:0043234;protein complex;4.6119188197446e-48!GO:0033036;macromolecule localization;8.21122352535539e-48!GO:0015031;protein transport;1.03336692966522e-47!GO:0044260;cellular macromolecule metabolic process;7.65132292026246e-47!GO:0044267;cellular protein metabolic process;8.69221858203921e-47!GO:0008104;protein localization;1.9357463176384e-44!GO:0045184;establishment of protein localization;8.50175265780287e-44!GO:0006396;RNA processing;3.640086923883e-43!GO:0003735;structural constituent of ribosome;5.52018286278549e-43!GO:0044429;mitochondrial part;5.30341777702535e-42!GO:0009058;biosynthetic process;2.60500604448033e-41!GO:0043283;biopolymer metabolic process;4.02215053472294e-40!GO:0031967;organelle envelope;7.26960111842314e-40!GO:0031975;envelope;1.91939323748781e-39!GO:0046907;intracellular transport;3.27404739334869e-39!GO:0031981;nuclear lumen;1.16794709050012e-38!GO:0043228;non-membrane-bound organelle;1.21492564880096e-38!GO:0043232;intracellular non-membrane-bound organelle;1.21492564880096e-38!GO:0005829;cytosol;3.69559854536981e-38!GO:0009059;macromolecule biosynthetic process;6.63064642854376e-38!GO:0033279;ribosomal subunit;1.91149757610502e-37!GO:0044249;cellular biosynthetic process;4.4375498031084e-37!GO:0006996;organelle organization and biogenesis;1.14281074095242e-36!GO:0016071;mRNA metabolic process;2.12077220758861e-34!GO:0010467;gene expression;2.42146878741612e-33!GO:0008380;RNA splicing;2.45525058637094e-33!GO:0065003;macromolecular complex assembly;4.73270758216344e-33!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.84637878974143e-31!GO:0022607;cellular component assembly;1.81042658394859e-30!GO:0006886;intracellular protein transport;1.87227647011195e-30!GO:0006397;mRNA processing;7.42541486672762e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.16318441803931e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.5636905632574e-28!GO:0005740;mitochondrial envelope;7.38834047755552e-27!GO:0051649;establishment of cellular localization;4.14407050995521e-26!GO:0051641;cellular localization;5.33185636886775e-26!GO:0019866;organelle inner membrane;6.31566905376004e-25!GO:0031966;mitochondrial membrane;7.85940340535489e-25!GO:0012505;endomembrane system;2.3448387743842e-24!GO:0005681;spliceosome;2.82010116660634e-24!GO:0007049;cell cycle;1.64178821557534e-23!GO:0044445;cytosolic part;2.15689415659029e-23!GO:0000166;nucleotide binding;4.15961381917981e-23!GO:0005743;mitochondrial inner membrane;5.26484170089816e-23!GO:0005654;nucleoplasm;9.65446961617769e-23!GO:0016462;pyrophosphatase activity;2.26462791410053e-22!GO:0006259;DNA metabolic process;2.634185749311e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.91928910047197e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.92645580547568e-22!GO:0017111;nucleoside-triphosphatase activity;1.83428327942287e-21!GO:0006457;protein folding;1.12496083092863e-20!GO:0015935;small ribosomal subunit;3.81579530098974e-20!GO:0006119;oxidative phosphorylation;4.1681341738093e-20!GO:0005783;endoplasmic reticulum;8.4103570986598e-20!GO:0005794;Golgi apparatus;6.82873312161629e-19!GO:0022618;protein-RNA complex assembly;1.71389948498164e-18!GO:0015934;large ribosomal subunit;3.10757819443894e-18!GO:0031980;mitochondrial lumen;3.60175857657332e-18!GO:0005759;mitochondrial matrix;3.60175857657332e-18!GO:0048770;pigment granule;7.62562622015958e-18!GO:0042470;melanosome;7.62562622015958e-18!GO:0044265;cellular macromolecule catabolic process;8.57003017216215e-18!GO:0044451;nucleoplasm part;1.32186937686003e-17!GO:0022402;cell cycle process;1.50953736986501e-17!GO:0032553;ribonucleotide binding;3.00043368755479e-17!GO:0032555;purine ribonucleotide binding;3.00043368755479e-17!GO:0016874;ligase activity;3.13568097264266e-17!GO:0000278;mitotic cell cycle;3.33184266742637e-17!GO:0005730;nucleolus;7.13364175290549e-17!GO:0043285;biopolymer catabolic process;1.27788399943166e-16!GO:0017076;purine nucleotide binding;1.48143305255171e-16!GO:0009057;macromolecule catabolic process;1.77012034403048e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.81760181445136e-16!GO:0044455;mitochondrial membrane part;1.95263512225507e-16!GO:0019941;modification-dependent protein catabolic process;3.45865554680199e-16!GO:0043632;modification-dependent macromolecule catabolic process;3.45865554680199e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.50265029784324e-16!GO:0044432;endoplasmic reticulum part;3.73166988163463e-16!GO:0006512;ubiquitin cycle;3.97997857983498e-16!GO:0044257;cellular protein catabolic process;6.81311804225357e-16!GO:0000502;proteasome complex (sensu Eukaryota);9.15958310330709e-16!GO:0008134;transcription factor binding;1.90893109157792e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.59744610949295e-15!GO:0030163;protein catabolic process;4.78962768825654e-15!GO:0044248;cellular catabolic process;4.81721389204856e-15!GO:0006605;protein targeting;4.88447514367988e-15!GO:0003676;nucleic acid binding;5.05950633065435e-15!GO:0043412;biopolymer modification;7.60447710971468e-15!GO:0008135;translation factor activity, nucleic acid binding;1.13829362809533e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.76627684137658e-14!GO:0048193;Golgi vesicle transport;1.98460558120624e-14!GO:0012501;programmed cell death;2.91563477423346e-14!GO:0005746;mitochondrial respiratory chain;3.72660191087827e-14!GO:0051082;unfolded protein binding;4.38178708109508e-14!GO:0005635;nuclear envelope;4.75271133230635e-14!GO:0006974;response to DNA damage stimulus;6.09269481093089e-14!GO:0051186;cofactor metabolic process;6.09269481093089e-14!GO:0006915;apoptosis;6.12622256543745e-14!GO:0005761;mitochondrial ribosome;7.66650421265096e-14!GO:0000313;organellar ribosome;7.66650421265096e-14!GO:0016192;vesicle-mediated transport;8.63014478712552e-14!GO:0006464;protein modification process;8.98410222845474e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.4892378004706e-13!GO:0003954;NADH dehydrogenase activity;3.4892378004706e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.4892378004706e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.75911550899685e-13!GO:0000087;M phase of mitotic cell cycle;6.20688133998201e-13!GO:0016070;RNA metabolic process;8.18025661584342e-13!GO:0022403;cell cycle phase;9.93775181975631e-13!GO:0007067;mitosis;1.12907397298435e-12!GO:0005524;ATP binding;1.37986761612166e-12!GO:0008219;cell death;1.38075691401052e-12!GO:0016265;death;1.38075691401052e-12!GO:0031965;nuclear membrane;2.25779497095022e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;2.37863929068887e-12!GO:0000375;RNA splicing, via transesterification reactions;2.37863929068887e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.37863929068887e-12!GO:0032559;adenyl ribonucleotide binding;3.40197443409794e-12!GO:0005694;chromosome;4.42501770890581e-12!GO:0006413;translational initiation;6.7404096143029e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.19379855233829e-12!GO:0044453;nuclear membrane part;9.34816995077918e-12!GO:0051301;cell division;1.14295664170726e-11!GO:0005789;endoplasmic reticulum membrane;1.47094799650514e-11!GO:0003743;translation initiation factor activity;1.71418129247125e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.76669834611648e-11!GO:0042773;ATP synthesis coupled electron transport;1.76669834611648e-11!GO:0042254;ribosome biogenesis and assembly;1.80165215135125e-11!GO:0030554;adenyl nucleotide binding;1.88429024336095e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.24473864604924e-11!GO:0045271;respiratory chain complex I;2.24473864604924e-11!GO:0005747;mitochondrial respiratory chain complex I;2.24473864604924e-11!GO:0044427;chromosomal part;3.26260727396166e-11!GO:0006732;coenzyme metabolic process;3.73147175203876e-11!GO:0043687;post-translational protein modification;4.51308456492965e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.71113440436772e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.02290933336582e-11!GO:0006281;DNA repair;7.03045529341233e-11!GO:0006446;regulation of translational initiation;1.06433960770787e-10!GO:0003924;GTPase activity;1.06491521043075e-10!GO:0006913;nucleocytoplasmic transport;1.65504438528387e-10!GO:0009055;electron carrier activity;1.65977028957579e-10!GO:0009259;ribonucleotide metabolic process;1.70471132272251e-10!GO:0043067;regulation of programmed cell death;2.31243173819358e-10!GO:0000279;M phase;2.80963083762705e-10!GO:0042623;ATPase activity, coupled;2.81133410693798e-10!GO:0042981;regulation of apoptosis;2.82413658738523e-10!GO:0051169;nuclear transport;4.60264697593745e-10!GO:0000074;regulation of progression through cell cycle;4.64872647316054e-10!GO:0015630;microtubule cytoskeleton;4.75259198353177e-10!GO:0016604;nuclear body;5.14507687324452e-10!GO:0051276;chromosome organization and biogenesis;5.14507687324452e-10!GO:0006163;purine nucleotide metabolic process;5.5235670149774e-10!GO:0051726;regulation of cell cycle;5.91853076263155e-10!GO:0009719;response to endogenous stimulus;5.93161919584018e-10!GO:0006461;protein complex assembly;6.44782796332787e-10!GO:0016887;ATPase activity;6.46804561799224e-10!GO:0005643;nuclear pore;8.10393161029136e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.12396862817345e-09!GO:0003712;transcription cofactor activity;1.32772342025969e-09!GO:0043069;negative regulation of programmed cell death;1.38943063132468e-09!GO:0048523;negative regulation of cellular process;1.42199261812366e-09!GO:0009056;catabolic process;1.43832954002935e-09!GO:0009150;purine ribonucleotide metabolic process;1.58299427785098e-09!GO:0008639;small protein conjugating enzyme activity;2.09233667343405e-09!GO:0006164;purine nucleotide biosynthetic process;2.67130069081148e-09!GO:0009260;ribonucleotide biosynthetic process;2.71586679077622e-09!GO:0004842;ubiquitin-protein ligase activity;3.42338545223226e-09!GO:0043066;negative regulation of apoptosis;4.42116420558332e-09!GO:0005768;endosome;4.48567475651613e-09!GO:0005793;ER-Golgi intermediate compartment;4.59183541383315e-09!GO:0019787;small conjugating protein ligase activity;6.29299421343079e-09!GO:0006260;DNA replication;7.30826417756906e-09!GO:0009152;purine ribonucleotide biosynthetic process;7.56005036759369e-09!GO:0008565;protein transporter activity;7.56194555508126e-09!GO:0050794;regulation of cellular process;7.68069792458513e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.72201826799247e-09!GO:0044431;Golgi apparatus part;1.10733821371581e-08!GO:0005525;GTP binding;1.15188616464945e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.31081776553837e-08!GO:0009060;aerobic respiration;1.47952248890193e-08!GO:0006916;anti-apoptosis;1.52419341452574e-08!GO:0051246;regulation of protein metabolic process;1.93601592898238e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.94511997163954e-08!GO:0007005;mitochondrion organization and biogenesis;2.06440645191305e-08!GO:0065004;protein-DNA complex assembly;2.09956662347251e-08!GO:0009141;nucleoside triphosphate metabolic process;2.23970930336989e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;2.26527976320057e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.26810112447752e-08!GO:0065002;intracellular protein transport across a membrane;2.31851192170377e-08!GO:0004386;helicase activity;2.33256272901775e-08!GO:0006399;tRNA metabolic process;2.41356239858063e-08!GO:0048519;negative regulation of biological process;2.48767054402935e-08!GO:0016607;nuclear speck;2.81800728046862e-08!GO:0006403;RNA localization;3.04405603799976e-08!GO:0050657;nucleic acid transport;3.31787534974028e-08!GO:0051236;establishment of RNA localization;3.31787534974028e-08!GO:0050658;RNA transport;3.31787534974028e-08!GO:0007010;cytoskeleton organization and biogenesis;3.41503483611646e-08!GO:0017038;protein import;3.97718191016503e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.14873469545306e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.14873469545306e-08!GO:0045333;cellular respiration;4.3650577065896e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.8651538886849e-08!GO:0015986;ATP synthesis coupled proton transport;5.73010199935012e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.73010199935012e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.04261861105295e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.04261861105295e-08!GO:0006323;DNA packaging;6.56516946244718e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.65352343943508e-08!GO:0031988;membrane-bound vesicle;9.14282690252998e-08!GO:0016881;acid-amino acid ligase activity;9.25969517539753e-08!GO:0046930;pore complex;1.15255670460369e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.15255670460369e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.15255670460369e-07!GO:0000785;chromatin;1.35799526078916e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.42475312246847e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.51876640887859e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.52964211578882e-07!GO:0030120;vesicle coat;1.69846859071188e-07!GO:0030662;coated vesicle membrane;1.69846859071188e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.76904487484527e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.76904487484527e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.76904487484527e-07!GO:0008026;ATP-dependent helicase activity;1.78764662134919e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.86468076647215e-07!GO:0048475;coated membrane;1.92069532626791e-07!GO:0030117;membrane coat;1.92069532626791e-07!GO:0032561;guanyl ribonucleotide binding;1.99339852918878e-07!GO:0019001;guanyl nucleotide binding;1.99339852918878e-07!GO:0051188;cofactor biosynthetic process;2.13232499515573e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.27805902353894e-07!GO:0043038;amino acid activation;2.42377435454221e-07!GO:0006418;tRNA aminoacylation for protein translation;2.42377435454221e-07!GO:0043039;tRNA aminoacylation;2.42377435454221e-07!GO:0006099;tricarboxylic acid cycle;2.6291740516626e-07!GO:0046356;acetyl-CoA catabolic process;2.6291740516626e-07!GO:0006364;rRNA processing;2.81606188552009e-07!GO:0016740;transferase activity;2.99365557757654e-07!GO:0019829;cation-transporting ATPase activity;3.08519181429982e-07!GO:0006333;chromatin assembly or disassembly;3.75069097184309e-07!GO:0016072;rRNA metabolic process;4.57413624987311e-07!GO:0046034;ATP metabolic process;4.73224524095918e-07!GO:0009117;nucleotide metabolic process;5.04568052863631e-07!GO:0016787;hydrolase activity;5.38675752501633e-07!GO:0031982;vesicle;5.6273473142265e-07!GO:0000139;Golgi membrane;7.85579311238309e-07!GO:0030036;actin cytoskeleton organization and biogenesis;7.97941961312016e-07!GO:0031410;cytoplasmic vesicle;9.17561764866872e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.79488040595754e-07!GO:0006084;acetyl-CoA metabolic process;9.90242872486553e-07!GO:0031252;leading edge;1.01460646369771e-06!GO:0006754;ATP biosynthetic process;1.17678798156625e-06!GO:0006753;nucleoside phosphate metabolic process;1.17678798156625e-06!GO:0032446;protein modification by small protein conjugation;1.20097959668821e-06!GO:0044440;endosomal part;1.22821630339799e-06!GO:0010008;endosome membrane;1.22821630339799e-06!GO:0051028;mRNA transport;1.27107157875956e-06!GO:0006793;phosphorus metabolic process;1.57233905398553e-06!GO:0006796;phosphate metabolic process;1.57233905398553e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.69388944553671e-06!GO:0006366;transcription from RNA polymerase II promoter;2.02706024991613e-06!GO:0016567;protein ubiquitination;2.17753336670499e-06!GO:0043566;structure-specific DNA binding;2.34058776256614e-06!GO:0006334;nucleosome assembly;2.48388276323563e-06!GO:0005788;endoplasmic reticulum lumen;2.63123915901322e-06!GO:0005770;late endosome;2.8538907640389e-06!GO:0051170;nuclear import;4.02923312257313e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.08320623362938e-06!GO:0000245;spliceosome assembly;4.3048610066489e-06!GO:0003697;single-stranded DNA binding;4.42936382815641e-06!GO:0051187;cofactor catabolic process;4.44955537339906e-06!GO:0016563;transcription activator activity;4.53627617522443e-06!GO:0009109;coenzyme catabolic process;4.66217646648671e-06!GO:0050789;regulation of biological process;5.37247314924601e-06!GO:0009108;coenzyme biosynthetic process;6.93622400932796e-06!GO:0006613;cotranslational protein targeting to membrane;7.46346919315009e-06!GO:0004298;threonine endopeptidase activity;7.74816358513442e-06!GO:0030029;actin filament-based process;7.87687414952702e-06!GO:0016853;isomerase activity;8.47724225092589e-06!GO:0045259;proton-transporting ATP synthase complex;9.24004828843299e-06!GO:0005798;Golgi-associated vesicle;9.96009913489518e-06!GO:0048471;perinuclear region of cytoplasm;1.01370846758903e-05!GO:0031497;chromatin assembly;1.03627589167894e-05!GO:0008654;phospholipid biosynthetic process;1.07395805198044e-05!GO:0006606;protein import into nucleus;1.07395805198044e-05!GO:0005773;vacuole;1.1821023844648e-05!GO:0008092;cytoskeletal protein binding;1.21996398365804e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.22626997464384e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.36256334962692e-05!GO:0045786;negative regulation of progression through cell cycle;1.85802563565939e-05!GO:0016310;phosphorylation;1.88677177488828e-05!GO:0003714;transcription corepressor activity;1.90645809438402e-05!GO:0016126;sterol biosynthetic process;2.08167415680134e-05!GO:0043623;cellular protein complex assembly;2.1071622394841e-05!GO:0005819;spindle;2.1471187611721e-05!GO:0007264;small GTPase mediated signal transduction;2.70720993686052e-05!GO:0006752;group transfer coenzyme metabolic process;2.85001882150882e-05!GO:0005874;microtubule;3.35347065582647e-05!GO:0042802;identical protein binding;3.89089036008208e-05!GO:0005667;transcription factor complex;3.89902066960646e-05!GO:0016491;oxidoreductase activity;3.97197836715543e-05!GO:0005813;centrosome;4.03856009904645e-05!GO:0003724;RNA helicase activity;4.57231162216639e-05!GO:0030867;rough endoplasmic reticulum membrane;5.30056169586648e-05!GO:0005762;mitochondrial large ribosomal subunit;5.49518363195414e-05!GO:0000315;organellar large ribosomal subunit;5.49518363195414e-05!GO:0005815;microtubule organizing center;5.52830596673136e-05!GO:0003713;transcription coactivator activity;5.55330402796302e-05!GO:0048522;positive regulation of cellular process;5.55330402796302e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.8060415693692e-05!GO:0016859;cis-trans isomerase activity;5.92301955289081e-05!GO:0019899;enzyme binding;6.83544661438858e-05!GO:0051329;interphase of mitotic cell cycle;7.01869137414669e-05!GO:0006695;cholesterol biosynthetic process;7.86266549113311e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.10010136676959e-05!GO:0048468;cell development;8.35946484322547e-05!GO:0043021;ribonucleoprotein binding;8.92145317380241e-05!GO:0005905;coated pit;8.96764272755904e-05!GO:0000323;lytic vacuole;8.97552938952162e-05!GO:0005764;lysosome;8.97552938952162e-05!GO:0005769;early endosome;9.667126498623e-05!GO:0000151;ubiquitin ligase complex;0.000100936769841489!GO:0045454;cell redox homeostasis;0.000132933275925589!GO:0007243;protein kinase cascade;0.000154332905676096!GO:0051427;hormone receptor binding;0.000160133703523029!GO:0016568;chromatin modification;0.00017365337552585!GO:0051325;interphase;0.000176236293684323!GO:0016779;nucleotidyltransferase activity;0.00019258580423348!GO:0006612;protein targeting to membrane;0.0002018681089602!GO:0008610;lipid biosynthetic process;0.000216563020031547!GO:0001726;ruffle;0.000248649578320885!GO:0015980;energy derivation by oxidation of organic compounds;0.000249702977925023!GO:0000314;organellar small ribosomal subunit;0.000250732686048821!GO:0005763;mitochondrial small ribosomal subunit;0.000250732686048821!GO:0019843;rRNA binding;0.00025237576658242!GO:0005048;signal sequence binding;0.000295966903951019!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000295966903951019!GO:0001558;regulation of cell growth;0.000297343176446431!GO:0016564;transcription repressor activity;0.000298880647452967!GO:0007051;spindle organization and biogenesis;0.000301046875200755!GO:0035257;nuclear hormone receptor binding;0.000311677137322137!GO:0008250;oligosaccharyl transferase complex;0.000339167215554587!GO:0030133;transport vesicle;0.000356037199314338!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000364852878940594!GO:0005885;Arp2/3 protein complex;0.000371070039930066!GO:0009892;negative regulation of metabolic process;0.000374740975516336!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000441123879721952!GO:0006261;DNA-dependent DNA replication;0.000454605114518211!GO:0031324;negative regulation of cellular metabolic process;0.000454838593072009!GO:0033116;ER-Golgi intermediate compartment membrane;0.00048943132039607!GO:0065009;regulation of a molecular function;0.000496449491802067!GO:0030118;clathrin coat;0.000591469003555063!GO:0016363;nuclear matrix;0.000598338326025466!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000610366265934142!GO:0051168;nuclear export;0.000618846154547422!GO:0008186;RNA-dependent ATPase activity;0.000621747677839696!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000626814706538832!GO:0046467;membrane lipid biosynthetic process;0.000657463741254874!GO:0008632;apoptotic program;0.000669315934499068!GO:0031968;organelle outer membrane;0.000690155776374634!GO:0008361;regulation of cell size;0.000701871733884198!GO:0016044;membrane organization and biogenesis;0.000724703457322794!GO:0004576;oligosaccharyl transferase activity;0.000746650945237817!GO:0009165;nucleotide biosynthetic process;0.000800324445907427!GO:0051920;peroxiredoxin activity;0.000817061858056218!GO:0007088;regulation of mitosis;0.000817061858056218!GO:0009967;positive regulation of signal transduction;0.000864762442445134!GO:0016049;cell growth;0.000864762442445134!GO:0003899;DNA-directed RNA polymerase activity;0.000879248449776014!GO:0005791;rough endoplasmic reticulum;0.000899883766682272!GO:0000075;cell cycle checkpoint;0.000952223759984169!GO:0006839;mitochondrial transport;0.000998801994538926!GO:0019867;outer membrane;0.00103925426123426!GO:0006414;translational elongation;0.00103961104710874!GO:0007017;microtubule-based process;0.00106327946124542!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00109859620159813!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00110080951825358!GO:0008637;apoptotic mitochondrial changes;0.00114002019575622!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00114002019575622!GO:0030658;transport vesicle membrane;0.00114797916292363!GO:0046474;glycerophospholipid biosynthetic process;0.00118717531854702!GO:0018196;peptidyl-asparagine modification;0.00144059519454955!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00144059519454955!GO:0005741;mitochondrial outer membrane;0.00146726616488385!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00149462514673131!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00149462514673131!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00149462514673131!GO:0043681;protein import into mitochondrion;0.00164996797845056!GO:0003690;double-stranded DNA binding;0.00170892899906428!GO:0004004;ATP-dependent RNA helicase activity;0.00170892899906428!GO:0006383;transcription from RNA polymerase III promoter;0.00171635508516883!GO:0003729;mRNA binding;0.00177040696853057!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0018787147284776!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0019093586692!GO:0043065;positive regulation of apoptosis;0.00194364573974357!GO:0031072;heat shock protein binding;0.00202183288721521!GO:0044262;cellular carbohydrate metabolic process;0.00204930866750893!GO:0000775;chromosome, pericentric region;0.00217958105660528!GO:0008139;nuclear localization sequence binding;0.00233270552805848!GO:0048500;signal recognition particle;0.00235747234111242!GO:0048487;beta-tubulin binding;0.00242807259152457!GO:0030660;Golgi-associated vesicle membrane;0.00248883459233054!GO:0015631;tubulin binding;0.00259127559739405!GO:0051789;response to protein stimulus;0.00263961505002721!GO:0006986;response to unfolded protein;0.00263961505002721!GO:0043068;positive regulation of programmed cell death;0.0026477115104358!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00268462415145816!GO:0015399;primary active transmembrane transporter activity;0.00268462415145816!GO:0000786;nucleosome;0.00269182875648845!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00271702283980318!GO:0030119;AP-type membrane coat adaptor complex;0.00272055725555437!GO:0004674;protein serine/threonine kinase activity;0.00272161585523752!GO:0030027;lamellipodium;0.00286549747540438!GO:0006891;intra-Golgi vesicle-mediated transport;0.00287029647029621!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00303497303334555!GO:0016197;endosome transport;0.00304950489703674!GO:0007006;mitochondrial membrane organization and biogenesis;0.00335803657480244!GO:0040008;regulation of growth;0.00343313649032074!GO:0045045;secretory pathway;0.00345349899017758!GO:0051128;regulation of cellular component organization and biogenesis;0.00350320396939054!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00350320396939054!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00352701411317068!GO:0046489;phosphoinositide biosynthetic process;0.00364871236995278!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00367227242789828!GO:0000059;protein import into nucleus, docking;0.00371607946117075!GO:0001836;release of cytochrome c from mitochondria;0.00373108890631758!GO:0030131;clathrin adaptor complex;0.00373108890631758!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00387961466111233!GO:0031902;late endosome membrane;0.00392330614200285!GO:0005657;replication fork;0.00410256200927422!GO:0006626;protein targeting to mitochondrion;0.0041286168403895!GO:0006401;RNA catabolic process;0.00416268383493506!GO:0051252;regulation of RNA metabolic process;0.00421121694812023!GO:0035258;steroid hormone receptor binding;0.00421641430266305!GO:0007093;mitotic cell cycle checkpoint;0.00430310977638044!GO:0030659;cytoplasmic vesicle membrane;0.00430310977638044!GO:0051087;chaperone binding;0.00435876604334877!GO:0030663;COPI coated vesicle membrane;0.00475170746748433!GO:0030126;COPI vesicle coat;0.00475170746748433!GO:0006302;double-strand break repair;0.00485829255945933!GO:0006650;glycerophospholipid metabolic process;0.005010902531468!GO:0030134;ER to Golgi transport vesicle;0.00502055336530332!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00521201192604705!GO:0045047;protein targeting to ER;0.00521201192604705!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00523803852131604!GO:0006352;transcription initiation;0.00532850524526325!GO:0008312;7S RNA binding;0.00551765340805432!GO:0005856;cytoskeleton;0.00551765340805432!GO:0003684;damaged DNA binding;0.00557118094468049!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00566229542239359!GO:0065007;biological regulation;0.0056774906046178!GO:0000776;kinetochore;0.0058178600079249!GO:0030880;RNA polymerase complex;0.0058388590093798!GO:0006402;mRNA catabolic process;0.00584676125165079!GO:0051287;NAD binding;0.00584676125165079!GO:0030521;androgen receptor signaling pathway;0.00592296988613776!GO:0019222;regulation of metabolic process;0.00594233935560871!GO:0005684;U2-dependent spliceosome;0.00630294210782699!GO:0005637;nuclear inner membrane;0.00658372814758139!GO:0048518;positive regulation of biological process;0.00666108007705386!GO:0051052;regulation of DNA metabolic process;0.00666108007705386!GO:0030127;COPII vesicle coat;0.00666108007705386!GO:0012507;ER to Golgi transport vesicle membrane;0.00666108007705386!GO:0012506;vesicle membrane;0.00670927038324565!GO:0044452;nucleolar part;0.00693358354304653!GO:0000082;G1/S transition of mitotic cell cycle;0.00702885911430528!GO:0045893;positive regulation of transcription, DNA-dependent;0.00708803636316735!GO:0006007;glucose catabolic process;0.00710943924555272!GO:0008629;induction of apoptosis by intracellular signals;0.00735656945308446!GO:0008094;DNA-dependent ATPase activity;0.00738686736909924!GO:0044433;cytoplasmic vesicle part;0.00752554914656146!GO:0003779;actin binding;0.00753188676838036!GO:0008047;enzyme activator activity;0.00776511141390823!GO:0004177;aminopeptidase activity;0.00804818641935321!GO:0005869;dynactin complex;0.00808087992133509!GO:0051101;regulation of DNA binding;0.00826497613653958!GO:0005938;cell cortex;0.00826497613653958!GO:0006950;response to stress;0.00837195846782419!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00852192897813088!GO:0006509;membrane protein ectodomain proteolysis;0.00853290331797715!GO:0033619;membrane protein proteolysis;0.00853290331797715!GO:0030031;cell projection biogenesis;0.0086024547340809!GO:0003746;translation elongation factor activity;0.0088097390395875!GO:0001666;response to hypoxia;0.009101259761204!GO:0015992;proton transport;0.00915424029859307!GO:0006892;post-Golgi vesicle-mediated transport;0.00933784600443247!GO:0051540;metal cluster binding;0.00959563344237208!GO:0051536;iron-sulfur cluster binding;0.00959563344237208!GO:0017166;vinculin binding;0.00994596747281212!GO:0007052;mitotic spindle organization and biogenesis;0.0101892252562793!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0102030243458461!GO:0030137;COPI-coated vesicle;0.0103868601265077!GO:0043492;ATPase activity, coupled to movement of substances;0.0104284811553266!GO:0030132;clathrin coat of coated pit;0.0104829297282713!GO:0031543;peptidyl-proline dioxygenase activity;0.0106778826594789!GO:0006144;purine base metabolic process;0.0108740168148552!GO:0030125;clathrin vesicle coat;0.010990432457635!GO:0030665;clathrin coated vesicle membrane;0.010990432457635!GO:0033673;negative regulation of kinase activity;0.0110667254618439!GO:0006469;negative regulation of protein kinase activity;0.0110667254618439!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.011259662676087!GO:0006595;polyamine metabolic process;0.0113277717800668!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0116001717277436!GO:0000428;DNA-directed RNA polymerase complex;0.0116001717277436!GO:0006417;regulation of translation;0.0117437480992262!GO:0005832;chaperonin-containing T-complex;0.0117437480992262!GO:0006818;hydrogen transport;0.0117437480992262!GO:0006091;generation of precursor metabolites and energy;0.011760558935235!GO:0043022;ribosome binding;0.011760558935235!GO:0016481;negative regulation of transcription;0.011853483075721!GO:0031124;mRNA 3'-end processing;0.0119068688789322!GO:0000339;RNA cap binding;0.0125216391936474!GO:0009116;nucleoside metabolic process;0.0127101850436529!GO:0016272;prefoldin complex;0.0127719524970925!GO:0030176;integral to endoplasmic reticulum membrane;0.0129038815977665!GO:0043284;biopolymer biosynthetic process;0.012995086418889!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0130710952669305!GO:0006740;NADPH regeneration;0.0132296628958612!GO:0006098;pentose-phosphate shunt;0.0132296628958612!GO:0016408;C-acyltransferase activity;0.0132451120425233!GO:0000209;protein polyubiquitination;0.0132658600309398!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0132848375317545!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0133939822424777!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0133939822424777!GO:0009112;nucleobase metabolic process;0.0136988272053364!GO:0008022;protein C-terminus binding;0.0140070734419774!GO:0003711;transcription elongation regulator activity;0.0140278821780677!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0141760111923401!GO:0033043;regulation of organelle organization and biogenesis;0.0141760111923401!GO:0043488;regulation of mRNA stability;0.0142709782548157!GO:0043487;regulation of RNA stability;0.0142709782548157!GO:0008154;actin polymerization and/or depolymerization;0.0144998938678892!GO:0045941;positive regulation of transcription;0.0152001534146913!GO:0008180;signalosome;0.0152001534146913!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0152073006834106!GO:0008033;tRNA processing;0.0152147718186888!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0152396450861609!GO:0045792;negative regulation of cell size;0.0153234659021581!GO:0007021;tubulin folding;0.0154473548985643!GO:0031901;early endosome membrane;0.0155221453540657!GO:0008283;cell proliferation;0.0158633390337893!GO:0032508;DNA duplex unwinding;0.0160045886713996!GO:0032392;DNA geometric change;0.0160045886713996!GO:0030032;lamellipodium biogenesis;0.0162359800165768!GO:0006611;protein export from nucleus;0.0162359800165768!GO:0007050;cell cycle arrest;0.0164869852637506!GO:0051348;negative regulation of transferase activity;0.0166200674066536!GO:0016584;nucleosome positioning;0.0171045054794361!GO:0030308;negative regulation of cell growth;0.0174426183524877!GO:0050681;androgen receptor binding;0.0174757035755097!GO:0005862;muscle thin filament tropomyosin;0.0174941241954154!GO:0050811;GABA receptor binding;0.0180876997467495!GO:0003678;DNA helicase activity;0.0181520073709911!GO:0051059;NF-kappaB binding;0.0183724069380419!GO:0004680;casein kinase activity;0.0187009336321401!GO:0032940;secretion by cell;0.01888616948313!GO:0008234;cysteine-type peptidase activity;0.0189451979986129!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0190908913386506!GO:0016251;general RNA polymerase II transcription factor activity;0.0191441527895471!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0191499329877005!GO:0050662;coenzyme binding;0.0191992621503778!GO:0031625;ubiquitin protein ligase binding;0.0192102802269868!GO:0019798;procollagen-proline dioxygenase activity;0.0203480309617693!GO:0022408;negative regulation of cell-cell adhesion;0.020489663685129!GO:0007242;intracellular signaling cascade;0.020489663685129!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0205339932336737!GO:0006376;mRNA splice site selection;0.0205339932336737!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0205339932336737!GO:0007265;Ras protein signal transduction;0.0206312815891848!GO:0051098;regulation of binding;0.0208643673489252!GO:0046365;monosaccharide catabolic process;0.0211640565117549!GO:0050790;regulation of catalytic activity;0.0211720684403652!GO:0043281;regulation of caspase activity;0.0212230031719928!GO:0001952;regulation of cell-matrix adhesion;0.0212496002816499!GO:0006643;membrane lipid metabolic process;0.0212496002816499!GO:0043154;negative regulation of caspase activity;0.0213569498378003!GO:0006672;ceramide metabolic process;0.0213859018720291!GO:0006289;nucleotide-excision repair;0.0214330880244871!GO:0006497;protein amino acid lipidation;0.0220164139739909!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0221919833293907!GO:0006220;pyrimidine nucleotide metabolic process;0.022231783822419!GO:0032906;transforming growth factor-beta2 production;0.0224867659822617!GO:0032909;regulation of transforming growth factor-beta2 production;0.0224867659822617!GO:0046519;sphingoid metabolic process;0.0227038235972421!GO:0005774;vacuolar membrane;0.0229069725996277!GO:0031418;L-ascorbic acid binding;0.0229981205472623!GO:0051270;regulation of cell motility;0.0230767929463084!GO:0000049;tRNA binding;0.0235415350998579!GO:0030384;phosphoinositide metabolic process;0.0236789731487769!GO:0019752;carboxylic acid metabolic process;0.0237154936746658!GO:0046483;heterocycle metabolic process;0.0239559453322438!GO:0006082;organic acid metabolic process;0.0243501989676615!GO:0031529;ruffle organization and biogenesis;0.024535182533606!GO:0022407;regulation of cell-cell adhesion;0.0245441248714251!GO:0006268;DNA unwinding during replication;0.0246506285901485!GO:0007162;negative regulation of cell adhesion;0.0253976488145369!GO:0000792;heterochromatin;0.0257105338918852!GO:0022406;membrane docking;0.0260777086279219!GO:0048278;vesicle docking;0.0260777086279219!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0262184588601278!GO:0005876;spindle microtubule;0.0262312377182494!GO:0005669;transcription factor TFIID complex;0.0263205575522233!GO:0051090;regulation of transcription factor activity;0.0264677879018034!GO:0006405;RNA export from nucleus;0.0264681090080656!GO:0006378;mRNA polyadenylation;0.0265106363952!GO:0008097;5S rRNA binding;0.0266287322750042!GO:0032984;macromolecular complex disassembly;0.026630493934459!GO:0016311;dephosphorylation;0.0271000447200421!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0274062778969623!GO:0043624;cellular protein complex disassembly;0.0275530281949033!GO:0030145;manganese ion binding;0.0281143614323126!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0281143614323126!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0281143614323126!GO:0007034;vacuolar transport;0.0287339079143775!GO:0008538;proteasome activator activity;0.0287459763183775!GO:0003682;chromatin binding;0.0291754094657276!GO:0006979;response to oxidative stress;0.0291915341896471!GO:0043130;ubiquitin binding;0.0291915341896471!GO:0032182;small conjugating protein binding;0.0291915341896471!GO:0032594;protein transport within lipid bilayer;0.0291915341896471!GO:0032907;transforming growth factor-beta3 production;0.0291915341896471!GO:0032596;protein transport into lipid raft;0.0291915341896471!GO:0032910;regulation of transforming growth factor-beta3 production;0.0291915341896471!GO:0032595;B cell receptor transport within lipid bilayer;0.0291915341896471!GO:0033606;chemokine receptor transport within lipid bilayer;0.0291915341896471!GO:0032600;chemokine receptor transport out of lipid raft;0.0291915341896471!GO:0032599;protein transport out of lipid raft;0.0291915341896471!GO:0032597;B cell receptor transport into lipid raft;0.0291915341896471!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0291915341896471!GO:0043433;negative regulation of transcription factor activity;0.0294213498752273!GO:0030041;actin filament polymerization;0.0295049905929379!GO:0030833;regulation of actin filament polymerization;0.0298409700517611!GO:0051092;activation of NF-kappaB transcription factor;0.0310371063112206!GO:0046822;regulation of nucleocytoplasmic transport;0.0310371063112206!GO:0016791;phosphoric monoester hydrolase activity;0.0315650338498091!GO:0031326;regulation of cellular biosynthetic process;0.031666251085817!GO:0007040;lysosome organization and biogenesis;0.0319145140985934!GO:0051539;4 iron, 4 sulfur cluster binding;0.032075203957326!GO:0019320;hexose catabolic process;0.0321410600794148!GO:0003756;protein disulfide isomerase activity;0.0321410600794148!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0321410600794148!GO:0046164;alcohol catabolic process;0.032648826439431!GO:0006917;induction of apoptosis;0.0327183079378052!GO:0006778;porphyrin metabolic process;0.0338550087993301!GO:0033013;tetrapyrrole metabolic process;0.0338550087993301!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0339918654519485!GO:0005784;translocon complex;0.0340216498985241!GO:0000086;G2/M transition of mitotic cell cycle;0.0340216498985241!GO:0031123;RNA 3'-end processing;0.0348056024297191!GO:0042770;DNA damage response, signal transduction;0.0349885187344838!GO:0009303;rRNA transcription;0.0349885187344838!GO:0003923;GPI-anchor transamidase activity;0.0349885187344838!GO:0016255;attachment of GPI anchor to protein;0.0349885187344838!GO:0042765;GPI-anchor transamidase complex;0.0349885187344838!GO:0006275;regulation of DNA replication;0.0349885187344838!GO:0006096;glycolysis;0.0356727578220312!GO:0042393;histone binding;0.0358934710841874!GO:0006904;vesicle docking during exocytosis;0.0362394203371563!GO:0005996;monosaccharide metabolic process;0.0364570264609456!GO:0048146;positive regulation of fibroblast proliferation;0.0366941182375781!GO:0008243;plasminogen activator activity;0.0369059138106664!GO:0006338;chromatin remodeling;0.0369059138106664!GO:0030100;regulation of endocytosis;0.0370138706058409!GO:0016301;kinase activity;0.0371306294754145!GO:0033559;unsaturated fatty acid metabolic process;0.0371306294754145!GO:0006636;unsaturated fatty acid biosynthetic process;0.0371306294754145!GO:0009889;regulation of biosynthetic process;0.0371408802761912!GO:0019318;hexose metabolic process;0.0372240560699461!GO:0006506;GPI anchor biosynthetic process;0.0372845125817555!GO:0022411;cellular component disassembly;0.0377791226116778!GO:0006897;endocytosis;0.0378201987937543!GO:0010324;membrane invagination;0.0378201987937543!GO:0006739;NADP metabolic process;0.0381174817009912!GO:0030496;midbody;0.0381174817009912!GO:0048144;fibroblast proliferation;0.0381174817009912!GO:0048145;regulation of fibroblast proliferation;0.0381174817009912!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0382138801654414!GO:0030140;trans-Golgi network transport vesicle;0.0383095952906278!GO:0016407;acetyltransferase activity;0.0391991989759553!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0393002801584339!GO:0031371;ubiquitin conjugating enzyme complex;0.040266168184187!GO:0012502;induction of programmed cell death;0.0421995773586678!GO:0008601;protein phosphatase type 2A regulator activity;0.0423277453737864!GO:0000096;sulfur amino acid metabolic process;0.0424224935591008!GO:0006310;DNA recombination;0.042790529462561!GO:0045936;negative regulation of phosphate metabolic process;0.0434795692223995!GO:0042158;lipoprotein biosynthetic process;0.043800630102254!GO:0043241;protein complex disassembly;0.0445110601919383!GO:0031970;organelle envelope lumen;0.045026666396621!GO:0007059;chromosome segregation;0.0463290508519563!GO:0009124;nucleoside monophosphate biosynthetic process;0.0464641330567871!GO:0009123;nucleoside monophosphate metabolic process;0.0464641330567871!GO:0006769;nicotinamide metabolic process;0.0470861210298338!GO:0006984;ER-nuclear signaling pathway;0.0470861210298338!GO:0008426;protein kinase C inhibitor activity;0.0470883004112373!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0470912463646078!GO:0015002;heme-copper terminal oxidase activity;0.0470912463646078!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0470912463646078!GO:0004129;cytochrome-c oxidase activity;0.0470912463646078!GO:0006284;base-excision repair;0.0478089589321836!GO:0006607;NLS-bearing substrate import into nucleus;0.0483576473633694!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.04867896394798!GO:0017134;fibroblast growth factor binding;0.0494728832289115!GO:0001953;negative regulation of cell-matrix adhesion;0.0495359646656996 | |||
|sample_id=11678 | |sample_id=11678 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=XCPE1{core}:1.44554840762;HNF1A:1.39623936257;ZEB1:1.32839257716;TEF:1.25743588657;NKX2-3_NKX2-5:1.22297988728;TBX4,5:1.20776570255;ADNP_IRX_SIX_ZHX:1.19450079314;ALX1:1.16806090865;PAX8:1.15118660062;MYOD1:1.12318992524;SNAI1..3:1.11126780489;SOX2:1.09385871914;GZF1:1.05437152699;SP1:0.956969002015;FOXQ1:0.92591056561;POU1F1:0.787284634777;JUN:0.757006447876;VSX1,2:0.732388936207;ZNF148:0.709487743425;ONECUT1,2:0.657361998158;NKX3-1:0.627695482054;RXRA_VDR{dimer}:0.613742836085;LMO2:0.598763491501;GFI1:0.598170613763;NR3C1:0.588844321988;TFCP2:0.55580917633;PBX1:0.528717045173;NR1H4:0.528419727812;TEAD1:0.513620584825;EBF1:0.502750080649;EVI1:0.491883631803;FOSL2:0.472869143172;NKX6-1,2:0.461728472967;ESRRA:0.450555378086;STAT5{A,B}:0.449904443598;HOX{A5,B5}:0.446356136117;POU2F1..3:0.441249262679;ZIC1..3:0.439386484564;EN1,2:0.435258352509;AIRE:0.433415268546;PDX1:0.423305301183;KLF4:0.421622286565;PAX5:0.408726168196;ATF2:0.40326041702;LHX3,4:0.373788736423;TFDP1:0.367669009602;E2F1..5:0.336923221458;NFY{A,B,C}:0.323586208664;ARID5B:0.312889987987;ZFP161:0.305669335681;TP53:0.30375415969;MTF1:0.291297502545;MAZ:0.288893889831;SOX17:0.288351436612;SRF:0.280981763264;HSF1,2:0.269923375599;TFAP2{A,C}:0.258102933243;GFI1B:0.239786696497;STAT1,3:0.212702429576;NFE2L2:0.210829713907;ALX4:0.188587663861;TBP:0.155784478345;UFEwm:0.151089835876;LEF1_TCF7_TCF7L1,2:0.150260205298;IKZF1:0.149389974638;MTE{core}:0.140132343247;GTF2I:0.13418208254;FOS_FOS{B,L1}_JUN{B,D}:0.123684617307;NKX2-1,4:0.122417446796;PPARG:0.117363524417;CDX1,2,4:0.109784762805;NFATC1..3:0.107029502729;TFAP2B:0.0996074023589;BACH2:0.0978714129088;HIC1:0.0958674143422;NFKB1_REL_RELA:0.0956508056933;RXR{A,B,G}:0.087537105184;GTF2A1,2:0.0781576725612;MYBL2:0.056451775007;SMAD1..7,9:0.0491849957067;ZBTB16:0.0442790744721;ZNF143:0.0381050140646;GCM1,2:0.0354695141055;ZBTB6:0.0250826971281;SPZ1:0.0232395329606;RFX1:0.0168830153868;RREB1:0.0069970022293;TFAP4:0.00649080944122;NRF1:-0.00111636812488;EP300:-0.00709239265906;HAND1,2:-0.0154946347818;NFE2L1:-0.0167968891475;HNF4A_NR2F1,2:-0.0235480840986;FOX{F1,F2,J1}:-0.0353616502708;MED-1{core}:-0.0441989638355;NKX3-2:-0.0562860699141;ZNF384:-0.0637193256638;HBP1_HMGB_SSRP1_UBTF:-0.065010949361;TLX1..3_NFIC{dimer}:-0.0658612814952;FOXN1:-0.066550167306;GLI1..3:-0.070517423349;HOX{A4,D4}:-0.0839009392567;NFE2:-0.0849281403618;NR6A1:-0.0860941130151;POU3F1..4:-0.0898161480153;ZNF423:-0.0929954397893;PRDM1:-0.102538154612;PRRX1,2:-0.107625447247;CUX2:-0.118042127807;MZF1:-0.119058681724;FOXD3:-0.119542124003;CRX:-0.120557142755;OCT4_SOX2{dimer}:-0.133414828816;IRF7:-0.149086249272;TAL1_TCF{3,4,12}:-0.149387551752;AHR_ARNT_ARNT2:-0.156209439454;T:-0.172728030888;PATZ1:-0.188164297655;ATF4:-0.191292711204;CDC5L:-0.201422405983;MEF2{A,B,C,D}:-0.211593299345;NHLH1,2:-0.213605691818;MYB:-0.217240779646;DBP:-0.218527129521;SOX{8,9,10}:-0.232012501729;ELK1,4_GABP{A,B1}:-0.232143613969;FOXO1,3,4:-0.240567212588;PAX4:-0.244988869457;PITX1..3:-0.258021273669;EGR1..3:-0.258331241917;PAX1,9:-0.267992643338;RFX2..5_RFXANK_RFXAP:-0.272926795541;HMGA1,2:-0.281110113876;STAT2,4,6:-0.293078809862;ETS1,2:-0.311482693036;XBP1:-0.319300778106;bHLH_family:-0.322529871525;HLF:-0.324779681435;GATA6:-0.32545399195;RUNX1..3:-0.325505153069;REST:-0.328625054763;NFIX:-0.34515498989;FOXP3:-0.34552750082;FOX{I1,J2}:-0.352970059251;TOPORS:-0.356441588484;ATF6:-0.370013938479;BPTF:-0.374134682406;CEBPA,B_DDIT3:-0.374965052056;FOXA2:-0.375706109122;MYFfamily:-0.389985234938;AR:-0.392077723665;SPI1:-0.409667720594;SREBF1,2:-0.411837040149;NANOG:-0.41349288953;FOXP1:-0.417837874215;POU5F1:-0.426120431772;PAX2:-0.43228909116;ELF1,2,4:-0.434695310208;IRF1,2:-0.438453203378;RBPJ:-0.458780450515;FOXL1:-0.486871164302;HIF1A:-0.488930602885;SPIB:-0.502087148576;HOX{A6,A7,B6,B7}:-0.531064306304;PAX6:-0.561930519534;IKZF2:-0.563369293579;ESR1:-0.572049301582;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.579955745267;CREB1:-0.600914032183;YY1:-0.602967840885;GATA4:-0.615536693338;HOXA9_MEIS1:-0.620228814878;FOXM1:-0.634559432775;NANOG{mouse}:-0.671857233484;BREu{core}:-0.676670199784;RORA:-0.686420565449;FOX{D1,D2}:-0.691330819398;SOX5:-0.70211847029;POU6F1:-0.70376277628;TLX2:-0.714001776576;TGIF1:-0.746999674592;ATF5_CREB3:-0.758589984656;HMX1:-0.78251144009;NR5A1,2:-0.804711699819;NKX2-2,8:-0.808263679005;NFIL3:-0.811904311134;DMAP1_NCOR{1,2}_SMARC:-0.818897573855;MAFB:-0.887023979517;PAX3,7:-0.90064460568;HES1:-0.920922651626;ZNF238:-1.01383999403;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.19966327545 | |top_motifs=XCPE1{core}:1.44554840762;HNF1A:1.39623936257;ZEB1:1.32839257716;TEF:1.25743588657;NKX2-3_NKX2-5:1.22297988728;TBX4,5:1.20776570255;ADNP_IRX_SIX_ZHX:1.19450079314;ALX1:1.16806090865;PAX8:1.15118660062;MYOD1:1.12318992524;SNAI1..3:1.11126780489;SOX2:1.09385871914;GZF1:1.05437152699;SP1:0.956969002015;FOXQ1:0.92591056561;POU1F1:0.787284634777;JUN:0.757006447876;VSX1,2:0.732388936207;ZNF148:0.709487743425;ONECUT1,2:0.657361998158;NKX3-1:0.627695482054;RXRA_VDR{dimer}:0.613742836085;LMO2:0.598763491501;GFI1:0.598170613763;NR3C1:0.588844321988;TFCP2:0.55580917633;PBX1:0.528717045173;NR1H4:0.528419727812;TEAD1:0.513620584825;EBF1:0.502750080649;EVI1:0.491883631803;FOSL2:0.472869143172;NKX6-1,2:0.461728472967;ESRRA:0.450555378086;STAT5{A,B}:0.449904443598;HOX{A5,B5}:0.446356136117;POU2F1..3:0.441249262679;ZIC1..3:0.439386484564;EN1,2:0.435258352509;AIRE:0.433415268546;PDX1:0.423305301183;KLF4:0.421622286565;PAX5:0.408726168196;ATF2:0.40326041702;LHX3,4:0.373788736423;TFDP1:0.367669009602;E2F1..5:0.336923221458;NFY{A,B,C}:0.323586208664;ARID5B:0.312889987987;ZFP161:0.305669335681;TP53:0.30375415969;MTF1:0.291297502545;MAZ:0.288893889831;SOX17:0.288351436612;SRF:0.280981763264;HSF1,2:0.269923375599;TFAP2{A,C}:0.258102933243;GFI1B:0.239786696497;STAT1,3:0.212702429576;NFE2L2:0.210829713907;ALX4:0.188587663861;TBP:0.155784478345;UFEwm:0.151089835876;LEF1_TCF7_TCF7L1,2:0.150260205298;IKZF1:0.149389974638;MTE{core}:0.140132343247;GTF2I:0.13418208254;FOS_FOS{B,L1}_JUN{B,D}:0.123684617307;NKX2-1,4:0.122417446796;PPARG:0.117363524417;CDX1,2,4:0.109784762805;NFATC1..3:0.107029502729;TFAP2B:0.0996074023589;BACH2:0.0978714129088;HIC1:0.0958674143422;NFKB1_REL_RELA:0.0956508056933;RXR{A,B,G}:0.087537105184;GTF2A1,2:0.0781576725612;MYBL2:0.056451775007;SMAD1..7,9:0.0491849957067;ZBTB16:0.0442790744721;ZNF143:0.0381050140646;GCM1,2:0.0354695141055;ZBTB6:0.0250826971281;SPZ1:0.0232395329606;RFX1:0.0168830153868;RREB1:0.0069970022293;TFAP4:0.00649080944122;NRF1:-0.00111636812488;EP300:-0.00709239265906;HAND1,2:-0.0154946347818;NFE2L1:-0.0167968891475;HNF4A_NR2F1,2:-0.0235480840986;FOX{F1,F2,J1}:-0.0353616502708;MED-1{core}:-0.0441989638355;NKX3-2:-0.0562860699141;ZNF384:-0.0637193256638;HBP1_HMGB_SSRP1_UBTF:-0.065010949361;TLX1..3_NFIC{dimer}:-0.0658612814952;FOXN1:-0.066550167306;GLI1..3:-0.070517423349;HOX{A4,D4}:-0.0839009392567;NFE2:-0.0849281403618;NR6A1:-0.0860941130151;POU3F1..4:-0.0898161480153;ZNF423:-0.0929954397893;PRDM1:-0.102538154612;PRRX1,2:-0.107625447247;CUX2:-0.118042127807;MZF1:-0.119058681724;FOXD3:-0.119542124003;CRX:-0.120557142755;OCT4_SOX2{dimer}:-0.133414828816;IRF7:-0.149086249272;TAL1_TCF{3,4,12}:-0.149387551752;AHR_ARNT_ARNT2:-0.156209439454;T:-0.172728030888;PATZ1:-0.188164297655;ATF4:-0.191292711204;CDC5L:-0.201422405983;MEF2{A,B,C,D}:-0.211593299345;NHLH1,2:-0.213605691818;MYB:-0.217240779646;DBP:-0.218527129521;SOX{8,9,10}:-0.232012501729;ELK1,4_GABP{A,B1}:-0.232143613969;FOXO1,3,4:-0.240567212588;PAX4:-0.244988869457;PITX1..3:-0.258021273669;EGR1..3:-0.258331241917;PAX1,9:-0.267992643338;RFX2..5_RFXANK_RFXAP:-0.272926795541;HMGA1,2:-0.281110113876;STAT2,4,6:-0.293078809862;ETS1,2:-0.311482693036;XBP1:-0.319300778106;bHLH_family:-0.322529871525;HLF:-0.324779681435;GATA6:-0.32545399195;RUNX1..3:-0.325505153069;REST:-0.328625054763;NFIX:-0.34515498989;FOXP3:-0.34552750082;FOX{I1,J2}:-0.352970059251;TOPORS:-0.356441588484;ATF6:-0.370013938479;BPTF:-0.374134682406;CEBPA,B_DDIT3:-0.374965052056;FOXA2:-0.375706109122;MYFfamily:-0.389985234938;AR:-0.392077723665;SPI1:-0.409667720594;SREBF1,2:-0.411837040149;NANOG:-0.41349288953;FOXP1:-0.417837874215;POU5F1:-0.426120431772;PAX2:-0.43228909116;ELF1,2,4:-0.434695310208;IRF1,2:-0.438453203378;RBPJ:-0.458780450515;FOXL1:-0.486871164302;HIF1A:-0.488930602885;SPIB:-0.502087148576;HOX{A6,A7,B6,B7}:-0.531064306304;PAX6:-0.561930519534;IKZF2:-0.563369293579;ESR1:-0.572049301582;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.579955745267;CREB1:-0.600914032183;YY1:-0.602967840885;GATA4:-0.615536693338;HOXA9_MEIS1:-0.620228814878;FOXM1:-0.634559432775;NANOG{mouse}:-0.671857233484;BREu{core}:-0.676670199784;RORA:-0.686420565449;FOX{D1,D2}:-0.691330819398;SOX5:-0.70211847029;POU6F1:-0.70376277628;TLX2:-0.714001776576;TGIF1:-0.746999674592;ATF5_CREB3:-0.758589984656;HMX1:-0.78251144009;NR5A1,2:-0.804711699819;NKX2-2,8:-0.808263679005;NFIL3:-0.811904311134;DMAP1_NCOR{1,2}_SMARC:-0.818897573855;MAFB:-0.887023979517;PAX3,7:-0.90064460568;HES1:-0.920922651626;ZNF238:-1.01383999403;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.19966327545 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11678-122H4;search_select_hide=table117:FF:11678-122H4 | |||
}} | }} | ||
Latest revision as of 18:14, 4 June 2020
| Name: | Renal Epithelial Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12732 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12732
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12732
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0645 |
| 10 | 10 | 0.00927 |
| 100 | 100 | 0.948 |
| 101 | 101 | 0.0443 |
| 102 | 102 | 0.458 |
| 103 | 103 | 0.796 |
| 104 | 104 | 0.786 |
| 105 | 105 | 0.944 |
| 106 | 106 | 0.805 |
| 107 | 107 | 0.0562 |
| 108 | 108 | 0.816 |
| 109 | 109 | 0.26 |
| 11 | 11 | 0.125 |
| 110 | 110 | 0.128 |
| 111 | 111 | 0.412 |
| 112 | 112 | 0.187 |
| 113 | 113 | 0.328 |
| 114 | 114 | 0.00112 |
| 115 | 115 | 0.236 |
| 116 | 116 | 0.245 |
| 117 | 117 | 0.0402 |
| 118 | 118 | 0.588 |
| 119 | 119 | 0.952 |
| 12 | 12 | 0.106 |
| 120 | 120 | 0.375 |
| 121 | 121 | 0.614 |
| 122 | 122 | 0.288 |
| 123 | 123 | 0.00788 |
| 124 | 124 | 0.125 |
| 125 | 125 | 0.439 |
| 126 | 126 | 0.731 |
| 127 | 127 | 0.306 |
| 128 | 128 | 0.741 |
| 129 | 129 | 0.132 |
| 13 | 13 | 0.703 |
| 130 | 130 | 0.21 |
| 131 | 131 | 0.205 |
| 132 | 132 | 0.15 |
| 133 | 133 | 0.0978 |
| 134 | 134 | 0.234 |
| 135 | 135 | 0.447 |
| 136 | 136 | 0.533 |
| 137 | 137 | 0.0945 |
| 138 | 138 | 0.217 |
| 139 | 139 | 3.36072e-4 |
| 14 | 14 | 0.782 |
| 140 | 140 | 0.264 |
| 141 | 141 | 0.244 |
| 142 | 142 | 0.445 |
| 143 | 143 | 0.629 |
| 144 | 144 | 0.919 |
| 145 | 145 | 0.831 |
| 146 | 146 | 0.248 |
| 147 | 147 | 0.477 |
| 148 | 148 | 0.119 |
| 149 | 149 | 0.678 |
| 15 | 15 | 0.418 |
| 150 | 150 | 0.971 |
| 151 | 151 | 0.526 |
| 152 | 152 | 0.0695 |
| 153 | 153 | 0.61 |
| 154 | 154 | 0.416 |
| 155 | 155 | 0.357 |
| 156 | 156 | 0.8 |
| 157 | 157 | 0.655 |
| 158 | 158 | 0.203 |
| 159 | 159 | 0.749 |
| 16 | 16 | 0.747 |
| 160 | 160 | 0.736 |
| 161 | 161 | 0.485 |
| 162 | 162 | 0.432 |
| 163 | 163 | 0.343 |
| 164 | 164 | 0.237 |
| 165 | 165 | 0.307 |
| 166 | 166 | 0.789 |
| 167 | 167 | 0.738 |
| 168 | 168 | 0.788 |
| 169 | 169 | 0.535 |
| 17 | 17 | 0.593 |
| 18 | 18 | 0.166 |
| 19 | 19 | 0.11 |
| 2 | 2 | 0.771 |
| 20 | 20 | 0.885 |
| 21 | 21 | 0.296 |
| 22 | 22 | 0.609 |
| 23 | 23 | 0.545 |
| 24 | 24 | 0.514 |
| 25 | 25 | 0.433 |
| 26 | 26 | 0.0996 |
| 27 | 27 | 0.871 |
| 28 | 28 | 0.789 |
| 29 | 29 | 0.634 |
| 3 | 3 | 0.164 |
| 30 | 30 | 0.0748 |
| 31 | 31 | 0.876 |
| 32 | 32 | 0.0172 |
| 33 | 33 | 0.195 |
| 34 | 34 | 0.509 |
| 35 | 35 | 0.00139 |
| 36 | 36 | 0.42 |
| 37 | 37 | 0.676 |
| 38 | 38 | 0.759 |
| 39 | 39 | 0.331 |
| 4 | 4 | 0.571 |
| 40 | 40 | 0.309 |
| 41 | 41 | 0.0415 |
| 42 | 42 | 0.344 |
| 43 | 43 | 0.162 |
| 44 | 44 | 0.347 |
| 45 | 45 | 0.391 |
| 46 | 46 | 0.0763 |
| 47 | 47 | 0.473 |
| 48 | 48 | 0.494 |
| 49 | 49 | 0.0343 |
| 5 | 5 | 0.302 |
| 50 | 50 | 0.421 |
| 51 | 51 | 0.946 |
| 52 | 52 | 0.618 |
| 53 | 53 | 0.181 |
| 54 | 54 | 0.834 |
| 55 | 55 | 0.0361 |
| 56 | 56 | 0.483 |
| 57 | 57 | 0.344 |
| 58 | 58 | 0.184 |
| 59 | 59 | 0.885 |
| 6 | 6 | 0.206 |
| 60 | 60 | 0.394 |
| 61 | 61 | 0.4 |
| 62 | 62 | 0.0482 |
| 63 | 63 | 0.934 |
| 64 | 64 | 0.2 |
| 65 | 65 | 0.548 |
| 66 | 66 | 0.133 |
| 67 | 67 | 0.325 |
| 68 | 68 | 0.0828 |
| 69 | 69 | 0.738 |
| 7 | 7 | 0.313 |
| 70 | 70 | 0.00382 |
| 71 | 71 | 0.0294 |
| 72 | 72 | 0.912 |
| 73 | 73 | 0.753 |
| 74 | 74 | 0.192 |
| 75 | 75 | 0.068 |
| 76 | 76 | 0.129 |
| 77 | 77 | 0.521 |
| 78 | 78 | 0.483 |
| 79 | 79 | 0.824 |
| 8 | 8 | 0.322 |
| 80 | 80 | 0.153 |
| 81 | 81 | 0.0406 |
| 82 | 82 | 0.0934 |
| 83 | 83 | 0.256 |
| 84 | 84 | 0.935 |
| 85 | 85 | 0.02 |
| 86 | 86 | 0.151 |
| 87 | 87 | 0.37 |
| 88 | 88 | 0.996 |
| 89 | 89 | 0.635 |
| 9 | 9 | 0.4 |
| 90 | 90 | 0.874 |
| 91 | 91 | 0.198 |
| 92 | 92 | 0.365 |
| 93 | 93 | 0.379 |
| 94 | 94 | 0.155 |
| 95 | 95 | 0.603 |
| 96 | 96 | 0.631 |
| 97 | 97 | 0.908 |
| 98 | 98 | 0.0191 |
| 99 | 99 | 0.0124 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12732
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
1000494 (nephron tubule epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
