FF:11594-120H1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004840 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004840 | ||
|accession_numbers=CAGE;DRX008431;DRR009303;DRZ000728;DRZ002113;DRZ012078;DRZ013463 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037039;DRR041405;DRZ007047 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000153 | |||
|comment=Previously: | |comment=Previously: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.14!180.30!SOX18;;chr8:10588010..10588030,-!p1@SOX7!1.90!78.92!SOX7;;chr21:39870339..39870443,-!p1@ERG!1.90!78.07!ERG;;chr17:46682321..46682362,-!p1@HOXB6!1.57!36.57!HOXB6;;chr8:55370487..55370503,+!p1@SOX17!1.53!32.83!SOX17;;chr5:71803177..71803255,-!p1@ZNF366!1.49!29.94!ZNF366;;chr17:6926362..6926377,+!p1@BCL6B!1.46!27.73!BCL6B;;chr10:94449703..94449718,+!p1@HHEX!1.45!101.55!HHEX;;chr19:13213511..13213545,-!p2@LYL1!1.38!25.17!LYL1;;chr6:34204921..34204939,+!p3@HMGA1!1.36!627.31!HMGA1;;chr17:46688334..46688385,-!p1@HOXB7!1.35!30.62!HOXB7;;chr17:46675558..46675577,-!p2@HOXB6!1.28!18.20!HOXB6;;chr9:124991204..124991246,-!p1@LHX6!1.28!18.20!LHX6;;chr16:86544113..86544145,+!p1@FOXF1!1.27!21.94!FOXF1;;chr12:96588368..96588394,+!p3@ELK3!1.25!45.07!ELK3;;chr17:46690839..46690884,-!p1@HOXB8!1.22!15.48!HOXB8;;chr17:46655672..46655697,-!p3@HOXB4!1.21!15.14!HOXB4;;chr2:177053386..177053402,+!p1@HOXD1!1.20!14.80!HOXD1;;chr1:6479968..6479986,-!p1@HES2!1.19!14.46!HES2;;chr20:590944..590960,-!p1@TCF15!1.19!14.46!TCF15;;chr19:13213662..13213686,-!p1@LYL1!1.16!19.73!LYL1;;chr4:57522166..57522260,-!p2@HOPX!1.13!14.46!HOPX;;chr18:53068911..53068935,-!p4@TCF4!1.12!13.61!TCF4;;chr17:1959369..1959388,+!p2@HIC1!1.09!30.11!HIC1;;chr20:50721803..50721857,-!p2@ZFP64!1.05!16.33!ZFP64;;chr19:46801639..46801699,+!p1@HIF3A!1.05!10.21!HIF3A;;chr17:46691732..46691766,-!p4@HOXB8!1.03!9.70!HOXB8;;chr3:128206762..128206781,-!p2@GATA2!1.00!57.66!GATA2;;chr19:13213399..13213414,-!p6@LYL1!0.98!8.50!LYL1;;chr2:176994408..176994492,+!p1@HOXD8!0.97!8.33!HOXD8;;chr20:42543441..42543497,+!p1@TOX2!0.95!37.08!TOX2;;chr20:42543506..42543549,+!p2@TOX2!0.94!19.22!TOX2;;chr15:37390850..37390909,-!p3@MEIS2!0.92!14.63!MEIS2;;chr17:46675420..46675465,-!p3@HOXB6!0.91!8.33!HOXB6;;chr15:96873984..96873999,+!p3@NR2F2!0.90!53.41!NR2F2;;chr4:57522598..57522664,-!p3@HOPX!0.89!6.80!HOPX;;chr10:31288370..31288393,-!p3@ZNF438!0.88!6.63!ZNF438;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.58!ZNF521;;chr17:46687959..46688007,-!p2@HOXB7!0.86!8.84!HOXB7;;chr14:74256787..74256858,-!p6@C14orf43!0.85!6.12!C14orf43;;chr17:46675586..46675600,-!p6@HOXB6!0.84!5.95!HOXB6;;chr1:47695003..47695042,-!p2@TAL1!0.84!5.95!TAL1;;chr2:46524537..46524553,+!p1@EPAS1!0.82!590.57!EPAS1;;chr17:46655704..46655718,-!p2@HOXB4!0.82!8.67!HOXB4;;chr10:94449675..94449694,+!p2@HHEX!0.81!15.48!HHEX;;chr6:34204672..34204692,+!p1@HMGA1!0.79!634.11!HMGA1;;chr12:3068544..3068597,+!p1@TEAD4!0.79!33.34!TEAD4;;chr12:66218212..66218244,+!p5@HMGA2!0.79!7.82!HMGA2;;chr17:46692457..46692484,-!p2@HOXB8!0.79!5.10!HOXB8;;chr15:37392616..37392638,-!p2@MEIS2!0.78!16.84!MEIS2;;chr15:67418047..67418093,+!p4@SMAD3!0.78!6.46!SMAD3;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.11!ETV4;;chr5:92918919..92918942,+!p1@NR2F1!0.75!22.79!NR2F1;;chr12:66218255..66218304,+!p3@HMGA2!0.75!13.27!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.75!9.36!HMGA2;;chr7:27205136..27205164,-!p1@HOXA9!0.75!4.59!HOXA9;;chr17:46675539..46675551,-!p7@HOXB6!0.75!4.59!HOXB6;;chr12:2986206..2986258,-!p2@FOXM1!0.74!30.11!FOXM1;;chr15:83953397..83953425,-!p1@BNC1!0.74!5.27!BNC1;;chr15:96874012..96874042,+!p2@NR2F2!0.72!43.20!NR2F2;;chr15:96874927..96874938,+!p8@NR2F2!0.72!9.87!NR2F2;;chr13:72441315..72441454,-!p1@DACH1!0.72!9.19!DACH1;;chr15:37392576..37392589,-!p12@MEIS2!0.72!5.27!MEIS2;;chr1:200008734..200008765,+!p2@NR5A2!0.72!4.25!NR5A2;;chr3:25469815..25469866,+!p3@RARB!0.72!4.25!RARB;;chr4:57522513..57522548,-!p4@HOPX!0.72!4.25!HOPX;;chr9:14314131..14314147,-!p2@NFIB!0.71!25.68!NFIB;;chr9:16705069..16705086,-!p3@BNC2!0.71!4.08!BNC2;;chr7:27196267..27196311,-!p1@HOXA7!0.71!4.08!HOXA7;;chr15:96873921..96873946,+!p1@NR2F2!0.70!129.27!NR2F2;;chr7:26191809..26191890,+!p1@NFE2L3!0.70!22.28!NFE2L3;;chr5:321810..321877,+!p1@AHRR!0.70!14.12!AHRR;;chr17:41623009..41623053,-!p4@ETV4!0.70!6.80!ETV4;;chr19:13213555..13213568,-!p5@LYL1!0.69!3.91!LYL1;;chr1:23885981..23886002,-!p1@ID3!0.68!761.51!ID3;;chr12:66218598..66218645,+!p2@HMGA2!0.68!19.90!HMGA2;;chr11:128563948..128564003,+!p1@FLI1!0.67!51.37!FLI1;;chr19:49865646..49865718,-!p1@TEAD2!0.67!36.23!TEAD2;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.78!ETV4;;chr15:96876966..96877017,+!p12@NR2F2!0.66!5.44!NR2F2;;chr7:27169801..27169844,-!p2@HOXA4!0.66!3.57!HOXA4;;chr1:47697539..47697573,-!p3@TAL1!0.66!3.57!TAL1;;chr17:46622070..46622109,-!p1@HOXB2!0.65!8.50!HOXB2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.64!282.87!TAX1BP3;;chr20:42295745..42295765,+!p1@MYBL2!0.64!64.30!MYBL2;;chr22:38597987..38598021,+!p2@MAFF!0.64!23.81!MAFF;;chr15:37392534..37392562,-!p10@MEIS2!0.64!3.74!MEIS2;;chr15:90544532..90544563,+!p1@ZNF710!0.63!7.31!ZNF710;;chr17:46622114..46622138,-!p4@HOXB2!0.63!5.44!HOXB2;;chr20:50159198..50159299,-!p1@NFATC2!0.63!5.10!NFATC2;;chr17:46692318..46692362,-!p5@HOXB8!0.63!3.23!HOXB8;;chr20:50179368..50179392,-!p2@NFATC2!0.62!4.25!NFATC2;;chr17:46659728..46659749,-!p3@HOXB3!0.61!3.06!HOXB3;;chr19:13213465..13213478,-!p7@LYL1!0.61!3.06!LYL1;;chr7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ATA2;;chr3:141087562..141087594,+!p12@ZBTB38!0.18!0.51!ZBTB38;;chr3:25469875..25469893,+!p5@RARB!0.18!0.51!RARB;;chr3:5022272..5022321,+!p7@BHLHE40!0.18!0.51!BHLHE40;;chr4:149363662..149363688,-!p6@NR3C2!0.18!0.51!NR3C2;;chr5:124082525..124082536,-!p10@ZNF608!0.18!0.51!ZNF608;;chr5:124082548..124082571,-!p9@ZNF608!0.18!0.51!ZNF608;;chr5:92919312..92919334,+!p13@NR2F1!0.18!0.51!NR2F1;;chr6:126070748..126070768,+!p2@HEY2!0.18!0.51!HEY2;;chr6:21597687..21597708,+!p14@SOX4!0.18!0.51!SOX4;;chr7:100076646..100076657,-!p10@TSC22D4!0.18!0.51!TSC22D4;;chr7:138665870..138665905,-!p4@KIAA1549!0.18!0.51!KIAA1549;;chr7:27153454..27153469,-!p2@HOXA3!0.18!0.51!HOXA3;;chr7:27190547..27190591,-!p1@HOXA6!0.18!0.51!HOXA6;;chr7:27224842..27224872,-!p1@HOXA11!0.18!0.51!HOXA11;;chr7:64342913..64342935,+!p2@ZNF273!0.18!0.51!ZNF273;;chr8:30891078..30891128,-!p2@PURG!0.18!0.51!PURG;;chr8:55370693..55370704,+!p4@SOX17!0.18!0.51!SOX17;;chr9:14083091..14083096,-!p12@NFIB!0.18!0.51!NFIB;;chr15:67430351..67430366,+!p10@SMAD3!0.18!0.51!SMAD3;;chr15:90294062..90294079,-!p2@MESP1!0.18!0.51!MESP1;;chr15:96869206..96869220,+!p21@NR2F2!0.18!0.51!NR2F2;;chr15:96880438..96880445,+!p23@NR2F2!0.18!0.51!NR2F2;;chr17:46682368..46682373,-!p12@HOXB6!0.18!0.51!HOXB6;;chr17:46692582..46692589,-!p14@HOXB8!0.18!0.51!HOXB8;;chr17:46703826..46703845,-!p3@HOXB9!0.18!0.51!HOXB9;;chr17:46703942..46703964,-!p4@HOXB9!0.18!0.51!HOXB9;;chr18:22932208..22932219,-!p6@ZNF521!0.18!0.51!ZNF521;;chr18:53177899..53177918,-!p33@TCF4!0.18!0.51!TCF4;;chr19:3381943..3381961,+!p8@NFIC!0.18!0.51!NFIC;;chr19:35454968..35454984,-!p3@ZNF792!0.18!0.51!ZNF792;;chr19:50434005..50434020,+!p10@ATF5!0.18!0.51!ATF5;;chr19:7584204..7584218,+!p9@ZNF358!0.18!0.51!ZNF358;;chr1:161014760..161014788,-!p4@USF1!0.18!0.51!USF1;;chr1:211433429..211433441,+!p14@RCOR3!0.18!0.51!RCOR3;;chr22:42229100..42229146,+!p1@SREBF2!0.17!133.69!SREBF2;;chr1:8938766..8938774,-!p2@ENO1!0.17!92.02!ENO1;;chr2:74374995..74375055,-!p1@BOLA3!0.17!59.02!BOLA3;;chr14:100705458..100705529,+!p1@YY1!0.17!40.48!YY1;;chr16:67876180..67876242,+!p1@THAP11!0.17!21.94!THAP11;;chr3:52001448..52001478,-!p2@PCBP4!0.17!18.03!PCBP4;;chr6:144329384..144329405,-!p1@PLAGL1!0.17!14.80!PLAGL1;;chr22:38598086..38598105,+!p1@MAFF!0.17!13.61!MAFF;;chr16:30418910..30418961,+!p1@ZNF771!0.17!9.36!ZNF771;;chr6:33422343..33422394,+!p1@ZBTB9!0.17!8.33!ZBTB9;;chr1:59249688..59249703,-!p3@JUN!0.17!7.31!JUN;;chr2:242576641..242576731,-!p2@THAP4!0.17!4.42!THAP4;;chr2:46524474..46524491,+!p4@EPAS1!0.17!2.38!EPAS1;;chr11:62369383..62369399,-!p6@MTA2!0.17!2.21!MTA2;;chr16:29818132..29818144,+!p12@MAZ!0.17!1.87!MAZ;;chr1:33004734..33004807,+!p2@ZBTB8A!0.17!1.70!ZBTB8A;;chr2:46524506..46524514,+!p5@EPAS1!0.17!1.70!EPAS1;;chr11:113930291..113930339,+!p2@ZBTB16!0.17!1.36!ZBTB16;;chr10:114711019..114711041,+!p7@TCF7L2!0.17!1.19!TCF7L2;;chr22:42269885..42269899,+!p4@SREBF2!0.17!1.19!SREBF2;;chr1:35657082..35657099,-!p8@SFPQ!0.17!1.19!SFPQ;;chr18:52989565..52989623,-!p9@TCF4!0.17!0.85!TCF4;;chr15:85144307..85144329,+!p2@ZSCAN2!0.17!0.68!ZSCAN2;;chr11:57103327..57103372,-!p1@SSRP1!0.16!62.08!SSRP1;;chr14:21566731..21566836,-!p1@ZNF219!0.16!13.44!ZNF219;;chr15:64752747..64752794,+!p1@ZNF609!0.16!10.89!ZNF609;;chr4:1873100..1873152,+!p1@WHSC1!0.16!9.36!WHSC1;;chr18:77160282..77160343,+!p2@NFATC1!0.16!7.48!NFATC1;;chr16:30583017..30583064,-!p1@ZNF688!0.16!5.95!ZNF688;;chr12:54772960..54773015,-!p3@ZNF385A!0.16!5.61!ZNF385A;;chr6:12011943..12012015,+!p2@HIVEP1!0.16!3.40!HIVEP1;;chr7:42276787..42276815,-!p1@GLI3!0.16!2.72!GLI3;;chr11:45168182..45168214,+!p1@ENST00000399269!0.16!2.72!PRDM11;;chr19:46271505..46271575,-!p2@SIX5!0.16!2.55!SIX5;;chrX:70315688..70315709,+!p1@FOXO4!0.16!2.21!FOXO4;;chr1:37940102..37940131,+!p2@ZC3H12A!0.16!1.87!ZC3H12A;;chr12:10875351..10875422,-!p4@CSDA!0.16!1.70!CSDA;;chr17:61920116..61920131,-!p5@SMARCD2!0.16!1.70!SMARCD2;;chr19:35455110..35455149,-!p1@ZNF792!0.16!1.70!ZNF792;;chr15:96869255..96869291,+!p6@NR2F2!0.16!1.53!NR2F2;;chr4:87857433..87857472,+!p9@AFF1!0.16!1.53!AFF1;;chr2:169312600..169312606,+!p2@CERS6!0.16!1.19!CERS6;;chr8:145159846..145159889,+!p6@MAF1!0.16!1.02!MAF1;;chr2:28616604..28616615,+!p6@FOSL2!0.16!0.85!FOSL2;;chr6:157099016..157099027,+!p13@ARID1B!0.16!0.68!ARID1B;;chr10:8095593..8095625,+!p3@GATA3!0.16!0.68!GATA3;;chr14:35873136..35873155,-!p9@NFKBIA!0.16!0.68!NFKBIA;;chr15:96869222..96869251,+!p18@NR2F2!0.16!0.68!NR2F2;;chr10:3827389..3827408,-!p1@KLF6!0.15!97.63!KLF6;;chr8:145515263..145515299,+!p1@HSF1!0.15!92.19!HSF1;;chr1:43148059..43148108,+!p1@YBX1!0.15!81.30!YBX1;;chr19:3572925..3573014,+!p1@HMG20B!0.15!36.74!HMG20B;;chr16:29817789..29817838,+!p2@MAZ!0.15!16.50!MAZ;;chr22:41601296..41601355,+!p1@L3MBTL2!0.15!14.29!L3MBTL2;;chr20:35201993..35202050,+!p1@TGIF2!0.15!13.78!TGIF2;;chr20:62601243..62601291,-!p1@ZNF512B!0.15!11.91!ZNF512B;;chr2:42795745..42795824,+!p1@MTA3!0.15!11.23!MTA3;;chr12:57916466..57916523,+!p2@MBD6!0.15!10.72!MBD6;;chr10:3827371..3827386,-!p2@KLF6!0.15!10.04!KLF6;;chr15:85144229..8514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| |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.14!180.30!SOX18;;chr8:10588010..10588030,-!p1@SOX7!1.90!78.92!SOX7;;chr21:39870339..39870443,-!p1@ERG!1.90!78.07!ERG;;chr17:46682321..46682362,-!p1@HOXB6!1.57!36.57!HOXB6;;chr8:55370487..55370503,+!p1@SOX17!1.53!32.83!SOX17;;chr5:71803177..71803255,-!p1@ZNF366!1.49!29.94!ZNF366;;chr17:6926362..6926377,+!p1@BCL6B!1.46!27.73!BCL6B;;chr10:94449703..94449718,+!p1@HHEX!1.45!101.55!HHEX;;chr19:13213511..13213545,-!p2@LYL1!1.38!25.17!LYL1;;chr6:34204921..34204939,+!p3@HMGA1!1.36!627.31!HMGA1;;chr17:46688334..46688385,-!p1@HOXB7!1.35!30.62!HOXB7;;chr17:46675558..46675577,-!p2@HOXB6!1.28!18.20!HOXB6;;chr9:124991204..124991246,-!p1@LHX6!1.28!18.20!LHX6;;chr16:86544113..86544145,+!p1@FOXF1!1.27!21.94!FOXF1;;chr12:96588368..96588394,+!p3@ELK3!1.25!45.07!ELK3;;chr17:46690839..46690884,-!p1@HOXB8!1.22!15.48!HOXB8;;chr17:46655672..46655697,-!p3@HOXB4!1.21!15.14!HOXB4;;chr2:177053386..177053402,+!p1@HOXD1!1.20!14.80!HOXD1;;chr1:6479968..6479986,-!p1@HES2!1.19!14.46!HES2;;chr20:590944..590960,-!p1@TCF15!1.19!14.46!TCF15;;chr19:13213662..13213686,-!p1@LYL1!1.16!19.73!LYL1;;chr4:57522166..57522260,-!p2@HOPX!1.13!14.46!HOPX;;chr18:53068911..53068935,-!p4@TCF4!1.12!13.61!TCF4;;chr17:1959369..1959388,+!p2@HIC1!1.09!30.11!HIC1;;chr20:50721803..50721857,-!p2@ZFP64!1.05!16.33!ZFP64;;chr19:46801639..46801699,+!p1@HIF3A!1.05!10.21!HIF3A;;chr17:46691732..46691766,-!p4@HOXB8!1.03!9.70!HOXB8;;chr3:128206762..128206781,-!p2@GATA2!1.00!57.66!GATA2;;chr19:13213399..13213414,-!p6@LYL1!0.98!8.50!LYL1;;chr2:176994408..176994492,+!p1@HOXD8!0.97!8.33!HOXD8;;chr20:42543441..42543497,+!p1@TOX2!0.95!37.08!TOX2;;chr20:42543506..42543549,+!p2@TOX2!0.94!19.22!TOX2;;chr15:37390850..37390909,-!p3@MEIS2!0.92!14.63!MEIS2;;chr17:46675420..46675465,-!p3@HOXB6!0.91!8.33!HOXB6;;chr15:96873984..96873999,+!p3@NR2F2!0.90!53.41!NR2F2;;chr4:57522598..57522664,-!p3@HOPX!0.89!6.80!HOPX;;chr10:31288370..31288393,-!p3@ZNF438!0.88!6.63!ZNF438;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.58!ZNF521;;chr17:46687959..46688007,-!p2@HOXB7!0.86!8.84!HOXB7;;chr14:74256787..74256858,-!p6@C14orf43!0.85!6.12!C14orf43;;chr17:46675586..46675600,-!p6@HOXB6!0.84!5.95!HOXB6;;chr1:47695003..47695042,-!p2@TAL1!0.84!5.95!TAL1;;chr2:46524537..46524553,+!p1@EPAS1!0.82!590.57!EPAS1;;chr17:46655704..46655718,-!p2@HOXB4!0.82!8.67!HOXB4;;chr10:94449675..94449694,+!p2@HHEX!0.81!15.48!HHEX;;chr6:34204672..34204692,+!p1@HMGA1!0.79!634.11!HMGA1;;chr12:3068544..3068597,+!p1@TEAD4!0.79!33.34!TEAD4;;chr12:66218212..66218244,+!p5@HMGA2!0.79!7.82!HMGA2;;chr17:46692457..46692484,-!p2@HOXB8!0.79!5.10!HOXB8;;chr15:37392616..37392638,-!p2@MEIS2!0.78!16.84!MEIS2;;chr15:67418047..67418093,+!p4@SMAD3!0.78!6.46!SMAD3;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.11!ETV4;;chr5:92918919..92918942,+!p1@NR2F1!0.75!22.79!NR2F1;;chr12:66218255..66218304,+!p3@HMGA2!0.75!13.27!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.75!9.36!HMGA2;;chr7:27205136..27205164,-!p1@HOXA9!0.75!4.59!HOXA9;;chr17:46675539..46675551,-!p7@HOXB6!0.75!4.59!HOXB6;;chr12:2986206..2986258,-!p2@FOXM1!0.74!30.11!FOXM1;;chr15:83953397..83953425,-!p1@BNC1!0.74!5.27!BNC1;;chr15:96874012..96874042,+!p2@NR2F2!0.72!43.20!NR2F2;;chr15:96874927..96874938,+!p8@NR2F2!0.72!9.87!NR2F2;;chr13:72441315..72441454,-!p1@DACH1!0.72!9.19!DACH1;;chr15:37392576..37392589,-!p12@MEIS2!0.72!5.27!MEIS2;;chr1:200008734..200008765,+!p2@NR5A2!0.72!4.25!NR5A2;;chr3:25469815..25469866,+!p3@RARB!0.72!4.25!RARB;;chr4:57522513..57522548,-!p4@HOPX!0.72!4.25!HOPX;;chr9:14314131..14314147,-!p2@NFIB!0.71!25.68!NFIB;;chr9:16705069..16705086,-!p3@BNC2!0.71!4.08!BNC2;;chr7:27196267..27196311,-!p1@HOXA7!0.71!4.08!HOXA7;;chr15:96873921..96873946,+!p1@NR2F2!0.70!129.27!NR2F2;;chr7:26191809..26191890,+!p1@NFE2L3!0.70!22.28!NFE2L3;;chr5:321810..321877,+!p1@AHRR!0.70!14.12!AHRR;;chr17:41623009..41623053,-!p4@ETV4!0.70!6.80!ETV4;;chr19:13213555..13213568,-!p5@LYL1!0.69!3.91!LYL1;;chr1:23885981..23886002,-!p1@ID3!0.68!761.51!ID3;;chr12:66218598..66218645,+!p2@HMGA2!0.68!19.90!HMGA2;;chr11:128563948..128564003,+!p1@FLI1!0.67!51.37!FLI1;;chr19:49865646..49865718,-!p1@TEAD2!0.67!36.23!TEAD2;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.78!ETV4;;chr15:96876966..96877017,+!p12@NR2F2!0.66!5.44!NR2F2;;chr7:27169801..27169844,-!p2@HOXA4!0.66!3.57!HOXA4;;chr1:47697539..47697573,-!p3@TAL1!0.66!3.57!TAL1;;chr17:46622070..46622109,-!p1@HOXB2!0.65!8.50!HOXB2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.64!282.87!TAX1BP3;;chr20:42295745..42295765,+!p1@MYBL2!0.64!64.30!MYBL2;;chr22:38597987..38598021,+!p2@MAFF!0.64!23.81!MAFF;;chr15:37392534..37392562,-!p10@MEIS2!0.64!3.74!MEIS2;;chr15:90544532..90544563,+!p1@ZNF710!0.63!7.31!ZNF710;;chr17:46622114..46622138,-!p4@HOXB2!0.63!5.44!HOXB2;;chr20:50159198..50159299,-!p1@NFATC2!0.63!5.10!NFATC2;;chr17:46692318..46692362,-!p5@HOXB8!0.63!3.23!HOXB8;;chr20:50179368..50179392,-!p2@NFATC2!0.62!4.25!NFATC2;;chr17:46659728..46659749,-!p3@HOXB3!0.61!3.06!HOXB3;;chr19:13213465..13213478,-!p7@LYL1!0.61!3.06!LYL1;;chr7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ATA2;;chr3:141087562..141087594,+!p12@ZBTB38!0.18!0.51!ZBTB38;;chr3:25469875..25469893,+!p5@RARB!0.18!0.51!RARB;;chr3:5022272..5022321,+!p7@BHLHE40!0.18!0.51!BHLHE40;;chr4:149363662..149363688,-!p6@NR3C2!0.18!0.51!NR3C2;;chr5:124082525..124082536,-!p10@ZNF608!0.18!0.51!ZNF608;;chr5:124082548..124082571,-!p9@ZNF608!0.18!0.51!ZNF608;;chr5:92919312..92919334,+!p13@NR2F1!0.18!0.51!NR2F1;;chr6:126070748..126070768,+!p2@HEY2!0.18!0.51!HEY2;;chr6:21597687..21597708,+!p14@SOX4!0.18!0.51!SOX4;;chr7:100076646..100076657,-!p10@TSC22D4!0.18!0.51!TSC22D4;;chr7:138665870..138665905,-!p4@KIAA1549!0.18!0.51!KIAA1549;;chr7:27153454..27153469,-!p2@HOXA3!0.18!0.51!HOXA3;;chr7:27190547..27190591,-!p1@HOXA6!0.18!0.51!HOXA6;;chr7:27224842..27224872,-!p1@HOXA11!0.18!0.51!HOXA11;;chr7:64342913..64342935,+!p2@ZNF273!0.18!0.51!ZNF273;;chr8:30891078..30891128,-!p2@PURG!0.18!0.51!PURG;;chr8:55370693..55370704,+!p4@SOX17!0.18!0.51!SOX17;;chr9:14083091..14083096,-!p12@NFIB!0.18!0.51!NFIB;;chr15:67430351..67430366,+!p10@SMAD3!0.18!0.51!SMAD3;;chr15:90294062..90294079,-!p2@MESP1!0.18!0.51!MESP1;;chr15:96869206..96869220,+!p21@NR2F2!0.18!0.51!NR2F2;;chr15:96880438..96880445,+!p23@NR2F2!0.18!0.51!NR2F2;;chr17:46682368..46682373,-!p12@HOXB6!0.18!0.51!HOXB6;;chr17:46692582..46692589,-!p14@HOXB8!0.18!0.51!HOXB8;;chr17:46703826..46703845,-!p3@HOXB9!0.18!0.51!HOXB9;;chr17:46703942..46703964,-!p4@HOXB9!0.18!0.51!HOXB9;;chr18:22932208..22932219,-!p6@ZNF521!0.18!0.51!ZNF521;;chr18:53177899..53177918,-!p33@TCF4!0.18!0.51!TCF4;;chr19:3381943..3381961,+!p8@NFIC!0.18!0.51!NFIC;;chr19:35454968..35454984,-!p3@ZNF792!0.18!0.51!ZNF792;;chr19:50434005..50434020,+!p10@ATF5!0.18!0.51!ATF5;;chr19:7584204..7584218,+!p9@ZNF358!0.18!0.51!ZNF358;;chr1:161014760..161014788,-!p4@USF1!0.18!0.51!USF1;;chr1:211433429..211433441,+!p14@RCOR3!0.18!0.51!RCOR3;;chr22:42229100..42229146,+!p1@SREBF2!0.17!133.69!SREBF2;;chr1:8938766..8938774,-!p2@ENO1!0.17!92.02!ENO1;;chr2:74374995..74375055,-!p1@BOLA3!0.17!59.02!BOLA3;;chr14:100705458..100705529,+!p1@YY1!0.17!40.48!YY1;;chr16:67876180..67876242,+!p1@THAP11!0.17!21.94!THAP11;;chr3:52001448..52001478,-!p2@PCBP4!0.17!18.03!PCBP4;;chr6:144329384..144329405,-!p1@PLAGL1!0.17!14.80!PLAGL1;;chr22:38598086..38598105,+!p1@MAFF!0.17!13.61!MAFF;;chr16:30418910..30418961,+!p1@ZNF771!0.17!9.36!ZNF771;;chr6:33422343..33422394,+!p1@ZBTB9!0.17!8.33!ZBTB9;;chr1:59249688..59249703,-!p3@JUN!0.17!7.31!JUN;;chr2:242576641..242576731,-!p2@THAP4!0.17!4.42!THAP4;;chr2:46524474..46524491,+!p4@EPAS1!0.17!2.38!EPAS1;;chr11:62369383..62369399,-!p6@MTA2!0.17!2.21!MTA2;;chr16:29818132..29818144,+!p12@MAZ!0.17!1.87!MAZ;;chr1:33004734..33004807,+!p2@ZBTB8A!0.17!1.70!ZBTB8A;;chr2:46524506..46524514,+!p5@EPAS1!0.17!1.70!EPAS1;;chr11:113930291..113930339,+!p2@ZBTB16!0.17!1.36!ZBTB16;;chr10:114711019..114711041,+!p7@TCF7L2!0.17!1.19!TCF7L2;;chr22:42269885..42269899,+!p4@SREBF2!0.17!1.19!SREBF2;;chr1:35657082..35657099,-!p8@SFPQ!0.17!1.19!SFPQ;;chr18:52989565..52989623,-!p9@TCF4!0.17!0.85!TCF4;;chr15:85144307..85144329,+!p2@ZSCAN2!0.17!0.68!ZSCAN2;;chr11:57103327..57103372,-!p1@SSRP1!0.16!62.08!SSRP1;;chr14:21566731..21566836,-!p1@ZNF219!0.16!13.44!ZNF219;;chr15:64752747..64752794,+!p1@ZNF609!0.16!10.89!ZNF609;;chr4:1873100..1873152,+!p1@WHSC1!0.16!9.36!WHSC1;;chr18:77160282..77160343,+!p2@NFATC1!0.16!7.48!NFATC1;;chr16:30583017..30583064,-!p1@ZNF688!0.16!5.95!ZNF688;;chr12:54772960..54773015,-!p3@ZNF385A!0.16!5.61!ZNF385A;;chr6:12011943..12012015,+!p2@HIVEP1!0.16!3.40!HIVEP1;;chr7:42276787..42276815,-!p1@GLI3!0.16!2.72!GLI3;;chr11:45168182..45168214,+!p1@ENST00000399269!0.16!2.72!PRDM11;;chr19:46271505..46271575,-!p2@SIX5!0.16!2.55!SIX5;;chrX:70315688..70315709,+!p1@FOXO4!0.16!2.21!FOXO4;;chr1:37940102..37940131,+!p2@ZC3H12A!0.16!1.87!ZC3H12A;;chr12:10875351..10875422,-!p4@CSDA!0.16!1.70!CSDA;;chr17:61920116..61920131,-!p5@SMARCD2!0.16!1.70!SMARCD2;;chr19:35455110..35455149,-!p1@ZNF792!0.16!1.70!ZNF792;;chr15:96869255..96869291,+!p6@NR2F2!0.16!1.53!NR2F2;;chr4:87857433..87857472,+!p9@AFF1!0.16!1.53!AFF1;;chr2:169312600..169312606,+!p2@CERS6!0.16!1.19!CERS6;;chr8:145159846..145159889,+!p6@MAF1!0.16!1.02!MAF1;;chr2:28616604..28616615,+!p6@FOSL2!0.16!0.85!FOSL2;;chr6:157099016..157099027,+!p13@ARID1B!0.16!0.68!ARID1B;;chr10:8095593..8095625,+!p3@GATA3!0.16!0.68!GATA3;;chr14:35873136..35873155,-!p9@NFKBIA!0.16!0.68!NFKBIA;;chr15:96869222..96869251,+!p18@NR2F2!0.16!0.68!NR2F2;;chr10:3827389..3827408,-!p1@KLF6!0.15!97.63!KLF6;;chr8:145515263..145515299,+!p1@HSF1!0.15!92.19!HSF1;;chr1:43148059..43148108,+!p1@YBX1!0.15!81.30!YBX1;;chr19:3572925..3573014,+!p1@HMG20B!0.15!36.74!HMG20B;;chr16:29817789..29817838,+!p2@MAZ!0.15!16.50!MAZ;;chr22:41601296..41601355,+!p1@L3MBTL2!0.15!14.29!L3MBTL2;;chr20:35201993..35202050,+!p1@TGIF2!0.15!13.78!TGIF2;;chr20:62601243..62601291,-!p1@ZNF512B!0.15!11.91!ZNF512B;;chr2:42795745..42795824,+!p1@MTA3!0.15!11.23!MTA3;;chr12:57916466..57916523,+!p2@MBD6!0.15!10.72!MBD6;;chr10:3827371..3827386,-!p2@KLF6!0.15!10.04!KLF6;;chr15:85144229..8514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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009201 | |||
|ffid_belonging_in_development=CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor2.CNhs12086.11594-120H1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor2.CNhs12086.11594-120H1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor2.CNhs12086.11594-120H1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor2.CNhs12086.11594-120H1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor2.CNhs12086.11594-120H1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11594-120H1 | |id=FF:11594-120H1 | ||
|is_a=EFO:0002091;;FF:0000153 | |is_a=EFO:0002091;;FF:0000153 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12086 | |||
|library_id_phase_based=2:CNhs12086 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11594 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GATCAG.11594 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11594 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GATCAG.11594 | |||
|name=Renal Glomerular Endothelial Cells, donor2 | |name=Renal Glomerular Endothelial Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12086,LSID838,release011,COMPLETED | |profile_hcage=CNhs12086,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC4005 | |rna_catalog_number=SC4005 | ||
| Line 58: | Line 82: | ||
|rna_tube_id=120H1 | |rna_tube_id=120H1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.GATCAG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=RXR{A,B,G}:1.57600352229;SOX{8,9,10}:1.57211076323;FOX{I1,J2}:1.34806270059;TLX1..3_NFIC{dimer}:1.1999240905;NR5A1,2:1.10724659055;ESRRA:1.01952809194;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.924176339997;XCPE1{core}:0.879081520807;PBX1:0.850265443343;HES1:0.822329785222;TP53:0.81965961958;AR:0.815411399944;GZF1:0.813084678989;bHLH_family:0.792662324373;TFAP2{A,C}:0.781003565507;NFATC1..3:0.729677065604;IKZF2:0.694342242277;ZNF148:0.644920580131;ZNF423:0.632737329131;PAX6:0.63113124046;ETS1,2:0.622408174269;ZBTB6:0.615387845416;IKZF1:0.59494966802;ONECUT1,2:0.594106530229;ARID5B:0.587443219429;GATA6:0.554456113461;EBF1:0.534536371791;TFAP4:0.530027179514;ZIC1..3:0.516453904274;LEF1_TCF7_TCF7L1,2:0.431945780217;PAX1,9:0.412751625503;GFI1:0.381397600587;SPZ1:0.374456839316;SPIB:0.369946370739;ELF1,2,4:0.335839296194;HIC1:0.321331230977;GTF2A1,2:0.306082388809;HNF4A_NR2F1,2:0.299933673908;NR3C1:0.295157113094;STAT2,4,6:0.294776226553;UFEwm:0.276877925548;TFCP2:0.269511077546;FOXL1:0.265509068224;SMAD1..7,9:0.261281480998;FOXQ1:0.240697781771;SOX2:0.229130196357;TFDP1:0.225351086286;NFE2:0.224367582991;BACH2:0.20956789795;PAX5:0.206375696052;SP1:0.190297731694;HOX{A5,B5}:0.1683220296;MYB:0.159756065776;NFY{A,B,C}:0.158151128123;NKX2-3_NKX2-5:0.154588075805;GFI1B:0.142544709807;REST:0.141967886908;TEAD1:0.140678803105;MYOD1:0.139939430435;TFAP2B:0.139105079824;ALX1:0.13391497049;TAL1_TCF{3,4,12}:0.107589386772;POU6F1:0.102318512931;POU1F1:0.097754671899;ZFP161:0.0974918172206;CRX:0.0807354421814;FOSL2:0.0577245303374;PPARG:0.0541447042705;GLI1..3:0.0529404192664;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0481499410147;PITX1..3:0.0446883358;MTE{core}:0.0420437209802;SOX5:0.0380142152484;RXRA_VDR{dimer}:0.0359881934358;HAND1,2:0.0355259593882;SOX17:0.0332183218369;FOXD3:0.0285238692883;FOXM1:0.0242815602937;NFE2L1:0.0205839225658;FOS_FOS{B,L1}_JUN{B,D}:0.016139528686;SPI1:0.0132012182595;LMO2:-0.00120530927897;POU3F1..4:-0.0116409606495;ZNF238:-0.0154768797809;PAX8:-0.0336167817667;NFE2L2:-0.0386265834985;RBPJ:-0.0621718622801;E2F1..5:-0.0699375700785;YY1:-0.0740102580611;NKX2-2,8:-0.10663298335;ESR1:-0.121429226595;ZNF143:-0.160272903152;SRF:-0.162458028907;NRF1:-0.169187576705;MTF1:-0.169343874324;LHX3,4:-0.172892669471;TBP:-0.173388855641;NFKB1_REL_RELA:-0.174891228901;NANOG:-0.181719040331;POU2F1..3:-0.184275748155;HBP1_HMGB_SSRP1_UBTF:-0.204073979929;GATA4:-0.209117841441;NANOG{mouse}:-0.209949234722;ADNP_IRX_SIX_ZHX:-0.255627473543;HNF1A:-0.263077363344;HOX{A6,A7,B6,B7}:-0.270087380905;MED-1{core}:-0.284110994256;HOXA9_MEIS1:-0.286306823705;MEF2{A,B,C,D}:-0.306582891878;PAX2:-0.309033190841;NR6A1:-0.31806898182;RFX1:-0.318941287375;CUX2:-0.334059919108;EP300:-0.342644721119;KLF4:-0.345906704382;DMAP1_NCOR{1,2}_SMARC:-0.347798443824;SNAI1..3:-0.354765997941;GTF2I:-0.356541635116;NHLH1,2:-0.359583207422;IRF1,2:-0.377359386337;EN1,2:-0.403614819532;NKX3-2:-0.405926027778;PATZ1:-0.415430454242;GCM1,2:-0.437778826057;RORA:-0.440028108598;RREB1:-0.453864412755;VSX1,2:-0.460398800524;MZF1:-0.469783903428;ATF6:-0.47826436448;XBP1:-0.479566695747;CDC5L:-0.497132329788;CREB1:-0.504421727786;POU5F1:-0.508170962328;ALX4:-0.517457283847;HMX1:-0.532825702603;ATF2:-0.535213879084;MAZ:-0.540973446211;TBX4,5:-0.54240286306;FOX{D1,D2}:-0.545707981404;FOXP3:-0.552534883022;PAX3,7:-0.568587265608;SREBF1,2:-0.582843130396;EGR1..3:-0.585592415172;EVI1:-0.591514152493;HLF:-0.59192055851;FOXP1:-0.598451574871;T:-0.601839873681;STAT5{A,B}:-0.607131385182;FOX{F1,F2,J1}:-0.609332613791;PRRX1,2:-0.615477617409;PRDM1:-0.6402763675;FOXA2:-0.650958075079;MAFB:-0.661376964682;CEBPA,B_DDIT3:-0.666203612124;TEF:-0.66677032218;RUNX1..3:-0.678957939995;OCT4_SOX2{dimer}:-0.698507126059;JUN:-0.712438192977;TOPORS:-0.727119191309;AIRE:-0.740634552995;NR1H4:-0.742125150067;BREu{core}:-0.743464800925;STAT1,3:-0.754942755922;PAX4:-0.782607045816;ZEB1:-0.821674065898;BPTF:-0.823777314652;NFIX:-0.845952550982;DBP:-0.857003514708;MYFfamily:-0.858551312261;IRF7:-0.860559122657;TGIF1:-0.882878957599;NKX2-1,4:-0.889998793847;ELK1,4_GABP{A,B1}:-0.890117565456;PDX1:-0.901384617687;HIF1A:-0.93103711131;MYBL2:-0.94150022366;AHR_ARNT_ARNT2:-0.949198149985;HOX{A4,D4}:-0.966599382514;HSF1,2:-1.00074760399;TLX2:-1.0057655062;NKX3-1:-1.01515640604;FOXO1,3,4:-1.05044042253;ZNF384:-1.05462669012;HMGA1,2:-1.07748084921;ATF5_CREB3:-1.08056681357;ZBTB16:-1.10967361699;NFIL3:-1.17368568773;RFX2..5_RFXANK_RFXAP:-1.18863492257;CDX1,2,4:-1.23547450452;FOXN1:-1.24824640502;ATF4:-1.26839056193;NKX6-1,2:-1.44823188906 | |top_motifs=RXR{A,B,G}:1.57600352229;SOX{8,9,10}:1.57211076323;FOX{I1,J2}:1.34806270059;TLX1..3_NFIC{dimer}:1.1999240905;NR5A1,2:1.10724659055;ESRRA:1.01952809194;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.924176339997;XCPE1{core}:0.879081520807;PBX1:0.850265443343;HES1:0.822329785222;TP53:0.81965961958;AR:0.815411399944;GZF1:0.813084678989;bHLH_family:0.792662324373;TFAP2{A,C}:0.781003565507;NFATC1..3:0.729677065604;IKZF2:0.694342242277;ZNF148:0.644920580131;ZNF423:0.632737329131;PAX6:0.63113124046;ETS1,2:0.622408174269;ZBTB6:0.615387845416;IKZF1:0.59494966802;ONECUT1,2:0.594106530229;ARID5B:0.587443219429;GATA6:0.554456113461;EBF1:0.534536371791;TFAP4:0.530027179514;ZIC1..3:0.516453904274;LEF1_TCF7_TCF7L1,2:0.431945780217;PAX1,9:0.412751625503;GFI1:0.381397600587;SPZ1:0.374456839316;SPIB:0.369946370739;ELF1,2,4:0.335839296194;HIC1:0.321331230977;GTF2A1,2:0.306082388809;HNF4A_NR2F1,2:0.299933673908;NR3C1:0.295157113094;STAT2,4,6:0.294776226553;UFEwm:0.276877925548;TFCP2:0.269511077546;FOXL1:0.265509068224;SMAD1..7,9:0.261281480998;FOXQ1:0.240697781771;SOX2:0.229130196357;TFDP1:0.225351086286;NFE2:0.224367582991;BACH2:0.20956789795;PAX5:0.206375696052;SP1:0.190297731694;HOX{A5,B5}:0.1683220296;MYB:0.159756065776;NFY{A,B,C}:0.158151128123;NKX2-3_NKX2-5:0.154588075805;GFI1B:0.142544709807;REST:0.141967886908;TEAD1:0.140678803105;MYOD1:0.139939430435;TFAP2B:0.139105079824;ALX1:0.13391497049;TAL1_TCF{3,4,12}:0.107589386772;POU6F1:0.102318512931;POU1F1:0.097754671899;ZFP161:0.0974918172206;CRX:0.0807354421814;FOSL2:0.0577245303374;PPARG:0.0541447042705;GLI1..3:0.0529404192664;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0481499410147;PITX1..3:0.0446883358;MTE{core}:0.0420437209802;SOX5:0.0380142152484;RXRA_VDR{dimer}:0.0359881934358;HAND1,2:0.0355259593882;SOX17:0.0332183218369;FOXD3:0.0285238692883;FOXM1:0.0242815602937;NFE2L1:0.0205839225658;FOS_FOS{B,L1}_JUN{B,D}:0.016139528686;SPI1:0.0132012182595;LMO2:-0.00120530927897;POU3F1..4:-0.0116409606495;ZNF238:-0.0154768797809;PAX8:-0.0336167817667;NFE2L2:-0.0386265834985;RBPJ:-0.0621718622801;E2F1..5:-0.0699375700785;YY1:-0.0740102580611;NKX2-2,8:-0.10663298335;ESR1:-0.121429226595;ZNF143:-0.160272903152;SRF:-0.162458028907;NRF1:-0.169187576705;MTF1:-0.169343874324;LHX3,4:-0.172892669471;TBP:-0.173388855641;NFKB1_REL_RELA:-0.174891228901;NANOG:-0.181719040331;POU2F1..3:-0.184275748155;HBP1_HMGB_SSRP1_UBTF:-0.204073979929;GATA4:-0.209117841441;NANOG{mouse}:-0.209949234722;ADNP_IRX_SIX_ZHX:-0.255627473543;HNF1A:-0.263077363344;HOX{A6,A7,B6,B7}:-0.270087380905;MED-1{core}:-0.284110994256;HOXA9_MEIS1:-0.286306823705;MEF2{A,B,C,D}:-0.306582891878;PAX2:-0.309033190841;NR6A1:-0.31806898182;RFX1:-0.318941287375;CUX2:-0.334059919108;EP300:-0.342644721119;KLF4:-0.345906704382;DMAP1_NCOR{1,2}_SMARC:-0.347798443824;SNAI1..3:-0.354765997941;GTF2I:-0.356541635116;NHLH1,2:-0.359583207422;IRF1,2:-0.377359386337;EN1,2:-0.403614819532;NKX3-2:-0.405926027778;PATZ1:-0.415430454242;GCM1,2:-0.437778826057;RORA:-0.440028108598;RREB1:-0.453864412755;VSX1,2:-0.460398800524;MZF1:-0.469783903428;ATF6:-0.47826436448;XBP1:-0.479566695747;CDC5L:-0.497132329788;CREB1:-0.504421727786;POU5F1:-0.508170962328;ALX4:-0.517457283847;HMX1:-0.532825702603;ATF2:-0.535213879084;MAZ:-0.540973446211;TBX4,5:-0.54240286306;FOX{D1,D2}:-0.545707981404;FOXP3:-0.552534883022;PAX3,7:-0.568587265608;SREBF1,2:-0.582843130396;EGR1..3:-0.585592415172;EVI1:-0.591514152493;HLF:-0.59192055851;FOXP1:-0.598451574871;T:-0.601839873681;STAT5{A,B}:-0.607131385182;FOX{F1,F2,J1}:-0.609332613791;PRRX1,2:-0.615477617409;PRDM1:-0.6402763675;FOXA2:-0.650958075079;MAFB:-0.661376964682;CEBPA,B_DDIT3:-0.666203612124;TEF:-0.66677032218;RUNX1..3:-0.678957939995;OCT4_SOX2{dimer}:-0.698507126059;JUN:-0.712438192977;TOPORS:-0.727119191309;AIRE:-0.740634552995;NR1H4:-0.742125150067;BREu{core}:-0.743464800925;STAT1,3:-0.754942755922;PAX4:-0.782607045816;ZEB1:-0.821674065898;BPTF:-0.823777314652;NFIX:-0.845952550982;DBP:-0.857003514708;MYFfamily:-0.858551312261;IRF7:-0.860559122657;TGIF1:-0.882878957599;NKX2-1,4:-0.889998793847;ELK1,4_GABP{A,B1}:-0.890117565456;PDX1:-0.901384617687;HIF1A:-0.93103711131;MYBL2:-0.94150022366;AHR_ARNT_ARNT2:-0.949198149985;HOX{A4,D4}:-0.966599382514;HSF1,2:-1.00074760399;TLX2:-1.0057655062;NKX3-1:-1.01515640604;FOXO1,3,4:-1.05044042253;ZNF384:-1.05462669012;HMGA1,2:-1.07748084921;ATF5_CREB3:-1.08056681357;ZBTB16:-1.10967361699;NFIL3:-1.17368568773;RFX2..5_RFXANK_RFXAP:-1.18863492257;CDX1,2,4:-1.23547450452;FOXN1:-1.24824640502;ATF4:-1.26839056193;NKX6-1,2:-1.44823188906 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11594-120H1;search_select_hide=table117:FF:11594-120H1 | |||
}} | }} | ||
Latest revision as of 18:10, 4 June 2020
| Name: | Renal Glomerular Endothelial Cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12086 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12086
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12086
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.413 |
| 10 | 10 | 0.849 |
| 100 | 100 | 0.497 |
| 101 | 101 | 0.174 |
| 102 | 102 | 0.577 |
| 103 | 103 | 0.628 |
| 104 | 104 | 0.994 |
| 105 | 105 | 0.811 |
| 106 | 106 | 0.226 |
| 107 | 107 | 0.0438 |
| 108 | 108 | 0.295 |
| 109 | 109 | 0.092 |
| 11 | 11 | 0.0254 |
| 110 | 110 | 0.0192 |
| 111 | 111 | 0.275 |
| 112 | 112 | 0.259 |
| 113 | 113 | 0.829 |
| 114 | 114 | 0.333 |
| 115 | 115 | 0.564 |
| 116 | 116 | 0.447 |
| 117 | 117 | 0.52 |
| 118 | 118 | 0.275 |
| 119 | 119 | 0.31 |
| 12 | 12 | 0.319 |
| 120 | 120 | 0.0215 |
| 121 | 121 | 0.761 |
| 122 | 122 | 0.994 |
| 123 | 123 | 0.0704 |
| 124 | 124 | 0.185 |
| 125 | 125 | 0.833 |
| 126 | 126 | 0.675 |
| 127 | 127 | 0.984 |
| 128 | 128 | 0.45 |
| 129 | 129 | 0.0691 |
| 13 | 13 | 0.247 |
| 130 | 130 | 0.991 |
| 131 | 131 | 0.0956 |
| 132 | 132 | 0.108 |
| 133 | 133 | 0.498 |
| 134 | 134 | 0.867 |
| 135 | 135 | 0.0567 |
| 136 | 136 | 0.101 |
| 137 | 137 | 0.447 |
| 138 | 138 | 0.992 |
| 139 | 139 | 0.793 |
| 14 | 14 | 0.981 |
| 140 | 140 | 0.3 |
| 141 | 141 | 0.518 |
| 142 | 142 | 0.908 |
| 143 | 143 | 0.0872 |
| 144 | 144 | 0.407 |
| 145 | 145 | 0.291 |
| 146 | 146 | 0.35 |
| 147 | 147 | 0.163 |
| 148 | 148 | 0.328 |
| 149 | 149 | 0.036 |
| 15 | 15 | 0.676 |
| 150 | 150 | 0.233 |
| 151 | 151 | 0.661 |
| 152 | 152 | 0.0631 |
| 153 | 153 | 0.066 |
| 154 | 154 | 0.321 |
| 155 | 155 | 0.836 |
| 156 | 156 | 0.194 |
| 157 | 157 | 0.508 |
| 158 | 158 | 0.453 |
| 159 | 159 | 0.327 |
| 16 | 16 | 0.65 |
| 160 | 160 | 0.00593 |
| 161 | 161 | 0.701 |
| 162 | 162 | 0.248 |
| 163 | 163 | 0.701 |
| 164 | 164 | 0.419 |
| 165 | 165 | 0.369 |
| 166 | 166 | 0.0765 |
| 167 | 167 | 0.202 |
| 168 | 168 | 0.343 |
| 169 | 169 | 0.0334 |
| 17 | 17 | 0.112 |
| 18 | 18 | 0.853 |
| 19 | 19 | 0.161 |
| 2 | 2 | 0.351 |
| 20 | 20 | 0.611 |
| 21 | 21 | 0.663 |
| 22 | 22 | 0.097 |
| 23 | 23 | 0.23 |
| 24 | 24 | 0.708 |
| 25 | 25 | 0.72 |
| 26 | 26 | 0.168 |
| 27 | 27 | 0.114 |
| 28 | 28 | 0.254 |
| 29 | 29 | 0.502 |
| 3 | 3 | 0.567 |
| 30 | 30 | 0.826 |
| 31 | 31 | 0.911 |
| 32 | 32 | 0.866 |
| 33 | 33 | 0.348 |
| 34 | 34 | 0.0424 |
| 35 | 35 | 0.873 |
| 36 | 36 | 0.0768 |
| 37 | 37 | 0.166 |
| 38 | 38 | 0.237 |
| 39 | 39 | 0.284 |
| 4 | 4 | 0.927 |
| 40 | 40 | 0.00422 |
| 41 | 41 | 0.0456 |
| 42 | 42 | 0.668 |
| 43 | 43 | 0.417 |
| 44 | 44 | 0.281 |
| 45 | 45 | 0.274 |
| 46 | 46 | 0.162 |
| 47 | 47 | 0.228 |
| 48 | 48 | 0.0374 |
| 49 | 49 | 0.796 |
| 5 | 5 | 0.967 |
| 50 | 50 | 0.452 |
| 51 | 51 | 0.37 |
| 52 | 52 | 0.696 |
| 53 | 53 | 0.779 |
| 54 | 54 | 0.536 |
| 55 | 55 | 0.759 |
| 56 | 56 | 0.478 |
| 57 | 57 | 0.31 |
| 58 | 58 | 0.412 |
| 59 | 59 | 0.0236 |
| 6 | 6 | 0.458 |
| 60 | 60 | 0.785 |
| 61 | 61 | 0.562 |
| 62 | 62 | 0.859 |
| 63 | 63 | 0.261 |
| 64 | 64 | 0.161 |
| 65 | 65 | 0.103 |
| 66 | 66 | 0.526 |
| 67 | 67 | 0.373 |
| 68 | 68 | 0.0802 |
| 69 | 69 | 0.343 |
| 7 | 7 | 0.724 |
| 70 | 70 | 0.681 |
| 71 | 71 | 0.336 |
| 72 | 72 | 0.454 |
| 73 | 73 | 0.00962 |
| 74 | 74 | 0.478 |
| 75 | 75 | 0.157 |
| 76 | 76 | 0.434 |
| 77 | 77 | 0.0311 |
| 78 | 78 | 0.551 |
| 79 | 79 | 0.101 |
| 8 | 8 | 0.0159 |
| 80 | 80 | 0.764 |
| 81 | 81 | 0.596 |
| 82 | 82 | 0.609 |
| 83 | 83 | 0.949 |
| 84 | 84 | 0.112 |
| 85 | 85 | 0.371 |
| 86 | 86 | 0.95 |
| 87 | 87 | 0.096 |
| 88 | 88 | 0.757 |
| 89 | 89 | 0.157 |
| 9 | 9 | 0.311 |
| 90 | 90 | 0.191 |
| 91 | 91 | 0.38 |
| 92 | 92 | 0.441 |
| 93 | 93 | 0.292 |
| 94 | 94 | 0.832 |
| 95 | 95 | 0.0139 |
| 96 | 96 | 0.521 |
| 97 | 97 | 0.977 |
| 98 | 98 | 0.279 |
| 99 | 99 | 0.00786 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12086
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000153 human renal glomerular endothelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000666 (fenestrated cell)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
0002188 (glomerular endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0010317 (germ layer / neural crest derived structure)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0001285 (nephron)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000153 (human renal glomerular endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
