FF:10176-103C5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005287 | ||
|accession_numbers=CAGE;DRX008714;DRR009586;DRZ001011;DRZ002396;DRZ012361;DRZ013746 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001874,UBERON:0000369,UBERON:0002435,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0005383,UBERON:0010011,UBERON:0000204,UBERON:0005382,UBERON:0000454 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010087 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.74!544.88!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!2.41!255.94!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.09!123.02!OLIG1;;chr9:114287433..114287513,+!p1@ZNF483!2.01!251.07!ZNF483;;chr3:181429704..181429722,+!p1@SOX2!1.89!77.14!SOX2;;chr22:38380543..38380569,-!p1@SOX10!1.88!74.47!SOX10;;chr15:80735246..80735321,+!p3@ARNT2!1.88!74.16!ARNT2;;chr2:166326200..166326216,+!p1@CSRNP3!1.86!101.97!CSRNP3;;chrX:85969626..85969664,+!p1@DACH2!1.77!57.66!DACH2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.76!56.88!SMARCE1;;chr15:80733570..80733659,+!p2@ARNT2!1.76!56.56!ARNT2;;chrX:82763292..82763317,+!p1@POU3F4!1.75!55.15!POU3F4;;chr17:53342311..53342400,+!p1@HLF!1.70!56.40!HLF;;chr2:2334997..2335053,-!p1@MYT1L!1.70!49.18!MYT1L;;chr14:29234581..29234601,+!p2@FOXG1!1.68!46.98!FOXG1;;chr14:29235961..29236008,+!p1@FOXG1!1.68!46.98!FOXG1;;chr3:181429741..181429767,+!p2@SOX2!1.64!42.26!SOX2;;chr9:77112244..77112262,+!p1@RORB!1.60!42.89!RORB;;chr2:60781201..60781258,-!p3@BCL11A!1.59!38.34!BCL11A;;chr19:57352109..57352153,-!p2@ZIM2!1.55!34.88!ZIM2;;chr11:61520075..61520136,+!p1@C11orf9!1.54!70.07!C11orf9;;chr7:63505799..63505904,+!p1@ZNF727!1.53!32.99!ZNF727;;chr8:40755333..40755352,-!p1@ZMAT4!1.52!31.74!ZMAT4;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.51!31.58!POU3F3;;chr12:106976774..106976788,+!p1@RFX4!1.50!30.32!RFX4;;chr19:38085768..38085821,+!p1@ZNF540!1.48!43.68!ZNF540;;chr21:34442540..34442560,+!p2@OLIG1!1.47!28.60!OLIG1;;chr2:145277882..145277967,-!p3@ZEB2!1.46!47.76!ZEB2;;chr21:34398234..34398250,+!p1@OLIG2!1.46!28.12!OLIG2;;chr12:106976678..106976708,+!p2@RFX4!1.45!27.34!RFX4;;chr16:1031762..1031781,+!p1@SOX8!1.45!27.02!SOX8;;chr8:53322304..53322340,-!p1@ST18!1.45!26.87!ST18;;chr14:33403881..33403924,+!p1@NPAS3!1.43!25.77!NPAS3;;chr17:38219209..38219230,+!p1@THRA!1.42!316.75!THRA;;chr12:26277817..26277863,-!p2@BHLHE41!1.41!33.31!BHLHE41;;chr2:45168875..45168916,+!p1@SIX3!1.41!24.82!SIX3;;chr12:54779511..54779577,-!p5@ZNF385A!1.40!23.88!ZNF385A;;chr11:113930425..113930471,+!p1@ZBTB16!1.39!33.78!ZBTB16;;chr14:29236269..29236285,+!p3@FOXG1!1.39!23.57!FOXG1;;chr19:46801639..46801699,+!p1@HIF3A!1.38!23.10!HIF3A;;chr1:2461692..2461710,-!p1@HES5!1.38!22.94!HES5;;chr14:58797974..58798011,+!p3@ARID4A!1.36!21.68!ARID4A;;chr10:48355030..48355090,+!p1@ZNF488!1.35!27.34!ZNF488;;chr10:134599649..134599653,-!p1@NKX6-2!1.35!21.37!NKX6-2;;chr10:119302232..119302265,+!p1@EMX2!1.35!21.21!EMX2;;chr9:126774018..126774055,+!p1@LHX2!1.34!21.05!LHX2;;chr17:70117153..70117174,+!p1@SOX9!1.33!203.78!SOX9;;chrX:25034067..25034088,-!p1@ARX!1.33!20.27!ARX;;chr10:118897911..118897974,-!p1@VAX1!1.32!19.80!VAX1;;chr19:46800289..46800327,+!p2@HIF3A!1.31!19.48!HIF3A;;chr10:64134120..64134183,+!p1@ZNF365!1.30!22.62!ZNF365;;chr2:73520667..73520683,-!p1@EGR4!1.29!18.54!EGR4;;chr15:80696703..80696754,+!p1@ARNT2!1.28!24.20!ARNT2;;chr18:55102598..55102623,+!p1@ONECUT2!1.28!17.91!ONECUT2;;chr8:53322347..53322378,-!p2@ST18!1.27!17.60!ST18;;chr3:141105235..141105307,+!p7@ZBTB38!1.26!17.28!ZBTB38;;chr4:57522166..57522260,-!p2@HOPX!1.25!19.17!HOPX;;chr6:19837592..19837621,+!p1@ID4!1.24!98.51!ID4;;chr1:40105299..40105326,-!p1@HEYL!1.24!16.18!HEYL;;chr12:26277956..26277980,-!p1@BHLHE41!1.23!56.56!BHLHE41;;chr15:31658288..31658338,+!p4@KLF13!1.23!16.03!KLF13;;chr7:150974206..150974255,-!p1@SMARCD3!1.22!95.37!SMARCD3;;chr19:38720294..38720348,-!p1@DPF1!1.22!19.48!DPF1;;chr2:2328299..2328363,-!p3@MYT1L!1.22!15.55!MYT1L;;chr8:22550530..22550609,-!p2@EGR3!1.21!15.24!EGR3;;chrX:82763265..82763283,+!p2@POU3F4!1.21!15.24!POU3F4;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.20!31.42!ZNF395;;chr17:7492684..7492778,-!p2@SOX15!1.20!30.95!SOX15;;chr2:45168997..45169020,+!p4@SIX3!1.20!14.93!SIX3;;chr2:95963052..95963106,+!p1@KCNIP3!1.20!14.77!KCNIP3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.19!14.61!POU3F3;;chr22:41763274..41763318,+!p3@TEF!1.19!14.45!TEF;;chr7:96654133..96654150,-!p1@DLX5!1.19!14.45!DLX5;;chr1:61548069..61548102,+!p3@NFIA!1.18!33.78!NFIA;;chr3:25469724..25469773,+!p1@RARB!1.18!20.58!RARB;;chr2:2328095..2328125,-!p7@MYT1L!1.17!13.83!MYT1L;;chr15:37391271..37391376,-!p5@MEIS2!1.15!24.20!MEIS2;;chr2:192015750..192015793,-!p2@STAT4!1.15!17.60!STAT4;;chr2:45168834..45168847,+!p2@SIX3!1.15!13.20!SIX3;;chr11:31832862..31832884,-!p2@PAX6!1.14!12.88!PAX6;;chr19:38042240..38042309,+!p2@ZNF540!1.13!18.85!ZNF540;;chr13:72441315..72441454,-!p1@DACH1!1.12!24.20!DACH1;;chr20:62680984..62680999,-!p1@SOX18!1.12!16.18!SOX18;;chr8:93074803..93074845,-!p1@RUNX1T1!1.12!12.26!RUNX1T1;;chr11:31832658..31832681,-!p1@PAX6!1.12!12.26!PAX6;;chr7:96635178..96635181,+!p1@DLX6!1.12!12.10!DLX6;;chr17:38219143..38219154,+!p2@THRA!1.11!42.42!THRA;;chr3:147127142..147127168,+!p1@ZIC1!1.11!11.78!ZIC1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.11!11.78!ZBED1;;chr3:126076242..126076257,-!p1@KLF15!1.10!14.45!KLF15;;chr2:2330039..2330072,-!p6@MYT1L!1.09!11.31!MYT1L;;chr2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AP4;;chr3:71007770..71007789,-!p9@FOXP1!0.41!5.50!FOXP1;;chr7:102985288..102985310,-!p2@DNAJC2!0.41!4.87!DNAJC2;;chr9:102584159..102584174,+!p2@NR4A3!0.41!3.46!NR4A3;;chr13:37494365..37494381,-!p1@SMAD9!0.41!3.30!SMAD9;;chr19:35417798..35417842,+!p1@ZNF30!0.41!3.14!ZNF30;;chr2:145282041..145282092,-!p8@ZEB2!0.41!2.83!ZEB2;;chrX:83757493..83757508,-!p2@HDX!0.41!2.51!HDX;;chr19:13136130..13136165,+!p6@NFIX!0.41!2.36!NFIX;;chr19:24216201..24216212,+!p4@ZNF254!0.41!2.36!ZNF254;;chr8:71315585..71315605,-!p8@NCOA2!0.41!2.20!NCOA2;;chr19:20844356..20844365,-!p3@ZNF626!0.41!1.89!ZNF626;;chr1:61548118..61548129,+!p9@NFIA!0.41!1.89!NFIA;;chr19:38714847..38714878,-!p3@DPF1!0.41!1.57!DPF1;;chr19:49140645..49140654,-!p6@DBP!0.41!1.57!DBP;;chr1:167298384..167298412,+!p3@POU2F1!0.41!1.57!POU2F1;;chr1:212873200..212873230,-!p5@BATF3!0.41!1.57!BATF3;;chr1:2985726..2985752,+!p2@PRDM16!0.41!1.57!PRDM16;;chr1:42801540..42801562,-!p4@FOXJ3!0.41!1.57!FOXJ3;;chr15:77197723..77197734,-!p4@SCAPER!0.41!1.57!SCAPER;;chr18:55102806..55102847,+!p3@ONECUT2!0.41!1.57!ONECUT2;;chr5:3595961..3595975,+!p3@IRX1!0.41!1.57!IRX1;;chr6:108487220..108487236,+!p2@NR2E1!0.41!1.57!NR2E1;;chr6:126111875..126111886,+!p10@NCOA7!0.41!1.57!NCOA7;;chr7:14026022..14026044,-!p7@ETV1!0.41!1.57!ETV1;;chr8:71157595..71157616,-!p13@NCOA2!0.41!1.57!NCOA2;;chr8:93115584..93115642,-!p5@RUNX1T1!0.41!1.57!RUNX1T1;;chr10:111985777..111985788,+!p4@MXI1!0.41!1.57!MXI1;;chr10:119307702..119307723,+!p10@EMX2!0.41!1.57!EMX2;;chr10:63661053..63661079,+!p14@ARID5B!0.41!1.57!ARID5B;;chr11:31839453..31839462,-!p9@PAX6!0.41!1.57!PAX6;;chr12:106976837..106976850,+!p5@RFX4!0.41!1.57!RFX4;;chr12:51611583..51611612,-!p4@POU6F1!0.41!1.57!POU6F1;;chr2:100721310..100721325,-!p7@AFF3!0.41!1.57!AFF3;;chr2:145188568..145188590,-!p27@ZEB2!0.41!1.57!ZEB2;;chr2:180726291..180726311,-!p1@ZNF385B!0.41!1.57!ZNF385B;;chr3:147111418..147111430,+!p14@ZIC1!0.41!1.57!ZIC1;;chr3:71631248..71631268,-!p26@FOXP1!0.41!1.57!FOXP1;;chr7:135194822..135194860,-!p1@CNOT4!0.40!60.33!CNOT4;;chr10:111967345..111967422,+!p1@MXI1!0.40!36.61!MXI1;;chr4:26322419..26322479,+!p2@RBPJ!0.40!27.50!RBPJ;;chr9:2015335..2015370,+!p1@SMARCA2!0.40!27.34!SMARCA2;;chr2:145275162..145275202,-!p2@ZEB2!0.40!12.88!ZEB2;;chr19:22018966..22019001,-!p1@ZNF43!0.40!12.57!ZNF43;;chr19:38146320..38146401,-!p1@ZFP30!0.40!11.94!ZFP30;;chr15:57210961..57211012,+!p3@TCF12!0.40!6.60!TCF12;;chr6:41040923..41040952,+!p2@NFYA!0.40!5.34!NFYA;;chr4:146402925..146402957,+!p4@SMAD1!0.40!4.56!SMAD1;;chr12:56753939..56753951,-!p2@STAT2!0.40!4.09!STAT2;;chr8:116681150..116681164,-!p5@TRPS1!0.40!3.77!TRPS1;;chr3:178789622..178789633,-!p3@ZMAT3!0.40!3.61!ZMAT3;;chr1:59165763..59165780,-!p2@MYSM1!0.40!3.46!MYSM1;;chr6:15246217..15246228,+!p3@JARID2!0.40!3.30!JARID2;;chr1:164528911..164528940,+!p7@PBX1!0.40!2.67!PBX1;;chr9:127533582..127533615,-!p1@NR6A1!0.40!2.67!NR6A1;;chr3:14990132..14990175,+!p5@NR2C2!0.40!2.20!NR2C2;;chr3:44626359..44626387,+!p4@ZNF197!0.40!2.20!ZNF197;;chr19:37407411..37407451,+!p3@ZNF568!0.40!2.20!ZNF568;;chr12:51611694..51611719,-!p2@POU6F1!0.40!2.04!POU6F1;;chr5:140080022..140080042,+!p1@ZMAT2!0.39!120.04!ZMAT2;;chr5:176449684..176449722,+!p1@ZNF346!0.39!42.42!ZNF346;;chr21:43430440..43430485,-!p1@ZNF295!0.39!30.64!ZNF295;;chr9:129567282..129567353,+!p1@ZBTB43!0.39!28.75!ZBTB43;;chr19:53141584..53141625,-!p2@ZNF83!0.39!16.97!ZNF83;;chr19:56879653..56879743,+!p1@ZNF542!0.39!15.87!ZNF542;;chr17:16472486..16472533,-!p1@ZNF287!0.39!10.37!ZNF287;;chr9:99616768..99616819,-!p1@ZNF782!0.39!9.74!ZNF782;;chr3:71007344..71007348,-!p6@FOXP1!0.39!8.33!FOXP1;;chr19:11071652..11071682,+!p3@SMARCA4!0.39!7.07!SMARCA4;;chr18:74534479..74534551,+!p1@ZNF236!0.39!6.13!ZNF236;;chr19:44809143..44809187,-!p1@ZNF235!0.39!6.13!ZNF235;;chr11:7041554..7041602,-!p1@ZNF214!0.39!3.61!ZNF214;;chr9:14314106..14314119,-!p5@NFIB!0.39!3.30!NFIB;; | |expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.74!544.88!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!2.41!255.94!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.09!123.02!OLIG1;;chr9:114287433..114287513,+!p1@ZNF483!2.01!251.07!ZNF483;;chr3:181429704..181429722,+!p1@SOX2!1.89!77.14!SOX2;;chr22:38380543..38380569,-!p1@SOX10!1.88!74.47!SOX10;;chr15:80735246..80735321,+!p3@ARNT2!1.88!74.16!ARNT2;;chr2:166326200..166326216,+!p1@CSRNP3!1.86!101.97!CSRNP3;;chrX:85969626..85969664,+!p1@DACH2!1.77!57.66!DACH2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.76!56.88!SMARCE1;;chr15:80733570..80733659,+!p2@ARNT2!1.76!56.56!ARNT2;;chrX:82763292..82763317,+!p1@POU3F4!1.75!55.15!POU3F4;;chr17:53342311..53342400,+!p1@HLF!1.70!56.40!HLF;;chr2:2334997..2335053,-!p1@MYT1L!1.70!49.18!MYT1L;;chr14:29234581..29234601,+!p2@FOXG1!1.68!46.98!FOXG1;;chr14:29235961..29236008,+!p1@FOXG1!1.68!46.98!FOXG1;;chr3:181429741..181429767,+!p2@SOX2!1.64!42.26!SOX2;;chr9:77112244..77112262,+!p1@RORB!1.60!42.89!RORB;;chr2:60781201..60781258,-!p3@BCL11A!1.59!38.34!BCL11A;;chr19:57352109..57352153,-!p2@ZIM2!1.55!34.88!ZIM2;;chr11:61520075..61520136,+!p1@C11orf9!1.54!70.07!C11orf9;;chr7:63505799..63505904,+!p1@ZNF727!1.53!32.99!ZNF727;;chr8:40755333..40755352,-!p1@ZMAT4!1.52!31.74!ZMAT4;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.51!31.58!POU3F3;;chr12:106976774..106976788,+!p1@RFX4!1.50!30.32!RFX4;;chr19:38085768..38085821,+!p1@ZNF540!1.48!43.68!ZNF540;;chr21:34442540..34442560,+!p2@OLIG1!1.47!28.60!OLIG1;;chr2:145277882..145277967,-!p3@ZEB2!1.46!47.76!ZEB2;;chr21:34398234..34398250,+!p1@OLIG2!1.46!28.12!OLIG2;;chr12:106976678..106976708,+!p2@RFX4!1.45!27.34!RFX4;;chr16:1031762..1031781,+!p1@SOX8!1.45!27.02!SOX8;;chr8:53322304..53322340,-!p1@ST18!1.45!26.87!ST18;;chr14:33403881..33403924,+!p1@NPAS3!1.43!25.77!NPAS3;;chr17:38219209..38219230,+!p1@THRA!1.42!316.75!THRA;;chr12:26277817..26277863,-!p2@BHLHE41!1.41!33.31!BHLHE41;;chr2:45168875..45168916,+!p1@SIX3!1.41!24.82!SIX3;;chr12:54779511..54779577,-!p5@ZNF385A!1.40!23.88!ZNF385A;;chr11:113930425..113930471,+!p1@ZBTB16!1.39!33.78!ZBTB16;;chr14:29236269..29236285,+!p3@FOXG1!1.39!23.57!FOXG1;;chr19:46801639..46801699,+!p1@HIF3A!1.38!23.10!HIF3A;;chr1:2461692..2461710,-!p1@HES5!1.38!22.94!HES5;;chr14:58797974..58798011,+!p3@ARID4A!1.36!21.68!ARID4A;;chr10:48355030..48355090,+!p1@ZNF488!1.35!27.34!ZNF488;;chr10:134599649..134599653,-!p1@NKX6-2!1.35!21.37!NKX6-2;;chr10:119302232..119302265,+!p1@EMX2!1.35!21.21!EMX2;;chr9:126774018..126774055,+!p1@LHX2!1.34!21.05!LHX2;;chr17:70117153..70117174,+!p1@SOX9!1.33!203.78!SOX9;;chrX:25034067..25034088,-!p1@ARX!1.33!20.27!ARX;;chr10:118897911..118897974,-!p1@VAX1!1.32!19.80!VAX1;;chr19:46800289..46800327,+!p2@HIF3A!1.31!19.48!HIF3A;;chr10:64134120..64134183,+!p1@ZNF365!1.30!22.62!ZNF365;;chr2:73520667..73520683,-!p1@EGR4!1.29!18.54!EGR4;;chr15:80696703..80696754,+!p1@ARNT2!1.28!24.20!ARNT2;;chr18:55102598..55102623,+!p1@ONECUT2!1.28!17.91!ONECUT2;;chr8:53322347..53322378,-!p2@ST18!1.27!17.60!ST18;;chr3:141105235..141105307,+!p7@ZBTB38!1.26!17.28!ZBTB38;;chr4:57522166..57522260,-!p2@HOPX!1.25!19.17!HOPX;;chr6:19837592..19837621,+!p1@ID4!1.24!98.51!ID4;;chr1:40105299..40105326,-!p1@HEYL!1.24!16.18!HEYL;;chr12:26277956..26277980,-!p1@BHLHE41!1.23!56.56!BHLHE41;;chr15:31658288..31658338,+!p4@KLF13!1.23!16.03!KLF13;;chr7:150974206..150974255,-!p1@SMARCD3!1.22!95.37!SMARCD3;;chr19:38720294..38720348,-!p1@DPF1!1.22!19.48!DPF1;;chr2:2328299..2328363,-!p3@MYT1L!1.22!15.55!MYT1L;;chr8:22550530..22550609,-!p2@EGR3!1.21!15.24!EGR3;;chrX:82763265..82763283,+!p2@POU3F4!1.21!15.24!POU3F4;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.20!31.42!ZNF395;;chr17:7492684..7492778,-!p2@SOX15!1.20!30.95!SOX15;;chr2:45168997..45169020,+!p4@SIX3!1.20!14.93!SIX3;;chr2:95963052..95963106,+!p1@KCNIP3!1.20!14.77!KCNIP3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.19!14.61!POU3F3;;chr22:41763274..41763318,+!p3@TEF!1.19!14.45!TEF;;chr7:96654133..96654150,-!p1@DLX5!1.19!14.45!DLX5;;chr1:61548069..61548102,+!p3@NFIA!1.18!33.78!NFIA;;chr3:25469724..25469773,+!p1@RARB!1.18!20.58!RARB;;chr2:2328095..2328125,-!p7@MYT1L!1.17!13.83!MYT1L;;chr15:37391271..37391376,-!p5@MEIS2!1.15!24.20!MEIS2;;chr2:192015750..192015793,-!p2@STAT4!1.15!17.60!STAT4;;chr2:45168834..45168847,+!p2@SIX3!1.15!13.20!SIX3;;chr11:31832862..31832884,-!p2@PAX6!1.14!12.88!PAX6;;chr19:38042240..38042309,+!p2@ZNF540!1.13!18.85!ZNF540;;chr13:72441315..72441454,-!p1@DACH1!1.12!24.20!DACH1;;chr20:62680984..62680999,-!p1@SOX18!1.12!16.18!SOX18;;chr8:93074803..93074845,-!p1@RUNX1T1!1.12!12.26!RUNX1T1;;chr11:31832658..31832681,-!p1@PAX6!1.12!12.26!PAX6;;chr7:96635178..96635181,+!p1@DLX6!1.12!12.10!DLX6;;chr17:38219143..38219154,+!p2@THRA!1.11!42.42!THRA;;chr3:147127142..147127168,+!p1@ZIC1!1.11!11.78!ZIC1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.11!11.78!ZBED1;;chr3:126076242..126076257,-!p1@KLF15!1.10!14.45!KLF15;;chr2:2330039..2330072,-!p6@MYT1L!1.09!11.31!MYT1L;;chr2:45168959..45168990,+!p6@SIX3!1.09!11.31!SIX3;;chr15:37392534..37392562,-!p10@MEIS2!1.08!12.10!MEIS2;;chr9:126774058..126774081,+!p3@LHX2!1.08!11.16!LHX2;;chr1:165414325..165414369,-!p1@RXRG!1.08!11.00!RXRG;;chr17:38219184..38219195,+!p3@THRA!1.07!21.52!THRA;;chr14:33403648..33403710,+!p3@NPAS3!1.07!10.84!NPAS3;;chr11:125034640..125034655,+!p1@PKNOX2!1.06!10.53!PKNOX2;;chr10:31610110..31610159,+!p2@ZEB1!1.06!10.37!ZEB1;;chr8:80679993..80680011,-!p1@HEY1!1.05!14.77!HEY1;;chr11:8102846..8102892,+!p1@TUB!1.05!14.30!TUB;;chr19:49139477..49139552,-!p4@DBP!1.05!13.04!DBP;;chr1:8585945..8586056,-!p3@RERE!1.04!34.09!RERE;;chr3:114819124..114819200,-!p3@ZBTB20!1.04!23.57!ZBTB20;;chr15:61521417..61521460,-!p2@RORA!1.04!22.62!RORA;;chr19:58545454..58545498,+!p1@ZSCAN1!1.04!9.90!ZSCAN1;;chr19:20748574..20748599,-!p1@ZNF737!1.03!58.92!ZNF737;;chr3:33482052..33482116,-!p2@UBP1!1.03!15.24!UBP1;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.83!KLF15;;chr2:45169193..45169219,+!p3@SIX3!1.03!9.74!SIX3;;chr15:80696666..80696700,+!p4@ARNT2!1.03!9.74!ARNT2;;chr7:64023410..64023428,-!p2@ZNF680!1.02!14.93!ZNF680;;chr1:38512457..38512474,-!p1@POU3F1!1.02!10.53!POU3F1;;chr8:30890810..30890880,-!p1@PURG!1.02!9.58!PURG;;chr3:147127177..147127194,+!p2@ZIC1!1.02!9.58!ZIC1;;chr11:47400078..47400106,-!p1@SPI1!1.02!9.58!SPI1;;chr16:30418387..30418422,+!p4@ZNF771!1.02!9.43!ZNF771;;chr1:151032860..151032918,+!p1@MLLT11!1.01!111.55!MLLT11;;chr2:60780607..60780624,-!p2@BCL11A!1.01!28.60!BCL11A;;chr10:38265517..38265591,-!p1@ZNF25!1.00!35.98!ZNF25;;chr3:114173720..114173794,-!p6@ZBTB20!1.00!9.11!ZBTB20;;chr16:67197654..67197716,+!p3@HSF4!1.00!9.11!HSF4;;chr18:55102628..55102646,+!p2@ONECUT2!0.99!8.80!ONECUT2;;chr3:25469815..25469866,+!p3@RARB!0.99!8.80!RARB;;chr10:64133862..64133884,+!p4@ZNF365!0.99!8.80!ZNF365;;chr11:85393886..85393913,-!p3@CREBZF!0.98!8.64!CREBZF;;chr2:2335070..2335098,-!p4@MYT1L!0.98!8.64!MYT1L;;chr4:57547454..57547469,-!p1@HOPX!0.98!8.48!HOPX;;chr1:8585919..8585943,-!p18@RERE!0.98!8.48!RERE;;chr8:22550982..22550999,-!p1@EGR3!0.97!23.88!EGR3;;chr7:28220631..28220649,-!p6@JAZF1!0.97!8.33!JAZF1;;chr14:58798013..58798071,+!p2@ARID4A!0.97!8.33!ARID4A;;chr9:3525867..3525902,-!p3@RFX3!0.96!28.91!RFX3;;chr14:21994337..21994442,-!p1@SALL2!0.96!22.78!SALL2;;chr1:164528340..164528379,+!p4@PBX1!0.96!20.74!PBX1;;chr7:96635448..96635470,+!p5@DLX6!0.96!8.17!DLX6;;chr13:72441074..72441172,-!p2@DACH1!0.96!8.17!DACH1;;chr3:21792682..21792720,-!p1@ZNF385D!0.96!8.17!ZNF385D;;chr22:41777927..41777971,+!p1@TEF!0.95!68.82!TEF;;chr7:64023441..64023462,-!p1@ZNF680!0.95!64.42!ZNF680;;chr4:206390..206444,+!p1@ZNF876P!0.95!14.45!ZNF876P;;chr2:113057415..113057477,+!p3@ZC3H6!0.95!10.37!ZC3H6;;chr8:93074848..93074871,-!p3@RUNX1T1!0.95!8.01!RUNX1T1;;chr8:30891078..30891128,-!p2@PURG!0.95!7.86!PURG;;chr15:80696410..80696477,+!p6@ARNT2!0.95!7.86!ARNT2;;chr19:22193731..22193751,-!p1@ZNF208!0.95!7.86!ZNF208;;chr9:115818951..115819011,-!p1@ZFP37!0.94!24.67!ZFP37;;chr6:126070769..126070801,+!p1@HEY2!0.94!8.96!HEY2;;chr6:108487289..108487302,+!p1@NR2E1!0.94!7.70!NR2E1;;chr2:45169143..45169167,+!p5@SIX3!0.94!7.70!SIX3;;chr19:56988677..56988729,-!p1@ZNF667!0.93!13.51!ZNF667;;chr19:57019215..57019250,+!p1@ZNF471!0.93!11.47!ZNF471;;chr2:45168856..45168867,+!p7@SIX3!0.93!7.54!SIX3;;chr19:13135386..13135435,+!p4@NFIX!0.93!7.54!NFIX;;chr5:138629628..138629688,+!p2@MATR3!0.92!182.41!MATR3;;chr19:53193731..53193767,-!p1@ZNF83!0.92!67.72!ZNF83;;chr19:21512202..21512225,-!p1@ZNF708!0.92!39.12!ZNF708;;chrX:101186981..101187030,-!p1@ZMAT1!0.92!24.98!ZMAT1;;chr5:178368186..178368238,+!p1@ZNF454!0.92!13.51!ZNF454;;chr1:214161272..214161322,+!p1@PROX1!0.92!10.37!PROX1;;chr14:33408072..33408114,+!p2@NPAS3!0.92!8.80!NPAS3;;chrX:118739835..118739862,-!p1@NKRF!0.92!8.01!NKRF;;chr3:114819101..114819121,-!p7@ZBTB20!0.92!7.38!ZBTB20;;chr19:53636125..53636178,-!p1@ZNF415!0.91!20.90!ZNF415;;chr18:6414884..6414942,-!p1@L3MBTL4!0.91!9.11!L3MBTL4;;chr15:37390374..37390422,-!p9@MEIS2!0.91!8.96!MEIS2;;chr6:126112039..126112062,+!p8@NCOA7!0.91!8.80!NCOA7;;chr7:96634878..96634900,+!p2@DLX6!0.91!7.07!DLX6;;chr11:125034605..125034636,+!p2@PKNOX2!0.91!7.07!PKNOX2;;chr2:45169684..45169715,+!p9@SIX3!0.91!7.07!SIX3;;chr13:45010939..45011033,-!p1@TSC22D1!0.90!478.89!TSC22D1;;chr19:49140609..49140643,-!p1@DBP!0.90!41.01!DBP;;chr19:37096139..37096170,-!p2@ZNF529!0.90!20.27!ZNF529;;chr19:38183208..38183225,-!p1@ZNF781!0.90!8.96!ZNF781;;chr5:139487363..139487444,+!p1@PURA!0.89!54.52!PURA;;chr20:3388541..3388575,-!p2@C20orf194!0.89!27.97!C20orf194;;chr21:34442584..34442587,+!p3@OLIG1!0.89!6.76!OLIG1;;chr7:64254793..64254813,+!p1@ZNF138!0.88!80.13!ZNF138;;chr9:3525910..3525955,-!p4@RFX3!0.88!20.58!RFX3;;chr9:3525727..3525828,-!p2@RFX3!0.88!17.75!RFX3;;chr2:42721689..42721723,+!p6@MTA3!0.88!6.60!MTA3;;chr3:147111231..147111281,+!p3@ZIC1!0.88!6.60!ZIC1;;chr9:14314131..14314147,-!p2@NFIB!0.87!37.55!NFIB;;chr11:31839488..31839515,-!p3@PAX6!0.87!6.44!PAX6;;chrX:106959661..106959763,-!p4@TSC22D3!0.86!19.01!TSC22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AP4;;chr3:71007770..71007789,-!p9@FOXP1!0.41!5.50!FOXP1;;chr7:102985288..102985310,-!p2@DNAJC2!0.41!4.87!DNAJC2;;chr9:102584159..102584174,+!p2@NR4A3!0.41!3.46!NR4A3;;chr13:37494365..37494381,-!p1@SMAD9!0.41!3.30!SMAD9;;chr19:35417798..35417842,+!p1@ZNF30!0.41!3.14!ZNF30;;chr2:145282041..145282092,-!p8@ZEB2!0.41!2.83!ZEB2;;chrX:83757493..83757508,-!p2@HDX!0.41!2.51!HDX;;chr19:13136130..13136165,+!p6@NFIX!0.41!2.36!NFIX;;chr19:24216201..24216212,+!p4@ZNF254!0.41!2.36!ZNF254;;chr8:71315585..71315605,-!p8@NCOA2!0.41!2.20!NCOA2;;chr19:20844356..20844365,-!p3@ZNF626!0.41!1.89!ZNF626;;chr1:61548118..61548129,+!p9@NFIA!0.41!1.89!NFIA;;chr19:38714847..38714878,-!p3@DPF1!0.41!1.57!DPF1;;chr19:49140645..49140654,-!p6@DBP!0.41!1.57!DBP;;chr1:167298384..167298412,+!p3@POU2F1!0.41!1.57!POU2F1;;chr1:212873200..212873230,-!p5@BATF3!0.41!1.57!BATF3;;chr1:2985726..2985752,+!p2@PRDM16!0.41!1.57!PRDM16;;chr1:42801540..42801562,-!p4@FOXJ3!0.41!1.57!FOXJ3;;chr15:77197723..77197734,-!p4@SCAPER!0.41!1.57!SCAPER;;chr18:55102806..55102847,+!p3@ONECUT2!0.41!1.57!ONECUT2;;chr5:3595961..3595975,+!p3@IRX1!0.41!1.57!IRX1;;chr6:108487220..108487236,+!p2@NR2E1!0.41!1.57!NR2E1;;chr6:126111875..126111886,+!p10@NCOA7!0.41!1.57!NCOA7;;chr7:14026022..14026044,-!p7@ETV1!0.41!1.57!ETV1;;chr8:71157595..71157616,-!p13@NCOA2!0.41!1.57!NCOA2;;chr8:93115584..93115642,-!p5@RUNX1T1!0.41!1.57!RUNX1T1;;chr10:111985777..111985788,+!p4@MXI1!0.41!1.57!MXI1;;chr10:119307702..119307723,+!p10@EMX2!0.41!1.57!EMX2;;chr10:63661053..63661079,+!p14@ARID5B!0.41!1.57!ARID5B;;chr11:31839453..31839462,-!p9@PAX6!0.41!1.57!PAX6;;chr12:106976837..106976850,+!p5@RFX4!0.41!1.57!RFX4;;chr12:51611583..51611612,-!p4@POU6F1!0.41!1.57!POU6F1;;chr2:100721310..100721325,-!p7@AFF3!0.41!1.57!AFF3;;chr2:145188568..145188590,-!p27@ZEB2!0.41!1.57!ZEB2;;chr2:180726291..180726311,-!p1@ZNF385B!0.41!1.57!ZNF385B;;chr3:147111418..147111430,+!p14@ZIC1!0.41!1.57!ZIC1;;chr3:71631248..71631268,-!p26@FOXP1!0.41!1.57!FOXP1;;chr7:135194822..135194860,-!p1@CNOT4!0.40!60.33!CNOT4;;chr10:111967345..111967422,+!p1@MXI1!0.40!36.61!MXI1;;chr4:26322419..26322479,+!p2@RBPJ!0.40!27.50!RBPJ;;chr9:2015335..2015370,+!p1@SMARCA2!0.40!27.34!SMARCA2;;chr2:145275162..145275202,-!p2@ZEB2!0.40!12.88!ZEB2;;chr19:22018966..22019001,-!p1@ZNF43!0.40!12.57!ZNF43;;chr19:38146320..38146401,-!p1@ZFP30!0.40!11.94!ZFP30;;chr15:57210961..57211012,+!p3@TCF12!0.40!6.60!TCF12;;chr6:41040923..41040952,+!p2@NFYA!0.40!5.34!NFYA;;chr4:146402925..146402957,+!p4@SMAD1!0.40!4.56!SMAD1;;chr12:56753939..56753951,-!p2@STAT2!0.40!4.09!STAT2;;chr8:116681150..116681164,-!p5@TRPS1!0.40!3.77!TRPS1;;chr3:178789622..178789633,-!p3@ZMAT3!0.40!3.61!ZMAT3;;chr1:59165763..59165780,-!p2@MYSM1!0.40!3.46!MYSM1;;chr6:15246217..15246228,+!p3@JARID2!0.40!3.30!JARID2;;chr1:164528911..164528940,+!p7@PBX1!0.40!2.67!PBX1;;chr9:127533582..127533615,-!p1@NR6A1!0.40!2.67!NR6A1;;chr3:14990132..14990175,+!p5@NR2C2!0.40!2.20!NR2C2;;chr3:44626359..44626387,+!p4@ZNF197!0.40!2.20!ZNF197;;chr19:37407411..37407451,+!p3@ZNF568!0.40!2.20!ZNF568;;chr12:51611694..51611719,-!p2@POU6F1!0.40!2.04!POU6F1;;chr5:140080022..140080042,+!p1@ZMAT2!0.39!120.04!ZMAT2;;chr5:176449684..176449722,+!p1@ZNF346!0.39!42.42!ZNF346;;chr21:43430440..43430485,-!p1@ZNF295!0.39!30.64!ZNF295;;chr9:129567282..129567353,+!p1@ZBTB43!0.39!28.75!ZBTB43;;chr19:53141584..53141625,-!p2@ZNF83!0.39!16.97!ZNF83;;chr19:56879653..56879743,+!p1@ZNF542!0.39!15.87!ZNF542;;chr17:16472486..16472533,-!p1@ZNF287!0.39!10.37!ZNF287;;chr9:99616768..99616819,-!p1@ZNF782!0.39!9.74!ZNF782;;chr3:71007344..71007348,-!p6@FOXP1!0.39!8.33!FOXP1;;chr19:11071652..11071682,+!p3@SMARCA4!0.39!7.07!SMARCA4;;chr18:74534479..74534551,+!p1@ZNF236!0.39!6.13!ZNF236;;chr19:44809143..44809187,-!p1@ZNF235!0.39!6.13!ZNF235;;chr11:7041554..7041602,-!p1@ZNF214!0.39!3.61!ZNF214;;chr9:14314106..14314119,-!p5@NFIB!0.39!3.30!NFIB;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001874;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002435;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005382;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009663 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 36: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/putamen%252c%2520adult%252c%2520donor10196.CNhs12324.10176-103C5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/putamen%252c%2520adult%252c%2520donor10196.CNhs12324.10176-103C5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/putamen%252c%2520adult%252c%2520donor10196.CNhs12324.10176-103C5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/putamen%252c%2520adult%252c%2520donor10196.CNhs12324.10176-103C5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/putamen%252c%2520adult%252c%2520donor10196.CNhs12324.10176-103C5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10176-103C5 | |id=FF:10176-103C5 | ||
|is_a=EFO:0002091;;FF:0010087 | |is_a=EFO:0002091;;FF:0010087 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12324 | |||
|library_id_phase_based=2:CNhs12324 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10176 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10176 | |||
|name=putamen, adult, donor10196 | |name=putamen, adult, donor10196 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 44: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12324,LSID913,release011,COMPLETED | |profile_hcage=CNhs12324,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 59: | Line 79: | ||
|rna_weight_ug=41.274 | |rna_weight_ug=41.274 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 80: | Line 101: | ||
|top_motifs=OCT4_SOX2{dimer}:3.74571538107;MYFfamily:3.62338475537;REST:3.52244424456;RFX1:3.47088148592;AHR_ARNT_ARNT2:3.46532716489;EGR1..3:3.39869703495;ZFP161:3.32802404077;MED-1{core}:3.18046667255;NHLH1,2:3.13927012264;FOXM1:3.10953663759;RREB1:3.05905808436;CUX2:3.01311938835;ARID5B:2.90419905348;PRDM1:2.81909026391;RFX2..5_RFXANK_RFXAP:2.79088378139;PRRX1,2:2.74343382848;ZBTB6:2.72684742768;MTE{core}:2.69334612711;NKX6-1,2:2.62172438838;NKX2-3_NKX2-5:2.60155898525;ATF2:2.4906955825;ADNP_IRX_SIX_ZHX:2.4858743509;PAX5:2.47974133455;HBP1_HMGB_SSRP1_UBTF:2.45518339166;MTF1:2.44070847137;CDC5L:2.36056645781;SOX2:2.3396574263;MZF1:2.32157149406;GTF2I:2.31144856396;DBP:2.22367587124;SOX5:2.18886624488;ALX1:2.14973073424;GATA4:2.05001293999;TFAP2B:1.99848068368;NRF1:1.98063339196;KLF4:1.89381848243;LMO2:1.87737616157;HIC1:1.84872749976;TLX2:1.84271062723;PAX6:1.82961355766;ONECUT1,2:1.79489682813;POU1F1:1.74871543802;BREu{core}:1.7412453936;FOXP1:1.73505561053;PATZ1:1.73146810605;POU6F1:1.68191336237;MAZ:1.66929477071;FOXP3:1.63628669807;IKZF2:1.63612609186;SOX{8,9,10}:1.62952498478;PAX4:1.60995517358;RBPJ:1.59352127042;POU3F1..4:1.58981049295;NKX3-2:1.54148090732;FOXD3:1.51283035174;PAX1,9:1.47725057989;HOX{A4,D4}:1.47037715032;HOXA9_MEIS1:1.46420170661;SOX17:1.45097066343;STAT1,3:1.42419282832;GFI1B:1.3854386437;TGIF1:1.35455255504;PBX1:1.34997341008;SMAD1..7,9:1.31009811693;NFIL3:1.26315464302;ZBTB16:1.25235032723;MAFB:1.25169155318;HOX{A6,A7,B6,B7}:1.25062586648;NFIX:1.24063293923;JUN:1.2401697722;FOXN1:1.22538622643;MYOD1:1.14214446139;CRX:1.10378869044;POU5F1:1.10106986382;CREB1:1.08128299191;ZNF143:1.04134037102;ZNF384:1.02652970377;LEF1_TCF7_TCF7L1,2:1.02621919698;HMGA1,2:1.02275861628;TOPORS:1.01338248899;NANOG:1.00806273331;XBP1:0.992323799726;T:0.9772126603;TEF:0.929964741548;SP1:0.870608992502;TFDP1:0.813172241272;EP300:0.807715074733;EBF1:0.795380081484;YY1:0.79047065373;ZIC1..3:0.767634208655;GFI1:0.766279651977;SREBF1,2:0.754849809033;GCM1,2:0.748205871569;FOX{I1,J2}:0.673549812923;HMX1:0.662415724064;BPTF:0.612059689635;ZEB1:0.571262541722;STAT2,4,6:0.565118986966;AR:0.552575456128;GTF2A1,2:0.545527637731;MYBL2:0.519604025273;GZF1:0.471476911666;LHX3,4:0.454724618156;HAND1,2:0.440296668008;PDX1:0.401459212044;ZNF423:0.364283764779;VSX1,2:0.352113029125;FOX{F1,F2,J1}:0.34925339935;TFAP2{A,C}:0.249998505882;PAX2:0.244004931991;NR3C1:0.24379169186;MEF2{A,B,C,D}:0.211552886395;ATF4:0.192403554163;UFEwm:0.167049910654;CDX1,2,4:0.124879941158;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.108381711274;SPZ1:0.105696276737;ATF5_CREB3:0.0945905928571;NFY{A,B,C}:0.0590593521508;TLX1..3_NFIC{dimer}:-0.0194609567203;IKZF1:-0.0370515387551;ZNF238:-0.0393571308568;AIRE:-0.0617172603882;FOXO1,3,4:-0.0787838732173;FOX{D1,D2}:-0.0869302087466;HSF1,2:-0.0920231948126;PAX3,7:-0.134163745702;RORA:-0.189837065966;IRF7:-0.210383829341;ESRRA:-0.211071321315;SNAI1..3:-0.216120768858;bHLH_family:-0.243496330471;DMAP1_NCOR{1,2}_SMARC:-0.318981060025;NKX3-1:-0.361302027625;NFE2L1:-0.368032430951;IRF1,2:-0.393579511318;PITX1..3:-0.411944391303;CEBPA,B_DDIT3:-0.486864479331;SPI1:-0.497404355694;NFE2L2:-0.507242716894;FOXQ1:-0.553007203505;TBX4,5:-0.565858942004;NFE2:-0.567802322779;FOXL1:-0.61240008152;NR5A1,2:-0.676293298786;XCPE1{core}:-0.681275433598;GATA6:-0.684785657419;RXR{A,B,G}:-0.697424642369;NFATC1..3:-0.707148552585;NANOG{mouse}:-0.789183935958;SPIB:-0.809746431145;NKX2-2,8:-0.813720674513;HIF1A:-0.817615522139;EVI1:-0.888687135185;ATF6:-0.894254659141;ETS1,2:-0.912052370977;FOS_FOS{B,L1}_JUN{B,D}:-0.931808279441;HNF1A:-0.953796792612;FOSL2:-1.01865643429;TFAP4:-1.03287605221;ELK1,4_GABP{A,B1}:-1.03332404768;HNF4A_NR2F1,2:-1.04605769554;ALX4:-1.09583877191;FOXA2:-1.12071809042;NKX2-1,4:-1.12290426628;POU2F1..3:-1.12705577592;BACH2:-1.12764749491;RXRA_VDR{dimer}:-1.16602315343;TEAD1:-1.18680679495;MYB:-1.20756186365;PAX8:-1.20890125074;NR1H4:-1.22498635741;NFKB1_REL_RELA:-1.22987240858;TP53:-1.25446481169;TFCP2:-1.29089575941;ZNF148:-1.30168916313;RUNX1..3:-1.32914620966;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.33957065153;GLI1..3:-1.36468147323;E2F1..5:-1.37676092556;ESR1:-1.44526034945;ELF1,2,4:-1.59241447172;HLF:-1.60480781922;TBP:-1.61910559777;HES1:-1.72127434655;SRF:-1.93829764317;NR6A1:-1.99990530776;TAL1_TCF{3,4,12}:-2.01597414788;STAT5{A,B}:-2.44005633842;EN1,2:-2.50943029737;HOX{A5,B5}:-2.74859820823;PPARG:-2.76312280038 | |top_motifs=OCT4_SOX2{dimer}:3.74571538107;MYFfamily:3.62338475537;REST:3.52244424456;RFX1:3.47088148592;AHR_ARNT_ARNT2:3.46532716489;EGR1..3:3.39869703495;ZFP161:3.32802404077;MED-1{core}:3.18046667255;NHLH1,2:3.13927012264;FOXM1:3.10953663759;RREB1:3.05905808436;CUX2:3.01311938835;ARID5B:2.90419905348;PRDM1:2.81909026391;RFX2..5_RFXANK_RFXAP:2.79088378139;PRRX1,2:2.74343382848;ZBTB6:2.72684742768;MTE{core}:2.69334612711;NKX6-1,2:2.62172438838;NKX2-3_NKX2-5:2.60155898525;ATF2:2.4906955825;ADNP_IRX_SIX_ZHX:2.4858743509;PAX5:2.47974133455;HBP1_HMGB_SSRP1_UBTF:2.45518339166;MTF1:2.44070847137;CDC5L:2.36056645781;SOX2:2.3396574263;MZF1:2.32157149406;GTF2I:2.31144856396;DBP:2.22367587124;SOX5:2.18886624488;ALX1:2.14973073424;GATA4:2.05001293999;TFAP2B:1.99848068368;NRF1:1.98063339196;KLF4:1.89381848243;LMO2:1.87737616157;HIC1:1.84872749976;TLX2:1.84271062723;PAX6:1.82961355766;ONECUT1,2:1.79489682813;POU1F1:1.74871543802;BREu{core}:1.7412453936;FOXP1:1.73505561053;PATZ1:1.73146810605;POU6F1:1.68191336237;MAZ:1.66929477071;FOXP3:1.63628669807;IKZF2:1.63612609186;SOX{8,9,10}:1.62952498478;PAX4:1.60995517358;RBPJ:1.59352127042;POU3F1..4:1.58981049295;NKX3-2:1.54148090732;FOXD3:1.51283035174;PAX1,9:1.47725057989;HOX{A4,D4}:1.47037715032;HOXA9_MEIS1:1.46420170661;SOX17:1.45097066343;STAT1,3:1.42419282832;GFI1B:1.3854386437;TGIF1:1.35455255504;PBX1:1.34997341008;SMAD1..7,9:1.31009811693;NFIL3:1.26315464302;ZBTB16:1.25235032723;MAFB:1.25169155318;HOX{A6,A7,B6,B7}:1.25062586648;NFIX:1.24063293923;JUN:1.2401697722;FOXN1:1.22538622643;MYOD1:1.14214446139;CRX:1.10378869044;POU5F1:1.10106986382;CREB1:1.08128299191;ZNF143:1.04134037102;ZNF384:1.02652970377;LEF1_TCF7_TCF7L1,2:1.02621919698;HMGA1,2:1.02275861628;TOPORS:1.01338248899;NANOG:1.00806273331;XBP1:0.992323799726;T:0.9772126603;TEF:0.929964741548;SP1:0.870608992502;TFDP1:0.813172241272;EP300:0.807715074733;EBF1:0.795380081484;YY1:0.79047065373;ZIC1..3:0.767634208655;GFI1:0.766279651977;SREBF1,2:0.754849809033;GCM1,2:0.748205871569;FOX{I1,J2}:0.673549812923;HMX1:0.662415724064;BPTF:0.612059689635;ZEB1:0.571262541722;STAT2,4,6:0.565118986966;AR:0.552575456128;GTF2A1,2:0.545527637731;MYBL2:0.519604025273;GZF1:0.471476911666;LHX3,4:0.454724618156;HAND1,2:0.440296668008;PDX1:0.401459212044;ZNF423:0.364283764779;VSX1,2:0.352113029125;FOX{F1,F2,J1}:0.34925339935;TFAP2{A,C}:0.249998505882;PAX2:0.244004931991;NR3C1:0.24379169186;MEF2{A,B,C,D}:0.211552886395;ATF4:0.192403554163;UFEwm:0.167049910654;CDX1,2,4:0.124879941158;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.108381711274;SPZ1:0.105696276737;ATF5_CREB3:0.0945905928571;NFY{A,B,C}:0.0590593521508;TLX1..3_NFIC{dimer}:-0.0194609567203;IKZF1:-0.0370515387551;ZNF238:-0.0393571308568;AIRE:-0.0617172603882;FOXO1,3,4:-0.0787838732173;FOX{D1,D2}:-0.0869302087466;HSF1,2:-0.0920231948126;PAX3,7:-0.134163745702;RORA:-0.189837065966;IRF7:-0.210383829341;ESRRA:-0.211071321315;SNAI1..3:-0.216120768858;bHLH_family:-0.243496330471;DMAP1_NCOR{1,2}_SMARC:-0.318981060025;NKX3-1:-0.361302027625;NFE2L1:-0.368032430951;IRF1,2:-0.393579511318;PITX1..3:-0.411944391303;CEBPA,B_DDIT3:-0.486864479331;SPI1:-0.497404355694;NFE2L2:-0.507242716894;FOXQ1:-0.553007203505;TBX4,5:-0.565858942004;NFE2:-0.567802322779;FOXL1:-0.61240008152;NR5A1,2:-0.676293298786;XCPE1{core}:-0.681275433598;GATA6:-0.684785657419;RXR{A,B,G}:-0.697424642369;NFATC1..3:-0.707148552585;NANOG{mouse}:-0.789183935958;SPIB:-0.809746431145;NKX2-2,8:-0.813720674513;HIF1A:-0.817615522139;EVI1:-0.888687135185;ATF6:-0.894254659141;ETS1,2:-0.912052370977;FOS_FOS{B,L1}_JUN{B,D}:-0.931808279441;HNF1A:-0.953796792612;FOSL2:-1.01865643429;TFAP4:-1.03287605221;ELK1,4_GABP{A,B1}:-1.03332404768;HNF4A_NR2F1,2:-1.04605769554;ALX4:-1.09583877191;FOXA2:-1.12071809042;NKX2-1,4:-1.12290426628;POU2F1..3:-1.12705577592;BACH2:-1.12764749491;RXRA_VDR{dimer}:-1.16602315343;TEAD1:-1.18680679495;MYB:-1.20756186365;PAX8:-1.20890125074;NR1H4:-1.22498635741;NFKB1_REL_RELA:-1.22987240858;TP53:-1.25446481169;TFCP2:-1.29089575941;ZNF148:-1.30168916313;RUNX1..3:-1.32914620966;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.33957065153;GLI1..3:-1.36468147323;E2F1..5:-1.37676092556;ESR1:-1.44526034945;ELF1,2,4:-1.59241447172;HLF:-1.60480781922;TBP:-1.61910559777;HES1:-1.72127434655;SRF:-1.93829764317;NR6A1:-1.99990530776;TAL1_TCF{3,4,12}:-2.01597414788;STAT5{A,B}:-2.44005633842;EN1,2:-2.50943029737;HOX{A5,B5}:-2.74859820823;PPARG:-2.76312280038 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10176-103C5;search_select_hide=table117:FF:10176-103C5 | |||
}} | }} |
Latest revision as of 12:25, 3 June 2020
Name: | putamen, adult, donor10196 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12324 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12324
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12324
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0668 |
10 | 10 | 0.0449 |
100 | 100 | 0.34 |
101 | 101 | 0.378 |
102 | 102 | 0.66 |
103 | 103 | 0.132 |
104 | 104 | 0.134 |
105 | 105 | 0.125 |
106 | 106 | 0.0244 |
107 | 107 | 0.0954 |
108 | 108 | 0.94 |
109 | 109 | 0.00515 |
11 | 11 | 0.0152 |
110 | 110 | 0.0561 |
111 | 111 | 0.199 |
112 | 112 | 0.452 |
113 | 113 | 0.631 |
114 | 114 | 0.204 |
115 | 115 | 0.735 |
116 | 116 | 0.18 |
117 | 117 | 0.0113 |
118 | 118 | 0.188 |
119 | 119 | 0.146 |
12 | 12 | 0.831 |
120 | 120 | 0.171 |
121 | 121 | 0.236 |
122 | 122 | 0.96 |
123 | 123 | 0.712 |
124 | 124 | 0.165 |
125 | 125 | 0.47 |
126 | 126 | 0.0289 |
127 | 127 | 0.298 |
128 | 128 | 0.163 |
129 | 129 | 0.411 |
13 | 13 | 0.00154 |
130 | 130 | 0.279 |
131 | 131 | 0.125 |
132 | 132 | 0.723 |
133 | 133 | 0.00964 |
134 | 134 | 0.715 |
135 | 135 | 0.346 |
136 | 136 | 0.0114 |
137 | 137 | 0.556 |
138 | 138 | 0.919 |
139 | 139 | 0.198 |
14 | 14 | 0.783 |
140 | 140 | 0.612 |
141 | 141 | 0.469 |
142 | 142 | 0.768 |
143 | 143 | 0.0195 |
144 | 144 | 0.84 |
145 | 145 | 0.152 |
146 | 146 | 0.308 |
147 | 147 | 0.988 |
148 | 148 | 0.111 |
149 | 149 | 0.245 |
15 | 15 | 0.0746 |
150 | 150 | 0.144 |
151 | 151 | 0.521 |
152 | 152 | 0.0674 |
153 | 153 | 0.734 |
154 | 154 | 0.352 |
155 | 155 | 0.765 |
156 | 156 | 0.47 |
157 | 157 | 0.414 |
158 | 158 | 0.664 |
159 | 159 | 0.0589 |
16 | 16 | 0.0684 |
160 | 160 | 0.215 |
161 | 161 | 0.295 |
162 | 162 | 0.83 |
163 | 163 | 0.933 |
164 | 164 | 0.0345 |
165 | 165 | 0.0426 |
166 | 166 | 0.942 |
167 | 167 | 0.86 |
168 | 168 | 0.221 |
169 | 169 | 0.00969 |
17 | 17 | 0.117 |
18 | 18 | 0.168 |
19 | 19 | 0.113 |
2 | 2 | 0.768 |
20 | 20 | 0.179 |
21 | 21 | 0.144 |
22 | 22 | 0.147 |
23 | 23 | 0.22 |
24 | 24 | 0.0478 |
25 | 25 | 0.461 |
26 | 26 | 2.46237e-4 |
27 | 27 | 0.643 |
28 | 28 | 0.767 |
29 | 29 | 0.0186 |
3 | 3 | 0.0544 |
30 | 30 | 0.99 |
31 | 31 | 0.769 |
32 | 32 | 0.0343 |
33 | 33 | 0.0609 |
34 | 34 | 0.621 |
35 | 35 | 0.816 |
36 | 36 | 0.128 |
37 | 37 | 0.0385 |
38 | 38 | 0.293 |
39 | 39 | 0.231 |
4 | 4 | 0.751 |
40 | 40 | 0.026 |
41 | 41 | 0.346 |
42 | 42 | 0.285 |
43 | 43 | 0.0973 |
44 | 44 | 0.255 |
45 | 45 | 0.597 |
46 | 46 | 0.0773 |
47 | 47 | 0.0685 |
48 | 48 | 0.0556 |
49 | 49 | 0.168 |
5 | 5 | 0.372 |
50 | 50 | 0.28 |
51 | 51 | 0.469 |
52 | 52 | 0.433 |
53 | 53 | 0.956 |
54 | 54 | 0.382 |
55 | 55 | 0.41 |
56 | 56 | 0.494 |
57 | 57 | 0.31 |
58 | 58 | 0.297 |
59 | 59 | 0.0684 |
6 | 6 | 0.944 |
60 | 60 | 0.0472 |
61 | 61 | 0.12 |
62 | 62 | 0.162 |
63 | 63 | 0.17 |
64 | 64 | 0.184 |
65 | 65 | 0.185 |
66 | 66 | 0.147 |
67 | 67 | 0.31 |
68 | 68 | 0.122 |
69 | 69 | 0.359 |
7 | 7 | 0.0504 |
70 | 70 | 0.046 |
71 | 71 | 0.0101 |
72 | 72 | 0.361 |
73 | 73 | 0.0275 |
74 | 74 | 0.653 |
75 | 75 | 0.0388 |
76 | 76 | 0.517 |
77 | 77 | 0.132 |
78 | 78 | 0.00207 |
79 | 79 | 0.231 |
8 | 8 | 0.062 |
80 | 80 | 0.503 |
81 | 81 | 0.639 |
82 | 82 | 0.587 |
83 | 83 | 0.0667 |
84 | 84 | 0.892 |
85 | 85 | 0.196 |
86 | 86 | 0.225 |
87 | 87 | 8.58404e-4 |
88 | 88 | 0.797 |
89 | 89 | 0.481 |
9 | 9 | 0.347 |
90 | 90 | 0.0723 |
91 | 91 | 0.407 |
92 | 92 | 0.471 |
93 | 93 | 0.954 |
94 | 94 | 0.239 |
95 | 95 | 0.0239 |
96 | 96 | 0.783 |
97 | 97 | 0.66 |
98 | 98 | 0.258 |
99 | 99 | 0.537 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12324
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001874 (putamen)
0000369 (corpus striatum)
0002435 (striatum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0005383 (caudate-putamen)
0010011 (collection of basal ganglia)
0000204 (ventral part of telencephalon)
0005382 (dorsal striatum)
0000454 (cerebral subcortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010087 (human putamen - adult donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)