FF:11590-120G6: Difference between revisions

Latest revision as of 18:10, 4 June 2020

Name:	Alveolar Epithelial Cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12084
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	NA
age	NA
cell type	epithelial cell of lung, small airway
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	lot:4978
catalog number	SC3205
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005923

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12084		CAGE		DRX008105		DRR008977

Accession ID Hg19

Library id		BAM		CTSS
CNhs12084		DRZ000402		DRZ001787

Accession ID Hg38

Library id		BAM		CTSS
CNhs12084		DRZ011752		DRZ013137

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005923

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10002.CTTGTA		sRNA-Seq		DRX036999		DRR041365

Accession ID Hg19

Library id		BAM		CTSS
SRhi10002.CTTGTA		DRZ007007

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0233
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0972
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.23
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0936
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.473
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.246
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.34
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.83
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.23
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	1.059
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.596
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.23
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.652
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12084

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.729
MA0003.1	MA0003.1	0.305
MA0004.1	MA0004.1	0.822
MA0006.1	MA0006.1	0.158
MA0007.1	MA0007.1	0.0331
MA0009.1	MA0009.1	0.475
MA0014.1	MA0014.1	0.758
MA0017.1	MA0017.1	0.171
MA0018.2	MA0018.2	0.404
MA0019.1	MA0019.1	0.0219
MA0024.1	MA0024.1	0.936
MA0025.1	MA0025.1	0.088
MA0027.1	MA0027.1	0.937
MA0028.1	MA0028.1	0.393
MA0029.1	MA0029.1	0.0858
MA0030.1	MA0030.1	0.995
MA0031.1	MA0031.1	0.19
MA0035.2	MA0035.2	0.0243
MA0038.1	MA0038.1	0.251
MA0039.2	MA0039.2	0.0175
MA0040.1	MA0040.1	0.961
MA0041.1	MA0041.1	0.206
MA0042.1	MA0042.1	0.863
MA0043.1	MA0043.1	0.545
MA0046.1	MA0046.1	0.0115
MA0047.2	MA0047.2	0.255
MA0048.1	MA0048.1	0.979
MA0050.1	MA0050.1	3.88392e-4
MA0051.1	MA0051.1	0.0625
MA0052.1	MA0052.1	0.0432
MA0055.1	MA0055.1	0.025
MA0057.1	MA0057.1	0.297
MA0058.1	MA0058.1	0.793
MA0059.1	MA0059.1	0.506
MA0060.1	MA0060.1	3.6942e-5
MA0061.1	MA0061.1	0.696
MA0062.2	MA0062.2	0.2
MA0065.2	MA0065.2	0.0281
MA0066.1	MA0066.1	0.746
MA0067.1	MA0067.1	0.29
MA0068.1	MA0068.1	0.301
MA0069.1	MA0069.1	0.581
MA0070.1	MA0070.1	0.0534
MA0071.1	MA0071.1	0.413
MA0072.1	MA0072.1	0.932
MA0073.1	MA0073.1	0.911
MA0074.1	MA0074.1	0.325
MA0076.1	MA0076.1	0.595
MA0077.1	MA0077.1	0.461
MA0078.1	MA0078.1	0.857
MA0079.2	MA0079.2	0.261
MA0080.2	MA0080.2	0.0106
MA0081.1	MA0081.1	0.25
MA0083.1	MA0083.1	0.00442
MA0084.1	MA0084.1	0.108
MA0087.1	MA0087.1	0.567
MA0088.1	MA0088.1	0.793
MA0090.1	MA0090.1	0.00586
MA0091.1	MA0091.1	0.529
MA0092.1	MA0092.1	0.876
MA0093.1	MA0093.1	0.851
MA0099.2	MA0099.2	0.00397
MA0100.1	MA0100.1	0.0666
MA0101.1	MA0101.1	0.577
MA0102.2	MA0102.2	0.0707
MA0103.1	MA0103.1	3.2009e-6
MA0104.2	MA0104.2	0.636
MA0105.1	MA0105.1	0.65
MA0106.1	MA0106.1	0.234
MA0107.1	MA0107.1	0.506
MA0108.2	MA0108.2	5.12514e-13
MA0111.1	MA0111.1	0.131
MA0112.2	MA0112.2	0.123
MA0113.1	MA0113.1	0.572
MA0114.1	MA0114.1	0.088
MA0115.1	MA0115.1	0.6
MA0116.1	MA0116.1	0.793
MA0117.1	MA0117.1	0.405
MA0119.1	MA0119.1	0.827
MA0122.1	MA0122.1	0.65
MA0124.1	MA0124.1	0.914
MA0125.1	MA0125.1	0.406
MA0131.1	MA0131.1	0.145
MA0135.1	MA0135.1	0.0383
MA0136.1	MA0136.1	0.0536
MA0137.2	MA0137.2	0.0668
MA0138.2	MA0138.2	0.49
MA0139.1	MA0139.1	0.302
MA0140.1	MA0140.1	0.851
MA0141.1	MA0141.1	0.0582
MA0142.1	MA0142.1	0.162
MA0143.1	MA0143.1	0.0463
MA0144.1	MA0144.1	0.829
MA0145.1	MA0145.1	0.0555
MA0146.1	MA0146.1	0.0142
MA0147.1	MA0147.1	0.719
MA0148.1	MA0148.1	0.443
MA0149.1	MA0149.1	0.349
MA0150.1	MA0150.1	0.501
MA0152.1	MA0152.1	0.162
MA0153.1	MA0153.1	0.0203
MA0154.1	MA0154.1	0.458
MA0155.1	MA0155.1	0.114
MA0156.1	MA0156.1	0.753
MA0157.1	MA0157.1	0.0648
MA0159.1	MA0159.1	0.0994
MA0160.1	MA0160.1	0.212
MA0162.1	MA0162.1	0.183
MA0163.1	MA0163.1	0.885
MA0164.1	MA0164.1	0.867
MA0258.1	MA0258.1	0.255
MA0259.1	MA0259.1	0.493

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12084

Novel motif	Logo	P-value
1	1	0.617
10	10	0.281
100	100	0.277
101	101	0.0313
102	102	0.295
103	103	0.59
104	104	0.833
105	105	0.131
106	106	0.184
107	107	0.0896
108	108	0.533
109	109	0.00374
11	11	0.367
110	110	0.289
111	111	0.376
112	112	0.788
113	113	0.542
114	114	0.379
115	115	0.0334
116	116	0.517
117	117	0.582
118	118	0.649
119	119	0.613
12	12	0.363
120	120	0.617
121	121	0.478
122	122	0.0992
123	123	0.00472
124	124	0.0326
125	125	0.162
126	126	0.666
127	127	0.55
128	128	0.806
129	129	0.231
13	13	0.143
130	130	0.434
131	131	0.665
132	132	0.124
133	133	0.264
134	134	0.986
135	135	0.154
136	136	0.0217
137	137	0.0377
138	138	0.0778
139	139	0.223
14	14	0.749
140	140	0.629
141	141	0.269
142	142	0.233
143	143	0.928
144	144	0.292
145	145	0.878
146	146	0.0939
147	147	0.762
148	148	0.00384
149	149	0.142
15	15	0.317
150	150	0.292
151	151	0.64
152	152	0.0348
153	153	0.0452
154	154	0.339
155	155	0.237
156	156	0.555
157	157	0.47
158	158	0.628
159	159	0.441
16	16	0.519
160	160	0.229
161	161	0.856
162	162	0.668
163	163	0.518
164	164	0.894
165	165	0.0949
166	166	0.149
167	167	0.0593
168	168	0.621
169	169	0.107
17	17	0.29
18	18	0.94
19	19	0.516
2	2	0.161
20	20	0.902
21	21	0.554
22	22	0.169
23	23	0.925
24	24	0.823
25	25	0.366
26	26	0.101
27	27	0.373
28	28	0.335
29	29	0.553
3	3	0.52
30	30	0.0547
31	31	0.484
32	32	0.323
33	33	0.282
34	34	0.238
35	35	0.0728
36	36	0.849
37	37	0.385
38	38	0.259
39	39	0.757
4	4	0.543
40	40	0.00643
41	41	0.354
42	42	0.586
43	43	0.904
44	44	0.727
45	45	0.221
46	46	0.762
47	47	0.663
48	48	0.459
49	49	0.417
5	5	0.0809
50	50	0.292
51	51	0.675
52	52	0.477
53	53	0.297
54	54	0.922
55	55	0.138
56	56	0.466
57	57	0.431
58	58	0.274
59	59	0.0403
6	6	0.442
60	60	0.574
61	61	0.377
62	62	0.136
63	63	0.497
64	64	0.405
65	65	0.152
66	66	0.477
67	67	0.96
68	68	0.127
69	69	0.0397
7	7	0.79
70	70	0.84
71	71	0.929
72	72	0.63
73	73	0.0121
74	74	0.091
75	75	0.545
76	76	0.276
77	77	0.00237
78	78	0.639
79	79	0.519
8	8	0.48
80	80	0.455
81	81	0.0402
82	82	0.437
83	83	0.618
84	84	0.786
85	85	0.93
86	86	0.906
87	87	0.0254
88	88	0.651
89	89	0.29
9	9	0.577
90	90	3.32272e-4
91	91	0.851
92	92	0.318
93	93	0.442
94	94	0.32
95	95	0.0106
96	96	0.581
97	97	0.914
98	98	0.703
99	99	0.0952

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12084

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000153 human renal glomerular endothelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000666 (fenestrated cell)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
0002188 (glomerular endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0010317 (germ layer / neural crest derived structure)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0001285 (nephron)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000153 (human renal glomerular endothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005923
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005923
+|accession_numbers=CAGE;DRX008105;DRR008977;DRZ000402;DRZ001787;DRZ011752;DRZ013137
+|accession_numbers_RNASeq=sRNA-Seq;DRX036999;DRR041365;DRZ007007
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.32!207.25!HOPX;;chr11:61520075..61520136,+!p1@C11orf9!2.14!279.12!C11orf9;;chr1:201979703..201979721,+!p2@ELF3!2.13!134.68!ELF3;;chr1:201979743..201979762,+!p1@ELF3!2.08!117.93!ELF3;;chr5:2751762..2751784,-!p1@IRX2!1.84!68.38!IRX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.70!78.15!FOXQ1;;chr20:22564895..22564910,-!p1@FOXA2!1.67!46.05!FOXA2;;chr20:22565185..22565223,-!p3@FOXA2!1.56!35.59!FOXA2;;chr6:34204921..34204939,+!p3@HMGA1!1.51!905.75!HMGA1;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.61!HIF3A;;chr18:19749386..19749404,+!p2@GATA6!1.46!39.08!GATA6;;chr20:42295745..42295765,+!p1@MYBL2!1.43!406.12!MYBL2;;chr14:38064429..38064486,-!p1@FOXA1!1.39!23.73!FOXA1;;chr19:17356189..17356221,-!p2@NR2F6!1.38!36.98!NR2F6;;chr1:209979467..209979494,-!p1@IRF6!1.38!25.82!IRF6;;chr18:19749541..19749557,+!p1@GATA6!1.36!67.69!GATA6;;chr12:7079780..7079791,-!p2@PHB2!1.27!91.41!PHB2;;chr5:2751785..2751808,-!p2@IRX2!1.25!16.75!IRX2;;chr5:3595977..3595999,+!p1@IRX1!1.25!16.75!IRX1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.23!138.86!PPP1R13L;;chr1:935467..935484,-!p1@HES4!1.23!70.48!HES4;;chr3:52001448..52001478,-!p2@PCBP4!1.21!209.34!PCBP4;;chr1:23885981..23886002,-!p1@ID3!1.19!2477.19!ID3;;chr6:34204672..34204692,+!p1@HMGA1!1.19!1595.17!HMGA1;;chr2:5832508..5832524,+!p1@SOX11!1.19!14.65!SOX11;;chr4:188916918..188916942,+!p1@ZFP42!1.17!13.96!ZFP42;;chr7:1577899..1577943,+!p3@MAFK!1.17!13.96!MAFK;;chr14:36989358..36989378,-!p3@NKX2-1!1.17!13.96!NKX2-1;;chr14:36989427..36989442,-!p1@NKX2-1!1.17!13.96!NKX2-1;;chr9:35732647..35732678,+!p2@CREB3!1.16!73.97!CREB3;;chr1:6479968..6479986,-!p1@HES2!1.15!13.26!HES2;;chr6:19837592..19837621,+!p1@ID4!1.14!77.46!ID4;;chr19:45579725..45579743,-!p1@ZNF296!1.14!57.22!ZNF296;;chr20:30193083..30193098,+!p1@ID1!1.13!994.37!ID1;;chr20:32274179..32274213,-!p1@E2F1!1.12!80.25!E2F1;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.86!GRHL2;;chr18:19749504..19749515,+!p5@GATA6!1.11!11.86!GATA6;;chr17:41623692..41623715,-!p1@ETV4!1.09!48.15!ETV4;;chr14:35872962..35873025,-!p3@NFKBIA!1.09!28.61!NFKBIA;;chr18:19749517..19749531,+!p3@GATA6!1.09!20.24!GATA6;;chr17:46675558..46675577,-!p2@HOXB6!1.09!11.16!HOXB6;;chr19:49865646..49865718,-!p1@TEAD2!1.07!92.81!TEAD2;;chr1:8926441..8926473,-!p10@ENO1!1.07!16.05!ENO1;;chr11:65686732..65686756,+!p2@DRAP1!1.06!44.66!DRAP1;;chr6:134210243..134210257,+!p1@TCF21!1.06!10.47!TCF21;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.86!BNC1;;chr16:29818160..29818188,+!p6@MAZ!1.04!46.75!MAZ;;chr20:42295713..42295738,+!p2@MYBL2!1.03!57.92!MYBL2;;chr6:44233252..44233296,-!p1@NFKBIE!1.01!92.81!NFKBIE;;chr3:52001396..52001425,-!p4@PCBP4!1.01!16.75!PCBP4;;chr17:3571863..3571881,-!p1@TAX1BP3!1.00!655.24!TAX1BP3;;chr1:26496382..26496457,+!p1@ZNF593!1.00!554.75!ZNF593;;chr3:52001426..52001447,-!p3@PCBP4!1.00!25.82!PCBP4;;chr22:19748231..19748317,+!p1@TBX1!1.00!9.07!TBX1;;chr17:36105042..36105060,-!p1@HNF1B!1.00!9.07!HNF1B;;chr11:34642612..34642646,+!p1@EHF!1.00!9.07!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.00!9.07!IRF6;;chr20:18038521..18038571,-!p1@OVOL2!1.00!9.07!OVOL2;;chr20:22565370..22565388,-!p2@FOXA2!1.00!9.07!FOXA2;;chr11:65686802..65686818,+!p6@DRAP1!0.99!15.35!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.97!23.03!HMGA2;;chr17:7493405..7493419,-!p1@SOX15!0.97!8.37!SOX15;;chr16:8962853..8962878,-!p1@CARHSP1!0.96!487.07!CARHSP1;;chr6:41514078..41514158,+!p1@FOXP4!0.96!76.06!FOXP4;;chr19:926055..926068,+!p2@ARID3A!0.93!16.75!ARID3A;;chr19:17356436..17356481,-!p3@NR2F6!0.93!13.26!NR2F6;;chr2:85981222..85981259,+!p2@ATOH8!0.93!12.56!ATOH8;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.86!HMGA2;;chr1:23886132..23886156,-!p2@ID3!0.92!8.37!ID3;;chr1:8938709..8938720,-!p3@ENO1!0.91!361.46!ENO1;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.47!HMGA2;;chr1:8926369..8926385,-!p12@ENO1!0.91!9.77!ENO1;;chr17:46671108..46671147,-!p1@HOXB5!0.90!6.98!HOXB5;;chr5:3595934..3595957,+!p2@IRX1!0.90!6.98!IRX1;;chr7:97840743..97840786,+!p1@BHLHA15!0.90!6.98!BHLHA15;;chr6:41514305..41514359,+!p2@FOXP4!0.89!59.31!FOXP4;;chr19:1592714..1592762,-!p1@MBD3!0.89!53.73!MBD3;;chr10:104155480..104155534,+!p2@NFKB2!0.88!45.36!NFKB2;;chr1:8483878..8483907,-!p4@RERE!0.88!26.52!RERE;;chr12:54785074..54785122,-!p2@ZNF385A!0.88!10.47!ZNF385A;;chr19:6424783..6424802,-!p2@KHSRP!0.87!136.77!KHSRP;;chr1:26496459..26496470,+!p2@ZNF593!0.87!12.56!ZNF593;;chrX:48900782..48900793,-!p3@TFE3!0.87!12.56!TFE3;;chr17:38465413..38465438,+!p5@RARA!0.87!10.47!RARA;;chr19:56632592..56632670,-!p1@ZNF787!0.86!149.33!ZNF787;;chr19:46367576..46367592,+!p1@FOXA3!0.86!6.28!FOXA3;;chr19:46800289..46800327,+!p2@HIF3A!0.86!6.28!HIF3A;;chr14:36988882..36988895,-!p13@NKX2-1!0.86!6.28!NKX2-1;;chr8:102504690..102504704,+!p3@GRHL2!0.86!6.28!GRHL2;;chr10:135122380..135122458,+!p1@ZNF511!0.85!195.38!ZNF511;;chr14:75894714..75894733,+!p1@JDP2!0.85!183.52!JDP2;;chr16:30537839..30537929,-!p1@ZNF768!0.85!40.47!ZNF768;;chr19:926001..926046,+!p1@ARID3A!0.85!22.33!ARID3A;;chr11:47270436..47270464,+!p2@NR1H3!0.85!13.26!NR1H3;;chr12:2986206..2986258,-!p2@FOXM1!0.84!37.68!FOXM1;;chr1:8938736..8938756,-!p1@ENO1!0.83!6731.69!ENO1;;chr11:65686952..65686975,+!p5@DRAP1!0.83!34.19!DRAP1;;chr16:8962544..8962584,-!p2@CARHSP1!0.83!13.96!CARHSP1;;chr2:85980951..85981004,+!p1@ATOH8!0.83!9.77!ATOH8;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.37!IRX3;;chr9:35732514..35732530,+!p5@CREB3!0.83!8.37!CREB3;;chr19:1652555..1652568,-!p2@TCF3!0.82!24.42!TCF3;;chr12:80084737..80084763,-!p3@PAWR!0.82!22.33!PAWR;;chr1:8934931..8934947,-!p4@ENO1!0.82!19.54!ENO1;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.37!IRX5;;chr17:36105074..36105086,-!p2@HNF1B!0.82!5.58!HNF1B;;chr17:45928443..45928473,-!p2@SP6!0.82!5.58!SP6;;chr2:122042770..122042785,-!p1@TFCP2L1!0.82!5.58!TFCP2L1;;chr12:3068634..3068656,+!p5@TEAD4!0.82!5.58!TEAD4;;chr10:104154246..104154347,+!p3@NFKB2!0.81!36.29!NFKB2;;chr1:154975258..154975330,+!p1@ZBTB7B!0.81!21.63!ZBTB7B;;chr11:65667846..65667868,-!p1@FOSL1!0.80!152.82!FOSL1;;chr10:104155455..104155479,+!p1@NFKB2!0.80!85.13!NFKB2;;chr19:17356697..17356762,-!p1@NR2F6!0.80!78.15!NR2F6;;chr17:61920280..61920343,-!p2@SMARCD2!0.80!55.82!SMARCD2;;chr12:3068544..3068597,+!p1@TEAD4!0.80!34.19!TEAD4;;chr17:46622205..46622218,-!p3@HOXB2!0.80!6.28!HOXB2;;chr19:1652575..1652621,-!p1@TCF3!0.79!217.71!TCF3;;chr19:45504688..45504782,+!p1@RELB!0.79!34.19!RELB;;chr2:70314240..70314256,+!p4@PCBP1!0.79!11.16!PCBP1;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.79!9.07!ELK4;;chr12:7079807..7079848,-!p1@PHB2!0.78!979.02!PHB2;;chr11:64073022..64073056,+!p1@ESRRA!0.78!65.59!ESRRA;;chr15:74833584..74833626,+!p1@ARID3B!0.78!12.56!ARID3B;;chr6:34204642..34204664,+!p2@HMGA1!0.77!725.02!HMGA1;;chr16:29817789..29817838,+!p2@MAZ!0.77!73.27!MAZ;;chr16:86544113..86544145,+!p1@FOXF1!0.77!6.28!FOXF1;;chr10:135122868..135122893,+!p3@ZNF511!0.77!4.88!ZNF511;;chr14:36989379..36989390,-!p8@NKX2-1!0.77!4.88!NKX2-1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.77!4.88!ZSCAN1;;chr2:85981107..85981120,+!p3@ATOH8!0.77!4.88!ATOH8;;chr4:149363494..149363543,-!p1@NR3C2!0.77!4.88!NR3C2;;chr17:17740287..17740307,-!p1@SREBF1!0.76!137.47!SREBF1;;chr19:56652643..56652683,+!p1@ZNF444!0.76!28.61!ZNF444;;chr8:145669791..145669834,-!p1@TONSL!0.76!14.65!TONSL;;chr22:42229210..42229229,+!p3@SREBF2!0.76!11.86!SREBF2;;chr10:48355030..48355090,+!p1@ZNF488!0.76!6.28!ZNF488;;chr11:615942..615957,-!p1@IRF7!0.75!48.15!IRF7;;chr20:32274150..32274166,-!p2@E2F1!0.75!9.07!E2F1;;chr9:35732592..35732640,+!p1@CREB3!0.74!65.59!CREB3;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.74!50.24!GLIS2;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.35!TBX2;;chr19:3366625..3366629,+!p4@NFIC!0.74!6.98!NFIC;;chr12:125002739..125002756,-!p6@NCOR2!0.74!6.98!NCOR2;;chr14:75988771..75988826,+!p1@BATF!0.74!6.28!BATF;;chr19:19302931..19302974,-!p1@MEF2BNB-MEF2B,p1@MEF2BNB,p1@MEF2B!0.73!120.72!MEF2B;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.05!TCF19;;chr12:66218598..66218645,+!p2@HMGA2!0.73!22.33!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.73!9.07!HMGA2;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.28!TEAD2;;chr19:19303731..19303783,+!p1@RFXANK!0.72!112.35!RFXANK;;chr17:38498402..38498445,+!p3@RARA!0.72!16.75!RARA;;chr2:169312600..169312606,+!p2@CERS6!0.72!6.98!CERS6;;chr11:62369806..62369837,-!p8@MTA2!0.72!5.58!MTA2;;chr11:65687222..65687240,+!p7@DRAP1!0.72!5.58!DRAP1;;chr20:48807351..48807384,+!p1@CEBPB!0.71!484.27!CEBPB;;chr19:1863568..1863586,-!p1@KLF16!0.71!153.52!KLF16;;chr6:35464817..35464894,-!p1@TEAD3!0.71!71.87!TEAD3;;chr12:132628963..132629027,+!p1@NOC4L!0.71!67.69!NOC4L;;chr2:46524897..46524911,+!p2@EPAS1!0.71!12.56!EPAS1;;chr17:41623009..41623053,-!p4@ETV4!0.71!6.98!ETV4;;chr16:54320158..54320200,-!p5@IRX3!0.71!6.28!IRX3;;chr20:6748325..6748352,+!p1@BMP2!0.71!6.28!BMP2;;chr19:58545369..58545404,+!p2@ZSCAN1!0.71!4.19!ZSCAN1;;chr1:154975229..154975247,+!p6@ZBTB7B!0.71!4.19!ZBTB7B;;chr14:38064590..38064606,-!p2@FOXA1!0.71!4.19!FOXA1;;chr3:69915385..69915438,+!p3@MITF!0.71!4.19!MITF;;chr16:29817841..29817865,+!p1@MAZ!0.70!96.99!MAZ;;chr16:29817665..29817719,+!p3@MAZ!0.70!69.78!MAZ;;chr22:42229246..42229270,+!p2@SREBF2!0.70!57.22!SREBF2;;chr13:73633131..73633149,+!p1@KLF5!0.70!48.15!KLF5;;chr22:21356378..21356422,-!p2@THAP7!0.70!39.77!THAP7;;chr17:17740330..17740349,-!p3@SREBF1!0.70!30.01!SREBF1;;chr2:242576641..242576731,-!p2@THAP4!0.70!17.45!THAP4;;chr12:3069037..3069119,+!p2@TEAD4!0.70!15.35!TEAD4;;chr1:935398..935465,-!p2@HES4!0.70!9.07!HES4;;chrX:129244655..129244697,-!p4@ELF4!0.70!7.68!ELF4;;chr16:29818199..29818216,+!p11@MAZ!0.70!6.98!MAZ;;chr19:13213662..13213686,-!p1@LYL1!0.70!6.28!LYL1;;chr21:36260773..36260804,-!p7@RUNX1!0.70!5.58!RUNX1;;chr11:65686855..65686946,+!p1@DRAP1!0.69!338.43!DRAP1;;chr6:34204973..34204990,+!p4@HMGA1!0.69!59.31!HMGA1;;chr5:92918919..92918942,+!p1@NR2F1!0.69!19.54!NR2F1;;chr17:41623667..41623682,-!p8@ETV4!0.69!4.19!ETV4;;chr19:1863591..1863611,-!p2@KLF16!0.68!41.17!KLF16;;chr7:1570322..1570360,+!p1@MAFK!0.68!36.29!MAFK;;chr8:49833948..49833973,-!p2@SNAI2!0.68!27.21!S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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000082;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000060;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
 |ffid_belonging_in_development=CL:0000222
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11590-120G6
 |is_a=EFO:0002091;;FF:0000153
 |is_obsolete=
+|library_id=CNhs12084
+|library_id_phase_based=2:CNhs12084
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11590
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.CTTGTA.11590
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11590
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 |name=Alveolar Epithelial Cells, donor2
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12084,LSID838,release011,COMPLETED
-|profile_rnaseq=,,,
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 |rna_box=120
 |rna_catalog_number=SC3205
@@ Line 60: / Line 82: @@
 |rna_tube_id=120G6
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10002.CTTGTA
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 82: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11590-120G6;search_select_hide=table117:FF:11590-120G6
 }}

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FF:11590-120G6: Difference between revisions

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Latest revision as of 18:10, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0