FFCP PHASE1:Hg19::chr2:166150556..166150594,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6326 | |EntrezGene=6326 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10588 | |HGNC=10588 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=2bp_to_ENST00000480032_5end | |association_with_transcript=2bp_to_ENST00000480032_5end | ||
|cluster_id=chr2:166150556..166150594,+ | |||
|coexpression_cluster_id=C16 | |coexpression_cluster_id=C16 | ||
|description=CAGE_peak_3_at_SCN2A_5end | |description=CAGE_peak_3_at_SCN2A_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000055!6.18e-12!180;CL:0000057!9.56e-07!75 | |ontology_enrichment_celltype=CL:0000055!6.18e-12!180;CL:0000057!9.56e-07!75 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.07e-10;82 | |ontology_enrichment_development_v019=UBERON:0006601;3.07e-10;82 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001869;5.66e-37;32!UBERON:0001893;1.36e-35;34!UBERON:0003528;1.76e-35;34!UBERON:0002020;1.76e-35;34!UBERON:0002791;1.54e-34;32!UBERON:0002619;4.19e-34;22!UBERON:0000956;1.16e-31;25!UBERON:0000203;1.16e-31;25!UBERON:0001950;4.02e-31;20!UBERON:0002780;4.17e-28;41!UBERON:0001890;4.17e-28;41!UBERON:0000073;3.35e-27;53!UBERON:0002616;3.35e-27;53!UBERON:0001017;1.59e-20;75!UBERON:0000955;1.26e-18;68!UBERON:0001016;1.11e-17;83!UBERON:0002420;2.99e-11;9!UBERON:0007245;2.99e-11;9!UBERON:0010009;2.99e-11;9!UBERON:0010011;2.99e-11;9!UBERON:0000454;2.99e-11;9!UBERON:0000200;4.87e-11;6!UBERON:0000125;1.11e-10;9!UBERON:0002308;1.11e-10;9!UBERON:0001872;1.51e-09;5!UBERON:0004733;2.47e-09;12!UBERON:0002028;2.47e-09;12!UBERON:0001871;2.62e-09;6!UBERON:0002021;2.70e-09;5!UBERON:0000349;3.26e-09;5!UBERON:0002298;9.40e-09;6!UBERON:0004732;1.87e-08;13!UBERON:0009663;3.22e-08;7!UBERON:0011216;1.08e-07;132!UBERON:0000369;1.89e-07;4!UBERON:0002435;1.89e-07;4!UBERON:0000204;1.89e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0001869;5.66e-37;32!UBERON:0001893;1.36e-35;34!UBERON:0003528;1.76e-35;34!UBERON:0002020;1.76e-35;34!UBERON:0002791;1.54e-34;32!UBERON:0002619;4.19e-34;22!UBERON:0000956;1.16e-31;25!UBERON:0000203;1.16e-31;25!UBERON:0001950;4.02e-31;20!UBERON:0002780;4.17e-28;41!UBERON:0001890;4.17e-28;41!UBERON:0000073;3.35e-27;53!UBERON:0002616;3.35e-27;53!UBERON:0001017;1.59e-20;75!UBERON:0000955;1.26e-18;68!UBERON:0001016;1.11e-17;83!UBERON:0002420;2.99e-11;9!UBERON:0007245;2.99e-11;9!UBERON:0010009;2.99e-11;9!UBERON:0010011;2.99e-11;9!UBERON:0000454;2.99e-11;9!UBERON:0000200;4.87e-11;6!UBERON:0000125;1.11e-10;9!UBERON:0002308;1.11e-10;9!UBERON:0001872;1.51e-09;5!UBERON:0004733;2.47e-09;12!UBERON:0002028;2.47e-09;12!UBERON:0001871;2.62e-09;6!UBERON:0002021;2.70e-09;5!UBERON:0000349;3.26e-09;5!UBERON:0002298;9.40e-09;6!UBERON:0004732;1.87e-08;13!UBERON:0009663;3.22e-08;7!UBERON:0011216;1.08e-07;132!UBERON:0000369;1.89e-07;4!UBERON:0002435;1.89e-07;4!UBERON:0000204;1.89e-07;4 | ||
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| ||
|short_description=p3@SCN2A | |short_description=p3@SCN2A | ||
}} | }} |
Latest revision as of 23:34, 17 September 2015
Short description: | p3@SCN2A |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SCN2A_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | 2bp_to_ENST00000480032_5end |
EntrezGene: | SCN2A |
HGNC: | 10588 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data