FFCP PHASE1:Hg19::chr3:181429641..181429650,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:181429641..181429650,+
|short_description=p3@SOX2
|description=CAGE_peak_3_at_SOX2_5end
|association_with_transcript=-61bp_to_NM_003106_5end
|EntrezGene=6...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6657 | |EntrezGene=6657 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11195 | |HGNC=11195 | ||
|TSSclassifier=strong | |||
|UniProt=P48431 | |UniProt=P48431 | ||
|association_with_transcript=-61bp_to_NM_003106_5end | |||
|cluster_id=chr3:181429641..181429650,+ | |||
|coexpression_cluster_id=C1056 | |||
|description=CAGE_peak_3_at_SOX2_5end | |||
|id=chr3:181429641..181429650,+ | |||
|ontology_enrichment_celltype=CL:0002319!5.69e-21!25;CL:0000047!2.67e-12!8;CL:0000133!9.57e-12!59;CL:0000095!2.73e-11!17;CL:0000123!2.73e-11!17;CL:0000128!1.54e-10!7;CL:0000126!1.54e-10!7;CL:0000127!1.54e-10!7;CL:0002453!1.54e-10!7;CL:0000540!2.66e-09!6;CL:0000031!2.66e-09!6;CL:0000404!2.66e-09!6;CL:0000221!3.30e-09!71;CL:0000243!3.44e-09!15;CL:0000125!3.44e-09!15;CL:0000030!3.44e-09!15;CL:0000339!3.44e-09!15;CL:0002322!3.08e-07!5;CL:0000333!7.10e-07!41 | |||
|ontology_enrichment_celltype_v019=CL:0002319;3.75e-17;25!CL:0000540;1.34e-11;6!CL:0000404;1.34e-11;6!CL:0000128;2.82e-10;7!CL:0000126;2.82e-10;7!CL:0000127;2.82e-10;7!CL:0002605;9.67e-10;3!CL:0002322;4.21e-08;5!CL:0000047;3.95e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.67e-17,25;CL:0000047,9.15e-17,8;CL:0000540,1.57e-11,6;CL:0000031,1.57e-11,6;CL:0000404,1.57e-11,6;CL:0000128,2.99e-10,7;CL:0000126,2.99e-10,7;CL:0000127,2.99e-10,7;CL:0002453,2.99e-10,7;CL:0000133,6.43e-10,59;CL:0002605,9.69e-10,3;CL:0002322,6.79e-08,5;CL:0000221,1.96e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0006601;8.18e-12;82!CL:0000031;1.34e-11;6!UBERON:0006215;1.25e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0003528;8.35e-50;34!UBERON:0002020;8.35e-50;34!UBERON:0002791;1.84e-49;32!UBERON:0001893;2.75e-49;34!UBERON:0001869;2.33e-48;32!UBERON:0000073;3.90e-47;53!UBERON:0002616;3.90e-47;53!UBERON:0002780;6.04e-44;41!UBERON:0001890;6.04e-44;41!UBERON:0000956;1.81e-38;25!UBERON:0000203;1.81e-38;25!UBERON:0002619;5.49e-31;22!UBERON:0000955;1.11e-30;68!UBERON:0001017;3.31e-30;75!UBERON:0001950;5.36e-30;20!UBERON:0001016;1.07e-27;83!UBERON:0000125;9.60e-23;9!UBERON:0002308;9.60e-23;9!UBERON:0004733;9.47e-21;12!UBERON:0002028;9.47e-21;12!UBERON:0004732;5.50e-19;13!UBERON:0002420;2.65e-18;9!UBERON:0007245;2.65e-18;9!UBERON:0010009;2.65e-18;9!UBERON:0010011;2.65e-18;9!UBERON:0000454;2.65e-18;9!UBERON:0009663;5.61e-18;7!UBERON:0002680;6.61e-18;9!UBERON:0001895;6.61e-18;9!UBERON:0000200;2.28e-11;6!UBERON:0002298;2.94e-11;6!UBERON:0002037;3.66e-11;6!UBERON:0000369;6.57e-11;4!UBERON:0002435;6.57e-11;4!UBERON:0000204;6.57e-11;4!UBERON:0011216;2.57e-10;132!UBERON:0001870;4.05e-09;3!UBERON:0001872;5.68e-09;5!UBERON:0007023;6.22e-09;114!UBERON:0002021;7.48e-09;5!UBERON:0000988;1.46e-08;3!UBERON:0005383;1.46e-08;3!UBERON:0005382;1.46e-08;3!UBERON:0001871;7.52e-07;6!UBERON:0002702;9.21e-07;2 | |||
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| ||
|short_description=p3@SOX2 | |||
}} | }} |
Latest revision as of 22:08, 16 September 2015
Short description: | p3@SOX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SOX2_5end |
Coexpression cluster: | C1056_small_Neural_Astrocyte_teratocarcinoma_H9_hippocampus_testicular |
Association with transcript: | -61bp_to_NM_003106_5end |
EntrezGene: | SOX2 |
HGNC: | 11195 |
UniProt: | P48431 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.67e-17 | 25 |
neuronal stem cell | 9.15e-17 | 8 |
neuron | 1.57e-11 | 6 |
neuroblast | 1.57e-11 | 6 |
electrically signaling cell | 1.57e-11 | 6 |
oligodendrocyte | 2.99e-10 | 7 |
macroglial cell | 2.99e-10 | 7 |
astrocyte | 2.99e-10 | 7 |
oligodendrocyte precursor cell | 2.99e-10 | 7 |
neurectodermal cell | 6.43e-10 | 59 |
astrocyte of the cerebral cortex | 9.69e-10 | 3 |
embryonic stem cell | 6.79e-08 | 5 |
ectodermal cell | 1.96e-07 | 72 |