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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005565
|accession_numbers=CAGE;DRX008426;DRR009298;DRZ000723;DRZ002108;DRZ012073;DRZ013458
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.85!69.70!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!1.84!67.85!HNF1B;;chr1:201979743..201979762,+!p1@ELF3!1.73!52.37!ELF3;;chr12:66218255..66218304,+!p3@HMGA2!1.70!126.15!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.67!203.17!HMGA2;;chr1:201979703..201979721,+!p2@ELF3!1.66!44.51!ELF3;;chr11:34642612..34642646,+!p1@EHF!1.65!43.82!EHF;;chr1:209979467..209979494,-!p1@IRF6!1.59!42.28!IRF6;;chr17:46703687..46703740,-!p1@HOXB9!1.54!33.58!HOXB9;;chr3:69811858..69811881,+!p5@MITF!1.53!33.12!MITF;;chr3:69811882..69811898,+!p6@MITF!1.41!24.72!MITF;;chr17:46682321..46682362,-!p1@HOXB6!1.40!24.26!HOXB6;;chr17:35294075..35294102,+!p1@ENST00000559335!1.40!23.95!LHX1;;chr16:86600426..86600441,+!p1@FOXC2!1.38!55.30!FOXC2;;chr12:66218183..66218209,+!p4@HMGA2!1.34!40.05!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.33!29.11!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.33!24.88!TFAP2A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.31!19.25!POU3F3;;chr12:66218003..66218018,+!p9@HMGA2!1.29!22.41!HMGA2;;chr17:46703826..46703845,-!p3@HOXB9!1.28!18.25!HOXB9;;chr6:10412600..10412637,-!p1@TFAP2A!1.27!29.34!TFAP2A;;chr7:27205136..27205164,-!p1@HOXA9!1.26!17.10!HOXA9;;chr12:66218378..66218401,+!p6@HMGA2!1.16!20.72!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!1.15!13.25!HOXA9;;chr6:10415484..10415508,-!p3@TFAP2A!1.13!12.63!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!1.12!113.37!HMGA2;;chr10:64018918..64018936,+!p2@ZNF365!1.11!12.01!ZNF365;;chr17:46622440..46622477,-!p5@HOXB2!1.08!12.48!HOXB2;;chr17:46622205..46622218,-!p3@HOXB2!1.07!12.55!HOXB2;;chr6:34204921..34204939,+!p3@HMGA1!1.06!317.53!HMGA1;;chr19:53496768..53496799,-!p1@ZNF702P!1.05!16.02!ZNF702P;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.86!BNC1;;chr12:66218443..66218461,+!p8@HMGA2!1.04!12.78!HMGA2;;chr2:5832508..5832524,+!p1@SOX11!1.04!10.09!SOX11;;chr7:27153454..27153469,-!p2@HOXA3!1.04!9.86!HOXA3;;chr7:26191809..26191890,+!p1@NFE2L3!1.03!49.29!NFE2L3;;chr1:6479968..6479986,-!p1@HES2!0.98!8.55!HES2;;chr2:176994408..176994492,+!p1@HOXD8!0.97!8.24!HOXD8;;chr10:8096631..8096660,+!p1@GATA3!0.96!9.86!GATA3;;chr1:24645832..24645853,+!p1@GRHL3!0.96!8.16!GRHL3;;chr7:27192185..27192209,-!p1@HOXA3!0.96!8.09!HOXA3;;chr1:209979411..209979433,-!p2@IRF6!0.94!7.78!IRF6;;chr6:34204672..34204692,+!p1@HMGA1!0.93!884.83!HMGA1;;chr2:177053386..177053402,+!p1@HOXD1!0.93!7.55!HOXD1;;chr12:66357214..66357233,+!p13@HMGA2!0.92!7.24!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!0.91!10.86!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!0.90!10.32!HOXB7;;chr17:46675558..46675577,-!p2@HOXB6!0.90!7.01!HOXB6;;chr7:27196217..27196246,-!p2@HOXA7!0.90!6.93!HOXA7;;chr12:66218420..66218439,+!p12@HMGA2!0.89!6.78!HMGA2;;chr7:27224842..27224872,-!p1@HOXA11!0.89!6.70!HOXA11;;chr7:27183291..27183324,-!p1@HOXA5!0.86!6.24!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!0.85!6.01!HOXA5;;chr12:66218152..66218174,+!p10@HMGA2!0.84!6.47!HMGA2;;chr7:27224795..27224840,-!p2@HOXA11!0.84!5.93!HOXA11;;chr11:65554528..65554546,+!p1@OVOL1!0.84!5.85!OVOL1;;chr16:51185172..51185197,-!p1@SALL1!0.84!5.85!SALL1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.84!5.85!POU3F3;;chr17:46622229..46622257,-!p6@HOXB2!0.83!6.78!HOXB2;;chr2:176969097..176969109,+!p3@HOXD11!0.81!5.39!HOXD11;;chr12:54447599..54447630,+!p3@HOXC4!0.80!6.62!HOXC4;;chr1:151032860..151032918,+!p1@MLLT11!0.79!66.93!MLLT11;;chr12:54393880..54393962,+!p1@HOXC9!0.79!5.24!HOXC9;;chr1:24645921..24645973,+!p2@GRHL3!0.78!5.08!GRHL3;;chrY:21906594..21906622,-!p1@KDM5D!0.78!5.08!KDM5D;;chr11:34642656..34642667,+!p2@EHF!0.77!4.85!EHF;;chr12:54378923..54378966,+!p1@HOXC10!0.77!4.85!HOXC10;;chr5:72744594..72744609,-!p1@FOXD1!0.76!23.72!FOXD1;;chr10:102505493..102505546,+!p2@PAX2!0.76!4.70!PAX2;;chr17:70117153..70117174,+!p1@SOX9!0.75!53.22!SOX9;;chr12:96588219..96588263,+!p2@ELK3!0.75!36.51!ELK3;;chr11:65667884..65667895,-!p2@FOSL1!0.75!19.72!FOSL1;;chr6:1312325..1312340,+!p1@FOXQ1!0.75!7.93!FOXQ1;;chr16:86600870..86600921,+!p2@FOXC2!0.75!4.62!FOXC2;;chr20:6748325..6748352,+!p1@BMP2!0.74!6.85!BMP2;;chr6:10412576..10412599,-!p5@TFAP2A!0.74!4.54!TFAP2A;;chr12:66358080..66358094,+!p15@HMGA2!0.74!4.47!HMGA2;;chr13:73633131..73633149,+!p1@KLF5!0.73!52.29!KLF5;;chr10:119303078..119303169,+!p2@EMX2!0.73!4.39!EMX2;;chr12:66218469..66218477,+!p16@HMGA2!0.73!4.31!HMGA2;;chr19:53496806..53496848,-!p2@ZNF702P!0.71!6.47!ZNF702P;;chr5:2751762..2751784,-!p1@IRX2!0.71!4.16!IRX2;;chr17:46703942..46703964,-!p4@HOXB9!0.71!4.08!HOXB9;;chr3:5021268..5021282,+!p4@BHLHE40!0.70!8.78!BHLHE40;;chr21:38071430..38071456,+!p1@SIM2!0.70!4.00!SIM2;;chr6:21597765..21597779,+!p2@SOX4!0.69!36.27!SOX4;;chr3:141043020..141043049,+!p17@ZBTB38!0.69!3.93!ZBTB38;;chr7:28448965..28448994,+!p2@CREB5!0.68!15.02!CREB5;;chr7:27213893..27213954,-!p1@HOXA10!0.68!3.77!HOXA10;;chr12:80084303..80084332,-!p1@PAWR!0.67!25.03!PAWR;;chr5:72744445..72744466,-!p2@FOXD1!0.67!6.62!FOXD1;;chr11:32457075..32457095,-!p1@WT1!0.67!3.70!WT1;;chr12:80084737..80084763,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|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.85!69.70!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!1.84!67.85!HNF1B;;chr1:201979743..201979762,+!p1@ELF3!1.73!52.37!ELF3;;chr12:66218255..66218304,+!p3@HMGA2!1.70!126.15!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.67!203.17!HMGA2;;chr1:201979703..201979721,+!p2@ELF3!1.66!44.51!ELF3;;chr11:34642612..34642646,+!p1@EHF!1.65!43.82!EHF;;chr1:209979467..209979494,-!p1@IRF6!1.59!42.28!IRF6;;chr17:46703687..46703740,-!p1@HOXB9!1.54!33.58!HOXB9;;chr3:69811858..69811881,+!p5@MITF!1.53!33.12!MITF;;chr3:69811882..69811898,+!p6@MITF!1.41!24.72!MITF;;chr17:46682321..46682362,-!p1@HOXB6!1.40!24.26!HOXB6;;chr17:35294075..35294102,+!p1@ENST00000559335!1.40!23.95!LHX1;;chr16:86600426..86600441,+!p1@FOXC2!1.38!55.30!FOXC2;;chr12:66218183..66218209,+!p4@HMGA2!1.34!40.05!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.33!29.11!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.33!24.88!TFAP2A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.31!19.25!POU3F3;;chr12:66218003..66218018,+!p9@HMGA2!1.29!22.41!HMGA2;;chr17:46703826..46703845,-!p3@HOXB9!1.28!18.25!HOXB9;;chr6:10412600..10412637,-!p1@TFAP2A!1.27!29.34!TFAP2A;;chr7:27205136..27205164,-!p1@HOXA9!1.26!17.10!HOXA9;;chr12:66218378..66218401,+!p6@HMGA2!1.16!20.72!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!1.15!13.25!HOXA9;;chr6:10415484..10415508,-!p3@TFAP2A!1.13!12.63!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!1.12!113.37!HMGA2;;chr10:64018918..64018936,+!p2@ZNF365!1.11!12.01!ZNF365;;chr17:46622440..46622477,-!p5@HOXB2!1.08!12.48!HOXB2;;chr17:46622205..46622218,-!p3@HOXB2!1.07!12.55!HOXB2;;chr6:34204921..34204939,+!p3@HMGA1!1.06!317.53!HMGA1;;chr19:53496768..53496799,-!p1@ZNF702P!1.05!16.02!ZNF702P;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.86!BNC1;;chr12:66218443..66218461,+!p8@HMGA2!1.04!12.78!HMGA2;;chr2:5832508..5832524,+!p1@SOX11!1.04!10.09!SOX11;;chr7:27153454..27153469,-!p2@HOXA3!1.04!9.86!HOXA3;;chr7:26191809..26191890,+!p1@NFE2L3!1.03!49.29!NFE2L3;;chr1:6479968..6479986,-!p1@HES2!0.98!8.55!HES2;;chr2:176994408..176994492,+!p1@HOXD8!0.97!8.24!HOXD8;;chr10:8096631..8096660,+!p1@GATA3!0.96!9.86!GATA3;;chr1:24645832..24645853,+!p1@GRHL3!0.96!8.16!GRHL3;;chr7:27192185..27192209,-!p1@HOXA3!0.96!8.09!HOXA3;;chr1:209979411..209979433,-!p2@IRF6!0.94!7.78!IRF6;;chr6:34204672..34204692,+!p1@HMGA1!0.93!884.83!HMGA1;;chr2:177053386..177053402,+!p1@HOXD1!0.93!7.55!HOXD1;;chr12:66357214..66357233,+!p13@HMGA2!0.92!7.24!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!0.91!10.86!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!0.90!10.32!HOXB7;;chr17:46675558..46675577,-!p2@HOXB6!0.90!7.01!HOXB6;;chr7:27196217..27196246,-!p2@HOXA7!0.90!6.93!HOXA7;;chr12:66218420..66218439,+!p12@HMGA2!0.89!6.78!HMGA2;;chr7:27224842..27224872,-!p1@HOXA11!0.89!6.70!HOXA11;;chr7:27183291..27183324,-!p1@HOXA5!0.86!6.24!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!0.85!6.01!HOXA5;;chr12:66218152..66218174,+!p10@HMGA2!0.84!6.47!HMGA2;;chr7:27224795..27224840,-!p2@HOXA11!0.84!5.93!HOXA11;;chr11:65554528..65554546,+!p1@OVOL1!0.84!5.85!OVOL1;;chr16:51185172..51185197,-!p1@SALL1!0.84!5.85!SALL1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.84!5.85!POU3F3;;chr17:46622229..46622257,-!p6@HOXB2!0.83!6.78!HOXB2;;chr2:176969097..176969109,+!p3@HOXD11!0.81!5.39!HOXD11;;chr12:54447599..54447630,+!p3@HOXC4!0.80!6.62!HOXC4;;chr1:151032860..151032918,+!p1@MLLT11!0.79!66.93!MLLT11;;chr12:54393880..54393962,+!p1@HOXC9!0.79!5.24!HOXC9;;chr1:24645921..24645973,+!p2@GRHL3!0.78!5.08!GRHL3;;chrY:21906594..21906622,-!p1@KDM5D!0.78!5.08!KDM5D;;chr11:34642656..34642667,+!p2@EHF!0.77!4.85!EHF;;chr12:54378923..54378966,+!p1@HOXC10!0.77!4.85!HOXC10;;chr5:72744594..72744609,-!p1@FOXD1!0.76!23.72!FOXD1;;chr10:102505493..102505546,+!p2@PAX2!0.76!4.70!PAX2;;chr17:70117153..70117174,+!p1@SOX9!0.75!53.22!SOX9;;chr12:96588219..96588263,+!p2@ELK3!0.75!36.51!ELK3;;chr11:65667884..65667895,-!p2@FOSL1!0.75!19.72!FOSL1;;chr6:1312325..1312340,+!p1@FOXQ1!0.75!7.93!FOXQ1;;chr16:86600870..86600921,+!p2@FOXC2!0.75!4.62!FOXC2;;chr20:6748325..6748352,+!p1@BMP2!0.74!6.85!BMP2;;chr6:10412576..10412599,-!p5@TFAP2A!0.74!4.54!TFAP2A;;chr12:66358080..66358094,+!p15@HMGA2!0.74!4.47!HMGA2;;chr13:73633131..73633149,+!p1@KLF5!0.73!52.29!KLF5;;chr10:119303078..119303169,+!p2@EMX2!0.73!4.39!EMX2;;chr12:66218469..66218477,+!p16@HMGA2!0.73!4.31!HMGA2;;chr19:53496806..53496848,-!p2@ZNF702P!0.71!6.47!ZNF702P;;chr5:2751762..2751784,-!p1@IRX2!0.71!4.16!IRX2;;chr17:46703942..46703964,-!p4@HOXB9!0.71!4.08!HOXB9;;chr3:5021268..5021282,+!p4@BHLHE40!0.70!8.78!BHLHE40;;chr21:38071430..38071456,+!p1@SIM2!0.70!4.00!SIM2;;chr6:21597765..21597779,+!p2@SOX4!0.69!36.27!SOX4;;chr3:141043020..141043049,+!p17@ZBTB38!0.69!3.93!ZBTB38;;chr7:28448965..28448994,+!p2@CREB5!0.68!15.02!CREB5;;chr7:27213893..27213954,-!p1@HOXA10!0.68!3.77!HOXA10;;chr12:80084303..80084332,-!p1@PAWR!0.67!25.03!PAWR;;chr5:72744445..72744466,-!p2@FOXD1!0.67!6.62!FOXD1;;chr11:32457075..32457095,-!p1@WT1!0.67!3.70!WT1;;chr12:80084737..80084763,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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg38.nobarcode.ctss.bed.gz
|id=FF:11596-120H3
|id=FF:11596-120H3
|is_a=EFO:0002091;;FF:0000152
|is_a=EFO:0002091;;FF:0000152
|is_obsolete=
|is_obsolete=
|library_id=CNhs12728
|library_id_phase_based=2:CNhs12728
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11596
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11596
|name=Renal Cortical Epithelial Cells, donor2
|name=Renal Cortical Epithelial Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12728,LSID960,release012,COMPLETED
|profile_hcage=CNhs12728,LSID960,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 84: Line 100:
|top_motifs=ZEB1:1.72733161405;XCPE1{core}:1.68164436424;TBX4,5:1.51408483205;SNAI1..3:1.49714988834;MYOD1:1.49363176879;VSX1,2:1.3600089248;SP1:1.31253614576;TEF:1.22545702286;ADNP_IRX_SIX_ZHX:1.1979504823;GZF1:1.14755559892;NKX2-3_NKX2-5:1.13178707139;PAX8:1.12459437935;HNF1A:1.05742751465;RXRA_VDR{dimer}:1.05230182476;LMO2:0.949217710351;ALX1:0.920183432967;ONECUT1,2:0.889642023849;FOXQ1:0.859789620587;ESRRA:0.816960938819;ZNF148:0.808874650369;ARID5B:0.75824673182;ZIC1..3:0.748331629458;TEAD1:0.674615135833;STAT5{A,B}:0.648171408839;EBF1:0.639185298338;FOSL2:0.629634111515;SOX2:0.62760663285;NKX2-1,4:0.613304749964;PBX1:0.57623236547;JUN:0.573068010168;NR3C1:0.54202419574;GFI1:0.510549219631;LHX3,4:0.500946977687;POU1F1:0.498138904344;TFCP2:0.488301650543;GFI1B:0.488298808539;EN1,2:0.480483077387;NFY{A,B,C}:0.477627271446;HOX{A5,B5}:0.419289561622;T:0.417829401307;AIRE:0.394359769456;MAZ:0.391392921044;PAX5:0.391095665311;KLF4:0.390443242233;TP53:0.383751768695;POU2F1..3:0.369338173269;NKX3-1:0.352558032919;SPZ1:0.34125663884;CDC5L:0.339163385892;NR1H4:0.328542986857;TBP:0.324301757226;HAND1,2:0.292868142734;CRX:0.290304326792;PDX1:0.284599135777;E2F1..5:0.283722202637;TFAP2{A,C}:0.258592234585;EVI1:0.256452386565;FOS_FOS{B,L1}_JUN{B,D}:0.245714043804;LEF1_TCF7_TCF7L1,2:0.220776430189;SOX17:0.196675579487;TFDP1:0.194990236872;NKX6-1,2:0.192157598729;BACH2:0.179655540525;ZFP161:0.178845899946;RREB1:0.172108567089;ZNF423:0.150560978361;IKZF1:0.147567290674;UFEwm:0.138068011544;ZNF143:0.127869420675;GCM1,2:0.116094113495;ATF2:0.106956812103;NFE2L2:0.0828654988143;PPARG:0.0774037058263;ZBTB6:0.0672692055777;MTF1:0.05838872177;HNF4A_NR2F1,2:0.0424487662487;ALX4:0.0417453377209;NKX3-2:0.024515552145;SRF:0.0238926433137;NFE2:0.0213322843881;HSF1,2:0.0186187311903;TFAP4:0.0165432291322;SREBF1,2:-0.00989995098564;GTF2I:-0.00995935636836;NRF1:-0.0112793296913;GLI1..3:-0.0187418743355;NFATC1..3:-0.0299393243645;bHLH_family:-0.0340738589491;NFKB1_REL_RELA:-0.0402470191694;HIC1:-0.0427481403304;TFAP2B:-0.0502342193772;POU3F1..4:-0.0548107105346;FOXN1:-0.0590346084301;FOX{I1,J2}:-0.0845861021524;EP300:-0.0970350515211;STAT1,3:-0.103926217492;CDX1,2,4:-0.120238205371;MYBL2:-0.132731796177;NFE2L1:-0.135747143485;TAL1_TCF{3,4,12}:-0.140903641896;RFX1:-0.14639587878;POU5F1:-0.154433898788;ELK1,4_GABP{A,B1}:-0.164918607161;RFX2..5_RFXANK_RFXAP:-0.165227226178;FOXO1,3,4:-0.165286929749;TOPORS:-0.167017600839;PRDM1:-0.170004643629;FOX{F1,F2,J1}:-0.174807844699;MTE{core}:-0.175145309359;MYB:-0.175517365066;MEF2{A,B,C,D}:-0.187500772166;RORA:-0.188892241127;GTF2A1,2:-0.190363601868;TLX1..3_NFIC{dimer}:-0.191795784852;ATF4:-0.233066695248;PRRX1,2:-0.236603525;MED-1{core}:-0.237452634175;SOX{8,9,10}:-0.237617978079;REST:-0.243337074793;PATZ1:-0.262838952625;ZNF384:-0.264388105575;NR6A1:-0.264518043653;ETS1,2:-0.275531378123;HLF:-0.279545569081;OCT4_SOX2{dimer}:-0.290035443469;HIF1A:-0.295146413518;PAX1,9:-0.303667964596;EGR1..3:-0.307782513605;PAX6:-0.316589467697;HMGA1,2:-0.320340003138;CUX2:-0.324248150887;CEBPA,B_DDIT3:-0.337233101167;ELF1,2,4:-0.351364895682;ESR1:-0.359991827456;HBP1_HMGB_SSRP1_UBTF:-0.361297923664;IRF7:-0.36148266336;STAT2,4,6:-0.363484715275;ZBTB16:-0.366678862475;FOXD3:-0.381129473211;FOXM1:-0.382776250844;PAX2:-0.384176547328;FOXL1:-0.389822715131;SPI1:-0.400517635461;RXR{A,B,G}:-0.404860820758;IKZF2:-0.416798815659;HOX{A4,D4}:-0.421916259122;AR:-0.42938025075;NKX2-2,8:-0.431089526723;MZF1:-0.433846344895;XBP1:-0.454898403103;ATF6:-0.4638870147;NHLH1,2:-0.478281695876;CREB1:-0.485731658957;MYFfamily:-0.489805836755;RUNX1..3:-0.495506715565;AHR_ARNT_ARNT2:-0.496898503043;PITX1..3:-0.507168997597;NR5A1,2:-0.5268139756;SPIB:-0.5377850112;NANOG:-0.53859822332;FOXP1:-0.555370772121;NFIX:-0.570101826112;BPTF:-0.570505046357;GATA6:-0.574409253099;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.592976325021;YY1:-0.599845283592;HMX1:-0.600249671026;ATF5_CREB3:-0.605287404936;SOX5:-0.637819641386;SMAD1..7,9:-0.643345414528;RBPJ:-0.643841955022;FOXP3:-0.645819545785;HOXA9_MEIS1:-0.6672490486;IRF1,2:-0.667842627106;DBP:-0.721981110803;PAX4:-0.782460487657;MAFB:-0.786017454122;NFIL3:-0.790339335155;HES1:-0.80795333243;FOX{D1,D2}:-0.819315085625;PAX3,7:-0.821955766123;HOX{A6,A7,B6,B7}:-0.852991176336;GATA4:-0.853275986292;TGIF1:-0.85483297336;BREu{core}:-0.898465282864;ZNF238:-0.905676348888;TLX2:-0.930057185282;FOXA2:-0.958059635821;POU6F1:-1.00879524448;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01768472917;DMAP1_NCOR{1,2}_SMARC:-1.06922972923;NANOG{mouse}:-1.08789491726
|top_motifs=ZEB1:1.72733161405;XCPE1{core}:1.68164436424;TBX4,5:1.51408483205;SNAI1..3:1.49714988834;MYOD1:1.49363176879;VSX1,2:1.3600089248;SP1:1.31253614576;TEF:1.22545702286;ADNP_IRX_SIX_ZHX:1.1979504823;GZF1:1.14755559892;NKX2-3_NKX2-5:1.13178707139;PAX8:1.12459437935;HNF1A:1.05742751465;RXRA_VDR{dimer}:1.05230182476;LMO2:0.949217710351;ALX1:0.920183432967;ONECUT1,2:0.889642023849;FOXQ1:0.859789620587;ESRRA:0.816960938819;ZNF148:0.808874650369;ARID5B:0.75824673182;ZIC1..3:0.748331629458;TEAD1:0.674615135833;STAT5{A,B}:0.648171408839;EBF1:0.639185298338;FOSL2:0.629634111515;SOX2:0.62760663285;NKX2-1,4:0.613304749964;PBX1:0.57623236547;JUN:0.573068010168;NR3C1:0.54202419574;GFI1:0.510549219631;LHX3,4:0.500946977687;POU1F1:0.498138904344;TFCP2:0.488301650543;GFI1B:0.488298808539;EN1,2:0.480483077387;NFY{A,B,C}:0.477627271446;HOX{A5,B5}:0.419289561622;T:0.417829401307;AIRE:0.394359769456;MAZ:0.391392921044;PAX5:0.391095665311;KLF4:0.390443242233;TP53:0.383751768695;POU2F1..3:0.369338173269;NKX3-1:0.352558032919;SPZ1:0.34125663884;CDC5L:0.339163385892;NR1H4:0.328542986857;TBP:0.324301757226;HAND1,2:0.292868142734;CRX:0.290304326792;PDX1:0.284599135777;E2F1..5:0.283722202637;TFAP2{A,C}:0.258592234585;EVI1:0.256452386565;FOS_FOS{B,L1}_JUN{B,D}:0.245714043804;LEF1_TCF7_TCF7L1,2:0.220776430189;SOX17:0.196675579487;TFDP1:0.194990236872;NKX6-1,2:0.192157598729;BACH2:0.179655540525;ZFP161:0.178845899946;RREB1:0.172108567089;ZNF423:0.150560978361;IKZF1:0.147567290674;UFEwm:0.138068011544;ZNF143:0.127869420675;GCM1,2:0.116094113495;ATF2:0.106956812103;NFE2L2:0.0828654988143;PPARG:0.0774037058263;ZBTB6:0.0672692055777;MTF1:0.05838872177;HNF4A_NR2F1,2:0.0424487662487;ALX4:0.0417453377209;NKX3-2:0.024515552145;SRF:0.0238926433137;NFE2:0.0213322843881;HSF1,2:0.0186187311903;TFAP4:0.0165432291322;SREBF1,2:-0.00989995098564;GTF2I:-0.00995935636836;NRF1:-0.0112793296913;GLI1..3:-0.0187418743355;NFATC1..3:-0.0299393243645;bHLH_family:-0.0340738589491;NFKB1_REL_RELA:-0.0402470191694;HIC1:-0.0427481403304;TFAP2B:-0.0502342193772;POU3F1..4:-0.0548107105346;FOXN1:-0.0590346084301;FOX{I1,J2}:-0.0845861021524;EP300:-0.0970350515211;STAT1,3:-0.103926217492;CDX1,2,4:-0.120238205371;MYBL2:-0.132731796177;NFE2L1:-0.135747143485;TAL1_TCF{3,4,12}:-0.140903641896;RFX1:-0.14639587878;POU5F1:-0.154433898788;ELK1,4_GABP{A,B1}:-0.164918607161;RFX2..5_RFXANK_RFXAP:-0.165227226178;FOXO1,3,4:-0.165286929749;TOPORS:-0.167017600839;PRDM1:-0.170004643629;FOX{F1,F2,J1}:-0.174807844699;MTE{core}:-0.175145309359;MYB:-0.175517365066;MEF2{A,B,C,D}:-0.187500772166;RORA:-0.188892241127;GTF2A1,2:-0.190363601868;TLX1..3_NFIC{dimer}:-0.191795784852;ATF4:-0.233066695248;PRRX1,2:-0.236603525;MED-1{core}:-0.237452634175;SOX{8,9,10}:-0.237617978079;REST:-0.243337074793;PATZ1:-0.262838952625;ZNF384:-0.264388105575;NR6A1:-0.264518043653;ETS1,2:-0.275531378123;HLF:-0.279545569081;OCT4_SOX2{dimer}:-0.290035443469;HIF1A:-0.295146413518;PAX1,9:-0.303667964596;EGR1..3:-0.307782513605;PAX6:-0.316589467697;HMGA1,2:-0.320340003138;CUX2:-0.324248150887;CEBPA,B_DDIT3:-0.337233101167;ELF1,2,4:-0.351364895682;ESR1:-0.359991827456;HBP1_HMGB_SSRP1_UBTF:-0.361297923664;IRF7:-0.36148266336;STAT2,4,6:-0.363484715275;ZBTB16:-0.366678862475;FOXD3:-0.381129473211;FOXM1:-0.382776250844;PAX2:-0.384176547328;FOXL1:-0.389822715131;SPI1:-0.400517635461;RXR{A,B,G}:-0.404860820758;IKZF2:-0.416798815659;HOX{A4,D4}:-0.421916259122;AR:-0.42938025075;NKX2-2,8:-0.431089526723;MZF1:-0.433846344895;XBP1:-0.454898403103;ATF6:-0.4638870147;NHLH1,2:-0.478281695876;CREB1:-0.485731658957;MYFfamily:-0.489805836755;RUNX1..3:-0.495506715565;AHR_ARNT_ARNT2:-0.496898503043;PITX1..3:-0.507168997597;NR5A1,2:-0.5268139756;SPIB:-0.5377850112;NANOG:-0.53859822332;FOXP1:-0.555370772121;NFIX:-0.570101826112;BPTF:-0.570505046357;GATA6:-0.574409253099;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.592976325021;YY1:-0.599845283592;HMX1:-0.600249671026;ATF5_CREB3:-0.605287404936;SOX5:-0.637819641386;SMAD1..7,9:-0.643345414528;RBPJ:-0.643841955022;FOXP3:-0.645819545785;HOXA9_MEIS1:-0.6672490486;IRF1,2:-0.667842627106;DBP:-0.721981110803;PAX4:-0.782460487657;MAFB:-0.786017454122;NFIL3:-0.790339335155;HES1:-0.80795333243;FOX{D1,D2}:-0.819315085625;PAX3,7:-0.821955766123;HOX{A6,A7,B6,B7}:-0.852991176336;GATA4:-0.853275986292;TGIF1:-0.85483297336;BREu{core}:-0.898465282864;ZNF238:-0.905676348888;TLX2:-0.930057185282;FOXA2:-0.958059635821;POU6F1:-1.00879524448;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01768472917;DMAP1_NCOR{1,2}_SMARC:-1.06922972923;NANOG{mouse}:-1.08789491726
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11596-120H3;search_select_hide=table117:FF:11596-120H3
}}
}}

Latest revision as of 18:11, 4 June 2020

Name:Renal Cortical Epithelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12728
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexNA
ageNA
cell typeepithelial cell of kidney, renal cortex
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2264
catalog numberSC4115
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005565
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12728 CAGE DRX008426 DRR009298
Accession ID Hg19

Library idBAMCTSS
CNhs12728 DRZ000723 DRZ002108
Accession ID Hg38

Library idBAMCTSS
CNhs12728 DRZ012073 DRZ013458
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.147
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.264
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0622
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0232
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.125
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.279
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.167
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.172
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.378
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0297
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0326
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.187
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.2
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.113
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0622
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.187
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.117
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12728

Jaspar motifP-value
MA0002.20.0576
MA0003.10.805
MA0004.10.106
MA0006.10.0228
MA0007.10.473
MA0009.10.0887
MA0014.10.157
MA0017.10.491
MA0018.20.978
MA0019.10.256
MA0024.10.0203
MA0025.10.915
MA0027.10.455
MA0028.10.918
MA0029.10.834
MA0030.10.947
MA0031.10.125
MA0035.20.924
MA0038.10.00291
MA0039.20.00363
MA0040.10.801
MA0041.10.607
MA0042.10.52
MA0043.10.525
MA0046.13.44311e-19
MA0047.20.293
MA0048.10.278
MA0050.15.75334e-6
MA0051.10.0136
MA0052.10.688
MA0055.10.208
MA0057.10.255
MA0058.10.0508
MA0059.10.156
MA0060.11.06645e-5
MA0061.10.562
MA0062.20.0225
MA0065.20.687
MA0066.10.714
MA0067.10.0973
MA0068.10.592
MA0069.10.34
MA0070.10.131
MA0071.10.651
MA0072.10.766
MA0073.10.914
MA0074.10.949
MA0076.10.154
MA0077.10.0606
MA0078.10.832
MA0079.20.604
MA0080.24.40449e-6
MA0081.10.01
MA0083.10.739
MA0084.10.156
MA0087.10.806
MA0088.10.578
MA0090.11.4704e-4
MA0091.10.00614
MA0092.10.341
MA0093.10.153
MA0099.28.43974e-5
MA0100.10.605
MA0101.10.94
MA0102.20.0449
MA0103.11.10088e-7
MA0104.20.0293
MA0105.10.121
MA0106.10.0594
MA0107.11
MA0108.20.00755
MA0111.10.333
MA0112.20.53
MA0113.10.231
MA0114.10.882
MA0115.10.652
MA0116.10.0955
MA0117.10.281
MA0119.10.0929
MA0122.10.446
MA0124.10.259
MA0125.10.0475
MA0131.10.527
MA0135.10.556
MA0136.10.00113
MA0137.20.71
MA0138.20.134
MA0139.10.752
MA0140.10.428
MA0141.10.24
MA0142.10.709
MA0143.10.696
MA0144.10.629
MA0145.10.0544
MA0146.10.946
MA0147.10.047
MA0148.10.433
MA0149.10.183
MA0150.10.374
MA0152.10.558
MA0153.11.44742e-14
MA0154.10.365
MA0155.10.826
MA0156.10.0166
MA0157.10.148
MA0159.10.425
MA0160.10.175
MA0162.10.228
MA0163.10.0237
MA0164.10.719
MA0258.10.066
MA0259.10.44



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12728

Novel motifP-value
10.203
100.0375
1000.969
1010.0971
1020.318
1030.994
1040.986
1050.558
1060.654
1070.155
1080.503
1090.615
110.399
1100.376
1110.529
1120.419
1130.882
1140.00547
1150.389
1160.262
1170.0752
1180.991
1190.857
120.314
1200.104
1210.803
1220.273
1230.00446
1240.0322
1250.689
1260.361
1270.413
1280.66
1290.0646
130.884
1300.395
1310.136
1320.238
1330.148
1340.211
1350.0746
1360.0982
1370.076
1380.174
1390.00109
140.674
1400.252
1410.687
1420.214
1430.138
1440.274
1450.55
1460.346
1470.574
1480.0189
1490.739
150.626
1500.992
1510.847
1520.036
1530.864
1540.315
1550.326
1560.453
1570.898
1580.519
1590.989
160.743
1600.958
1610.904
1620.544
1630.137
1640.472
1650.538
1660.748
1670.359
1680.622
1690.867
170.864
180.448
190.247
20.754
200.837
210.773
220.889
230.57
240.39
250.707
260.34
270.583
280.903
290.898
30.198
300.0259
310.962
320.0128
330.0971
340.793
358.12367e-4
360.477
370.949
380.836
390.308
40.983
400.0777
410.133
420.29
430.213
440.244
450.226
460.348
470.583
480.587
490.0217
50.108
500.269
510.937
520.615
530.181
540.792
550.0617
560.295
570.544
580.229
590.915
60.253
600.774
610.284
620.0639
630.642
640.45
650.932
660.0891
670.695
680.0287
690.298
70.564
700.0381
710.0611
720.833
730.125
740.078
750.476
760.0868
770.0575
780.307
790.323
80.349
800.151
810.0247
820.0711
830.0193
840.761
850.0535
860.24
870.167
880.878
890.38
90.496
900.83
910.339
920.555
930.326
940.173
950.0245
960.43
970.888
980.0363
990.00796



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12728


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000152 (human renal cortical epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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