FFCP PHASE1:Mm9::chr17:56279812..56279831,-: Difference between revisions
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{{FFCP|EntrezGene=20359|HGNC=|MCL_coexpression_id=13|UniProt=O54951,Q3UTK5|association_with_transcript=-46bp_to_ENSMUST00000001256,NM_001130456,uc008dbe.1_5end|description=CAGE_peak_4_at_Sema6b_5end|id=chr17:56279812..56279831,-|ontology_enrichment_celltype=CL:0000117!1.10e-17!23;CL:0000337!1.10e-17!23;CL:0000221!9.00e-12!44;CL:0000133!9.00e-12!44;CL:0000540!1.40e-11!33;CL:0000047!1.40e-11!33;CL:0000031!1.40e-11!33;CL:0000404!1.40e-11!33;CL:0002319!2.30e-11!43;CL:0000393!4.35e-09!39;CL:0000211!4.35e-09!39;CL:0000055!7.46e-09!50|ontology_enrichment_celltype_v019_2=CL:0000117,8.96e-37,23;CL:0000337,8.96e-37,23;CL:0000540,1.49e-25,33;CL:0000047,1.49e-25,33;CL:0000031,1.49e-25,33;CL:0000404,1.49e-25,33;CL:0000393,1.50e-20,39;CL:0000211,1.50e-20,39;CL:0002319,1.53e-19,43;CL:0000221,6.15e-19,44;CL:0000133,6.15e-19,44;CL:0002321,2.24e-09,70;CL:0002609,9.59e-09,6;CL:0002614,9.38e-07,3;CL:0002610,9.78e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.30e-28!73;UBERON:0005743!3.30e-28!73;UBERON:0000073!3.61e-28!75;UBERON:0001016!3.61e-28!75;UBERON:0001049!1.82e-27!52;UBERON:0005068!1.82e-27!52;UBERON:0006241!1.82e-27!52;UBERON:0007135!1.82e-27!52;UBERON:0000955!6.03e-26!50;UBERON:0006238!6.03e-26!50;UBERON:0002616!2.42e-25!49;UBERON:0002020!3.01e-24!34;UBERON:0000033!1.04e-23!63;UBERON:0002346!1.50e-22!71;UBERON:0003075!1.50e-22!71;UBERON:0007284!1.50e-22!71;UBERON:0003080!2.39e-22!40;UBERON:0004121!8.86e-22!102;UBERON:0000924!8.86e-22!102;UBERON:0006601!8.86e-22!102;UBERON:0002780!1.13e-21!39;UBERON:0001890!1.13e-21!39;UBERON:0006240!1.13e-21!39;UBERON:0003056!1.86e-20!49;UBERON:0002791!2.73e-20!29;UBERON:0003528!2.73e-20!29;UBERON:0001893!2.73e-20!29;UBERON:0007811!1.57e-14!86;UBERON:0000956!2.72e-14!21;UBERON:0001869!2.72e-14!21;UBERON:0000203!2.72e-14!21;UBERON:0000153!1.47e-13!94;UBERON:0002619!4.96e-12!17;UBERON:0002021!3.21e-08!10;UBERON:0000411!3.21e-08!10;UBERON:0001950!3.21e-08!10;UBERON:0002420!3.44e-07!8;UBERON:0007245!3.44e-07!8;UBERON:0010009!3.44e-07!8;UBERON:0010011!3.44e-07!8;UBERON:0000454!3.44e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.42e-48,54;UBERON:0001017,3.15e-47,73;UBERON:0002020,8.95e-46,34;UBERON:0001016,1.18e-45,75;UBERON:0001049,4.62e-44,52;UBERON:0005068,4.62e-44,52;UBERON:0006241,4.62e-44,52;UBERON:0007135,4.62e-44,52;UBERON:0003528,3.14e-37,29;UBERON:0002791,3.14e-37,29;UBERON:0001893,3.14e-37,29;UBERON:0000955,8.77e-36,47;UBERON:0006238,8.77e-36,47;UBERON:0002616,1.42e-34,46;UBERON:0002346,8.15e-34,64;UBERON:0003075,8.15e-34,64;UBERON:0007284,8.15e-34,64;UBERON:0004121,1.48e-33,95;UBERON:0000924,1.48e-33,95;UBERON:0006601,1.48e-33,95;UBERON:0003080,1.40e-31,40;UBERON:0002780,3.18e-30,39;UBERON:0001890,3.18e-30,39;UBERON:0006240,3.18e-30,39;UBERON:0010371,6.64e-30,73;UBERON:0000956,2.31e-24,21;UBERON:0001869,2.31e-24,21;UBERON:0000203,2.31e-24,21;UBERON:0003056,3.13e-24,49;UBERON:0010314,1.59e-21,92;UBERON:0002619,1.87e-19,17;UBERON:0002021,4.51e-16,10;UBERON:0000411,4.51e-16,10;UBERON:0001950,4.51e-16,10;UBERON:0000025,2.09e-14,114;UBERON:0002420,7.76e-14,8;UBERON:0007245,7.76e-14,8;UBERON:0010009,7.76e-14,8;UBERON:0010011,7.76e-14,8;UBERON:0000454,7.76e-14,8;UBERON:0004111,1.20e-13,122;UBERON:0003076,3.28e-12,12;UBERON:0003057,3.28e-12,12;UBERON:0002240,1.30e-10,6;UBERON:0005174,1.30e-10,6;UBERON:0001137,1.30e-10,6;UBERON:0011216,2.35e-10,194;UBERON:0001948,2.07e-09,5;UBERON:0002315,2.07e-09,5;UBERON:0000369,1.09e-08,5;UBERON:0002435,1.09e-08,5;UBERON:0000204,1.09e-08,5;UBERON:0010082,1.09e-08,5;UBERON:0002950,5.00e-08,4;UBERON:0001891,5.00e-08,4;UBERON:0009616,5.00e-08,4;UBERON:0010286,5.00e-08,4;UBERON:0002038,9.38e-07,3;UBERON:0009663,9.38e-07,3;UBERON:0009661,9.38e-07,3;UBERON:0000125,9.38e-07,3;UBERON:0002308,9.38e-07,3;UBERON:0004684,9.78e-07,3;UBERON:0002275,9.78e-07,3|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,1.10556277196391,0.0992909512008853,0,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0.183546752161682,0,0,0.878744730937887,0.972149495371417,0.419959264876088,0,0,0,0,0,0,0,7.08107613008592,6.87688273053643,11.4089652631112,0,0.889294796111139,0,0,0,0.299600110518405,1.15265491596466,2.69592992002042,1.75507719831198,1.47227472945967,6.28432165688368,9.49734726091938,2.57230678351403,2.01275489138296,7.35375029288017,9.91042928994498,8.81042632787795,7.21950706304344,5.93488294785872,5.76372154695181,4.68822033501084,7.2587579740359,10.6924895906019,8.25110537994775,7.07108605136802,6.97621235915604,6.33758115806022,0.151452386666368,0.151143120213571,0.579728977403356,0,0,0,0,0,0.280888840263504,0,0,0,0.845060518660083,0,0,0,0,0,0,0,0.258937883647172,0,0,0.304465478312141,0,0.301445281105245,0.117588707135705,0.125666591329675,0,0,0,0.323533699894818,0,0,0,1.46390398505774,3.56059401582874,0,0,0,0,4.19413790333504,2.74500361691176,7.53926112677186,5.38855392596057,6.39288643325826,5.194701113989,4.05603157669394,0,0.124406970610093,0,0,0.130120442962704,0,0,0.30140963567143,0.272145996605311,0.768682321709099,0.374806898238915,0.258703370739016,0,0.189106080167819,0.175951124163949,0.43839146485515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,2.94405927989778,4.32199371992995,0,0,0,0.232236671860439,0,0,0,0,0,0.164698954724011,0,0,0.19496408711912,0,0,0,0,0,0,0.203651327845314,0,0,0.0632365371242573,0,0,0.246794327843601,0,0.166845105716094,0,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.568474235311454,0.162964976442026,0.169745085775188,0.234690248288502,0,0,0,0,0,0,0,0.172684981865896,0.144649058581512,0,0,0,0,2.56880943980467,2.22702204525186,0,0.252470927204373,0,0.390438744296638,0,0,0.222798674082394,0,0,0,0,1.92792789853084,0,0.178065603667255,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0.680879211507576,0.18006109403131,0,0.857348140126369,0.354680467284547,0.178368817602071,0.329098041204242,0.608929898229199,0.23467170806371,0.21183207086382,0,0,0.161464426695906,0.0603129249281559,0,0,0,3.33765543618917,0,0,0.370389054739423,0,0,0,0,0,0,0,0.316335993581135,0,0.108005340821801,0,0,0,0.0826534557253359,0,0,0,0,0,0,0.194451188344048,0.258319646955462,0,0,0.13020438484395,0.314578033277133,0,0,0,0,0.205421914329655,0.129920822977795,0.179026695667481,0,0,0,0.201932899896295,0.15241361331,0.100826185136841,0.0974578807397524,0,0,0,0,0.0897138566094757,0.335769232728157,0,0,0,0,0,6.7770221114048,7.36520378411483,4.58316410751517,7.73339320546594,4.11049511862385,2.2661816921691,7.42524750254986,4.5032120322422,6.34399372577886,4.65984280576638,0.207574695168353,0.399024873401031,0.512200817262403,0.486213434136588,0.419226325255965,0.735374033800057,0.44449345560323,0.412070114477788,0.962757628775446,0.252697211763798,0.50695859978048,0.943131706930381,0.280924522409647,0.576226371643824,0.746661096422973,1.42888107384922,0.695305955669133,0.77163688185482,0.824171801606613,0.441596760403192,0.685738504770831,0.177475806159338,0.476872379894642,0.726732083161643,0.470546902076653,0.507687647350059,0.365855945745545,0.789209134313529,0.814824683075171,0.561142271657738,0.949080144993393,1.18205378850676,0.409231043169689,1.39443157067369,0.578719832943424,3.74715866906919,0.935726433781634,1.07435527024149,0.765153328275374,0.220591419119515,0|short_description=p4@Sema6b}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20359 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=O54951,Q3UTK5 | |||
|association_with_transcript=-46bp_to_ENSMUST00000001256,NM_001130456,uc008dbe.1_5end | |||
|cluster_id=chr17:56279812..56279831,- | |||
|description=CAGE_peak_4_at_Sema6b_5end | |||
|id=chr17:56279812..56279831,- | |||
|ontology_enrichment_celltype=CL:0000117!1.10e-17!23;CL:0000337!1.10e-17!23;CL:0000221!9.00e-12!44;CL:0000133!9.00e-12!44;CL:0000540!1.40e-11!33;CL:0000047!1.40e-11!33;CL:0000031!1.40e-11!33;CL:0000404!1.40e-11!33;CL:0002319!2.30e-11!43;CL:0000393!4.35e-09!39;CL:0000211!4.35e-09!39;CL:0000055!7.46e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.96e-37,23;CL:0000337,8.96e-37,23;CL:0000540,1.49e-25,33;CL:0000047,1.49e-25,33;CL:0000031,1.49e-25,33;CL:0000404,1.49e-25,33;CL:0000393,1.50e-20,39;CL:0000211,1.50e-20,39;CL:0002319,1.53e-19,43;CL:0000221,6.15e-19,44;CL:0000133,6.15e-19,44;CL:0002321,2.24e-09,70;CL:0002609,9.59e-09,6;CL:0002614,9.38e-07,3;CL:0002610,9.78e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.30e-28!73;UBERON:0005743!3.30e-28!73;UBERON:0000073!3.61e-28!75;UBERON:0001016!3.61e-28!75;UBERON:0001049!1.82e-27!52;UBERON:0005068!1.82e-27!52;UBERON:0006241!1.82e-27!52;UBERON:0007135!1.82e-27!52;UBERON:0000955!6.03e-26!50;UBERON:0006238!6.03e-26!50;UBERON:0002616!2.42e-25!49;UBERON:0002020!3.01e-24!34;UBERON:0000033!1.04e-23!63;UBERON:0002346!1.50e-22!71;UBERON:0003075!1.50e-22!71;UBERON:0007284!1.50e-22!71;UBERON:0003080!2.39e-22!40;UBERON:0004121!8.86e-22!102;UBERON:0000924!8.86e-22!102;UBERON:0006601!8.86e-22!102;UBERON:0002780!1.13e-21!39;UBERON:0001890!1.13e-21!39;UBERON:0006240!1.13e-21!39;UBERON:0003056!1.86e-20!49;UBERON:0002791!2.73e-20!29;UBERON:0003528!2.73e-20!29;UBERON:0001893!2.73e-20!29;UBERON:0007811!1.57e-14!86;UBERON:0000956!2.72e-14!21;UBERON:0001869!2.72e-14!21;UBERON:0000203!2.72e-14!21;UBERON:0000153!1.47e-13!94;UBERON:0002619!4.96e-12!17;UBERON:0002021!3.21e-08!10;UBERON:0000411!3.21e-08!10;UBERON:0001950!3.21e-08!10;UBERON:0002420!3.44e-07!8;UBERON:0007245!3.44e-07!8;UBERON:0010009!3.44e-07!8;UBERON:0010011!3.44e-07!8;UBERON:0000454!3.44e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.42e-48,54;UBERON:0001017,3.15e-47,73;UBERON:0002020,8.95e-46,34;UBERON:0001016,1.18e-45,75;UBERON:0001049,4.62e-44,52;UBERON:0005068,4.62e-44,52;UBERON:0006241,4.62e-44,52;UBERON:0007135,4.62e-44,52;UBERON:0003528,3.14e-37,29;UBERON:0002791,3.14e-37,29;UBERON:0001893,3.14e-37,29;UBERON:0000955,8.77e-36,47;UBERON:0006238,8.77e-36,47;UBERON:0002616,1.42e-34,46;UBERON:0002346,8.15e-34,64;UBERON:0003075,8.15e-34,64;UBERON:0007284,8.15e-34,64;UBERON:0004121,1.48e-33,95;UBERON:0000924,1.48e-33,95;UBERON:0006601,1.48e-33,95;UBERON:0003080,1.40e-31,40;UBERON:0002780,3.18e-30,39;UBERON:0001890,3.18e-30,39;UBERON:0006240,3.18e-30,39;UBERON:0010371,6.64e-30,73;UBERON:0000956,2.31e-24,21;UBERON:0001869,2.31e-24,21;UBERON:0000203,2.31e-24,21;UBERON:0003056,3.13e-24,49;UBERON:0010314,1.59e-21,92;UBERON:0002619,1.87e-19,17;UBERON:0002021,4.51e-16,10;UBERON:0000411,4.51e-16,10;UBERON:0001950,4.51e-16,10;UBERON:0000025,2.09e-14,114;UBERON:0002420,7.76e-14,8;UBERON:0007245,7.76e-14,8;UBERON:0010009,7.76e-14,8;UBERON:0010011,7.76e-14,8;UBERON:0000454,7.76e-14,8;UBERON:0004111,1.20e-13,122;UBERON:0003076,3.28e-12,12;UBERON:0003057,3.28e-12,12;UBERON:0002240,1.30e-10,6;UBERON:0005174,1.30e-10,6;UBERON:0001137,1.30e-10,6;UBERON:0011216,2.35e-10,194;UBERON:0001948,2.07e-09,5;UBERON:0002315,2.07e-09,5;UBERON:0000369,1.09e-08,5;UBERON:0002435,1.09e-08,5;UBERON:0000204,1.09e-08,5;UBERON:0010082,1.09e-08,5;UBERON:0002950,5.00e-08,4;UBERON:0001891,5.00e-08,4;UBERON:0009616,5.00e-08,4;UBERON:0010286,5.00e-08,4;UBERON:0002038,9.38e-07,3;UBERON:0009663,9.38e-07,3;UBERON:0009661,9.38e-07,3;UBERON:0000125,9.38e-07,3;UBERON:0002308,9.38e-07,3;UBERON:0004684,9.78e-07,3;UBERON:0002275,9.78e-07,3 | |||
|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,1.10556277196391,0.0992909512008853,0,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0.183546752161682,0,0,0.878744730937887,0.972149495371417,0.419959264876088,0,0,0,0,0,0,0,7.08107613008592,6.87688273053643,11.4089652631112,0,0.889294796111139,0,0,0,0.299600110518405,1.15265491596466,2.69592992002042,1.75507719831198,1.47227472945967,6.28432165688368,9.49734726091938,2.57230678351403,2.01275489138296,7.35375029288017,9.91042928994498,8.81042632787795,7.21950706304344,5.93488294785872,5.76372154695181,4.68822033501084,7.2587579740359,10.6924895906019,8.25110537994775,7.07108605136802,6.97621235915604,6.33758115806022,0.151452386666368,0.151143120213571,0.579728977403356,0,0,0,0,0,0.280888840263504,0,0,0,0.845060518660083,0,0,0,0,0,0,0,0.258937883647172,0,0,0.304465478312141,0,0.301445281105245,0.117588707135705,0.125666591329675,0,0,0,0.323533699894818,0,0,0,1.46390398505774,3.56059401582874,0,0,0,0,4.19413790333504,2.74500361691176,7.53926112677186,5.38855392596057,6.39288643325826,5.194701113989,4.05603157669394,0,0.124406970610093,0,0,0.130120442962704,0,0,0.30140963567143,0.272145996605311,0.768682321709099,0.374806898238915,0.258703370739016,0,0.189106080167819,0.175951124163949,0.43839146485515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,2.94405927989778,4.32199371992995,0,0,0,0.232236671860439,0,0,0,0,0,0.164698954724011,0,0,0.19496408711912,0,0,0,0,0,0,0.203651327845314,0,0,0.0632365371242573,0,0,0.246794327843601,0,0.166845105716094,0,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.568474235311454,0.162964976442026,0.169745085775188,0.234690248288502,0,0,0,0,0,0,0,0.172684981865896,0.144649058581512,0,0,0,0,2.56880943980467,2.22702204525186,0,0.252470927204373,0,0.390438744296638,0,0,0.222798674082394,0,0,0,0,1.92792789853084,0,0.178065603667255,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0.680879211507576,0.18006109403131,0,0.857348140126369,0.354680467284547,0.178368817602071,0.329098041204242,0.608929898229199,0.23467170806371,0.21183207086382,0,0,0.161464426695906,0.0603129249281559,0,0,0,3.33765543618917,0,0,0.370389054739423,0,0,0,0,0,0,0,0.316335993581135,0,0.108005340821801,0,0,0,0.0826534557253359,0,0,0,0,0,0,0.194451188344048,0.258319646955462,0,0,0.13020438484395,0.314578033277133,0,0,0,0,0.205421914329655,0.129920822977795,0.179026695667481,0,0,0,0.201932899896295,0.15241361331,0.100826185136841,0.0974578807397524,0,0,0,0,0.0897138566094757,0.335769232728157,0,0,0,0,0,6.7770221114048,7.36520378411483,4.58316410751517,7.73339320546594,4.11049511862385,2.2661816921691,7.42524750254986,4.5032120322422,6.34399372577886,4.65984280576638,0.207574695168353,0.399024873401031,0.512200817262403,0.486213434136588,0.419226325255965,0.735374033800057,0.44449345560323,0.412070114477788,0.962757628775446,0.252697211763798,0.50695859978048,0.943131706930381,0.280924522409647,0.576226371643824,0.746661096422973,1.42888107384922,0.695305955669133,0.77163688185482,0.824171801606613,0.441596760403192,0.685738504770831,0.177475806159338,0.476872379894642,0.726732083161643,0.470546902076653,0.507687647350059,0.365855945745545,0.789209134313529,0.814824683075171,0.561142271657738,0.949080144993393,1.18205378850676,0.409231043169689,1.39443157067369,0.578719832943424,3.74715866906919,0.935726433781634,1.07435527024149,0.765153328275374,0.220591419119515,0 | |||
|short_description=p4@Sema6b | |||
}} |
Latest revision as of 16:59, 26 September 2015
Short description: | p4@Sema6b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sema6b_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -46bp_to_ENSMUST00000001256, NM_001130456, uc008dbe.1_5end |
EntrezGene: | Sema6b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.96e-37 | 23 |
neuroblast (sensu Vertebrata) | 8.96e-37 | 23 |
neuron | 1.49e-25 | 33 |
neuronal stem cell | 1.49e-25 | 33 |
neuroblast | 1.49e-25 | 33 |
electrically signaling cell | 1.49e-25 | 33 |
electrically responsive cell | 1.50e-20 | 39 |
electrically active cell | 1.50e-20 | 39 |
neural cell | 1.53e-19 | 43 |
ectodermal cell | 6.15e-19 | 44 |
neurectodermal cell | 6.15e-19 | 44 |
embryonic cell | 2.24e-09 | 70 |
neuron of cerebral cortex | 9.59e-09 | 6 |
neuron of the substantia nigra | 9.38e-07 | 3 |
raphe nuclei neuron | 9.78e-07 | 3 |