FFCP PHASE1:Mm9::chr1:173286693..173286705,+: Difference between revisions
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{{FFCP|EntrezGene=18637|HGNC=|MCL_coexpression_id=856|UniProt=|association_with_transcript=172bp_to_ENSMUST00000138323_5end|description=CAGE_peak_3_at_Pfdn2_5end|id=chr1:173286693..173286705,+|ontology_enrichment_celltype=CL:0000117!2.52e-13!23;CL:0000337!2.52e-13!23;CL:0002319!6.68e-13!43;CL:0000221!9.32e-13!44;CL:0000133!9.32e-13!44;CL:0000055!1.03e-12!50;CL:0000540!1.49e-12!33;CL:0000047!1.49e-12!33;CL:0000031!1.49e-12!33;CL:0000404!1.49e-12!33;CL:0000393!1.48e-11!39;CL:0000211!1.48e-11!39;CL:0002321!1.02e-08!70;CL:0000220!1.02e-08!70;CL:0000723!2.43e-08!91;CL:0000048!2.43e-08!91;CL:0000034!2.96e-08!97;CL:0000548!5.37e-08!115;CL:0000004!5.37e-08!115;CL:0000255!5.37e-08!115;CL:0002371!5.35e-07!118|ontology_enrichment_celltype_v019_2=CL:0000117,1.37e-29,23;CL:0000337,1.37e-29,23;CL:0002319,2.39e-26,43;CL:0000221,1.36e-25,44;CL:0000133,1.36e-25,44;CL:0000540,1.77e-23,33;CL:0000047,1.77e-23,33;CL:0000031,1.77e-23,33;CL:0000404,1.77e-23,33;CL:0000393,9.61e-23,39;CL:0000211,9.61e-23,39;CL:0002321,1.58e-20,70;CL:0000723,1.10e-17,91;CL:0000048,1.10e-17,91;CL:0000034,4.47e-16,97;CL:0002614,8.00e-08,3;CL:0002610,1.13e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.24e-17!73;UBERON:0005743!9.24e-17!73;UBERON:0000073!7.52e-16!75;UBERON:0001016!7.52e-16!75;UBERON:0002020!9.48e-13!34;UBERON:0001049!4.73e-11!52;UBERON:0005068!4.73e-11!52;UBERON:0006241!4.73e-11!52;UBERON:0007135!4.73e-11!52;UBERON:0004121!5.19e-11!102;UBERON:0000924!5.19e-11!102;UBERON:0006601!5.19e-11!102;UBERON:0000955!2.84e-10!50;UBERON:0006238!2.84e-10!50;UBERON:0002616!4.92e-10!49;UBERON:0002791!6.57e-10!29;UBERON:0003528!6.57e-10!29;UBERON:0001893!6.57e-10!29;UBERON:0002346!8.48e-10!71;UBERON:0003075!8.48e-10!71;UBERON:0007284!8.48e-10!71;UBERON:0002780!6.18e-09!39;UBERON:0001890!6.18e-09!39;UBERON:0006240!6.18e-09!39;UBERON:0003080!1.46e-08!40;UBERON:0000033!1.47e-08!63;UBERON:0003056!2.57e-07!49;UBERON:0000956!4.92e-07!21;UBERON:0001869!4.92e-07!21;UBERON:0000203!4.92e-07!21;UBERON:0000025!7.14e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.82e-23,73;UBERON:0001016,1.96e-22,75;UBERON:0002020,3.35e-22,34;UBERON:0000073,1.77e-18,54;UBERON:0003528,9.90e-17,29;UBERON:0002791,9.90e-17,29;UBERON:0001893,9.90e-17,29;UBERON:0004121,5.69e-16,95;UBERON:0000924,5.69e-16,95;UBERON:0006601,5.69e-16,95;UBERON:0001049,4.85e-14,52;UBERON:0005068,4.85e-14,52;UBERON:0006241,4.85e-14,52;UBERON:0007135,4.85e-14,52;UBERON:0002346,1.96e-11,64;UBERON:0003075,1.96e-11,64;UBERON:0007284,1.96e-11,64;UBERON:0002780,2.54e-11,39;UBERON:0001890,2.54e-11,39;UBERON:0006240,2.54e-11,39;UBERON:0003080,6.24e-11,40;UBERON:0002616,3.19e-10,46;UBERON:0000955,6.54e-10,47;UBERON:0006238,6.54e-10,47;UBERON:0002420,1.86e-09,8;UBERON:0007245,1.86e-09,8;UBERON:0010009,1.86e-09,8;UBERON:0010011,1.86e-09,8;UBERON:0000454,1.86e-09,8;UBERON:0000956,2.41e-09,21;UBERON:0001869,2.41e-09,21;UBERON:0000203,2.41e-09,21;UBERON:0010371,2.58e-09,73;UBERON:0002021,3.34e-09,10;UBERON:0000411,3.34e-09,10;UBERON:0001950,3.34e-09,10;UBERON:0003056,3.70e-08,49;UBERON:0002619,5.16e-08,17;UBERON:0000025,6.97e-08,114;UBERON:0002038,8.00e-08,3;UBERON:0009663,8.00e-08,3;UBERON:0009661,8.00e-08,3;UBERON:0000125,8.00e-08,3;UBERON:0002308,8.00e-08,3;UBERON:0010314,1.11e-07,92;UBERON:0004684,1.13e-07,3;UBERON:0002275,1.13e-07,3;UBERON:0001948,3.98e-07,5;UBERON:0002315,3.98e-07,5;UBERON:0004111,6.38e-07,122|phase1_expression=0.640595388419176,0,0,0.30246421130683,0.500895729946347,0.16787927191189,0,0.258246646883153,0.140788722151667,0.468129052643987,0.856089841127525,0.717949430958028,0.342401459862411,0.174840804837995,0,0.202475267389826,0.699561878128147,0.157731082679119,0.274228867211478,0,0.425216450755349,0.297872853602656,0,0.319984845586813,0.45881856213434,0,0,0,0.760093677825496,0.252030129759931,0.221730510655305,1.27006134691926,0.61506478758457,0,0,0,0.408338712524738,0,0,0,0,0,0,0.377690453926732,0.304130793658544,1.10128051297009,0,1.74420125104357,0.439372365468944,1.36100929351998,0.279972843250725,1.43752564364972,1.00669563634642,0.725362142011344,0.672187598284928,1.02903774414379,0,0,1.61853168687678,2.11596391708813,1.90149421051854,0.338844532069132,0,0,4.94433181283487,1.4209602298922,1.49800055259202,1.15265491596466,0.933206510776299,3.51015439662396,1.26194976810829,1.99955689082663,2.20868540951614,0.979926393719632,1.91690942036473,0,3.30347642998166,4.85211884723713,7.98753972932466,1.58263545276233,2.01272815925301,2.6045668527838,6.70039197603314,6.19038871034848,5.34793867218835,2.65165726926301,3.41692033917847,0.931997229126503,0.227178579999552,0,0,1.72084775396277,1.3599426674155,2.69851595818909,0.649776417447669,0.448026887097336,0.561777680527007,0.340860645156116,1.29893002301434,0.70667914902068,0.281686839553361,0,0,0,0.649473123033642,0.253359865475099,1.51657333504435,0.34255163915718,0,0,0.173485326766136,0.913396434936424,0.691846491768175,0.60289056221049,0.23517741427141,0.2513331826593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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18637 | |||
|HGNC= | |||
|MCL_coexpression_id=856 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=172bp_to_ENSMUST00000138323_5end | |||
|cluster_id=chr1:173286693..173286705,+ | |||
|description=CAGE_peak_3_at_Pfdn2_5end | |||
|id=chr1:173286693..173286705,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.52e-13!23;CL:0000337!2.52e-13!23;CL:0002319!6.68e-13!43;CL:0000221!9.32e-13!44;CL:0000133!9.32e-13!44;CL:0000055!1.03e-12!50;CL:0000540!1.49e-12!33;CL:0000047!1.49e-12!33;CL:0000031!1.49e-12!33;CL:0000404!1.49e-12!33;CL:0000393!1.48e-11!39;CL:0000211!1.48e-11!39;CL:0002321!1.02e-08!70;CL:0000220!1.02e-08!70;CL:0000723!2.43e-08!91;CL:0000048!2.43e-08!91;CL:0000034!2.96e-08!97;CL:0000548!5.37e-08!115;CL:0000004!5.37e-08!115;CL:0000255!5.37e-08!115;CL:0002371!5.35e-07!118 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.37e-29,23;CL:0000337,1.37e-29,23;CL:0002319,2.39e-26,43;CL:0000221,1.36e-25,44;CL:0000133,1.36e-25,44;CL:0000540,1.77e-23,33;CL:0000047,1.77e-23,33;CL:0000031,1.77e-23,33;CL:0000404,1.77e-23,33;CL:0000393,9.61e-23,39;CL:0000211,9.61e-23,39;CL:0002321,1.58e-20,70;CL:0000723,1.10e-17,91;CL:0000048,1.10e-17,91;CL:0000034,4.47e-16,97;CL:0002614,8.00e-08,3;CL:0002610,1.13e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.24e-17!73;UBERON:0005743!9.24e-17!73;UBERON:0000073!7.52e-16!75;UBERON:0001016!7.52e-16!75;UBERON:0002020!9.48e-13!34;UBERON:0001049!4.73e-11!52;UBERON:0005068!4.73e-11!52;UBERON:0006241!4.73e-11!52;UBERON:0007135!4.73e-11!52;UBERON:0004121!5.19e-11!102;UBERON:0000924!5.19e-11!102;UBERON:0006601!5.19e-11!102;UBERON:0000955!2.84e-10!50;UBERON:0006238!2.84e-10!50;UBERON:0002616!4.92e-10!49;UBERON:0002791!6.57e-10!29;UBERON:0003528!6.57e-10!29;UBERON:0001893!6.57e-10!29;UBERON:0002346!8.48e-10!71;UBERON:0003075!8.48e-10!71;UBERON:0007284!8.48e-10!71;UBERON:0002780!6.18e-09!39;UBERON:0001890!6.18e-09!39;UBERON:0006240!6.18e-09!39;UBERON:0003080!1.46e-08!40;UBERON:0000033!1.47e-08!63;UBERON:0003056!2.57e-07!49;UBERON:0000956!4.92e-07!21;UBERON:0001869!4.92e-07!21;UBERON:0000203!4.92e-07!21;UBERON:0000025!7.14e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.82e-23,73;UBERON:0001016,1.96e-22,75;UBERON:0002020,3.35e-22,34;UBERON:0000073,1.77e-18,54;UBERON:0003528,9.90e-17,29;UBERON:0002791,9.90e-17,29;UBERON:0001893,9.90e-17,29;UBERON:0004121,5.69e-16,95;UBERON:0000924,5.69e-16,95;UBERON:0006601,5.69e-16,95;UBERON:0001049,4.85e-14,52;UBERON:0005068,4.85e-14,52;UBERON:0006241,4.85e-14,52;UBERON:0007135,4.85e-14,52;UBERON:0002346,1.96e-11,64;UBERON:0003075,1.96e-11,64;UBERON:0007284,1.96e-11,64;UBERON:0002780,2.54e-11,39;UBERON:0001890,2.54e-11,39;UBERON:0006240,2.54e-11,39;UBERON:0003080,6.24e-11,40;UBERON:0002616,3.19e-10,46;UBERON:0000955,6.54e-10,47;UBERON:0006238,6.54e-10,47;UBERON:0002420,1.86e-09,8;UBERON:0007245,1.86e-09,8;UBERON:0010009,1.86e-09,8;UBERON:0010011,1.86e-09,8;UBERON:0000454,1.86e-09,8;UBERON:0000956,2.41e-09,21;UBERON:0001869,2.41e-09,21;UBERON:0000203,2.41e-09,21;UBERON:0010371,2.58e-09,73;UBERON:0002021,3.34e-09,10;UBERON:0000411,3.34e-09,10;UBERON:0001950,3.34e-09,10;UBERON:0003056,3.70e-08,49;UBERON:0002619,5.16e-08,17;UBERON:0000025,6.97e-08,114;UBERON:0002038,8.00e-08,3;UBERON:0009663,8.00e-08,3;UBERON:0009661,8.00e-08,3;UBERON:0000125,8.00e-08,3;UBERON:0002308,8.00e-08,3;UBERON:0010314,1.11e-07,92;UBERON:0004684,1.13e-07,3;UBERON:0002275,1.13e-07,3;UBERON:0001948,3.98e-07,5;UBERON:0002315,3.98e-07,5;UBERON:0004111,6.38e-07,122 | |||
|phase1_expression=0.640595388419176,0,0,0.30246421130683,0.500895729946347,0.16787927191189,0,0.258246646883153,0.140788722151667,0.468129052643987,0.856089841127525,0.717949430958028,0.342401459862411,0.174840804837995,0,0.202475267389826,0.699561878128147,0.157731082679119,0.274228867211478,0,0.425216450755349,0.297872853602656,0,0.319984845586813,0.45881856213434,0,0,0,0.760093677825496,0.252030129759931,0.221730510655305,1.27006134691926,0.61506478758457,0,0,0,0.408338712524738,0,0,0,0,0,0,0.377690453926732,0.304130793658544,1.10128051297009,0,1.74420125104357,0.439372365468944,1.36100929351998,0.279972843250725,1.43752564364972,1.00669563634642,0.725362142011344,0.672187598284928,1.02903774414379,0,0,1.61853168687678,2.11596391708813,1.90149421051854,0.338844532069132,0,0,4.94433181283487,1.4209602298922,1.49800055259202,1.15265491596466,0.933206510776299,3.51015439662396,1.26194976810829,1.99955689082663,2.20868540951614,0.979926393719632,1.91690942036473,0,3.30347642998166,4.85211884723713,7.98753972932466,1.58263545276233,2.01272815925301,2.6045668527838,6.70039197603314,6.19038871034848,5.34793867218835,2.65165726926301,3.41692033917847,0.931997229126503,0.227178579999552,0,0,1.72084775396277,1.3599426674155,2.69851595818909,0.649776417447669,0.448026887097336,0.561777680527007,0.340860645156116,1.29893002301434,0.70667914902068,0.281686839553361,0,0,0,0.649473123033642,0.253359865475099,1.51657333504435,0.34255163915718,0,0,0.173485326766136,0.913396434936424,0.691846491768175,0.60289056221049,0.23517741427141,0.251333182659351,0.247194967734374,0,0,0.323533699894818,0.220841518460394,0.484875253135222,0,0,0.628340120440365,0,0.239630249011841,0,0.127070227073065,0.149790639404823,0,0.628271760564322,0.521472960576829,0,0.83115217823824,0.162241263067758,0.203678727700633,0,0.252722758433675,0.210441855886474,0.390361328888111,0,0.180062129805349,0.150704817835715,0.408218994907967,0.2562274405697,0.468508622798644,0.258703370739016,0.215567992932842,0,0.175951124163949,0,0.834141747676794,0,0,0,0,0,0,0.414251545071004,0,0.36012412292203,0.710234206755631,0.196764231747404,1.07986979021165,0.697601834251224,0,0.350296027101508,0.16455984991348,0.164167464079095,0.162137619091711,0.292399974850665,0.439100230582101,0.671032093801859,0.210289948564127,0.205809224758569,0,0.264450566663544,0.639864751605702,0.928946687441754,0,0.403367049246685,0,0,0.474529061544512,0.164698954724011,0,0,0,0.898819408654221,0.432276099749388,0,0.379335801906163,0.913988100877831,0,0.814605311381257,0.969762435838129,0.49095073923223,0.252946148497029,0.442830443938806,0.627994911365499,0.123397163921801,0,0.166845105716094,0,0.224862112384854,0,0.241177159752417,0,0,0.162135226775035,0.549122826376163,1.43768206527355,0.744281895337007,0,0,0,0,0,0,0.325929952884052,0.339490171550376,0.704070744865506,0.335012514883631,0,0.780534591431195,0,0.664394068946325,0.318909537314974,0.983179888294428,0.518054945597687,0.289298117163023,1.50791283939272,0,0.491764273019036,0,0.321101179975584,0.937693492737625,0.327869890753351,0.252470927204373,0,1.17131623288992,0.861693590931196,0.238968797952552,0.222798674082394,0,0.809621403349789,2.04579100537918,0.790575555893047,0.642642632843614,0.141940085208269,0.35613120733451,0,0.329940245945071,0,0.242780636154981,0,0.565815239267694,0,0.307435147943927,0,0,0.712994756769443,0,0,0,0.340439605753788,0.540183282093931,0.258717367565509,0.214337035031592,0,0.535106452806212,0.493647061806363,0.304464949114599,0.23467170806371,0,0,0,0,0.120625849856312,0,0,0,0.556275906031529,0.170870880797853,0.412773735926445,0.185194527369712,0.753473828018764,0.546776910884101,0,0,0.139951452323658,0,0,0.316335993581135,0.203319467126849,0,0.209088296014469,0.655087691238533,0,0.0826534557253359,0.26175594198403,0.259229946583586,0,0.56369293868419,0.149516546043979,0.165458490457098,0.388902376688095,0.645799117388655,0.337912250981556,0.821500670520278,0.39061315453185,0.629156066554265,0.966336483304024,0.288030006257865,0.316011120628178,0,0.102710957164827,0.649604114888975,0.179026695667481,0,0.240390899039938,0,0,0.15241361331,0.302478555410522,0.292373642219257,0.0962118416403295,0.233753804363138,0.226730383615211,0.887943813496259,0.897138566094757,0.839423081820392,0.19318959403219,0.187682475451182,0.36630324853453,0,0,0.564751842617067,2.30162618253588,1.71868654031819,0.343706364687375,1.37016503954128,0.755393897389701,2.02506750069542,1.80128481289688,2.71885445390523,3.10656187051092,0.31136204275253,0,0,0.243106717068294,0,0,0,0,0.320919209591815,0.252697211763798,0.25347929989024,0.377252682772152,0.280924522409647,0.0640251524048693,0.0574354689556133,0,0.115884325944855,0.192909220463705,0,0.441596760403192,0,0,0.238436189947321,0,0.0941093804153306,0.25384382367503,0.182927972872773,0.526139422875686,0.814824683075171,0,0.355905054372522,0.197008964751127,0.409231043169689,0,0.192906610981141,0,0.467863216890817,0,0,0.220591419119515,0 | |||
|short_description=p3@Pfdn2 | |||
}} |
Latest revision as of 18:55, 26 September 2015
Short description: | p3@Pfdn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Pfdn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:856 |
Association with transcript: | 172bp_to_ENSMUST00000138323_5end |
EntrezGene: | Pfdn2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.37e-29 | 23 |
neuroblast (sensu Vertebrata) | 1.37e-29 | 23 |
neural cell | 2.39e-26 | 43 |
ectodermal cell | 1.36e-25 | 44 |
neurectodermal cell | 1.36e-25 | 44 |
neuron | 1.77e-23 | 33 |
neuronal stem cell | 1.77e-23 | 33 |
neuroblast | 1.77e-23 | 33 |
electrically signaling cell | 1.77e-23 | 33 |
electrically responsive cell | 9.61e-23 | 39 |
electrically active cell | 9.61e-23 | 39 |
embryonic cell | 1.58e-20 | 70 |
somatic stem cell | 1.10e-17 | 91 |
multi fate stem cell | 1.10e-17 | 91 |
stem cell | 4.47e-16 | 97 |
neuron of the substantia nigra | 8.00e-08 | 3 |
raphe nuclei neuron | 1.13e-07 | 3 |