FF:11590-120G6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005923 | |DRA_sample_Accession=CAGE@SAMD00005923 | ||
|accession_numbers=CAGE;DRX008105;DRR008977;DRZ000402;DRZ001787 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005923 | ||
|accession_numbers=CAGE;DRX008105;DRR008977;DRZ000402;DRZ001787;DRZ011752;DRZ013137 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036999;DRR041365;DRZ007007 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188 | ||
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|def= | |def= | ||
|expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.32!207.25!HOPX;;chr11:61520075..61520136,+!p1@C11orf9!2.14!279.12!C11orf9;;chr1:201979703..201979721,+!p2@ELF3!2.13!134.68!ELF3;;chr1:201979743..201979762,+!p1@ELF3!2.08!117.93!ELF3;;chr5:2751762..2751784,-!p1@IRX2!1.84!68.38!IRX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.70!78.15!FOXQ1;;chr20:22564895..22564910,-!p1@FOXA2!1.67!46.05!FOXA2;;chr20:22565185..22565223,-!p3@FOXA2!1.56!35.59!FOXA2;;chr6:34204921..34204939,+!p3@HMGA1!1.51!905.75!HMGA1;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.61!HIF3A;;chr18:19749386..19749404,+!p2@GATA6!1.46!39.08!GATA6;;chr20:42295745..42295765,+!p1@MYBL2!1.43!406.12!MYBL2;;chr14:38064429..38064486,-!p1@FOXA1!1.39!23.73!FOXA1;;chr19:17356189..17356221,-!p2@NR2F6!1.38!36.98!NR2F6;;chr1:209979467..209979494,-!p1@IRF6!1.38!25.82!IRF6;;chr18:19749541..19749557,+!p1@GATA6!1.36!67.69!GATA6;;chr12:7079780..7079791,-!p2@PHB2!1.27!91.41!PHB2;;chr5:2751785..2751808,-!p2@IRX2!1.25!16.75!IRX2;;chr5:3595977..3595999,+!p1@IRX1!1.25!16.75!IRX1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.23!138.86!PPP1R13L;;chr1:935467..935484,-!p1@HES4!1.23!70.48!HES4;;chr3:52001448..52001478,-!p2@PCBP4!1.21!209.34!PCBP4;;chr1:23885981..23886002,-!p1@ID3!1.19!2477.19!ID3;;chr6:34204672..34204692,+!p1@HMGA1!1.19!1595.17!HMGA1;;chr2:5832508..5832524,+!p1@SOX11!1.19!14.65!SOX11;;chr4:188916918..188916942,+!p1@ZFP42!1.17!13.96!ZFP42;;chr7:1577899..1577943,+!p3@MAFK!1.17!13.96!MAFK;;chr14:36989358..36989378,-!p3@NKX2-1!1.17!13.96!NKX2-1;;chr14:36989427..36989442,-!p1@NKX2-1!1.17!13.96!NKX2-1;;chr9:35732647..35732678,+!p2@CREB3!1.16!73.97!CREB3;;chr1:6479968..6479986,-!p1@HES2!1.15!13.26!HES2;;chr6:19837592..19837621,+!p1@ID4!1.14!77.46!ID4;;chr19:45579725..45579743,-!p1@ZNF296!1.14!57.22!ZNF296;;chr20:30193083..30193098,+!p1@ID1!1.13!994.37!ID1;;chr20:32274179..32274213,-!p1@E2F1!1.12!80.25!E2F1;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.86!GRHL2;;chr18:19749504..19749515,+!p5@GATA6!1.11!11.86!GATA6;;chr17:41623692..41623715,-!p1@ETV4!1.09!48.15!ETV4;;chr14:35872962..35873025,-!p3@NFKBIA!1.09!28.61!NFKBIA;;chr18:19749517..19749531,+!p3@GATA6!1.09!20.24!GATA6;;chr17:46675558..46675577,-!p2@HOXB6!1.09!11.16!HOXB6;;chr19:49865646..49865718,-!p1@TEAD2!1.07!92.81!TEAD2;;chr1:8926441..8926473,-!p10@ENO1!1.07!16.05!ENO1;;chr11:65686732..65686756,+!p2@DRAP1!1.06!44.66!DRAP1;;chr6:134210243..134210257,+!p1@TCF21!1.06!10.47!TCF21;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.86!BNC1;;chr16:29818160..29818188,+!p6@MAZ!1.04!46.75!MAZ;;chr20:42295713..42295738,+!p2@MYBL2!1.03!57.92!MYBL2;;chr6:44233252..44233296,-!p1@NFKBIE!1.01!92.81!NFKBIE;;chr3:52001396..52001425,-!p4@PCBP4!1.01!16.75!PCBP4;;chr17:3571863..3571881,-!p1@TAX1BP3!1.00!655.24!TAX1BP3;;chr1:26496382..26496457,+!p1@ZNF593!1.00!554.75!ZNF593;;chr3:52001426..52001447,-!p3@PCBP4!1.00!25.82!PCBP4;;chr22:19748231..19748317,+!p1@TBX1!1.00!9.07!TBX1;;chr17:36105042..36105060,-!p1@HNF1B!1.00!9.07!HNF1B;;chr11:34642612..34642646,+!p1@EHF!1.00!9.07!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.00!9.07!IRF6;;chr20:18038521..18038571,-!p1@OVOL2!1.00!9.07!OVOL2;;chr20:22565370..22565388,-!p2@FOXA2!1.00!9.07!FOXA2;;chr11:65686802..65686818,+!p6@DRAP1!0.99!15.35!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.97!23.03!HMGA2;;chr17:7493405..7493419,-!p1@SOX15!0.97!8.37!SOX15;;chr16:8962853..8962878,-!p1@CARHSP1!0.96!487.07!CARHSP1;;chr6:41514078..41514158,+!p1@FOXP4!0.96!76.06!FOXP4;;chr19:926055..926068,+!p2@ARID3A!0.93!16.75!ARID3A;;chr19:17356436..17356481,-!p3@NR2F6!0.93!13.26!NR2F6;;chr2:85981222..85981259,+!p2@ATOH8!0.93!12.56!ATOH8;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.86!HMGA2;;chr1:23886132..23886156,-!p2@ID3!0.92!8.37!ID3;;chr1:8938709..8938720,-!p3@ENO1!0.91!361.46!ENO1;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.47!HMGA2;;chr1:8926369..8926385,-!p12@ENO1!0.91!9.77!ENO1;;chr17:46671108..46671147,-!p1@HOXB5!0.90!6.98!HOXB5;;chr5:3595934..3595957,+!p2@IRX1!0.90!6.98!IRX1;;chr7:97840743..97840786,+!p1@BHLHA15!0.90!6.98!BHLHA15;;chr6:41514305..41514359,+!p2@FOXP4!0.89!59.31!FOXP4;;chr19:1592714..1592762,-!p1@MBD3!0.89!53.73!MBD3;;chr10:104155480..104155534,+!p2@NFKB2!0.88!45.36!NFKB2;;chr1:8483878..8483907,-!p4@RERE!0.88!26.52!RERE;;chr12:54785074..54785122,-!p2@ZNF385A!0.88!10.47!ZNF385A;;chr19:6424783..6424802,-!p2@KHSRP!0.87!136.77!KHSRP;;chr1:26496459..26496470,+!p2@ZNF593!0.87!12.56!ZNF593;;chrX:48900782..48900793,-!p3@TFE3!0.87!12.56!TFE3;;chr17:38465413..38465438,+!p5@RARA!0.87!10.47!RARA;;chr19:56632592..56632670,-!p1@ZNF787!0.86!149.33!ZNF787;;chr19:46367576..46367592,+!p1@FOXA3!0.86!6.28!FOXA3;;chr19:46800289..46800327,+!p2@HIF3A!0.86!6.28!HIF3A;;chr14:36988882..36988895,-!p13@NKX2-1!0.86!6.28!NKX2-1;;chr8:102504690..102504704,+!p3@GRHL2!0.86!6.28!GRHL2;;chr10:135122380..135122458,+!p1@ZNF511!0.85!195.38!ZNF511;;chr14:75894714..75894733,+!p1@JDP2!0.85!183.52!JDP2;;chr16:30537839..30537929,-!p1@ZNF768!0.85!40.47!ZNF768;;chr19:926001..926046,+!p1@ARID3A!0.85!22.33!ARID3A;;chr11:47270436..47270464,+!p2@NR1H3!0.85!13.26!NR1H3;;chr12:2986206..2986258,-!p2@FOXM1!0.84!37.68!FOXM1;;chr1:8938736..8938756,-!p1@ENO1!0.83!6731.69!ENO1;;chr11:65686952..65686975,+!p5@DRAP1!0.83!34.19!DRAP1;;chr16:8962544..8962584,-!p2@CARHSP1!0.83!13.96!CARHSP1;;chr2:85980951..85981004,+!p1@ATOH8!0.83!9.77!ATOH8;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.37!IRX3;;chr9:35732514..35732530,+!p5@CREB3!0.83!8.37!CREB3;;chr19:1652555..1652568,-!p2@TCF3!0.82!24.42!TCF3;;chr12:80084737..80084763,-!p3@PAWR!0.82!22.33!PAWR;;chr1:8934931..8934947,-!p4@ENO1!0.82!19.54!ENO1;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.37!IRX5;;chr17:36105074..36105086,-!p2@HNF1B!0.82!5.58!HNF1B;;chr17:45928443..45928473,-!p2@SP6!0.82!5.58!SP6;;chr2:122042770..122042785,-!p1@TFCP2L1!0.82!5.58!TFCP2L1;;chr12:3068634..3068656,+!p5@TEAD4!0.82!5.58!TEAD4;;chr10:104154246..104154347,+!p3@NFKB2!0.81!36.29!NFKB2;;chr1:154975258..154975330,+!p1@ZBTB7B!0.81!21.63!ZBTB7B;;chr11:65667846..65667868,-!p1@FOSL1!0.80!152.82!FOSL1;;chr10:104155455..104155479,+!p1@NFKB2!0.80!85.13!NFKB2;;chr19:17356697..17356762,-!p1@NR2F6!0.80!78.15!NR2F6;;chr17:61920280..61920343,-!p2@SMARCD2!0.80!55.82!SMARCD2;;chr12:3068544..3068597,+!p1@TEAD4!0.80!34.19!TEAD4;;chr17:46622205..46622218,-!p3@HOXB2!0.80!6.28!HOXB2;;chr19:1652575..1652621,-!p1@TCF3!0.79!217.71!TCF3;;chr19:45504688..45504782,+!p1@RELB!0.79!34.19!RELB;;chr2:70314240..70314256,+!p4@PCBP1!0.79!11.16!PCBP1;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.79!9.07!ELK4;;chr12:7079807..7079848,-!p1@PHB2!0.78!979.02!PHB2;;chr11:64073022..64073056,+!p1@ESRRA!0.78!65.59!ESRRA;;chr15:74833584..74833626,+!p1@ARID3B!0.78!12.56!ARID3B;;chr6:34204642..34204664,+!p2@HMGA1!0.77!725.02!HMGA1;;chr16:29817789..29817838,+!p2@MAZ!0.77!73.27!MAZ;;chr16:86544113..86544145,+!p1@FOXF1!0.77!6.28!FOXF1;;chr10:135122868..135122893,+!p3@ZNF511!0.77!4.88!ZNF511;;chr14:36989379..36989390,-!p8@NKX2-1!0.77!4.88!NKX2-1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.77!4.88!ZSCAN1;;chr2:85981107..85981120,+!p3@ATOH8!0.77!4.88!ATOH8;;chr4:149363494..149363543,-!p1@NR3C2!0.77!4.88!NR3C2;;chr17:17740287..17740307,-!p1@SREBF1!0.76!137.47!SREBF1;;chr19:56652643..56652683,+!p1@ZNF444!0.76!28.61!ZNF444;;chr8:145669791..145669834,-!p1@TONSL!0.76!14.65!TONSL;;chr22:42229210..42229229,+!p3@SREBF2!0.76!11.86!SREBF2;;chr10:48355030..48355090,+!p1@ZNF488!0.76!6.28!ZNF488;;chr11:615942..615957,-!p1@IRF7!0.75!48.15!IRF7;;chr20:32274150..32274166,-!p2@E2F1!0.75!9.07!E2F1;;chr9:35732592..35732640,+!p1@CREB3!0.74!65.59!CREB3;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.74!50.24!GLIS2;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.35!TBX2;;chr19:3366625..3366629,+!p4@NFIC!0.74!6.98!NFIC;;chr12:125002739..125002756,-!p6@NCOR2!0.74!6.98!NCOR2;;chr14:75988771..75988826,+!p1@BATF!0.74!6.28!BATF;;chr19:19302931..19302974,-!p1@MEF2BNB-MEF2B,p1@MEF2BNB,p1@MEF2B!0.73!120.72!MEF2B;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.05!TCF19;;chr12:66218598..66218645,+!p2@HMGA2!0.73!22.33!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.73!9.07!HMGA2;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.28!TEAD2;;chr19:19303731..19303783,+!p1@RFXANK!0.72!112.35!RFXANK;;chr17:38498402..38498445,+!p3@RARA!0.72!16.75!RARA;;chr2:169312600..169312606,+!p2@CERS6!0.72!6.98!CERS6;;chr11:62369806..62369837,-!p8@MTA2!0.72!5.58!MTA2;;chr11:65687222..65687240,+!p7@DRAP1!0.72!5.58!DRAP1;;chr20:48807351..48807384,+!p1@CEBPB!0.71!484.27!CEBPB;;chr19:1863568..1863586,-!p1@KLF16!0.71!153.52!KLF16;;chr6:35464817..35464894,-!p1@TEAD3!0.71!71.87!TEAD3;;chr12:132628963..132629027,+!p1@NOC4L!0.71!67.69!NOC4L;;chr2:46524897..46524911,+!p2@EPAS1!0.71!12.56!EPAS1;;chr17:41623009..41623053,-!p4@ETV4!0.71!6.98!ETV4;;chr16:54320158..54320200,-!p5@IRX3!0.71!6.28!IRX3;;chr20:6748325..6748352,+!p1@BMP2!0.71!6.28!BMP2;;chr19:58545369..58545404,+!p2@ZSCAN1!0.71!4.19!ZSCAN1;;chr1:154975229..154975247,+!p6@ZBTB7B!0.71!4.19!ZBTB7B;;chr14:38064590..38064606,-!p2@FOXA1!0.71!4.19!FOXA1;;chr3:69915385..69915438,+!p3@MITF!0.71!4.19!MITF;;chr16:29817841..29817865,+!p1@MAZ!0.70!96.99!MAZ;;chr16:29817665..29817719,+!p3@MAZ!0.70!69.78!MAZ;;chr22:42229246..42229270,+!p2@SREBF2!0.70!57.22!SREBF2;;chr13:73633131..73633149,+!p1@KLF5!0.70!48.15!KLF5;;chr22:21356378..21356422,-!p2@THAP7!0.70!39.77!THAP7;;chr17:17740330..17740349,-!p3@SREBF1!0.70!30.01!SREBF1;;chr2:242576641..242576731,-!p2@THAP4!0.70!17.45!THAP4;;chr12:3069037..3069119,+!p2@TEAD4!0.70!15.35!TEAD4;;chr1:935398..935465,-!p2@HES4!0.70!9.07!HES4;;chrX:129244655..129244697,-!p4@ELF4!0.70!7.68!ELF4;;chr16:29818199..29818216,+!p11@MAZ!0.70!6.98!MAZ;;chr19:13213662..13213686,-!p1@LYL1!0.70!6.28!LYL1;;chr21:36260773..36260804,-!p7@RUNX1!0.70!5.58!RUNX1;;chr11:65686855..65686946,+!p1@DRAP1!0.69!338.43!DRAP1;;chr6:34204973..34204990,+!p4@HMGA1!0.69!59.31!HMGA1;;chr5:92918919..92918942,+!p1@NR2F1!0.69!19.54!NR2F1;;chr17:41623667..41623682,-!p8@ETV4!0.69!4.19!ETV4;;chr19:1863591..1863611,-!p2@KLF16!0.68!41.17!KLF16;;chr7:1570322..1570360,+!p1@MAFK!0.68!36.29!MAFK;;chr8:49833948..49833973,-!p2@SNAI2!0.68!27.21!SN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2901..46602926,+!p7@EPAS1!0.26!1.40!EPAS1;;chr3:71632811..71632825,-!p19@FOXP1!0.26!1.40!FOXP1;;chr16:31085961..31086009,+!p2@ZNF646!0.26!1.40!ZNF646;;chr17:36873780..36873800,+!p5@MLLT6!0.26!1.40!MLLT6;;chr17:59477275..59477286,+!p3@TBX2!0.26!1.40!TBX2;;chr18:3449330..3449344,+!p10@TGIF1!0.26!1.40!TGIF1;;chr5:43067636..43067674,+!p6@ZNF131!0.26!1.40!ZNF131;;chr6:157099387..157099403,+!p8@ARID1B!0.26!1.40!ARID1B;;chr6:21597283..21597312,+!p7@SOX4!0.26!1.40!SOX4;;chr20:33413523..33413534,-!p3@NCOA6!0.26!1.40!NCOA6;;chr11:65687243..65687276,+!p8@DRAP1!0.26!1.40!DRAP1;;chr11:67007611..67007622,+!p6@KDM2A!0.26!1.40!KDM2A;;chr12:133613902..133613924,+!p4@ZNF84!0.26!1.40!ZNF84;;chr3:101568349..101568365,+!p1@NFKBIZ!0.25!84.43!NFKBIZ;;chr20:44718538..44718612,-!p1@NCOA5!0.25!43.96!NCOA5;;chr19:6279932..6280000,-!p1@MLLT1!0.25!40.47!MLLT1;;chr20:50808290..50808328,-!p1@ZFP64!0.25!18.14!ZFP64;;chr16:2273645..2273671,+!p2@E4F1!0.25!7.68!E4F1;;chr7:149194843..149194922,-!p2@ZNF746!0.25!7.68!ZNF746;;chr12:96588279..96588299,+!p4@ELK3!0.25!6.98!ELK3;;chr3:44596679..44596726,+!p1@ZNF167!0.25!6.28!ZNF167;;chr12:54019757..54019804,-!p2@ATF7!0.25!5.58!ATF7;;chr18:5296001..5296045,-!p1@ZFP161!0.25!5.58!ZFP161;;chr7:150945754..150945789,-!p2@SMARCD3!0.25!4.19!SMARCD3;;chr17:1959369..1959388,+!p2@HIC1!0.25!3.49!HIC1;;chr17:61920246..61920272,-!p4@SMARCD2!0.25!2.79!SMARCD2;;chr19:57106624..57106644,+!p2@ZNF71!0.25!2.79!ZNF71;;chr20:48807091..48807123,+!p7@CEBPB!0.25!2.79!CEBPB;;chr1:40367530..40367597,-!p1@MYCL1!0.25!2.09!MYCL1;;chr16:73092791..73092831,-!p4@ZFHX3!0.25!2.09!ZFHX3;;chr12:53574398..53574412,+!p3@ZNF740!0.25!2.09!ZNF740;;chr12:10865870..10865888,-!p6@CSDA!0.25!1.40!CSDA;;chr19:50435736..50435781,+!p3@ATF5!0.25!1.40!ATF5;;chr8:86089341..86089362,+!p5@E2F5!0.25!1.40!E2F5;;chr15:85291372..85291405,+!p3@ZNF592!0.25!1.40!ZNF592;;chr17:46127997..46128015,+!p5@NFE2L1!0.25!1.40!NFE2L1;;chr22:21356345..21356367,-!p3@THAP7!0.25!1.40!THAP7;;chr3:71355163..71355209,-!p5@FOXP1!0.25!1.40!FOXP1;;chr2:220094514..220094599,+!p1@ANKZF1!0.24!45.36!ANKZF1;;chr2:28616337..28616355,+!p2@FOSL2!0.24!27.21!FOSL2;;chr1:41157266..41157314,+!p3@NFYC!0.24!12.56!NFYC;;chr11:62368696..62368759,-!p4@MTA2!0.24!9.07!MTA2;;chr19:50169013..50169062,-!p2@IRF3!0.24!8.37!IRF3;;chr19:58694421..58694485,+!p1@ZNF274!0.24!7.68!ZNF274;;chr12:48298785..48298828,-!p1@VDR!0.24!7.68!VDR;;chr2:60780753..60780800,-!p1@BCL11A!0.24!6.98!BCL11A;;chr19:11998584..11998649,+!p1@ZNF69!0.24!6.28!ZNF69;;chr1:149871114..149871134,+!p3@BOLA1!0.24!5.58!BOLA1;;chr19:58220517..58220583,-!p1@ZNF154!0.24!4.19!ZNF154;;chr3:150126706..150126754,+!p5@TSC22D2!0.24!4.19!TSC22D2;;chr3:5021191..5021202,+!p3@BHLHE40!0.24!3.49!BHLHE40;;chr7:6676986..6677005,+!p2@ENST00000427912!0.24!3.49!ZNF316;;chr8:86089369..86089408,+!p1@E2F5!0.24!3.49!E2F5;;chr9:117150254..117150271,-!p1@AKNA!0.24!3.49!AKNA;;chr19:55987998..55988026,+!p2@ZNF628!0.24!2.09!ZNF628;;chr17:42297000..42297022,-!p15@UBTF!0.24!1.40!UBTF;;chr17:42297226..42297246,-!p14@UBTF!0.24!1.40!UBTF;;chr9:99180662..99180690,-!p2@ZNF367!0.24!1.40!ZNF367;;chr7:137563905..137563916,-!p11@CREB3L2!0.24!1.40!CREB3L2;;chr8:103665947..103665981,-!p3@KLF10!0.24!1.40!KLF10;;chr4:146859887..146859921,-!p3@ZNF827!0.24!1.40!ZNF827;;chr5:149380256..149380343,+!p1@HMGXB3!0.23!45.36!HMGXB3;;chr17:79885576..79885624,-!p1@MAFG!0.23!16.75!MAFG;;chr12:96588219..96588263,+!p2@ELK3!0.23!10.47!ELK3;;chr6:41703296..41703367,-!p1@TFEB!0.23!6.98!TFEB;;chr19:46272462..46272562,-!p1@SIX5!0.23!5.58!SIX5;; | |expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.32!207.25!HOPX;;chr11:61520075..61520136,+!p1@C11orf9!2.14!279.12!C11orf9;;chr1:201979703..201979721,+!p2@ELF3!2.13!134.68!ELF3;;chr1:201979743..201979762,+!p1@ELF3!2.08!117.93!ELF3;;chr5:2751762..2751784,-!p1@IRX2!1.84!68.38!IRX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.70!78.15!FOXQ1;;chr20:22564895..22564910,-!p1@FOXA2!1.67!46.05!FOXA2;;chr20:22565185..22565223,-!p3@FOXA2!1.56!35.59!FOXA2;;chr6:34204921..34204939,+!p3@HMGA1!1.51!905.75!HMGA1;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.61!HIF3A;;chr18:19749386..19749404,+!p2@GATA6!1.46!39.08!GATA6;;chr20:42295745..42295765,+!p1@MYBL2!1.43!406.12!MYBL2;;chr14:38064429..38064486,-!p1@FOXA1!1.39!23.73!FOXA1;;chr19:17356189..17356221,-!p2@NR2F6!1.38!36.98!NR2F6;;chr1:209979467..209979494,-!p1@IRF6!1.38!25.82!IRF6;;chr18:19749541..19749557,+!p1@GATA6!1.36!67.69!GATA6;;chr12:7079780..7079791,-!p2@PHB2!1.27!91.41!PHB2;;chr5:2751785..2751808,-!p2@IRX2!1.25!16.75!IRX2;;chr5:3595977..3595999,+!p1@IRX1!1.25!16.75!IRX1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.23!138.86!PPP1R13L;;chr1:935467..935484,-!p1@HES4!1.23!70.48!HES4;;chr3:52001448..52001478,-!p2@PCBP4!1.21!209.34!PCBP4;;chr1:23885981..23886002,-!p1@ID3!1.19!2477.19!ID3;;chr6:34204672..34204692,+!p1@HMGA1!1.19!1595.17!HMGA1;;chr2:5832508..5832524,+!p1@SOX11!1.19!14.65!SOX11;;chr4:188916918..188916942,+!p1@ZFP42!1.17!13.96!ZFP42;;chr7:1577899..1577943,+!p3@MAFK!1.17!13.96!MAFK;;chr14:36989358..36989378,-!p3@NKX2-1!1.17!13.96!NKX2-1;;chr14:36989427..36989442,-!p1@NKX2-1!1.17!13.96!NKX2-1;;chr9:35732647..35732678,+!p2@CREB3!1.16!73.97!CREB3;;chr1:6479968..6479986,-!p1@HES2!1.15!13.26!HES2;;chr6:19837592..19837621,+!p1@ID4!1.14!77.46!ID4;;chr19:45579725..45579743,-!p1@ZNF296!1.14!57.22!ZNF296;;chr20:30193083..30193098,+!p1@ID1!1.13!994.37!ID1;;chr20:32274179..32274213,-!p1@E2F1!1.12!80.25!E2F1;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.86!GRHL2;;chr18:19749504..19749515,+!p5@GATA6!1.11!11.86!GATA6;;chr17:41623692..41623715,-!p1@ETV4!1.09!48.15!ETV4;;chr14:35872962..35873025,-!p3@NFKBIA!1.09!28.61!NFKBIA;;chr18:19749517..19749531,+!p3@GATA6!1.09!20.24!GATA6;;chr17:46675558..46675577,-!p2@HOXB6!1.09!11.16!HOXB6;;chr19:49865646..49865718,-!p1@TEAD2!1.07!92.81!TEAD2;;chr1:8926441..8926473,-!p10@ENO1!1.07!16.05!ENO1;;chr11:65686732..65686756,+!p2@DRAP1!1.06!44.66!DRAP1;;chr6:134210243..134210257,+!p1@TCF21!1.06!10.47!TCF21;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.86!BNC1;;chr16:29818160..29818188,+!p6@MAZ!1.04!46.75!MAZ;;chr20:42295713..42295738,+!p2@MYBL2!1.03!57.92!MYBL2;;chr6:44233252..44233296,-!p1@NFKBIE!1.01!92.81!NFKBIE;;chr3:52001396..52001425,-!p4@PCBP4!1.01!16.75!PCBP4;;chr17:3571863..3571881,-!p1@TAX1BP3!1.00!655.24!TAX1BP3;;chr1:26496382..26496457,+!p1@ZNF593!1.00!554.75!ZNF593;;chr3:52001426..52001447,-!p3@PCBP4!1.00!25.82!PCBP4;;chr22:19748231..19748317,+!p1@TBX1!1.00!9.07!TBX1;;chr17:36105042..36105060,-!p1@HNF1B!1.00!9.07!HNF1B;;chr11:34642612..34642646,+!p1@EHF!1.00!9.07!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.00!9.07!IRF6;;chr20:18038521..18038571,-!p1@OVOL2!1.00!9.07!OVOL2;;chr20:22565370..22565388,-!p2@FOXA2!1.00!9.07!FOXA2;;chr11:65686802..65686818,+!p6@DRAP1!0.99!15.35!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.97!23.03!HMGA2;;chr17:7493405..7493419,-!p1@SOX15!0.97!8.37!SOX15;;chr16:8962853..8962878,-!p1@CARHSP1!0.96!487.07!CARHSP1;;chr6:41514078..41514158,+!p1@FOXP4!0.96!76.06!FOXP4;;chr19:926055..926068,+!p2@ARID3A!0.93!16.75!ARID3A;;chr19:17356436..17356481,-!p3@NR2F6!0.93!13.26!NR2F6;;chr2:85981222..85981259,+!p2@ATOH8!0.93!12.56!ATOH8;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.86!HMGA2;;chr1:23886132..23886156,-!p2@ID3!0.92!8.37!ID3;;chr1:8938709..8938720,-!p3@ENO1!0.91!361.46!ENO1;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.47!HMGA2;;chr1:8926369..8926385,-!p12@ENO1!0.91!9.77!ENO1;;chr17:46671108..46671147,-!p1@HOXB5!0.90!6.98!HOXB5;;chr5:3595934..3595957,+!p2@IRX1!0.90!6.98!IRX1;;chr7:97840743..97840786,+!p1@BHLHA15!0.90!6.98!BHLHA15;;chr6:41514305..41514359,+!p2@FOXP4!0.89!59.31!FOXP4;;chr19:1592714..1592762,-!p1@MBD3!0.89!53.73!MBD3;;chr10:104155480..104155534,+!p2@NFKB2!0.88!45.36!NFKB2;;chr1:8483878..8483907,-!p4@RERE!0.88!26.52!RERE;;chr12:54785074..54785122,-!p2@ZNF385A!0.88!10.47!ZNF385A;;chr19:6424783..6424802,-!p2@KHSRP!0.87!136.77!KHSRP;;chr1:26496459..26496470,+!p2@ZNF593!0.87!12.56!ZNF593;;chrX:48900782..48900793,-!p3@TFE3!0.87!12.56!TFE3;;chr17:38465413..38465438,+!p5@RARA!0.87!10.47!RARA;;chr19:56632592..56632670,-!p1@ZNF787!0.86!149.33!ZNF787;;chr19:46367576..46367592,+!p1@FOXA3!0.86!6.28!FOXA3;;chr19:46800289..46800327,+!p2@HIF3A!0.86!6.28!HIF3A;;chr14:36988882..36988895,-!p13@NKX2-1!0.86!6.28!NKX2-1;;chr8:102504690..102504704,+!p3@GRHL2!0.86!6.28!GRHL2;;chr10:135122380..135122458,+!p1@ZNF511!0.85!195.38!ZNF511;;chr14:75894714..75894733,+!p1@JDP2!0.85!183.52!JDP2;;chr16:30537839..30537929,-!p1@ZNF768!0.85!40.47!ZNF768;;chr19:926001..926046,+!p1@ARID3A!0.85!22.33!ARID3A;;chr11:47270436..47270464,+!p2@NR1H3!0.85!13.26!NR1H3;;chr12:2986206..2986258,-!p2@FOXM1!0.84!37.68!FOXM1;;chr1:8938736..8938756,-!p1@ENO1!0.83!6731.69!ENO1;;chr11:65686952..65686975,+!p5@DRAP1!0.83!34.19!DRAP1;;chr16:8962544..8962584,-!p2@CARHSP1!0.83!13.96!CARHSP1;;chr2:85980951..85981004,+!p1@ATOH8!0.83!9.77!ATOH8;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.37!IRX3;;chr9:35732514..35732530,+!p5@CREB3!0.83!8.37!CREB3;;chr19:1652555..1652568,-!p2@TCF3!0.82!24.42!TCF3;;chr12:80084737..80084763,-!p3@PAWR!0.82!22.33!PAWR;;chr1:8934931..8934947,-!p4@ENO1!0.82!19.54!ENO1;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.37!IRX5;;chr17:36105074..36105086,-!p2@HNF1B!0.82!5.58!HNF1B;;chr17:45928443..45928473,-!p2@SP6!0.82!5.58!SP6;;chr2:122042770..122042785,-!p1@TFCP2L1!0.82!5.58!TFCP2L1;;chr12:3068634..3068656,+!p5@TEAD4!0.82!5.58!TEAD4;;chr10:104154246..104154347,+!p3@NFKB2!0.81!36.29!NFKB2;;chr1:154975258..154975330,+!p1@ZBTB7B!0.81!21.63!ZBTB7B;;chr11:65667846..65667868,-!p1@FOSL1!0.80!152.82!FOSL1;;chr10:104155455..104155479,+!p1@NFKB2!0.80!85.13!NFKB2;;chr19:17356697..17356762,-!p1@NR2F6!0.80!78.15!NR2F6;;chr17:61920280..61920343,-!p2@SMARCD2!0.80!55.82!SMARCD2;;chr12:3068544..3068597,+!p1@TEAD4!0.80!34.19!TEAD4;;chr17:46622205..46622218,-!p3@HOXB2!0.80!6.28!HOXB2;;chr19:1652575..1652621,-!p1@TCF3!0.79!217.71!TCF3;;chr19:45504688..45504782,+!p1@RELB!0.79!34.19!RELB;;chr2:70314240..70314256,+!p4@PCBP1!0.79!11.16!PCBP1;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.79!9.07!ELK4;;chr12:7079807..7079848,-!p1@PHB2!0.78!979.02!PHB2;;chr11:64073022..64073056,+!p1@ESRRA!0.78!65.59!ESRRA;;chr15:74833584..74833626,+!p1@ARID3B!0.78!12.56!ARID3B;;chr6:34204642..34204664,+!p2@HMGA1!0.77!725.02!HMGA1;;chr16:29817789..29817838,+!p2@MAZ!0.77!73.27!MAZ;;chr16:86544113..86544145,+!p1@FOXF1!0.77!6.28!FOXF1;;chr10:135122868..135122893,+!p3@ZNF511!0.77!4.88!ZNF511;;chr14:36989379..36989390,-!p8@NKX2-1!0.77!4.88!NKX2-1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.77!4.88!ZSCAN1;;chr2:85981107..85981120,+!p3@ATOH8!0.77!4.88!ATOH8;;chr4:149363494..149363543,-!p1@NR3C2!0.77!4.88!NR3C2;;chr17:17740287..17740307,-!p1@SREBF1!0.76!137.47!SREBF1;;chr19:56652643..56652683,+!p1@ZNF444!0.76!28.61!ZNF444;;chr8:145669791..145669834,-!p1@TONSL!0.76!14.65!TONSL;;chr22:42229210..42229229,+!p3@SREBF2!0.76!11.86!SREBF2;;chr10:48355030..48355090,+!p1@ZNF488!0.76!6.28!ZNF488;;chr11:615942..615957,-!p1@IRF7!0.75!48.15!IRF7;;chr20:32274150..32274166,-!p2@E2F1!0.75!9.07!E2F1;;chr9:35732592..35732640,+!p1@CREB3!0.74!65.59!CREB3;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.74!50.24!GLIS2;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.35!TBX2;;chr19:3366625..3366629,+!p4@NFIC!0.74!6.98!NFIC;;chr12:125002739..125002756,-!p6@NCOR2!0.74!6.98!NCOR2;;chr14:75988771..75988826,+!p1@BATF!0.74!6.28!BATF;;chr19:19302931..19302974,-!p1@MEF2BNB-MEF2B,p1@MEF2BNB,p1@MEF2B!0.73!120.72!MEF2B;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.05!TCF19;;chr12:66218598..66218645,+!p2@HMGA2!0.73!22.33!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.73!9.07!HMGA2;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.28!TEAD2;;chr19:19303731..19303783,+!p1@RFXANK!0.72!112.35!RFXANK;;chr17:38498402..38498445,+!p3@RARA!0.72!16.75!RARA;;chr2:169312600..169312606,+!p2@CERS6!0.72!6.98!CERS6;;chr11:62369806..62369837,-!p8@MTA2!0.72!5.58!MTA2;;chr11:65687222..65687240,+!p7@DRAP1!0.72!5.58!DRAP1;;chr20:48807351..48807384,+!p1@CEBPB!0.71!484.27!CEBPB;;chr19:1863568..1863586,-!p1@KLF16!0.71!153.52!KLF16;;chr6:35464817..35464894,-!p1@TEAD3!0.71!71.87!TEAD3;;chr12:132628963..132629027,+!p1@NOC4L!0.71!67.69!NOC4L;;chr2:46524897..46524911,+!p2@EPAS1!0.71!12.56!EPAS1;;chr17:41623009..41623053,-!p4@ETV4!0.71!6.98!ETV4;;chr16:54320158..54320200,-!p5@IRX3!0.71!6.28!IRX3;;chr20:6748325..6748352,+!p1@BMP2!0.71!6.28!BMP2;;chr19:58545369..58545404,+!p2@ZSCAN1!0.71!4.19!ZSCAN1;;chr1:154975229..154975247,+!p6@ZBTB7B!0.71!4.19!ZBTB7B;;chr14:38064590..38064606,-!p2@FOXA1!0.71!4.19!FOXA1;;chr3:69915385..69915438,+!p3@MITF!0.71!4.19!MITF;;chr16:29817841..29817865,+!p1@MAZ!0.70!96.99!MAZ;;chr16:29817665..29817719,+!p3@MAZ!0.70!69.78!MAZ;;chr22:42229246..42229270,+!p2@SREBF2!0.70!57.22!SREBF2;;chr13:73633131..73633149,+!p1@KLF5!0.70!48.15!KLF5;;chr22:21356378..21356422,-!p2@THAP7!0.70!39.77!THAP7;;chr17:17740330..17740349,-!p3@SREBF1!0.70!30.01!SREBF1;;chr2:242576641..242576731,-!p2@THAP4!0.70!17.45!THAP4;;chr12:3069037..3069119,+!p2@TEAD4!0.70!15.35!TEAD4;;chr1:935398..935465,-!p2@HES4!0.70!9.07!HES4;;chrX:129244655..129244697,-!p4@ELF4!0.70!7.68!ELF4;;chr16:29818199..29818216,+!p11@MAZ!0.70!6.98!MAZ;;chr19:13213662..13213686,-!p1@LYL1!0.70!6.28!LYL1;;chr21:36260773..36260804,-!p7@RUNX1!0.70!5.58!RUNX1;;chr11:65686855..65686946,+!p1@DRAP1!0.69!338.43!DRAP1;;chr6:34204973..34204990,+!p4@HMGA1!0.69!59.31!HMGA1;;chr5:92918919..92918942,+!p1@NR2F1!0.69!19.54!NR2F1;;chr17:41623667..41623682,-!p8@ETV4!0.69!4.19!ETV4;;chr19:1863591..1863611,-!p2@KLF16!0.68!41.17!KLF16;;chr7:1570322..1570360,+!p1@MAFK!0.68!36.29!MAFK;;chr8:49833948..49833973,-!p2@SNAI2!0.68!27.21!SN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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000082;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000060;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947 | |||
|ffid_belonging_in_development=CL:0000222 | |ffid_belonging_in_development=CL:0000222 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11590-120G6 | |id=FF:11590-120G6 | ||
|is_a=EFO:0002091;;FF:0000153 | |is_a=EFO:0002091;;FF:0000153 | ||
Line 46: | Line 54: | ||
|library_id=CNhs12084 | |library_id=CNhs12084 | ||
|library_id_phase_based=2:CNhs12084 | |library_id_phase_based=2:CNhs12084 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11590 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.CTTGTA.11590 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11590 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.CTTGTA.11590 | |||
|name=Alveolar Epithelial Cells, donor2 | |name=Alveolar Epithelial Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 53: | Line 67: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
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Line 67: | Line 82: | ||
|rna_tube_id=120G6 | |rna_tube_id=120G6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10002.CTTGTA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 90: | Line 106: | ||
|top_motifs=XCPE1{core}:3.31109148283;ZNF423:3.22258636159;ZNF148:2.58215693175;MYOD1:2.40637441649;POU2F1..3:2.38361292451;SP1:2.36821395205;SNAI1..3:2.20949378969;TFCP2:2.08798183657;GTF2A1,2:2.08254914832;ZEB1:1.916704322;RXRA_VDR{dimer}:1.9137999835;ESRRA:1.85186127108;PPARG:1.71595657259;ESR1:1.68075419646;bHLH_family:1.55853568013;TFAP2{A,C}:1.5240793245;NR5A1,2:1.48014546226;EBF1:1.444847627;TBP:1.3444515749;EP300:1.26003242836;TP53:1.23037600148;HAND1,2:1.2087459471;TEAD1:1.08523718705;LMO2:1.06548143995;ZIC1..3:1.05339904245;TLX1..3_NFIC{dimer}:1.02407261157;T:0.995111363314;RXR{A,B,G}:0.991275038319;TFAP2B:0.975136772849;LEF1_TCF7_TCF7L1,2:0.946712341698;GLI1..3:0.879855175104;TBX4,5:0.782427173292;FOXL1:0.774457423222;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.765939209103;ZBTB6:0.765357308499;RREB1:0.714440180289;JUN:0.683878139371;TFAP4:0.667404514824;IKZF1:0.666353373768;XBP1:0.651113259321;PAX5:0.609700656932;SOX{8,9,10}:0.566571188188;PBX1:0.551466805875;SRF:0.543938232392;SPZ1:0.531931310178;NKX2-3_NKX2-5:0.525388418807;HIC1:0.503360261292;MTF1:0.464591051891;ONECUT1,2:0.454032349029;ELK1,4_GABP{A,B1}:0.442391466457;NFE2L1:0.440923336697;BACH2:0.427363236012;HOX{A5,B5}:0.417500768995;FOS_FOS{B,L1}_JUN{B,D}:0.408592390493;ZNF143:0.383664597266;NR3C1:0.367965196168;REST:0.364418742715;PAX1,9:0.346625717545;NFY{A,B,C}:0.344522429837;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.338902173721;FOXM1:0.318541976971;HNF4A_NR2F1,2:0.308680190766;AR:0.295685068335;NFE2:0.291071483859;PAX8:0.246161490924;SOX2:0.231486373465;VSX1,2:0.230519749291;FOSL2:0.212338324047;NR6A1:0.210033675618;NFKB1_REL_RELA:0.175651079942;TAL1_TCF{3,4,12}:0.141258722363;MAZ:0.125092869121;HNF1A:0.0995383985906;PATZ1:0.0886429369866;NANOG:0.0704317229549;UFEwm:0.0632699277259;ARID5B:0.0626179406361;GZF1:0.0210019512068;KLF4:0.00607244471222;GFI1:0.00058547817252;CDC5L:-0.00025303847285;E2F1..5:-0.016632644947;STAT5{A,B}:-0.0206618469688;FOX{F1,F2,J1}:-0.0246286631453;TOPORS:-0.0257423880763;TFDP1:-0.10611824688;HMX1:-0.125555484654;GTF2I:-0.131585677431;FOXQ1:-0.154681624446;MED-1{core}:-0.158749931775;LHX3,4:-0.162822714446;HLF:-0.165578983316;HIF1A:-0.16864818627;MEF2{A,B,C,D}:-0.169929991609;GATA6:-0.180074188874;ETS1,2:-0.247438724084;CRX:-0.312315337577;STAT2,4,6:-0.344656717026;GFI1B:-0.357154717687;RFX1:-0.373037888487;POU3F1..4:-0.40880988799;RUNX1..3:-0.425236208141;NKX3-2:-0.48784045041;SOX17:-0.495392720374;ZNF238:-0.501287019096;GCM1,2:-0.504781799854;CEBPA,B_DDIT3:-0.519729180667;ATF2:-0.554607828172;MTE{core}:-0.574909564473;NFE2L2:-0.580022544947;PAX2:-0.587115865142;MAFB:-0.601032219796;SPIB:-0.609228751423;HOX{A4,D4}:-0.610660805657;PITX1..3:-0.631040945748;SMAD1..7,9:-0.669983321912;ATF6:-0.671885211835;NRF1:-0.67547062436;POU6F1:-0.675872277002;MZF1:-0.694061740231;ELF1,2,4:-0.695067377265;EGR1..3:-0.721549088304;NHLH1,2:-0.765021672065;ZFP161:-0.76946252911;CREB1:-0.776722609674;HES1:-0.793209471807;NR1H4:-0.810964148684;SPI1:-0.811164343012;HOXA9_MEIS1:-0.814881308238;YY1:-0.820897516608;MYB:-0.824518251689;NFIL3:-0.887122369217;ATF4:-0.90713538415;POU5F1:-0.940154567137;NKX2-2,8:-0.978946159256;RORA:-1.00570454524;PRRX1,2:-1.04013491542;OCT4_SOX2{dimer}:-1.04087608721;SOX5:-1.09446051837;FOXA2:-1.13753708749;PAX3,7:-1.1562339148;EN1,2:-1.15873428752;FOX{D1,D2}:-1.16184302125;FOX{I1,J2}:-1.1622699363;RFX2..5_RFXANK_RFXAP:-1.1702889843;HOX{A6,A7,B6,B7}:-1.20724710794;ATF5_CREB3:-1.21192217231;BREu{core}:-1.21349334131;FOXP3:-1.21892789147;TLX2:-1.22011502;CUX2:-1.22173846875;NANOG{mouse}:-1.26259972726;ADNP_IRX_SIX_ZHX:-1.26697695321;MYFfamily:-1.28052597453;ALX1:-1.28718912325;IRF7:-1.32267840795;POU1F1:-1.33484852588;IRF1,2:-1.34715243763;PAX6:-1.37271979708;ALX4:-1.40039868138;RBPJ:-1.43859671623;STAT1,3:-1.44368846579;TEF:-1.45951930332;DMAP1_NCOR{1,2}_SMARC:-1.46074418289;FOXP1:-1.49491901156;MYBL2:-1.56535622482;DBP:-1.62622768228;PRDM1:-1.62782388387;NFIX:-1.65441089461;TGIF1:-1.65954122898;NFATC1..3:-1.70549933549;ZNF384:-1.71027266307;FOXO1,3,4:-1.75294545046;PDX1:-1.79617127583;HBP1_HMGB_SSRP1_UBTF:-1.79688827176;FOXN1:-1.82746418448;AIRE:-1.83417094236;SREBF1,2:-1.84876455447;NKX3-1:-1.87175305588;EVI1:-1.9032145768;HSF1,2:-1.95064593208;AHR_ARNT_ARNT2:-1.97782811583;FOXD3:-2.246148566;NKX6-1,2:-2.35819501214;IKZF2:-2.37997674254;CDX1,2,4:-2.43019074416;ZBTB16:-2.50568375538;BPTF:-2.67436478872;PAX4:-2.68241926544;HMGA1,2:-2.70769965338;NKX2-1,4:-2.7762962283;GATA4:-2.85569157138 | |top_motifs=XCPE1{core}:3.31109148283;ZNF423:3.22258636159;ZNF148:2.58215693175;MYOD1:2.40637441649;POU2F1..3:2.38361292451;SP1:2.36821395205;SNAI1..3:2.20949378969;TFCP2:2.08798183657;GTF2A1,2:2.08254914832;ZEB1:1.916704322;RXRA_VDR{dimer}:1.9137999835;ESRRA:1.85186127108;PPARG:1.71595657259;ESR1:1.68075419646;bHLH_family:1.55853568013;TFAP2{A,C}:1.5240793245;NR5A1,2:1.48014546226;EBF1:1.444847627;TBP:1.3444515749;EP300:1.26003242836;TP53:1.23037600148;HAND1,2:1.2087459471;TEAD1:1.08523718705;LMO2:1.06548143995;ZIC1..3:1.05339904245;TLX1..3_NFIC{dimer}:1.02407261157;T:0.995111363314;RXR{A,B,G}:0.991275038319;TFAP2B:0.975136772849;LEF1_TCF7_TCF7L1,2:0.946712341698;GLI1..3:0.879855175104;TBX4,5:0.782427173292;FOXL1:0.774457423222;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.765939209103;ZBTB6:0.765357308499;RREB1:0.714440180289;JUN:0.683878139371;TFAP4:0.667404514824;IKZF1:0.666353373768;XBP1:0.651113259321;PAX5:0.609700656932;SOX{8,9,10}:0.566571188188;PBX1:0.551466805875;SRF:0.543938232392;SPZ1:0.531931310178;NKX2-3_NKX2-5:0.525388418807;HIC1:0.503360261292;MTF1:0.464591051891;ONECUT1,2:0.454032349029;ELK1,4_GABP{A,B1}:0.442391466457;NFE2L1:0.440923336697;BACH2:0.427363236012;HOX{A5,B5}:0.417500768995;FOS_FOS{B,L1}_JUN{B,D}:0.408592390493;ZNF143:0.383664597266;NR3C1:0.367965196168;REST:0.364418742715;PAX1,9:0.346625717545;NFY{A,B,C}:0.344522429837;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.338902173721;FOXM1:0.318541976971;HNF4A_NR2F1,2:0.308680190766;AR:0.295685068335;NFE2:0.291071483859;PAX8:0.246161490924;SOX2:0.231486373465;VSX1,2:0.230519749291;FOSL2:0.212338324047;NR6A1:0.210033675618;NFKB1_REL_RELA:0.175651079942;TAL1_TCF{3,4,12}:0.141258722363;MAZ:0.125092869121;HNF1A:0.0995383985906;PATZ1:0.0886429369866;NANOG:0.0704317229549;UFEwm:0.0632699277259;ARID5B:0.0626179406361;GZF1:0.0210019512068;KLF4:0.00607244471222;GFI1:0.00058547817252;CDC5L:-0.00025303847285;E2F1..5:-0.016632644947;STAT5{A,B}:-0.0206618469688;FOX{F1,F2,J1}:-0.0246286631453;TOPORS:-0.0257423880763;TFDP1:-0.10611824688;HMX1:-0.125555484654;GTF2I:-0.131585677431;FOXQ1:-0.154681624446;MED-1{core}:-0.158749931775;LHX3,4:-0.162822714446;HLF:-0.165578983316;HIF1A:-0.16864818627;MEF2{A,B,C,D}:-0.169929991609;GATA6:-0.180074188874;ETS1,2:-0.247438724084;CRX:-0.312315337577;STAT2,4,6:-0.344656717026;GFI1B:-0.357154717687;RFX1:-0.373037888487;POU3F1..4:-0.40880988799;RUNX1..3:-0.425236208141;NKX3-2:-0.48784045041;SOX17:-0.495392720374;ZNF238:-0.501287019096;GCM1,2:-0.504781799854;CEBPA,B_DDIT3:-0.519729180667;ATF2:-0.554607828172;MTE{core}:-0.574909564473;NFE2L2:-0.580022544947;PAX2:-0.587115865142;MAFB:-0.601032219796;SPIB:-0.609228751423;HOX{A4,D4}:-0.610660805657;PITX1..3:-0.631040945748;SMAD1..7,9:-0.669983321912;ATF6:-0.671885211835;NRF1:-0.67547062436;POU6F1:-0.675872277002;MZF1:-0.694061740231;ELF1,2,4:-0.695067377265;EGR1..3:-0.721549088304;NHLH1,2:-0.765021672065;ZFP161:-0.76946252911;CREB1:-0.776722609674;HES1:-0.793209471807;NR1H4:-0.810964148684;SPI1:-0.811164343012;HOXA9_MEIS1:-0.814881308238;YY1:-0.820897516608;MYB:-0.824518251689;NFIL3:-0.887122369217;ATF4:-0.90713538415;POU5F1:-0.940154567137;NKX2-2,8:-0.978946159256;RORA:-1.00570454524;PRRX1,2:-1.04013491542;OCT4_SOX2{dimer}:-1.04087608721;SOX5:-1.09446051837;FOXA2:-1.13753708749;PAX3,7:-1.1562339148;EN1,2:-1.15873428752;FOX{D1,D2}:-1.16184302125;FOX{I1,J2}:-1.1622699363;RFX2..5_RFXANK_RFXAP:-1.1702889843;HOX{A6,A7,B6,B7}:-1.20724710794;ATF5_CREB3:-1.21192217231;BREu{core}:-1.21349334131;FOXP3:-1.21892789147;TLX2:-1.22011502;CUX2:-1.22173846875;NANOG{mouse}:-1.26259972726;ADNP_IRX_SIX_ZHX:-1.26697695321;MYFfamily:-1.28052597453;ALX1:-1.28718912325;IRF7:-1.32267840795;POU1F1:-1.33484852588;IRF1,2:-1.34715243763;PAX6:-1.37271979708;ALX4:-1.40039868138;RBPJ:-1.43859671623;STAT1,3:-1.44368846579;TEF:-1.45951930332;DMAP1_NCOR{1,2}_SMARC:-1.46074418289;FOXP1:-1.49491901156;MYBL2:-1.56535622482;DBP:-1.62622768228;PRDM1:-1.62782388387;NFIX:-1.65441089461;TGIF1:-1.65954122898;NFATC1..3:-1.70549933549;ZNF384:-1.71027266307;FOXO1,3,4:-1.75294545046;PDX1:-1.79617127583;HBP1_HMGB_SSRP1_UBTF:-1.79688827176;FOXN1:-1.82746418448;AIRE:-1.83417094236;SREBF1,2:-1.84876455447;NKX3-1:-1.87175305588;EVI1:-1.9032145768;HSF1,2:-1.95064593208;AHR_ARNT_ARNT2:-1.97782811583;FOXD3:-2.246148566;NKX6-1,2:-2.35819501214;IKZF2:-2.37997674254;CDX1,2,4:-2.43019074416;ZBTB16:-2.50568375538;BPTF:-2.67436478872;PAX4:-2.68241926544;HMGA1,2:-2.70769965338;NKX2-1,4:-2.7762962283;GATA4:-2.85569157138 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11590-120G6;search_select_hide=table117:FF:11590-120G6 | |||
}} | }} |
Latest revision as of 18:10, 4 June 2020
Name: | Alveolar Epithelial Cells, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12084 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12084
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12084
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.617 |
10 | 10 | 0.281 |
100 | 100 | 0.277 |
101 | 101 | 0.0313 |
102 | 102 | 0.295 |
103 | 103 | 0.59 |
104 | 104 | 0.833 |
105 | 105 | 0.131 |
106 | 106 | 0.184 |
107 | 107 | 0.0896 |
108 | 108 | 0.533 |
109 | 109 | 0.00374 |
11 | 11 | 0.367 |
110 | 110 | 0.289 |
111 | 111 | 0.376 |
112 | 112 | 0.788 |
113 | 113 | 0.542 |
114 | 114 | 0.379 |
115 | 115 | 0.0334 |
116 | 116 | 0.517 |
117 | 117 | 0.582 |
118 | 118 | 0.649 |
119 | 119 | 0.613 |
12 | 12 | 0.363 |
120 | 120 | 0.617 |
121 | 121 | 0.478 |
122 | 122 | 0.0992 |
123 | 123 | 0.00472 |
124 | 124 | 0.0326 |
125 | 125 | 0.162 |
126 | 126 | 0.666 |
127 | 127 | 0.55 |
128 | 128 | 0.806 |
129 | 129 | 0.231 |
13 | 13 | 0.143 |
130 | 130 | 0.434 |
131 | 131 | 0.665 |
132 | 132 | 0.124 |
133 | 133 | 0.264 |
134 | 134 | 0.986 |
135 | 135 | 0.154 |
136 | 136 | 0.0217 |
137 | 137 | 0.0377 |
138 | 138 | 0.0778 |
139 | 139 | 0.223 |
14 | 14 | 0.749 |
140 | 140 | 0.629 |
141 | 141 | 0.269 |
142 | 142 | 0.233 |
143 | 143 | 0.928 |
144 | 144 | 0.292 |
145 | 145 | 0.878 |
146 | 146 | 0.0939 |
147 | 147 | 0.762 |
148 | 148 | 0.00384 |
149 | 149 | 0.142 |
15 | 15 | 0.317 |
150 | 150 | 0.292 |
151 | 151 | 0.64 |
152 | 152 | 0.0348 |
153 | 153 | 0.0452 |
154 | 154 | 0.339 |
155 | 155 | 0.237 |
156 | 156 | 0.555 |
157 | 157 | 0.47 |
158 | 158 | 0.628 |
159 | 159 | 0.441 |
16 | 16 | 0.519 |
160 | 160 | 0.229 |
161 | 161 | 0.856 |
162 | 162 | 0.668 |
163 | 163 | 0.518 |
164 | 164 | 0.894 |
165 | 165 | 0.0949 |
166 | 166 | 0.149 |
167 | 167 | 0.0593 |
168 | 168 | 0.621 |
169 | 169 | 0.107 |
17 | 17 | 0.29 |
18 | 18 | 0.94 |
19 | 19 | 0.516 |
2 | 2 | 0.161 |
20 | 20 | 0.902 |
21 | 21 | 0.554 |
22 | 22 | 0.169 |
23 | 23 | 0.925 |
24 | 24 | 0.823 |
25 | 25 | 0.366 |
26 | 26 | 0.101 |
27 | 27 | 0.373 |
28 | 28 | 0.335 |
29 | 29 | 0.553 |
3 | 3 | 0.52 |
30 | 30 | 0.0547 |
31 | 31 | 0.484 |
32 | 32 | 0.323 |
33 | 33 | 0.282 |
34 | 34 | 0.238 |
35 | 35 | 0.0728 |
36 | 36 | 0.849 |
37 | 37 | 0.385 |
38 | 38 | 0.259 |
39 | 39 | 0.757 |
4 | 4 | 0.543 |
40 | 40 | 0.00643 |
41 | 41 | 0.354 |
42 | 42 | 0.586 |
43 | 43 | 0.904 |
44 | 44 | 0.727 |
45 | 45 | 0.221 |
46 | 46 | 0.762 |
47 | 47 | 0.663 |
48 | 48 | 0.459 |
49 | 49 | 0.417 |
5 | 5 | 0.0809 |
50 | 50 | 0.292 |
51 | 51 | 0.675 |
52 | 52 | 0.477 |
53 | 53 | 0.297 |
54 | 54 | 0.922 |
55 | 55 | 0.138 |
56 | 56 | 0.466 |
57 | 57 | 0.431 |
58 | 58 | 0.274 |
59 | 59 | 0.0403 |
6 | 6 | 0.442 |
60 | 60 | 0.574 |
61 | 61 | 0.377 |
62 | 62 | 0.136 |
63 | 63 | 0.497 |
64 | 64 | 0.405 |
65 | 65 | 0.152 |
66 | 66 | 0.477 |
67 | 67 | 0.96 |
68 | 68 | 0.127 |
69 | 69 | 0.0397 |
7 | 7 | 0.79 |
70 | 70 | 0.84 |
71 | 71 | 0.929 |
72 | 72 | 0.63 |
73 | 73 | 0.0121 |
74 | 74 | 0.091 |
75 | 75 | 0.545 |
76 | 76 | 0.276 |
77 | 77 | 0.00237 |
78 | 78 | 0.639 |
79 | 79 | 0.519 |
8 | 8 | 0.48 |
80 | 80 | 0.455 |
81 | 81 | 0.0402 |
82 | 82 | 0.437 |
83 | 83 | 0.618 |
84 | 84 | 0.786 |
85 | 85 | 0.93 |
86 | 86 | 0.906 |
87 | 87 | 0.0254 |
88 | 88 | 0.651 |
89 | 89 | 0.29 |
9 | 9 | 0.577 |
90 | 90 | 3.32272e-4 |
91 | 91 | 0.851 |
92 | 92 | 0.318 |
93 | 93 | 0.442 |
94 | 94 | 0.32 |
95 | 95 | 0.0106 |
96 | 96 | 0.581 |
97 | 97 | 0.914 |
98 | 98 | 0.703 |
99 | 99 | 0.0952 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12084
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000153 human renal glomerular endothelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000666 (fenestrated cell)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
0002188 (glomerular endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0010317 (germ layer / neural crest derived structure)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0001285 (nephron)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000153 (human renal glomerular endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)