Personal tools

FFCP PHASE1:Mm9::chr9:109954520..109954615,+: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|id=chr9:109954520..109954615,+
|DHSsupport=NA
|short_description=p4@Mtap4
|DPIdataset=NA
|description=CAGE_peak_4_at_Mtap4_5end
|association_with_transcript=0bp_to_ENSMUST00000065171,ENSMUST00000163979,ENSMUST00000164930,uc009rtd.1,uc009rte.1_5end
|EntrezGene=17758
|EntrezGene=17758
|HGNC=
|HGNC=
|MCL_coexpression_id=1
|TSSclassifier=NA
|UniProt=E9QKJ8,E9PWC0,E9PZ43,P27546
|UniProt=E9QKJ8,E9PWC0,E9PZ43,P27546
|association_with_transcript=0bp_to_ENSMUST00000065171,ENSMUST00000163979,ENSMUST00000164930,uc009rtd.1,uc009rte.1_5end
|cluster_id=chr9:109954520..109954615,+
|description=CAGE_peak_4_at_Mtap4_5end
|id=chr9:109954520..109954615,+
|ontology_enrichment_celltype=CL:0000221!3.38e-16!44;CL:0000133!3.38e-16!44;CL:0002319!5.54e-16!43;CL:0000117!9.28e-14!23;CL:0000337!9.28e-14!23;CL:0000540!4.45e-13!33;CL:0000047!4.45e-13!33;CL:0000031!4.45e-13!33;CL:0000404!4.45e-13!33;CL:0000055!4.69e-13!50;CL:0000393!8.48e-11!39;CL:0000211!8.48e-11!39
|ontology_enrichment_celltype_v019_2=CL:0000117,1.43e-16,23;CL:0000337,1.43e-16,23;CL:0000221,3.69e-16,44;CL:0000133,3.69e-16,44;CL:0002319,6.87e-16,43;CL:0000540,1.23e-12,33;CL:0000047,1.23e-12,33;CL:0000031,1.23e-12,33;CL:0000404,1.23e-12,33;CL:0000393,4.43e-10,39;CL:0000211,4.43e-10,39
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0001017!8.81e-35!73;UBERON:0005743!8.81e-35!73;UBERON:0000073!1.15e-34!75;UBERON:0001016!1.15e-34!75;UBERON:0000033!4.74e-29!63;UBERON:0001049!8.47e-28!52;UBERON:0005068!8.47e-28!52;UBERON:0006241!8.47e-28!52;UBERON:0007135!8.47e-28!52;UBERON:0004121!4.12e-27!102;UBERON:0000924!4.12e-27!102;UBERON:0006601!4.12e-27!102;UBERON:0000955!4.47e-27!50;UBERON:0006238!4.47e-27!50;UBERON:0002346!2.66e-26!71;UBERON:0003075!2.66e-26!71;UBERON:0007284!2.66e-26!71;UBERON:0002616!3.11e-26!49;UBERON:0003056!2.57e-23!49;UBERON:0002020!1.22e-20!34;UBERON:0003080!2.30e-20!40;UBERON:0002780!1.41e-19!39;UBERON:0001890!1.41e-19!39;UBERON:0006240!1.41e-19!39;UBERON:0002791!7.97e-18!29;UBERON:0003528!7.97e-18!29;UBERON:0001893!7.97e-18!29;UBERON:0007811!3.30e-15!86;UBERON:0000956!4.39e-13!21;UBERON:0001869!4.39e-13!21;UBERON:0000203!4.39e-13!21;UBERON:0000153!3.24e-12!94;UBERON:0002619!3.99e-11!17;UBERON:0003076!6.86e-08!12;UBERON:0003057!6.86e-08!12;UBERON:0002021!1.15e-07!10;UBERON:0000411!1.15e-07!10;UBERON:0001950!1.15e-07!10;UBERON:0000025!6.01e-07!114
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.87e-36,73;UBERON:0001016,1.34e-35,75;UBERON:0002346,2.72e-35,64;UBERON:0003075,2.72e-35,64;UBERON:0007284,2.72e-35,64;UBERON:0000073,5.53e-33,54;UBERON:0004121,1.52e-32,95;UBERON:0000924,1.52e-32,95;UBERON:0006601,1.52e-32,95;UBERON:0001049,3.94e-31,52;UBERON:0005068,3.94e-31,52;UBERON:0006241,3.94e-31,52;UBERON:0007135,3.94e-31,52;UBERON:0010371,6.54e-29,73;UBERON:0000955,1.76e-27,47;UBERON:0006238,1.76e-27,47;UBERON:0002616,1.73e-26,46;UBERON:0003056,3.31e-25,49;UBERON:0002020,4.75e-25,34;UBERON:0003080,4.00e-22,40;UBERON:0010314,1.37e-21,92;UBERON:0003528,1.41e-21,29;UBERON:0002791,1.41e-21,29;UBERON:0001893,1.41e-21,29;UBERON:0002780,3.50e-21,39;UBERON:0001890,3.50e-21,39;UBERON:0006240,3.50e-21,39;UBERON:0000956,9.72e-16,21;UBERON:0001869,9.72e-16,21;UBERON:0000203,9.72e-16,21;UBERON:0002619,2.50e-13,17;UBERON:0003076,2.37e-09,12;UBERON:0003057,2.37e-09,12;UBERON:0002021,4.47e-09,10;UBERON:0000411,4.47e-09,10;UBERON:0001950,4.47e-09,10;UBERON:0002420,5.50e-07,8;UBERON:0007245,5.50e-07,8;UBERON:0010009,5.50e-07,8;UBERON:0010011,5.50e-07,8;UBERON:0000454,5.50e-07,8
|phase1_expression=0.960893082628764,0,0,0,0,0,0,0,0,0.234064526321993,0.171217968225505,0,0,0,0,0,0,0,0,0,14.7975324862861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.304130793658544,8.07605709511399,1.56478268869608,7.41285531693518,12.7417985985994,7.19390626574849,3.49966054063406,14.3752564364972,0,0.725362142011344,0,0,0,0,28.5266209812033,30.1524858185059,24.0855933332348,0.338844532069132,0,0,0,0.7104801149461,10.1864037576258,19.2109152660777,16.279269132431,14.1756235248275,11.3575479129746,28.2794474559766,26.9459619960969,15.8013130987291,16.9646483702278,14.7075005857603,40.7428759697738,85.1674545028202,77.4176927611467,30.7295050411352,27.5377807243253,21.8783615633839,60.0243447852969,40.518907922281,53.7849832174372,22.6864010814724,28.0472211174233,28.8919141029216,0.075726193333184,3.40072020480535,0,0,0,0,0,0,3.23022166303029,0,0,0,2.95771181531029,0,0,0,0,0,0,2.51204535381932,0,0.445326417194474,0,0,0,0,0.117588707135705,0,0,0,0,0,0.441683036920787,0.484875253135222,0,82.5641847572563,120.64130312455,0,0,0,0,86.2794082971779,48.4950638987744,24.2512899577828,51.6258230971061,53.9559614966997,80.2061851999902,63.9230576486965,0,0.870848794270651,0.505445516867349,23.1486041475121,0.260240885925407,1.14951052216736,2.70093194708024,4.67184935290717,9.5251098811859,11.0177799444971,12.9308379892426,69.3325033580562,0,0.189106080167819,0,0,0,0.348252166522167,0,0,0,0,0,0.207125772535502,0,0.180062061461015,0.473489471170421,0,0.462801338662135,2.55787339225449,1.3413670069981,2.21854150497622,3.12663714835613,0.656669856316381,0.810688095458557,1.31579988682799,0.658650345873152,0.402619256281115,124.281359601399,49.3942139420565,0.330418782983798,0.264450566663544,0.213288250535234,0.464473343720877,3.47942145569652,2.21851877085677,1.77902435075896,2.85338439168839,0.474529061544512,1.97638745668813,1.00534083520108,1.98956472041151,1.55971269695296,0.898819408654221,0,0.199141273254367,0.569003702859245,0.342745537829186,0,0.203651327845314,0.193952487167626,0.210407459670956,0.126473074248515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0,0,0.167506257441816,0,0,0,0.221464689648775,0,0.327726629431476,0,0,0,0,0,0,79.9541938139204,74.6638443592334,0,0.252470927204373,2.83957397474631,2.34263246577983,3.23135096599198,0.238968797952552,0.668396022247182,0.283076530788832,1.21443210502468,1.16902343164525,0.395287777946524,93.5045030787459,1.70328102249922,0,0,0.824850614862677,0,0,0.302323556964751,0,0.295301892880773,0.307435147943927,0.258428293168221,0,0,0.316036757935816,0,0,3.06395645178409,3.78128297465751,2.8458910432206,1.50035924522115,0.532020700926821,0.713475270408282,0.822745103010605,3.04464949114599,0,0,0,0,0,0,0.238744688006273,0,0.291480836629851,70.6470400660042,0,0,0,0,0,0,0,0,0,0,0.158167996790568,1.82987520414164,1.72808545314882,1.46361807210128,1.9652630737156,2.02296519577231,1.32245529160537,0.26175594198403,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0.241584120826006,0.288030006257865,0,0.202725215290164,0,0,0,0.198681354781265,0,0,0.100966449948148,0,0,0,0.288635524920988,0,0.226730383615211,0.221985953374065,0,0,0,0,0.549454872801795,0,0,54.2161768912384,50.6357760157895,48.6961186423487,50.5248356090442,57.546931660734,52.1221789198893,43.8764625150674,46.3830839320947,51.2050922152151,55.9181136691966,5.18936737920883,7.98049746802062,6.82934423016537,3.16038732188782,3.98265008993166,2.38996560985018,3.77819437262746,3.5025959730612,3.85103051510178,1.76888048234658,4.05566879824384,4.71565853465191,3.65201879132541,3.77748399188729,4.13535376480416,3.81034953026459,3.94006708212509,5.01563973205633,3.29668720642645,3.53277408322554,2.40008476669791,3.37204031702741,2.86123427936785,2.47088908274958,4.42314087952054,3.46919892355874,3.47563148458268,2.89376682581627,4.20992752922171,3.36685362994643,3.2031454893527,3.94017929502254,0.818462086339379,3.71848418846318,1.54325288784913,7.99393849401427,1.63752125911786,4.29742108096597,1.72159498861959,1.10295709559758,0.927471342481686
|phase1_expression=0.960893082628764,0,0,0,0,0,0,0,0,0.234064526321993,0.171217968225505,0,0,0,0,0,0,0,0,0,14.7975324862861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.304130793658544,8.07605709511399,1.56478268869608,7.41285531693518,12.7417985985994,7.19390626574849,3.49966054063406,14.3752564364972,0,0.725362142011344,0,0,0,0,28.5266209812033,30.1524858185059,24.0855933332348,0.338844532069132,0,0,0,0.7104801149461,10.1864037576258,19.2109152660777,16.279269132431,14.1756235248275,11.3575479129746,28.2794474559766,26.9459619960969,15.8013130987291,16.9646483702278,14.7075005857603,40.7428759697738,85.1674545028202,77.4176927611467,30.7295050411352,27.5377807243253,21.8783615633839,60.0243447852969,40.518907922281,53.7849832174372,22.6864010814724,28.0472211174233,28.8919141029216,0.075726193333184,3.40072020480535,0,0,0,0,0,0,3.23022166303029,0,0,0,2.95771181531029,0,0,0,0,0,0,2.51204535381932,0,0.445326417194474,0,0,0,0,0.117588707135705,0,0,0,0,0,0.441683036920787,0.484875253135222,0,82.5641847572563,120.64130312455,0,0,0,0,86.2794082971779,48.4950638987744,24.2512899577828,51.6258230971061,53.9559614966997,80.2061851999902,63.9230576486965,0,0.870848794270651,0.505445516867349,23.1486041475121,0.260240885925407,1.14951052216736,2.70093194708024,4.67184935290717,9.5251098811859,11.0177799444971,12.9308379892426,69.3325033580562,0,0.189106080167819,0,0,0,0.348252166522167,0,0,0,0,0,0.207125772535502,0,0.180062061461015,0.473489471170421,0,0.462801338662135,2.55787339225449,1.3413670069981,2.21854150497622,3.12663714835613,0.656669856316381,0.810688095458557,1.31579988682799,0.658650345873152,0.402619256281115,124.281359601399,49.3942139420565,0.330418782983798,0.264450566663544,0.213288250535234,0.464473343720877,3.47942145569652,2.21851877085677,1.77902435075896,2.85338439168839,0.474529061544512,1.97638745668813,1.00534083520108,1.98956472041151,1.55971269695296,0.898819408654221,0,0.199141273254367,0.569003702859245,0.342745537829186,0,0.203651327845314,0.193952487167626,0.210407459670956,0.126473074248515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0,0,0.167506257441816,0,0,0,0.221464689648775,0,0.327726629431476,0,0,0,0,0,0,79.9541938139204,74.6638443592334,0,0.252470927204373,2.83957397474631,2.34263246577983,3.23135096599198,0.238968797952552,0.668396022247182,0.283076530788832,1.21443210502468,1.16902343164525,0.395287777946524,93.5045030787459,1.70328102249922,0,0,0.824850614862677,0,0,0.302323556964751,0,0.295301892880773,0.307435147943927,0.258428293168221,0,0,0.316036757935816,0,0,3.06395645178409,3.78128297465751,2.8458910432206,1.50035924522115,0.532020700926821,0.713475270408282,0.822745103010605,3.04464949114599,0,0,0,0,0,0,0.238744688006273,0,0.291480836629851,70.6470400660042,0,0,0,0,0,0,0,0,0,0,0.158167996790568,1.82987520414164,1.72808545314882,1.46361807210128,1.9652630737156,2.02296519577231,1.32245529160537,0.26175594198403,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0.241584120826006,0.288030006257865,0,0.202725215290164,0,0,0,0.198681354781265,0,0,0.100966449948148,0,0,0,0.288635524920988,0,0.226730383615211,0.221985953374065,0,0,0,0,0.549454872801795,0,0,54.2161768912384,50.6357760157895,48.6961186423487,50.5248356090442,57.546931660734,52.1221789198893,43.8764625150674,46.3830839320947,51.2050922152151,55.9181136691966,5.18936737920883,7.98049746802062,6.82934423016537,3.16038732188782,3.98265008993166,2.38996560985018,3.77819437262746,3.5025959730612,3.85103051510178,1.76888048234658,4.05566879824384,4.71565853465191,3.65201879132541,3.77748399188729,4.13535376480416,3.81034953026459,3.94006708212509,5.01563973205633,3.29668720642645,3.53277408322554,2.40008476669791,3.37204031702741,2.86123427936785,2.47088908274958,4.42314087952054,3.46919892355874,3.47563148458268,2.89376682581627,4.20992752922171,3.36685362994643,3.2031454893527,3.94017929502254,0.818462086339379,3.71848418846318,1.54325288784913,7.99393849401427,1.63752125911786,4.29742108096597,1.72159498861959,1.10295709559758,0.927471342481686
|short_description=p4@Mtap4
}}
}}

Latest revision as of 05:15, 26 September 2015

Short description:p4@Mtap4
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_4_at_Mtap4_5end
Coexpression cluster:MCL_coexpression_mm9:1
Association with transcript: 0bp_to_ENSMUST00000065171, ENSMUST00000163979, ENSMUST00000164930, uc009rtd.1, uc009rte.1_5end
EntrezGene:Mtap4
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p4@Mtap4

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.96
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.23
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.17
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A314.80
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.25
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.30
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B38.08
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B71.56
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C27.41
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B812.74
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C37.19
Mouse Astrocytes, donor2.CNhs12078.11552-120C43.50
Mouse Astrocytes, donor3.CNhs12107.11633-122C414.38
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.73
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C328.53
Mouse Granule cells, donor2.CNhs12357.11731-123E330.15
Mouse Granule cells, donor3.CNhs12108.11636-122C724.09
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.34
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.71
Mouse Microglia, donor1.CNhs12629.11718-123C810.19
Mouse Microglia, donor2.CNhs12634.11736-123E819.21
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D516.28
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F514.18
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D911.36
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F128.28
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D526.95
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D215.80
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F216.96
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D614.71
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D340.74
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F385.17
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D777.42
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D430.73
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F427.54
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D821.88
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E460.02
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E540.52
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I653.78
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D622.69
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F628.05
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E128.89
Mouse Schwann, donor1.CNhs12507.11728-123D90.08
Mouse Schwann, donor2.CNhs12573.11746-123F93.40
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.00
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A73.23
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G62.96
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B62.51
accessory axillary lymph node, adult.CNhs10475.1063-29H90.00
adrenal gland, adult.CNhs10508.49-24D70.45
adrenal gland, embryo E14.CNhs11038.406-44C50.00
adrenal gland, embryo E16.CNhs11004.1254-43D60.00
adrenal gland, embryo E17.CNhs11043.1263-45I10.00
adrenal gland, embryo E18.CNhs11026.1262-18F50.00
adrenal gland, neonate N00.CNhs11191.1311-23C10.12
adrenal gland, neonate N25.CNhs11223.1377-27I30.00
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H10.00
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.00
bone (os femoris), neonate N16.CNhs11225.1525-43A60.44
bone (os femoris), neonate N20.CNhs11195.1350-25C30.48
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B282.56
cerebellum, neonate N30.CNhs11135.1395-42I2120.64
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A486.28
corpus striatum, adult.CNhs10487.19-21D848.50
corpus striatum, neonate N00.CNhs11226.630-43F124.25
cortex, adult.CNhs10473.12-14D551.63
cortex, neonate N30.CNhs11107.1392-42F253.96
diencephalon, adult.CNhs10482.20-12F280.21
diencephalon, neonate N30.CNhs11201.1388-42B263.92
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.00
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.87
epididymis, adult.CNhs10490.58-23B20.51
eyeball, adult.CNhs10484.31-12G423.15
eyeball, embryo E12.CNhs11016.345-16C60.26
eyeball, embryo E14.CNhs10521.399-16E21.15
eyeball, embryo E15.CNhs10593.426-16C92.70
eyeball, embryo E17.CNhs11023.1261-18D44.67
eyeball, neonate N00.CNhs11207.633-15C69.53
eyeball, neonate N01.CNhs11140.1532-43E711.02
eyeball, neonate N02.CNhs11205.1551-44G812.93
eyeball, neonate N16.CNhs11188.777-19A269.33
forelimb, embryo E11.CNhs10596.335-25E20.00
forelimb, embryo E12.CNhs10600.359-14H20.19
forelimb, embryo E13.CNhs10589.384-1E20.00
forelimb, embryo E14.CNhs10577.413-26A80.00
forelimb, embryo E15.CNhs11007.437-20E70.00
forelimb, embryo E17.CNhs10598.1517-43C40.35
forelimb, embryo E18.CNhs11008.1520-43B50.00
gonad, embryo E13.CNhs11044.1564-45I60.00
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.21
heart, embryo E12.CNhs11015.353-12F50.00
heart, embryo E13.CNhs11013.376-3I90.18
heart, embryo E14.CNhs10597.403-26D40.47
heart, embryo E15.CNhs11017.431-16C80.00
heart, embryo E16.CNhs11021.457-17C60.46
heart, embryo E17.CNhs11025.479-18E52.56
heart, embryo E18.CNhs11030.1283-20G31.34
heart, neonate N00.CNhs11213.639-21E32.22
heart, neonate N03.CNhs11221.1349-25I23.13
heart, neonate N10.CNhs11118.749-24G10.66
heart, neonate N16.CNhs11209.782-15G10.81
heart, neonate N20.CNhs11127.821-26I61.32
heart, neonate N25.CNhs11196.1351-25D30.66
heart, neonate N30.CNhs11202.1390-42D20.40
hippocampus, adult.CNhs10478.13-16E8124.28
hippocampus, neonate N00.CNhs11228.627-43G149.39
intestinal mucosa, adult.CNhs10506.860-29I30.33
intestine, adult.CNhs10496.178-9A30.26
intestine, embryo E12.CNhs11019.1251-16I50.21
intestine, embryo E13.CNhs11010.381-16D50.46
intestine, embryo E15.CNhs10602.976-16D83.48
intestine, embryo E16.CNhs10585.463-22H42.22
intestine, embryo E17.CNhs10582.482-18D31.78
intestine, embryo E18.CNhs10526.1289-20F72.85
intestine, neonate N00.CNhs11126.644-26D10.47
intestine, neonate N01.CNhs11192.1322-23E91.98
intestine, neonate N06.CNhs11102.688-20B81.01
intestine, neonate N07.CNhs11095.720-20F21.99
intestine, neonate N10.CNhs11098.755-23A51.56
intestine, neonate N20.CNhs11187.827-18D10.90
intestine, neonate N25.CNhs11121.1352-25E30.00
intestine, neonate N30.CNhs11131.1384-42G10.20
kidney, embryo E14.CNhs10606.411-4I90.57
kidney, embryo E15.CNhs10997.434-16F80.34
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.20
kidney, embryo E18.CNhs11001.1288-20C70.19
kidney, neonate N00.CNhs11214.646-21G70.21
kidney, neonate N10.CNhs11206.758-6D50.13
kidney, neonate N20.CNhs11113.832-19I10.00
kidney, neonate N25.CNhs11122.1353-25F30.00
kidney, neonate N30.CNhs11203.1385-42H10.00
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.00
liver, embryo E13.CNhs10524.378-3H60.00
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.00
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.00
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.18
lung, embryo E12.CNhs10522.354-16G20.00
lung, embryo E14.CNhs10604.404-26F80.16
lung, embryo E15.CNhs11020.432-17C50.00
lung, embryo E16.CNhs10998.458-17B60.00
lung, embryo E17.CNhs10605.480-44A60.17
lung, embryo E18.CNhs10583.1287-20I60.00
lung, neonate N00.CNhs11224.640-42C60.00
lung, neonate N06.CNhs11212.683-20E50.00
lung, neonate N07.CNhs11111.715-19A30.22
lung, neonate N10.CNhs11219.750-23E60.00
lung, neonate N20.CNhs11109.822-18A40.33
lung, neonate N25.CNhs11119.1359-25C70.00
lung, neonate N30.CNhs11133.1394-42H20.00
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C279.95
medulla oblongata, neonate N30.CNhs11200.1396-42A374.66
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.25
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E12.84
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E22.34
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E33.23
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.24
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.67
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.28
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D41.21
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D51.17
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.40
olfactory brain, adult.CNhs10489.18-22I993.50
ovary, adult.CNhs10507.91-2I71.70
ovary, embryo E18.CNhs11040.505-44H70.00
ovary, neonate N00.CNhs11217.1299-22I40.00
oviduct, adult pregnant day01.CNhs10500.988-6G60.82
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.00
pancreas, embryo E15.CNhs11042.1556-45F20.30
pancreas, embryo E16.CNhs11003.460-26E50.00
pancreas, embryo E17.CNhs10599.1558-45G30.30
pancreas, embryo E18.CNhs10580.1535-43I70.31
pancreas, neonate N00.CNhs11105.645-26G90.26
pancreas, neonate N01.CNhs11138.1531-43D70.00
pancreas, neonate N02.CNhs11139.1539-43D80.00
pancreas, neonate N16.CNhs11136.787-43B60.32
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G83.06
pituitary gland, embryo E12.CNhs11018.346-16E63.78
pituitary gland, embryo E13.CNhs11009.370-44C72.85
pituitary gland, embryo E14.CNhs11037.398-44A51.50
pituitary gland, embryo E15.CNhs10592.427-16B90.53
pituitary gland, embryo E16.CNhs11036.449-43F60.71
pituitary gland, embryo E17.CNhs11039.1265-44F50.82
pituitary gland, neonate N00.CNhs11190.1308-22E93.04
placenta, adult pregnant day10.CNhs10472.539-13I70.00
placenta, adult pregnant day17.CNhs10464.577-18G30.00
prostate, adult.CNhs10470.859-1F80.00
skin, adult.CNhs10492.30-1C30.00
skin, neonate N00.CNhs11124.650-25G40.00
skin, neonate N03.CNhs11215.662-22H30.00
skin, neonate N06.CNhs11097.693-20I50.24
skin, neonate N10.CNhs11108.762-6C40.00
small intestine, neonate N16.CNhs11114.790-21I10.29
spinal cord, adult.CNhs10505.24-13C970.65
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C10.00
spleen, embryo E18.CNhs11011.1271-21F20.00
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.00
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E30.16
stomach, embryo E15.CNhs10603.1252-16G81.83
stomach, embryo E16.CNhs11022.459-17D41.73
stomach, embryo E17.CNhs11006.1035-18D51.46
stomach, embryo E18.CNhs10999.1286-20C61.97
stomach, neonate N03.CNhs11193.1340-24B82.02
stomach, neonate N07.CNhs11210.718-18A91.32
stomach, neonate N25.CNhs11104.1355-25E40.26
stomach, neonate N30.CNhs11134.1386-42I10.26
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.00
testis, embryo E15.CNhs11034.443-27C50.00
testis, embryo E16.CNhs11033.470-26G50.00
testis, embryo E17.CNhs11029.486-18I50.00
testis, embryo E18.CNhs11027.503-18G50.00
testis, neonate N00.CNhs11189.1300-22B70.00
testis, neonate N07.CNhs11222.726-26I40.00
testis, neonate N10.CNhs11204.763-44D90.00
testis, neonate N20.CNhs11110.839-18H30.24
testis, neonate N30.CNhs11130.1391-42E20.29
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I40.20
thymus, embryo E15.CNhs11005.430-45I20.00
thymus, embryo E16.CNhs11002.456-26C50.00
thymus, embryo E17.CNhs10581.478-18C10.00
thymus, embryo E18.CNhs10595.1273-19G40.20
thymus, neonate N02.CNhs11181.1541-43F80.00
thymus, neonate N03.CNhs11137.2104-43C70.00
thymus, neonate N06.CNhs11197.681-26C40.10
thymus, neonate N07.CNhs11211.713-19D30.00
thymus, neonate N10.CNhs11194.748-24E40.00
thymus, neonate N20.CNhs11186.820-7A20.00
thymus, neonate N25.CNhs11125.1362-25G70.29
thymus, neonate N30.CNhs11132.1393-42G20.00
tongue, adult.CNhs10499.32-1B40.23
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.22
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E40.00
uterus, adult pregnant day19.CNhs10497.590-15F50.00
uterus, adult.CNhs10509.92-27E50.55
vagina, adult.CNhs10502.89-27D50.00
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A154.22
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A250.64
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A348.70
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D750.52
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A457.55
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A552.12
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A643.88
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A746.38
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A851.21
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A955.92
whole body, embryo E11.CNhs11014.324-5I85.19
whole body, embryo E12.CNhs10587.857-27C97.98
whole body, embryo E13.CNhs10512.372-23H26.83
whole body, embryo E14.5.CNhs10578.420-27D23.16
whole body, embryo E14.CNhs10519.395-14B13.98
whole body, embryo E16.CNhs10514.453-14F22.39
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G53.78
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G53.50
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G53.85
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G51.77
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G54.06
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G54.72
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G53.65
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G53.78
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G54.14
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G53.81
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G53.94
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G55.02
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G53.30
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G53.53
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G52.40
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G53.37
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G52.86
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G52.47
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G54.42
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G53.47
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G53.48
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G52.89
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G54.21
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G53.37
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G53.20
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G53.94
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G50.82
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G53.72
whole body, embryo E17.5.CNhs10513.490-9F91.54
whole body, embryo E17.CNhs10517.475-3I57.99
whole body, embryo E18.CNhs10516.493-3B31.64
whole body, neonate N00.CNhs10525.657-19C24.30
whole body, neonate N01.CNhs10576.659-23C61.72
whole body, neonate N06.CNhs10515.692-21D11.10
whole body, neonate N10.CNhs10518.761-6B40.93





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.43e-1623
neuroblast (sensu Vertebrata)1.43e-1623
ectodermal cell3.69e-1644
neurectodermal cell3.69e-1644
neural cell6.87e-1643
neuron1.23e-1233
neuronal stem cell1.23e-1233
neuroblast1.23e-1233
electrically signaling cell1.23e-1233
electrically responsive cell4.43e-1039
electrically active cell4.43e-1039

Uber anatomy
Ontology termp-valuen
central nervous system4.87e-3673
nervous system1.34e-3575
neurectoderm2.72e-3564
neural plate2.72e-3564
presumptive neural plate2.72e-3564
regional part of nervous system5.53e-3354
ectoderm-derived structure1.52e-3295
ectoderm1.52e-3295
presumptive ectoderm1.52e-3295
neural tube3.94e-3152
neural rod3.94e-3152
future spinal cord3.94e-3152
neural keel3.94e-3152
ecto-epithelium6.54e-2973
brain1.76e-2747
future brain1.76e-2747
regional part of brain1.73e-2646
pre-chordal neural plate3.31e-2549
gray matter4.75e-2534
anterior neural tube4.00e-2240
structure with developmental contribution from neural crest1.37e-2192
brain grey matter1.41e-2129
regional part of telencephalon1.41e-2129
telencephalon1.41e-2129
regional part of forebrain3.50e-2139
forebrain3.50e-2139
future forebrain3.50e-2139
cerebral cortex9.72e-1621
cerebral hemisphere9.72e-1621
pallium9.72e-1621
regional part of cerebral cortex2.50e-1317
posterior neural tube2.37e-0912
chordal neural plate2.37e-0912
occipital lobe4.47e-0910
visual cortex4.47e-0910
neocortex4.47e-0910
basal ganglion5.50e-078
nuclear complex of neuraxis5.50e-078
aggregate regional part of brain5.50e-078
collection of basal ganglia5.50e-078
cerebral subcortex5.50e-078
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Mm9::chr9:109954520..109954615,%2B&oldid=4235176"