FF:10170-103B8: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005484 | ||
| | |accession_numbers=CAGE;DRX008682;DRR009554;DRZ000979;DRZ002364;DRZ012329;DRZ013714 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000200,UBERON:0001870,UBERON:0000956,UBERON:0000479,UBERON:0002702,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000004 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.30!198.48!PEG3;;chr21:34442439..34442455,+!p1@OLIG1!2.23!170.13!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.21!160.38!TSC22D4;;chr9:114287433..114287513,+!p1@ZNF483!2.14!337.59!ZNF483;;chr17:53342311..53342400,+!p1@HLF!2.06!129.37!HLF;;chr9:77112244..77112262,+!p1@RORB!2.03!119.62!RORB;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!2.00!98.35!SMARCE1;;chr2:162272785..162272836,+!p1@TBR1!1.93!84.18!TBR1;;chrX:25034067..25034088,-!p1@ARX!1.92!81.52!ARX;;chr4:81118647..81118666,+!p1@PRDM8!1.91!105.44!PRDM8;;chr10:64134120..64134183,+!p1@ZNF365!1.91!94.81!ZNF365;;chr4:57547454..57547469,-!p1@HOPX!1.88!75.32!HOPX;;chr5:88178983..88179012,-!p1@MEF2C!1.86!515.69!MEF2C;;chr15:80733570..80733659,+!p2@ARNT2!1.84!68.23!ARNT2;;chr2:2334997..2335053,-!p1@MYT1L!1.82!64.68!MYT1L;;chr15:80735246..80735321,+!p3@ARNT2!1.81!62.91!ARNT2;;chr3:181429704..181429722,+!p1@SOX2!1.75!55.82!SOX2;;chr2:166326200..166326216,+!p1@CSRNP3!1.71!72.66!CSRNP3;;chr21:34442540..34442560,+!p2@OLIG1!1.71!50.51!OLIG1;;chr14:29235961..29236008,+!p1@FOXG1!1.70!49.62!FOXG1;;chr2:95963052..95963106,+!p1@KCNIP3!1.70!48.73!KCNIP3;;chr8:40755333..40755352,-!p1@ZMAT4!1.70!48.73!ZMAT4;;chr17:37764128..37764258,-!p1@NEUROD2!1.70!48.73!NEUROD2;;chr18:53070846..53070902,-!p6@TCF4!1.70!48.73!TCF4;;chr19:13135582..13135600,+!p3@NFIX!1.67!46.08!NFIX;;chr7:31380292..31380351,-!p1@NEUROD6!1.64!42.53!NEUROD6;;chr10:48355030..48355090,+!p1@ZNF488!1.62!51.39!ZNF488;;chr2:60781201..60781258,-!p3@BCL11A!1.62!40.76!BCL11A;;chr19:13135386..13135435,+!p4@NFIX!1.56!35.44!NFIX;;chrX:85969626..85969664,+!p1@DACH2!1.56!35.44!DACH2;;chr22:38380543..38380569,-!p1@SOX10!1.54!33.67!SOX10;;chr2:95963120..95963136,+!p2@KCNIP3!1.53!32.78!KCNIP3;;chr10:64133862..64133884,+!p4@ZNF365!1.52!31.90!ZNF365;;chr11:113930425..113930471,+!p1@ZBTB16!1.50!43.42!ZBTB16;;chr12:106976774..106976788,+!p1@RFX4!1.49!30.13!RFX4;;chr19:57352109..57352153,-!p2@ZIM2!1.49!30.13!ZIM2;;chr7:63505799..63505904,+!p1@ZNF727!1.48!29.24!ZNF727;;chr5:88179017..88179046,-!p2@MEF2C!1.47!111.64!MEF2C;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.45!27.47!POU3F3;;chr11:125034640..125034655,+!p1@PKNOX2!1.44!26.58!PKNOX2;;chr11:61520075..61520136,+!p1@C11orf9!1.43!54.05!C11orf9;;chr15:80696703..80696754,+!p1@ARNT2!1.43!34.56!ARNT2;;chr19:38085768..38085821,+!p1@ZNF540!1.41!36.33!ZNF540;;chr3:181429741..181429767,+!p2@SOX2!1.41!24.81!SOX2;;chr4:57522598..57522664,-!p3@HOPX!1.40!23.92!HOPX;;chr10:119302232..119302265,+!p1@EMX2!1.40!23.92!EMX2;;chr11:8102846..8102892,+!p1@TUB!1.39!32.78!TUB;;chr3:141105705..141105770,+!p4@ZBTB38!1.39!28.35!ZBTB38;;chr14:33403881..33403924,+!p1@NPAS3!1.38!23.04!NPAS3;;chr1:151032860..151032918,+!p1@MLLT11!1.37!254.30!MLLT11;;chr9:126774018..126774055,+!p1@LHX2!1.36!22.15!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.36!22.15!LHX2;;chr12:106976678..106976708,+!p2@RFX4!1.35!21.27!RFX4;;chr21:34398234..34398250,+!p1@OLIG2!1.35!21.27!OLIG2;;chr18:53070913..53070933,-!p16@TCF4!1.33!20.38!TCF4;;chr2:192015750..192015793,-!p2@STAT4!1.32!26.58!STAT4;;chr4:57522166..57522260,-!p2@HOPX!1.32!23.04!HOPX;;chr2:180726291..180726311,-!p1@ZNF385B!1.31!19.49!ZNF385B;;chr19:46801639..46801699,+!p1@HIF3A!1.31!19.49!HIF3A;;chr17:7492684..7492778,-!p2@SOX15!1.30!39.87!SOX15;;chr12:26277817..26277863,-!p2@BHLHE41!1.29!24.81!BHLHE41;;chr10:31610110..31610159,+!p2@ZEB1!1.29!18.61!ZEB1;;chr2:162272889..162272915,+!p2@TBR1!1.29!18.61!TBR1;;chr3:24536253..24536328,-!p1@THRB!1.28!33.67!THRB;;chr2:145277882..145277967,-!p3@ZEB2!1.28!31.01!ZEB2;;chrX:118739835..118739862,-!p1@NKRF!1.27!19.49!NKRF;;chr14:29236269..29236285,+!p3@FOXG1!1.27!17.72!FOXG1;;chr11:125034605..125034636,+!p2@PKNOX2!1.25!16.84!PKNOX2;;chr14:29234581..29234601,+!p2@FOXG1!1.25!16.84!FOXG1;;chr3:141105235..141105307,+!p7@ZBTB38!1.25!16.84!ZBTB38;;chr8:53322304..53322340,-!p1@ST18!1.25!16.84!ST18;;chr2:166428839..166428859,+!p2@CSRNP3!1.23!15.95!CSRNP3;;chrX:118739782..118739829,-!p2@NKRF!1.23!15.95!NKRF;;chr16:1031762..1031781,+!p1@SOX8!1.21!15.06!SOX8;;chr12:26277956..26277980,-!p1@BHLHE41!1.18!50.51!BHLHE41;;chr15:31658288..31658338,+!p4@KLF13!1.18!14.18!KLF13;;chr9:126774058..126774081,+!p3@LHX2!1.18!14.18!LHX2;;chr1:151032922..151032951,+!p2@MLLT11!1.17!23.04!MLLT11;;chr17:70117153..70117174,+!p1@SOX9!1.16!138.23!SOX9;;chr19:38720294..38720348,-!p1@DPF1!1.16!16.84!DPF1;;chr21:34442584..34442587,+!p3@OLIG1!1.16!13.29!OLIG1;;chr10:64134045..64134083,+!p3@ZNF365!1.16!13.29!ZNF365;;chr5:138609489..138609542,+!p8@MATR3!1.16!13.29!MATR3;;chr6:15401104..15401166,+!p5@JARID2!1.16!13.29!JARID2;;chr2:166428861..166428883,+!p3@CSRNP3!1.16!13.29!CSRNP3;;chr2:60780753..60780800,-!p1@BCL11A!1.13!62.02!BCL11A;;chr2:60780607..60780624,-!p2@BCL11A!1.13!38.10!BCL11A;;chr1:151032782..151032801,+!p4@MLLT11!1.13!24.81!MLLT11;;chr11:113930291..113930339,+!p2@ZBTB16!1.13!20.38!ZBTB16;;chr11:31832862..31832884,-!p2@PAX6!1.13!12.40!PAX6;;chr12:103351444..103351461,+!p1@ASCL1!1.13!12.40!ASCL1;;chr14:58798013..58798071,+!p2@ARID4A!1.13!12.40!ARID4A;;chr22:41763452..41763466,+!p2@TEF!1.13!12.40!TEF;;chr2:172949484..172949522,+!p1@DLX1!1.13!12.40!DLX1;;chr3:24536332..24536358,-!p2@THRB!1.13!12.40!THRB;;chr1:151032142..151032195,+!p5@MLLT11!1.11!23.04!MLLT11;;chr1:214161272..214161322,+!p1@PROX1!1.11!16.84!PROX1;;chr2:2328725..2328739,-!p5@MYT1L!1.10!11.52!MYT1L;;chr2:2335070..2335098,-!p4@MYT1L!1.10!11.52!MYT1L;;chr11:31832658..31832681,-!p1@PAX6!1.10!11.52!PAX6;;chr19:13135566..13135577,+!p9@NFIX!1.10!11.52!NFIX;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.10!11.52!ZBED1;;chr5:92919375..92919438,+!p6@NR2F1!1.09!12.40!NR2F1;;chr10:38265517..38265591,-!p1@ZNF25!1.08!43.42!ZNF25;;chr12:54785074..54785122,-!p2@ZNF385A!1.08!16.84!ZNF385A;;chr5:92920256..92920282,+!p7@NR2F1!1.08!13.29!NR2F1;;chr6:126112039..126112062,+!p8@NCOA7!1.08!13.29!NCOA7;;chr20:62680984..62680999,-!p1@SOX18!1.07!14.18!SOX18;;chr3:126076242..126076257,-!p1@KLF15!1.07!13.29!KLF15;;chr2:172950227..172950249,+!p2@DLX1!1.07!10.63!DLX1;;chr19:46800289..46800327,+!p2@HIF3A!1.07!10.63!HIF3A;;chr7:73038839..73038862,-!p1@MLXIPL!1.07!10.63!MLXIPL;;chr14:58797974..58798011,+!p3@ARID4A!1.07!10.63!ARID4A;;chr1:151032739..151032748,+!p6@MLLT11!1.06!13.29!MLLT11;;chr17:4890919..4890985,-!p1@CAMTA2!1.05!97.47!CAMTA2;;chr14:75894391..75894435,+!p2@JDP2!1.04!11.52!JDP2;;chr20:3388541..3388575,-!p2@C20orf194!1.03!38.99!C20orf194;;chr5:178368186..178368238,+!p1@ZNF454!1.03!17.72!ZNF454;;chr8:145560371..145560449,-!p1@SCRT1!1.03!9.75!SCRT1;;chr11:113930401..113930422,+!p3@ZBTB16!1.03!9.75!ZBTB16;;chr14:33403648..33403710,+!p3@NPAS3!1.03!9.75!NPAS3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.03!9.75!POU3F3;;chr2:162273101..162273118,+!p7@TBR1!1.03!9.75!TBR1;;chr2:180726254..180726275,-!p4@ZNF385B!1.03!9.75!ZNF385B;;chr3:21792682..21792720,-!p1@ZNF385D!1.03!9.75!ZNF385D;;chr19:58545454..58545498,+!p1@ZSCAN1!1.03!9.75!ZSCAN1;;chr19:7580549..7580596,+!p3@ZNF358!1.03!9.75!ZNF358;;chr16:67198633..67198671,+!p1@HSF4!1.03!9.75!HSF4;;chr19:21512202..21512225,-!p1@ZNF708!1.01!48.73!ZNF708;;chr1:151032833..151032850,+!p3@MLLT11!1.01!21.27!MLLT11;;chr13:45010939..45011033,-!p1@TSC22D1!0.99!583.92!TSC22D1;;chr11:66188503..66188511,+!p1@NPAS4!0.99!8.86!NPAS4;;chr20:42544782..42544828,+!p4@TOX2!0.99!8.86!TOX2;;chr20:42574529..42574563,+!p3@TOX2!0.99!8.86!TOX2;;chr7:31380379..31380392,-!p2@NEUROD6!0.99!8.86!NEUROD6;;chr8:22550530..22550609,-!p2@EGR3!0.99!8.86!EGR3;;chr8:30890810..30890880,-!p1@PURG!0.99!8.86!PURG;;chr9:77112225..77112238,+!p2@RORB!0.99!8.86!RORB;;chr2:162273241..162273253,+!p4@TBR1!0.99!8.86!TBR1;;chr2:180726331..180726344,-!p5@ZNF385B!0.99!8.86!ZNF385B;;chr2:2330039..2330072,-!p6@MYT1L!0.99!8.86!MYT1L;;chr2:73520667..73520683,-!p1@EGR4!0.99!8.86!EGR4;;chr3:147127177..147127194,+!p2@ZIC1!0.99!8.86!ZIC1;;chr18:53068911..53068935,-!p4@TCF4!0.98!9.75!TCF4;;chrX:84499081..84499115,+!p2@ZNF711!0.97!12.40!ZNF711;;chr18:14132422..14132440,-!p1@ZNF519!0.97!11.52!ZNF519;;chr8:106330696..106330719,+!p2@ZFPM2!0.97!10.63!ZFPM2;;chr5:138629628..138629688,+!p2@MATR3!0.96!195.82!MATR3;;chr7:86781858..86781879,+!p3@DMTF1!0.96!13.29!DMTF1;;chr8:60031682..60031710,-!p2@TOX!0.96!13.29!TOX;;chr8:106330656..106330684,+!p1@ZFPM2!0.95!21.27!ZFPM2;;chr16:51185318..51185348,-!p2@SALL1!0.95!7.97!SALL1;;chr9:2159850..2159880,+!p14@SMARCA2!0.95!7.97!SMARCA2;;chr2:162272716..162272753,+!p3@TBR1!0.95!7.97!TBR1;;chr2:162273254..162273267,+!p6@TBR1!0.95!7.97!TBR1;;chr2:162273893..162273908,+!p12@TBR1!0.95!7.97!TBR1;;chr15:61521417..61521460,-!p2@RORA!0.94!17.72!RORA;;chr8:60031762..60031803,-!p3@TOX!0.94!11.52!TOX;;chr11:8102819..8102845,+!p3@TUB!0.94!9.75!TUB;;chr19:53636125..53636178,-!p1@ZNF415!0.93!22.15!ZNF415;;chr8:60031619..60031676,-!p1@TOX!0.93!16.84!TOX;;chr5:88179230..88179270,-!p4@MEF2C!0.93!15.06!MEF2C;;chr19:38183208..38183225,-!p1@ZNF781!0.93!9.75!ZNF781;;chr9:14314131..14314147,-!p2@NFIB!0.92!42.53!NFIB;;chr2:200323414..200323455,-!p1@SATB2!0.92!15.95!SATB2;;chr2:162273196..162273210,+!p5@TBR1!0.91!7.09!TBR1;;chr2:42721205..42721307,+!p4@MTA3!0.91!7.09!MTA3;;chr2:73144617..73144654,+!p1@EMX1!0.91!7.09!EMX1;;chr5:88081308..88081333,-!p8@MEF2C!0.91!7.09!MEF2C;;chr7:31380502..31380515,-!p3@NEUROD6!0.91!7.09!NEUROD6;;chr8:145560111..145560165,-!p2@SCRT1!0.91!7.09!SCRT1;;chr9:124976328..124976372,-!p2@LHX6!0.91!7.09!LHX6;;chr15:61521462..61521482,-!p4@RORA!0.91!7.09!RORA;;chr19:13135731..13135787,+!p10@NFIX!0.91!7.09!NFIX;;chr12:103352277..103352324,+!p2@ASCL1!0.91!7.09!ASCL1;;chr12:54779511..54779577,-!p5@ZNF385A!0.91!7.09!ZNF385A;;chrX:102000987..102001029,+!p3@BHLHB9!0.91!7.09!BHLHB9;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.09!NPAS1;;chr1:217263131..217263207,-!p4@ESRRG!0.91!7.09!ESRRG;;chr21:39870339..39870443,-!p1@ERG!0.91!7.09!ERG;;chr3:18466787..18466839,-!p1@SATB1!0.90!32.78!SATB1;;chr1:8585945..8586056,-!p3@RERE!0.90!23.92!RERE;;chr1:244219775..244219893,+!p2@ZNF238!0.90!9.75!ZNF238;;chr12:54785054..54785072,-!p4@ZNF385A!0.90!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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000200;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001870;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002702;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 41: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10170-103B8 | |||
|is_a=FF:0000004;;FF:0000210;;UBERON:0002702;;UBERON:0007023 | |is_a=FF:0000004;;FF:0000210;;UBERON:0002702;;UBERON:0007023 | ||
|is_obsolete= | |||
|library_id=CNhs13796 | |||
|library_id_phase_based=2:CNhs13796 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10170 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10170 | |||
|name=medial frontal gyrus - adult, donor10196 | |||
|namespace= | |namespace= | ||
|part_of= | |part_of= | ||
|profile_cagescan= | |||
|profile_hcage=CNhs13796,LSID1086,release014,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq= | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.282496559096652,0.275557388108753,-0.00180474408476072,0.52283651311144,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.177599491840696,0,0,0.774913839831833,0,0,0,0,0,0,0,0,0,0,0,0,-0.0955958289958837,0.275557388108753,0,0,0,0,0,0,0,0.197192273478685,0,0,0,0.657464387223128,0,0.0783710046022051,0,0.81087806836809,0,0,0.560120760010031,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275557388108753,0,0,0,0,0,0,0,0,0,0.176034592359981,0.442814589183038,0.566519641937233,0,0.16057045446588,0.00706582609502215,0.438950839778507,0.281633992186778,0,0,0,-0.0980353512377064,0.280935485440259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271039953125186,0.275557388108753,0,0,-0.0440642112897698,-0.231981297814317,0,0,0.014494741712515,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,1.18118853466424,0,0.275557388108753,0,0,0.275557388108753,0.857481895765713,0,0,0,0,0.316089109087992,0.137778694054377,0.0891817656215482,0.132042245585281,0,0,0.858222407268194,0,0,0.253160677372323,0.442814589183038,0.442814589183038,0.275557388108753,0.275557388108753,0.563267984373557,0.442814589183038,-0.128119866952565,0,0.225144836519438,0.650903015613111,0,0,0,0,0.494998018263598,0,0.416336206182608,0.37447032810567,0,0,0,0.275557388108753,0.512426739082587,0.275557388108753,0.613947610301553,0.652106925771877,1.61307089574795,0.133365937529979,0.387102092401856,0.0676076897333337,0,0.137778694054377,0.550411924940251,-0.283551819297594,0,0,0.245633695295773,0.737976842383023,0,0,1.89712158616572,0,-0.243907696394599,-0.248868050382253,0,0.263198356118918,0,0,0,0,0,0.563267984373557,0,0.275557388108753,1.25128030727913,0,0,0.08028522723294,-0.0514312085702156,0.137778694054377,0,0.275557388108753,0,0.30701029435815,0,0.122123720660337,-0.0977287678478135,-0.269631976484861,0.221407294591519,-0.481380591463761,0.0655858499587542,1.12405609603268,0.013267348023076,-0.0841229842861209,0.303115225927535,0.760468580239556,-0.189981719549847,0,0.645848511710026,0.166743131039623,0.338915018922749,-0.421293893568051,0.006094502563628,-0.237501563772118,0.122883426727893,0,0,0,0.142726642373265,0.124891128857052,0.173811093316876,0.073153269896783,0.97887775360317,0.450175501793444,0.277321888671964,0.274457448561828,0.0999191552838326,1.44371836774953,0.72375208176764,0.278898873480959,0.083619916198324,0.226858069832161,0.275557388108753,0.173897175864143,0.361017870081495,0.121958322503372,-0.340268785069926,0,-0.0411628726279422,0.37447032810567,0.923242123891877,0.229480466835985,0.158765874377479,0.442814589183038,0.0187911486599238,-0.578777230871412,0,0,0,0.372863553108353,0.907870429610695,-0.12112288218779,0.87229433094814,0.0427018265532085,0.316133542401868,0.917025715244936,-0.0906672661525305,-0.15950738629821,0.188914665897271,0.149962271116861,-0.146009897457394,0.73320299288426,0.23120528493723,0.125698303949407,0.00944146810138299,0.0381652251471807,-0.164990696339003,0.435087090373976,1.98289210569242,-0.287657344592693,-0.265566062567287,-0.279642658609638,-0.22567188041667,-0.000195544883503929,0.646700261620006,0.116638261530207,0.345605151825299,-0.403940743512771,0.112923824887387,0.546683619565045,0.147607014283576,-0.113263996402376,1.12726534484279,-0.205158515330167,0,-0.0224842349011573,0.117030635749888,0.218175012642441,0.129569541098076,0,0.0128922176736572,1.30275255960823,0.275557388108753,0.185047717934145,-0.0105278067811723,0,0.125190304774114,0.0371311275827114,0.207762258376566,0.142644535507584,0.114685051367135,0.502340554241996,1.70432058002024,1.61143723884307,0.570025106599452,0.421988349458739,0.563267984373557,0.174338211727494,-0.0459349298398396,0.0532483460278331,0.326843515748104,0.563267984373557,0,0.154769911169281,0.332354771904277,0.275557388108753,-0.0426600794444737,0.540765653942946,0.847886655065103,0.189488247696283,0.504606150643629,0.173011182732523,0,0.275557388108753,0.0980296221435776,1.62987020093543,0.255714217106996,0,0,-0.112102602544447,0,0,0.428740947882856,2.1381589614903,0.110143233465112,0,0,0,0,0,0,0.0758865036161308,-0.103252890727103,0.208434654157109,0,-0.0909026026893958,0,0,0,0,0,0.0413704239804147,0.0990147987761094,0,-1.02906285444612,0,-0.12301741567642,0,0,0,0,0.227091186629564,0.239578027088315,0.275557388108753,-0.131862706497632,0,0,0,0.953015760153635,0.356673599393827,0,0,0,0,0.385084132129374,0.187291147612685,0,0,0,0.286313582771766,0.800470249162006,0.275557388108753,0,0.0888426405229049,-0.27353536550943,0,0.179506912251892,0.563267984373557,0.0133569929882613,0.0357747135971813,0.949695265698711,0.0533377384664663,-0.0410207962257675,-1.92724216203244,-0.509150091486456,0.275557388108753,0,0.39611725543324,0,0,-0.760386933524494,0.187554248495987,0.275557388108753,0.137778694054377,0,0,0,0,0.275557388108753,0,0.228500076783283,0,0,0.0451941620652676,0,0,0.734827094095294,0,0.657464387223128,0,0,0,0.13243287544145,0.183333331450243,0.275557388108753,0,0.151800719022206,0,0,0,0.275557388108753,0.113672670975473,0.292185555672706,0,0,0,0,0,0,0,0,0.0918420447103145,0,0,0,0,0,0.81087806836809,0,0,0,0,0.388208638999751,0,0,-0.00180474408476072,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152238302073306,-0.135284228060324,0,0,0,0,0,0.275557388108753,0,0.382631089017037,0,0.657464387223128,0,0,1.23375073743452,0,0,0,-0.104796384789156,0,0.282496559096652,0,0,0.442814589183038,0.137778694054377,0,0,0,0,0,0,0.563267984373557,0,0,0,0,0,0,0,0.496953472257493,0,0,-0.602950273389858,0.541606003542767,0.370256871250218,0.0854697230456432,0,0,0.0490056395537366,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275557388108753,0,0,0,0,0,0.328732193611564,0.17933141681875,0,0,0,0,0,0,0,0.177599491840696,0,0,0.0457458842538503,0,0,0,0,0,0.0032460844134958,0.0407553529548545,-0.145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| |||
|rna_box=103 | |||
|rna_catalog_number= | |||
|rna_concentration=0.98496 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230=2.24 | |||
|rna_od260/280=2.08 | |||
|rna_position=B8 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=103B8 | |||
|rna_weight_ug=73.872 | |||
|sample_age=60 | |||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |||
|sample_cell_line= | |||
|sample_cell_lot=NA | |||
|sample_cell_type=CELL MIXTURE - tissue sample | |||
|sample_collaboration=Peter Heutink | |||
|sample_company= | |||
|sample_description= | |||
|sample_dev_stage= | |||
|sample_disease= | |||
|sample_donor(cell lot)=donor: 10196 | |||
|sample_ethnicity= | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.5153157254908e-273!GO:0005737;cytoplasm;1.12976801865922e-154!GO:0044444;cytoplasmic part;3.30851513862712e-107!GO:0043226;organelle;5.78195720512577e-104!GO:0043229;intracellular organelle;2.16735459241256e-103!GO:0043227;membrane-bound organelle;2.92836081322987e-97!GO:0043231;intracellular membrane-bound organelle;4.45895933043807e-97!GO:0044422;organelle part;1.85220500255466e-72!GO:0044446;intracellular organelle part;1.51585845895321e-71!GO:0032991;macromolecular complex;1.62475465510794e-70!GO:0005515;protein binding;3.39621497422526e-56!GO:0030529;ribonucleoprotein complex;3.16718487993419e-51!GO:0005739;mitochondrion;1.64841405442445e-50!GO:0016043;cellular component organization and biogenesis;1.36463594085738e-43!GO:0003723;RNA binding;3.01755661226893e-43!GO:0015031;protein transport;2.82737052550542e-41!GO:0033036;macromolecule localization;4.14040797650643e-41!GO:0044429;mitochondrial part;4.81023520307319e-38!GO:0008104;protein localization;8.07693000339502e-38!GO:0043234;protein complex;9.89424418335352e-38!GO:0031090;organelle membrane;1.11410312034438e-37!GO:0045184;establishment of protein localization;3.57159464413324e-37!GO:0043233;organelle lumen;5.06870797751459e-34!GO:0031974;membrane-enclosed lumen;5.06870797751459e-34!GO:0044428;nuclear part;3.24125059438048e-32!GO:0046907;intracellular transport;3.33921527680035e-32!GO:0005840;ribosome;1.4375672573012e-29!GO:0031975;envelope;3.26556122448867e-29!GO:0031967;organelle envelope;3.33894770171478e-29!GO:0006396;RNA processing;8.52154041042152e-29!GO:0051649;establishment of cellular localization;9.58573668810137e-29!GO:0051641;cellular localization;2.05565835902574e-28!GO:0016071;mRNA metabolic process;2.13229684772698e-28!GO:0008380;RNA splicing;2.44904042361458e-27!GO:0044238;primary metabolic process;3.35301014316503e-27!GO:0005829;cytosol;5.68968468384347e-27!GO:0044237;cellular metabolic process;1.19126360142323e-26!GO:0019538;protein metabolic process;3.90810504465085e-26!GO:0043170;macromolecule metabolic process;1.15910026572247e-25!GO:0006397;mRNA processing;2.93466898990122e-25!GO:0006119;oxidative phosphorylation;3.83579509621885e-25!GO:0005740;mitochondrial envelope;3.91176306703027e-25!GO:0003735;structural constituent of ribosome;5.74993089342041e-25!GO:0031966;mitochondrial membrane;1.08087411300512e-24!GO:0016192;vesicle-mediated transport;2.99729024789831e-24!GO:0006412;translation;3.67945326862323e-24!GO:0006886;intracellular protein transport;5.45084006196703e-24!GO:0044260;cellular macromolecule metabolic process;2.77475187829262e-23!GO:0044267;cellular protein metabolic process;1.38405783773712e-22!GO:0005634;nucleus;2.98692715893205e-22!GO:0019866;organelle inner membrane;5.42972053451767e-22!GO:0005743;mitochondrial inner membrane;1.37119577866692e-21!GO:0044455;mitochondrial membrane part;3.47878806325373e-21!GO:0033279;ribosomal subunit;2.63934189072635e-20!GO:0005681;spliceosome;1.41205147247409e-18!GO:0031981;nuclear lumen;2.61627452038272e-18!GO:0005746;mitochondrial respiratory chain;4.33312927218551e-18!GO:0065003;macromolecular complex assembly;4.50372229995338e-18!GO:0009058;biosynthetic process;4.50372229995338e-18!GO:0006996;organelle organization and biogenesis;2.06738086539683e-17!GO:0005794;Golgi apparatus;2.50497440993258e-17!GO:0031982;vesicle;4.69545057124649e-17!GO:0000166;nucleotide binding;5.13544020862756e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.15252111045039e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.31229004416548e-16!GO:0003954;NADH dehydrogenase activity;1.31229004416548e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.31229004416548e-16!GO:0009059;macromolecule biosynthetic process;1.79958699029761e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.9091813669444e-16!GO:0044249;cellular biosynthetic process;2.18272085632442e-16!GO:0031410;cytoplasmic vesicle;2.18888170466972e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.30578887245961e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;2.86120481020377e-16!GO:0016462;pyrophosphatase activity;2.86120481020377e-16!GO:0031980;mitochondrial lumen;9.29894525351728e-16!GO:0005759;mitochondrial matrix;9.29894525351728e-16!GO:0022607;cellular component assembly;1.01865451974668e-15!GO:0031988;membrane-bound vesicle;1.95877575364623e-15!GO:0006457;protein folding;4.89543077898686e-15!GO:0017111;nucleoside-triphosphatase activity;6.17761021709559e-15!GO:0006512;ubiquitin cycle;7.46508384589395e-15!GO:0016023;cytoplasmic membrane-bound vesicle;8.98847611259292e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.24129282676241e-14!GO:0045271;respiratory chain complex I;1.24129282676241e-14!GO:0005747;mitochondrial respiratory chain complex I;1.24129282676241e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.56509188296204e-14!GO:0042773;ATP synthesis coupled electron transport;1.56509188296204e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.64593920813085e-14!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.68722353350482e-14!GO:0022618;protein-RNA complex assembly;1.08255498653261e-13!GO:0043283;biopolymer metabolic process;1.50410991223665e-13!GO:0044445;cytosolic part;2.16666559062635e-13!GO:0045045;secretory pathway;3.9836877672386e-13!GO:0012505;endomembrane system;6.25211614512435e-13!GO:0032553;ribonucleotide binding;6.41335791990681e-13!GO:0032555;purine ribonucleotide binding;6.41335791990681e-13!GO:0048193;Golgi vesicle transport;1.65190188566117e-12!GO:0016874;ligase activity;2.38404631950258e-12!GO:0008135;translation factor activity, nucleic acid binding;5.16622124556466e-12!GO:0017076;purine nucleotide binding;5.49527155693522e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.13212426414862e-11!GO:0005654;nucleoplasm;1.27184476235522e-11!GO:0043228;non-membrane-bound organelle;1.53723507208207e-11!GO:0043232;intracellular non-membrane-bound organelle;1.53723507208207e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.34527733448426e-11!GO:0048770;pigment granule;2.58119918099097e-11!GO:0042470;melanosome;2.58119918099097e-11!GO:0019829;cation-transporting ATPase activity;2.9574104060784e-11!GO:0010467;gene expression;2.97397659742624e-11!GO:0043412;biopolymer modification;3.66588216176691e-11!GO:0043687;post-translational protein modification;6.27994727987341e-11!GO:0051082;unfolded protein binding;6.39830377361067e-11!GO:0003924;GTPase activity;9.20580645270849e-11!GO:0030135;coated vesicle;1.00018520781702e-10!GO:0015934;large ribosomal subunit;1.12566478968178e-10!GO:0015935;small ribosomal subunit;1.63934048168517e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.6532576418266e-10!GO:0006511;ubiquitin-dependent protein catabolic process;2.00908475936665e-10!GO:0006605;protein targeting;2.01250087310105e-10!GO:0006464;protein modification process;2.0274693305232e-10!GO:0006810;transport;2.47504067326821e-10!GO:0044451;nucleoplasm part;2.52373199953925e-10!GO:0000502;proteasome complex (sensu Eukaryota);2.57139857317647e-10!GO:0019941;modification-dependent protein catabolic process;2.93499803118031e-10!GO:0043632;modification-dependent macromolecule catabolic process;2.93499803118031e-10!GO:0044265;cellular macromolecule catabolic process;3.41657038978416e-10!GO:0044257;cellular protein catabolic process;3.74485389786533e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.29435375966073e-10!GO:0008565;protein transporter activity;6.29632819983523e-10!GO:0051186;cofactor metabolic process;6.77827888476734e-10!GO:0015986;ATP synthesis coupled proton transport;1.04357567987273e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.04357567987273e-09!GO:0005761;mitochondrial ribosome;1.12107507558873e-09!GO:0000313;organellar ribosome;1.12107507558873e-09!GO:0006413;translational initiation;1.42716624014342e-09!GO:0007264;small GTPase mediated signal transduction;1.81705713116746e-09!GO:0005525;GTP binding;3.81733382293716e-09!GO:0003743;translation initiation factor activity;3.87806832417162e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;5.14940268600782e-09!GO:0000375;RNA splicing, via transesterification reactions;5.14940268600782e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.14940268600782e-09!GO:0016604;nuclear body;1.12326867315194e-08!GO:0043005;neuron projection;1.2978667402093e-08!GO:0005768;endosome;1.30270537677316e-08!GO:0032940;secretion by cell;1.64208110460538e-08!GO:0043285;biopolymer catabolic process;1.95470801464042e-08!GO:0044248;cellular catabolic process;1.95470801464042e-08!GO:0006446;regulation of translational initiation;2.17874252360565e-08!GO:0006793;phosphorus metabolic process;2.33760543869506e-08!GO:0006796;phosphate metabolic process;2.33760543869506e-08!GO:0008639;small protein conjugating enzyme activity;2.90358064988191e-08!GO:0016607;nuclear speck;2.94452112961605e-08!GO:0030163;protein catabolic process;3.61679064923051e-08!GO:0046034;ATP metabolic process;3.85731327042423e-08!GO:0009060;aerobic respiration;4.0818302719858e-08!GO:0051234;establishment of localization;4.6211814439892e-08!GO:0006754;ATP biosynthetic process;4.91749701795326e-08!GO:0006753;nucleoside phosphate metabolic process;4.91749701795326e-08!GO:0004842;ubiquitin-protein ligase activity;5.22427922362228e-08!GO:0045333;cellular respiration;5.76937248511137e-08!GO:0044431;Golgi apparatus part;7.06047763457372e-08!GO:0008134;transcription factor binding;7.50290086203291e-08!GO:0015078;hydrogen ion transmembrane transporter activity;7.72039551947779e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.98711483449013e-08!GO:0009141;nucleoside triphosphate metabolic process;8.34734776079824e-08!GO:0051179;localization;8.34734776079824e-08!GO:0009057;macromolecule catabolic process;1.00001565240307e-07!GO:0005083;small GTPase regulator activity;1.05140894483469e-07!GO:0019787;small conjugating protein ligase activity;1.17650647415901e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.20784496961643e-07!GO:0007399;nervous system development;1.22348342227746e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.60001011352498e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.67310533404451e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.67310533404451e-07!GO:0032561;guanyl ribonucleotide binding;1.74033120358408e-07!GO:0019001;guanyl nucleotide binding;1.74033120358408e-07!GO:0006732;coenzyme metabolic process;1.95744466749309e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.02062846702319e-07!GO:0015631;tubulin binding;2.14917868236102e-07!GO:0032559;adenyl ribonucleotide binding;2.14917868236102e-07!GO:0005783;endoplasmic reticulum;2.32763990288296e-07!GO:0019717;synaptosome;2.99042724623206e-07!GO:0030136;clathrin-coated vesicle;3.23228216161065e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.5992375784917e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.5992375784917e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.79633367757069e-07!GO:0006163;purine nucleotide metabolic process;3.84050429155766e-07!GO:0030695;GTPase regulator activity;4.08181460325513e-07!GO:0016044;membrane organization and biogenesis;4.15998876424704e-07!GO:0008092;cytoskeletal protein binding;4.45731719654141e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.45731719654141e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.45731719654141e-07!GO:0015630;microtubule cytoskeleton;4.45752073525502e-07!GO:0009150;purine ribonucleotide metabolic process;4.46213863392554e-07!GO:0006461;protein complex assembly;4.49907210516031e-07!GO:0006164;purine nucleotide biosynthetic process;4.58539414644376e-07!GO:0009152;purine ribonucleotide biosynthetic process;5.09648021818844e-07!GO:0005524;ATP binding;5.70590910554818e-07!GO:0005730;nucleolus;7.82016004753656e-07!GO:0009259;ribonucleotide metabolic process;8.10651700826884e-07!GO:0030554;adenyl nucleotide binding;1.29887598858124e-06!GO:0009055;electron carrier activity;1.39242083175685e-06!GO:0016310;phosphorylation;1.71745161616615e-06!GO:0048475;coated membrane;1.72743714631957e-06!GO:0030117;membrane coat;1.72743714631957e-06!GO:0008287;protein serine/threonine phosphatase complex;1.73569901916309e-06!GO:0009260;ribonucleotide biosynthetic process;2.04283538193243e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.16839652285738e-06!GO:0048471;perinuclear region of cytoplasm;2.16964311833485e-06!GO:0006913;nucleocytoplasmic transport;2.69296751486074e-06!GO:0031965;nuclear membrane;2.73780255435018e-06!GO:0045259;proton-transporting ATP synthase complex;3.23088688627828e-06!GO:0007010;cytoskeleton organization and biogenesis;3.31816957984959e-06!GO:0051169;nuclear transport;3.56015270608146e-06!GO:0000139;Golgi membrane;4.24056530846653e-06!GO:0016881;acid-amino acid ligase activity;4.31423016381735e-06!GO:0044440;endosomal part;4.34083937998437e-06!GO:0010008;endosome membrane;4.34083937998437e-06!GO:0006099;tricarboxylic acid cycle;4.47483423557561e-06!GO:0046356;acetyl-CoA catabolic process;4.47483423557561e-06!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.38910012875658e-06!GO:0009109;coenzyme catabolic process;8.70060349360495e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;9.05677794159661e-06!GO:0015399;primary active transmembrane transporter activity;9.05677794159661e-06!GO:0005635;nuclear envelope;1.10829516095029e-05!GO:0030425;dendrite;1.12820283231706e-05!GO:0005874;microtubule;1.27494569779582e-05!GO:0022890;inorganic cation transmembrane transporter activity;1.42730837887129e-05!GO:0016887;ATPase activity;1.42730837887129e-05!GO:0042623;ATPase activity, coupled;1.6773182124975e-05!GO:0006084;acetyl-CoA metabolic process;1.73536139683899e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.78608667115237e-05!GO:0030120;vesicle coat;1.93977951298048e-05!GO:0030662;coated vesicle membrane;1.93977951298048e-05!GO:0019226;transmission of nerve impulse;1.99758941904062e-05!GO:0000245;spliceosome assembly;2.04901223788147e-05!GO:0032446;protein modification by small protein conjugation;2.26456358623481e-05!GO:0051187;cofactor catabolic process;3.1276508488543e-05!GO:0016567;protein ubiquitination;3.45145761533899e-05!GO:0051188;cofactor biosynthetic process;3.73886120085376e-05!GO:0017038;protein import;3.79392813326251e-05!GO:0005798;Golgi-associated vesicle;3.82950086813896e-05!GO:0006888;ER to Golgi vesicle-mediated transport;4.09608710519406e-05!GO:0005770;late endosome;4.78123430849564e-05!GO:0008017;microtubule binding;5.73438768721586e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.38297689305849e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.67209548282985e-05!GO:0005643;nuclear pore;7.0938562815401e-05!GO:0008021;synaptic vesicle;9.56735271973692e-05!GO:0030036;actin cytoskeleton organization and biogenesis;9.69668796896554e-05!GO:0006403;RNA localization;9.8258289599777e-05!GO:0043492;ATPase activity, coupled to movement of substances;9.85224507937339e-05!GO:0005769;early endosome;9.85463437367869e-05!GO:0009056;catabolic process;9.85463437367869e-05!GO:0050657;nucleic acid transport;0.000115995245877913!GO:0051236;establishment of RNA localization;0.000115995245877913!GO:0050658;RNA transport;0.000115995245877913!GO:0044432;endoplasmic reticulum part;0.000120409660665252!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000131193829970057!GO:0030532;small nuclear ribonucleoprotein complex;0.000134735758105798!GO:0006752;group transfer coenzyme metabolic process;0.000149599924409936!GO:0019899;enzyme binding;0.000167816745704129!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000171116868602841!GO:0005905;coated pit;0.000181067982501282!GO:0044453;nuclear membrane part;0.000185912331155924!GO:0006613;cotranslational protein targeting to membrane;0.000216195624799279!GO:0048489;synaptic vesicle transport;0.000220733617359108!GO:0000151;ubiquitin ligase complex;0.000221079526946074!GO:0008654;phospholipid biosynthetic process;0.00024591293503629!GO:0003712;transcription cofactor activity;0.000258447903378579!GO:0030133;transport vesicle;0.000276230517304552!GO:0031072;heat shock protein binding;0.000293349975036378!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000306877830450734!GO:0007269;neurotransmitter secretion;0.000327407374486259!GO:0009108;coenzyme biosynthetic process;0.000333237087328492!GO:0007268;synaptic transmission;0.0003439800326222!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000387118644199708!GO:0030029;actin filament-based process;0.000427060463064077!GO:0005789;endoplasmic reticulum membrane;0.000443449852882274!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000450397229336283!GO:0004812;aminoacyl-tRNA ligase activity;0.000450397229336283!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000450397229336283!GO:0008047;enzyme activator activity;0.000451748719807523!GO:0006897;endocytosis;0.000470513220759998!GO:0010324;membrane invagination;0.000470513220759998!GO:0007242;intracellular signaling cascade;0.000474897328760615!GO:0005741;mitochondrial outer membrane;0.000489004211898511!GO:0000159;protein phosphatase type 2A complex;0.000489051390323805!GO:0065002;intracellular protein transport across a membrane;0.000506834368905838!GO:0031252;leading edge;0.000509438055359132!GO:0006259;DNA metabolic process;0.000545538140241596!GO:0042254;ribosome biogenesis and assembly;0.000548002167713716!GO:0003697;single-stranded DNA binding;0.000549026433734049!GO:0051087;chaperone binding;0.000575134501964716!GO:0008601;protein phosphatase type 2A regulator activity;0.000588783866819881!GO:0003724;RNA helicase activity;0.000594029611358026!GO:0051128;regulation of cellular component organization and biogenesis;0.000610925669714923!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000613067532285081!GO:0043566;structure-specific DNA binding;0.000647743804824311!GO:0043038;amino acid activation;0.000666068084509323!GO:0006418;tRNA aminoacylation for protein translation;0.000666068084509323!GO:0043039;tRNA aminoacylation;0.000666068084509323!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000691345589952979!GO:0022406;membrane docking;0.000721165019499674!GO:0048278;vesicle docking;0.000721165019499674!GO:0015980;energy derivation by oxidation of organic compounds;0.00073641875423688!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000842198628107937!GO:0006892;post-Golgi vesicle-mediated transport;0.000848754590271426!GO:0005096;GTPase activator activity;0.000856062333494024!GO:0007265;Ras protein signal transduction;0.000872672713496263!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000897377925050069!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000907057046403634!GO:0051246;regulation of protein metabolic process;0.000936908905500985!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000954567552308638!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000954567552308638!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000954567552308638!GO:0016070;RNA metabolic process;0.000956740654003919!GO:0006650;glycerophospholipid metabolic process;0.000964105724755051!GO:0019208;phosphatase regulator activity;0.000981528638897806!GO:0043623;cellular protein complex assembly;0.00103316616232267!GO:0006904;vesicle docking during exocytosis;0.00109795232192344!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00110816656995645!GO:0046467;membrane lipid biosynthetic process;0.00120190984294146!GO:0003729;mRNA binding;0.0012147285476538!GO:0045055;regulated secretory pathway;0.00134874474201329!GO:0051028;mRNA transport;0.00140068051639182!GO:0000314;organellar small ribosomal subunit;0.00147178887112766!GO:0005763;mitochondrial small ribosomal subunit;0.00147178887112766!GO:0030118;clathrin coat;0.00158379496469665!GO:0048523;negative regulation of cellular process;0.00163644255876725!GO:0045786;negative regulation of progression through cell cycle;0.00167623438755173!GO:0016564;transcription repressor activity;0.00179887280085109!GO:0006323;DNA packaging;0.00181354425936796!GO:0051056;regulation of small GTPase mediated signal transduction;0.00200023663994124!GO:0016197;endosome transport;0.00200023663994124!GO:0016301;kinase activity;0.00201746657361916!GO:0006414;translational elongation;0.00214414924567591!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00215539677819685!GO:0031968;organelle outer membrane;0.00220738060163101!GO:0048167;regulation of synaptic plasticity;0.00221059648746142!GO:0030027;lamellipodium;0.0022567888334271!GO:0001505;regulation of neurotransmitter levels;0.00239967805609165!GO:0009117;nucleotide metabolic process;0.00244031035972463!GO:0005813;centrosome;0.00248955722262622!GO:0048487;beta-tubulin binding;0.00254345270575577!GO:0019888;protein phosphatase regulator activity;0.00259707218270858!GO:0006606;protein import into nucleus;0.00266983380678544!GO:0005839;proteasome core complex (sensu Eukaryota);0.00275026802068535!GO:0005762;mitochondrial large ribosomal subunit;0.00275026802068535!GO:0000315;organellar large ribosomal subunit;0.00275026802068535!GO:0051170;nuclear import;0.00281320060747767!GO:0019867;outer membrane;0.00284192910070159!GO:0004386;helicase activity;0.00285743436636988!GO:0016568;chromatin modification;0.00287325237427364!GO:0008026;ATP-dependent helicase activity;0.00295157294575251!GO:0007019;microtubule depolymerization;0.00295595763814372!GO:0003779;actin binding;0.00299463240858929!GO:0005875;microtubule associated complex;0.00313482448641744!GO:0005773;vacuole;0.00328051751225504!GO:0030384;phosphoinositide metabolic process;0.00345724814883282!GO:0005048;signal sequence binding;0.00352676223029785!GO:0030427;site of polarized growth;0.00362872583801251!GO:0030426;growth cone;0.00380064347828418!GO:0016050;vesicle organization and biogenesis;0.00388864026873077!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00388864026873077!GO:0055083;monovalent inorganic anion homeostasis;0.00388864026873077!GO:0055064;chloride ion homeostasis;0.00388864026873077!GO:0030644;cellular chloride ion homeostasis;0.00388864026873077!GO:0005869;dynactin complex;0.00390212290636134!GO:0005793;ER-Golgi intermediate compartment;0.00390854234005715!GO:0003676;nucleic acid binding;0.00392673756357726!GO:0048500;signal recognition particle;0.00394867574411236!GO:0004674;protein serine/threonine kinase activity;0.00398417083171919!GO:0046930;pore complex;0.00401474741012332!GO:0046488;phosphatidylinositol metabolic process;0.00427599700803489!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00448106636644633!GO:0000902;cell morphogenesis;0.0045024708938323!GO:0032989;cellular structure morphogenesis;0.0045024708938323!GO:0006607;NLS-bearing substrate import into nucleus;0.0045732396726645!GO:0050803;regulation of synapse structure and activity;0.00459330095445087!GO:0006891;intra-Golgi vesicle-mediated transport;0.00476456160144091!GO:0006399;tRNA metabolic process;0.00476868453627071!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00478229249228157!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00478229249228157!GO:0030660;Golgi-associated vesicle membrane;0.00483695967428811!GO:0030658;transport vesicle membrane;0.00505953669229791!GO:0019902;phosphatase binding;0.00512783045521182!GO:0003714;transcription corepressor activity;0.00529616853365959!GO:0008180;signalosome;0.00534575308741716!GO:0004722;protein serine/threonine phosphatase activity;0.0054041696774166!GO:0006612;protein targeting to membrane;0.0054727730229873!GO:0043021;ribonucleoprotein binding;0.00564952451536744!GO:0004298;threonine endopeptidase activity;0.0057185124051453!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00583601462311392!GO:0031902;late endosome membrane;0.00604217508972812!GO:0051540;metal cluster binding;0.00620148030471248!GO:0051536;iron-sulfur cluster binding;0.00620148030471248!GO:0031901;early endosome membrane;0.00630806313386718!GO:0006818;hydrogen transport;0.00640961855613169!GO:0019887;protein kinase regulator activity;0.00655482371204282!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00655482371204282!GO:0008186;RNA-dependent ATPase activity;0.00655888558224621!GO:0050767;regulation of neurogenesis;0.00659800852696854!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00672599667056804!GO:0005815;microtubule organizing center;0.00674162941518257!GO:0051168;nuclear export;0.00708960681214336!GO:0008139;nuclear localization sequence binding;0.00742667456027285!GO:0012506;vesicle membrane;0.00742667456027285!GO:0046474;glycerophospholipid biosynthetic process;0.00745456545179346!GO:0005516;calmodulin binding;0.00768057660335878!GO:0004721;phosphoprotein phosphatase activity;0.00784931860282615!GO:0030424;axon;0.00789730410183054!GO:0051427;hormone receptor binding;0.00807597430797179!GO:0015992;proton transport;0.00807597430797179!GO:0016791;phosphoric monoester hydrolase activity;0.00811218952859402!GO:0016740;transferase activity;0.00814887829021876!GO:0016311;dephosphorylation;0.00830153889094439!GO:0030742;GTP-dependent protein binding;0.00851583709179806!GO:0016859;cis-trans isomerase activity;0.00871728060521275!GO:0006402;mRNA catabolic process;0.00876409387896893!GO:0001578;microtubule bundle formation;0.00878420012379203!GO:0031114;regulation of microtubule depolymerization;0.00920431295008901!GO:0007026;negative regulation of microtubule depolymerization;0.00920431295008901!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00924671333152279!GO:0007017;microtubule-based process;0.00931012276578719!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00936518378208159!GO:0045047;protein targeting to ER;0.00936518378208159!GO:0006091;generation of precursor metabolites and energy;0.00939168196918988!GO:0046578;regulation of Ras protein signal transduction;0.00984300724530284!GO:0030867;rough endoplasmic reticulum membrane;0.00984918937135278!GO:0046870;cadmium ion binding;0.00993719609057403!GO:0005938;cell cortex;0.0100169942301565!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0101762415324436!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0107283129496758!GO:0015002;heme-copper terminal oxidase activity;0.0107283129496758!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0107283129496758!GO:0004129;cytochrome-c oxidase activity;0.0107283129496758!GO:0007005;mitochondrion organization and biogenesis;0.0108542839402727!GO:0048519;negative regulation of biological process;0.0115213285800117!GO:0051920;peroxiredoxin activity;0.0117300371052376!GO:0019207;kinase regulator activity;0.0119571870121695!GO:0009165;nucleotide biosynthetic process;0.0119850471379838!GO:0043681;protein import into mitochondrion;0.0120760442798848!GO:0007049;cell cycle;0.0127074135828491!GO:0035035;histone acetyltransferase binding;0.0127074135828491!GO:0044433;cytoplasmic vesicle part;0.0128344247380954!GO:0030137;COPI-coated vesicle;0.0128495106889663!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0128634345133094!GO:0050811;GABA receptor binding;0.0134679893683685!GO:0035257;nuclear hormone receptor binding;0.0135730549518044!GO:0032011;ARF protein signal transduction;0.0135915911921276!GO:0032012;regulation of ARF protein signal transduction;0.0135915911921276!GO:0031124;mRNA 3'-end processing;0.0137491914304247!GO:0006383;transcription from RNA polymerase III promoter;0.0141129553423684!GO:0008312;7S RNA binding;0.0141293724620402!GO:0006364;rRNA processing;0.0142423896128063!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0143314167999187!GO:0005791;rough endoplasmic reticulum;0.0143835458705641!GO:0016363;nuclear matrix;0.0145359037355138!GO:0044456;synapse part;0.0147202931943068!GO:0016126;sterol biosynthetic process;0.0147545327775706!GO:0005885;Arp2/3 protein complex;0.0147545327775706!GO:0006470;protein amino acid dephosphorylation;0.0148307584101187!GO:0043209;myelin sheath;0.0152353443364452!GO:0003746;translation elongation factor activity;0.0153542499232121!GO:0006333;chromatin assembly or disassembly;0.0153542499232121!GO:0004004;ATP-dependent RNA helicase activity;0.0155852636306901!GO:0051726;regulation of cell cycle;0.0156429684223431!GO:0006974;response to DNA damage stimulus;0.0157823976647613!GO:0030054;cell junction;0.0161784870313374!GO:0016272;prefoldin complex;0.0161839313098056!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0163719787741824!GO:0004667;prostaglandin-D synthase activity;0.0163719787741824!GO:0050802;circadian sleep/wake cycle, sleep;0.0163719787741824!GO:0022410;circadian sleep/wake cycle process;0.0163719787741824!GO:0042749;regulation of circadian sleep/wake cycle;0.0163719787741824!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0163816896680804!GO:0005868;cytoplasmic dynein complex;0.0166188672920785!GO:0051252;regulation of RNA metabolic process;0.0168761879876642!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0169187513272001!GO:0003711;transcription elongation regulator activity;0.0171560923727532!GO:0050839;cell adhesion molecule binding;0.0183756939958236!GO:0006643;membrane lipid metabolic process;0.0187450293928356!GO:0000323;lytic vacuole;0.019035834519689!GO:0005764;lysosome;0.019035834519689!GO:0031371;ubiquitin conjugating enzyme complex;0.0192443548108198!GO:0005085;guanyl-nucleotide exchange factor activity;0.0197056876211193!GO:0016072;rRNA metabolic process;0.019961588403254!GO:0033673;negative regulation of kinase activity;0.0201202955225135!GO:0006469;negative regulation of protein kinase activity;0.0201202955225135!GO:0043069;negative regulation of programmed cell death;0.0201420791318357!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0203782654035057!GO:0007611;learning and/or memory;0.0209038500349478!GO:0003713;transcription coactivator activity;0.0215358528482843!GO:0008154;actin polymerization and/or depolymerization;0.0224013581769597!GO:0042026;protein refolding;0.0225532185896468!GO:0000074;regulation of progression through cell cycle;0.0226052444176266!GO:0000209;protein polyubiquitination;0.0233922483863348!GO:0043066;negative regulation of apoptosis;0.0235499250363691!GO:0004683;calmodulin-dependent protein kinase activity;0.0238738570964248!GO:0000062;acyl-CoA binding;0.0239654634650195!GO:0006916;anti-apoptosis;0.0240142781146059!GO:0051789;response to protein stimulus;0.0247141687988503!GO:0006986;response to unfolded protein;0.0247141687988503!GO:0007034;vacuolar transport;0.0260101438704591!GO:0003725;double-stranded RNA binding;0.0260800939134474!GO:0044448;cell cortex part;0.0264690531866126!GO:0000059;protein import into nucleus, docking;0.0264690531866126!GO:0030125;clathrin vesicle coat;0.0266154052480565!GO:0030665;clathrin coated vesicle membrane;0.0266154052480565!GO:0003690;double-stranded DNA binding;0.0269801677181374!GO:0008250;oligosaccharyl transferase complex;0.0269801677181374!GO:0030132;clathrin coat of coated pit;0.0275086886408795!GO:0006695;cholesterol biosynthetic process;0.0275914619631904!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0278549044916274!GO:0019198;transmembrane receptor protein phosphatase activity;0.0278549044916274!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0287487688360951!GO:0046489;phosphoinositide biosynthetic process;0.0288985618154778!GO:0019903;protein phosphatase binding;0.0291704941518632!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.030371508718751!GO:0006661;phosphatidylinositol biosynthetic process;0.0306229067405234!GO:0019894;kinesin binding;0.0309123883322233!GO:0043284;biopolymer biosynthetic process;0.0316624339831404!GO:0007272;ensheathment of neurons;0.0316853261299635!GO:0008366;axon ensheathment;0.0316853261299635!GO:0031123;RNA 3'-end processing;0.0321727377726696!GO:0030659;cytoplasmic vesicle membrane;0.0323510263367927!GO:0051348;negative regulation of transferase activity;0.0328911471449992!GO:0005100;Rho GTPase activator activity;0.0334273771918928!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0343006488706517!GO:0008286;insulin receptor signaling pathway;0.0357115116088301!GO:0016079;synaptic vesicle exocytosis;0.0359061246044549!GO:0005099;Ras GTPase activator activity;0.0364449873829849!GO:0030030;cell projection organization and biogenesis;0.0364449873829849!GO:0048858;cell projection morphogenesis;0.0364449873829849!GO:0032990;cell part morphogenesis;0.0364449873829849!GO:0005774;vacuolar membrane;0.0367130702119227!GO:0007006;mitochondrial membrane organization and biogenesis;0.0367494652778983!GO:0042670;retinal cone cell differentiation;0.0371382009753488!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0371382009753488!GO:0046549;retinal cone cell development;0.0371382009753488!GO:0030911;TPR domain binding;0.0371382009753488!GO:0043488;regulation of mRNA stability;0.0371382009753488!GO:0043487;regulation of RNA stability;0.0371382009753488!GO:0019904;protein domain specific binding;0.0372099536622298!GO:0008219;cell death;0.0372475058276527!GO:0016265;death;0.0372475058276527!GO:0030041;actin filament polymerization;0.0373012295595051!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.037738943231968!GO:0001508;regulation of action potential;0.037980913972016!GO:0043086;negative regulation of catalytic activity;0.0380974752878722!GO:0005832;chaperonin-containing T-complex;0.0382654768534653!GO:0051287;NAD binding;0.0384891669819926!GO:0051276;chromosome organization and biogenesis;0.0385589580914937!GO:0007266;Rho protein signal transduction;0.0385589580914937!GO:0006376;mRNA splice site selection;0.0385589580914937!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0385589580914937!GO:0008088;axon cargo transport;0.0393042457066413!GO:0030663;COPI coated vesicle membrane;0.0393042457066413!GO:0030126;COPI vesicle coat;0.0393042457066413!GO:0051539;4 iron, 4 sulfur cluster binding;0.0399496643424931!GO:0022008;neurogenesis;0.0401969672933998!GO:0051261;protein depolymerization;0.0406555755417763!GO:0008022;protein C-terminus binding;0.0407105521769937!GO:0019783;small conjugating protein-specific protease activity;0.040988543035333!GO:0005092;GDP-dissociation inhibitor activity;0.0414988923631313!GO:0008320;protein transmembrane transporter activity;0.0416521447393417!GO:0005684;U2-dependent spliceosome;0.0431888213401316!GO:0006595;polyamine metabolic process;0.0435272341369332!GO:0030127;COPII vesicle coat;0.0437878011164591!GO:0012507;ER to Golgi transport vesicle membrane;0.0437878011164591!GO:0030258;lipid modification;0.0438270000380672!GO:0005952;cAMP-dependent protein kinase complex;0.0441457805605911!GO:0008610;lipid biosynthetic process;0.0442193349791994!GO:0043087;regulation of GTPase activity;0.0444906644168551!GO:0006611;protein export from nucleus;0.0446608063839972!GO:0000287;magnesium ion binding;0.0447521992230579!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0451278419107068!GO:0035258;steroid hormone receptor binding;0.0459236604942972!GO:0006713;glucocorticoid catabolic process;0.0465160133411465!GO:0030880;RNA polymerase complex;0.0471779696874142!GO:0005784;translocon complex;0.047265048644058!GO:0006626;protein targeting to mitochondrion;0.0476237895575772!GO:0006644;phospholipid metabolic process;0.0482901817987095!GO:0032287;myelin maintenance in the peripheral nervous system;0.0482901817987095!GO:0032838;cell projection cytoplasm;0.0482901817987095!GO:0033081;regulation of T cell differentiation in the thymus;0.0482901817987095!GO:0043217;myelin maintenance;0.0482901817987095!GO:0060087;relaxation of vascular smooth muscle;0.0482901817987095!GO:0032839;dendrite cytoplasm;0.0482901817987095!GO:0045296;cadherin binding;0.048320424849507!GO:0006887;exocytosis;0.0483442247203539!GO:0030508;thiol-disulfide exchange intermediate activity;0.0488291631812187 | |||
|sample_id=10170 | |||
|sample_note= | |||
|sample_sex=female | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=medial frontal gyrus | |||
|top_motifs=REST:3.84545321499;DBP:3.81859156824;CUX2:3.7793412588;AHR_ARNT_ARNT2:3.56084025405;HOXA9_MEIS1:3.54329798001;ALX1:3.47064498332;FOXM1:3.42476012412;PRRX1,2:3.41505757918;MYFfamily:3.37601402099;NHLH1,2:3.31138488845;PAX4:2.96685078489;ZFP161:2.91108580876;ZBTB6:2.87918538548;PRDM1:2.81199649804;EGR1..3:2.79386506918;MTE{core}:2.77682656593;OCT4_SOX2{dimer}:2.75925709074;MED-1{core}:2.73950315323;MTF1:2.66162560826;RFX1:2.55906497362;ATF2:2.55595144715;NKX3-2:2.54836695308;PAX6:2.53704882334;ARID5B:2.51711921939;RREB1:2.47201295929;GATA4:2.40756016503;POU6F1:2.31533650987;JUN:2.23943651892;PAX5:2.10157755318;HOX{A4,D4}:2.05819196466;FOXQ1:2.02203921703;GTF2I:2.00232274179;POU1F1:1.9684342728;CDC5L:1.95181322628;POU5F1:1.92773051636;NKX2-3_NKX2-5:1.91480106264;MZF1:1.91064058507;KLF4:1.88292160786;POU3F1..4:1.77943793677;GFI1B:1.77924096884;NRF1:1.77844219955;BREu{core}:1.77318314822;RFX2..5_RFXANK_RFXAP:1.74933402428;TFAP2B:1.65569267537;TGIF1:1.62943810273;SOX17:1.61910026113;ESRRA:1.56640416679;HMGA1,2:1.54531047588;LEF1_TCF7_TCF7L1,2:1.53733454483;LMO2:1.53420316849;HBP1_HMGB_SSRP1_UBTF:1.53204223241;HIC1:1.5086737026;TFDP1:1.43117052173;ZNF384:1.40286977326;SOX{8,9,10}:1.39623667033;MAFB:1.38821003157;TEF:1.37883248782;SMAD1..7,9:1.35348444031;CRX:1.32502316108;SOX2:1.32230612668;HAND1,2:1.32008766359;SOX5:1.27914852739;MYOD1:1.27234317115;FOXL1:1.26853666982;PAX1,9:1.2281567727;MAZ:1.20697469555;NKX6-1,2:1.15859569857;IKZF2:1.1259012892;PATZ1:1.11023965359;NFIX:1.10932561014;RORA:1.08364480208;NFIL3:1.06061655733;FOXP1:1.02728617641;FOXD3:1.00685923878;PAX8:0.976406359485;NANOG:0.968329373062;XBP1:0.967803163;ZBTB16:0.966752879678;NR3C1:0.961172773526;ONECUT1,2:0.961013597722;CREB1:0.933086552606;BPTF:0.87548368837;FOX{F1,F2,J1}:0.864286670912;STAT1,3:0.823253320646;FOXP3:0.78581082845;ZEB1:0.768194374982;RBPJ:0.708032815631;ZNF143:0.694453936457;YY1:0.691282438175;TLX2:0.661287428503;GCM1,2:0.608062915781;MEF2{A,B,C,D}:0.527200387978;ADNP_IRX_SIX_ZHX:0.501372578105;SREBF1,2:0.485830846445;ATF4:0.464533597342;ATF5_CREB3:0.452762887444;UFEwm:0.422647277164;EP300:0.351704735503;LHX3,4:0.341818360415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.315491433711;PAX2:0.312710492346;EBF1:0.29316701014;HMX1:0.277215038224;GTF2A1,2:0.269257843915;IKZF1:0.263377663706;FOXN1:0.259902621237;GZF1:0.25598061686;GFI1:0.19915444842;ZIC1..3:0.182415381778;SPZ1:0.17762783964;TBX4,5:0.141384405882;ZNF238:0.105067249802;MYBL2:0.100170981369;FOX{D1,D2}:0.0785252493351;STAT2,4,6:0.0752305379739;AIRE:0.0643146015505;NFE2L1:0.0475261891059;EVI1:0.0135770632246;DMAP1_NCOR{1,2}_SMARC:0.00287150372035;AR:-0.00192741261789;TLX1..3_NFIC{dimer}:-0.0175547144445;IRF7:-0.0366585780576;NFE2L2:-0.0480377992673;PAX3,7:-0.0856404215727;SNAI1..3:-0.0947105875377;TOPORS:-0.114644505705;HOX{A6,A7,B6,B7}:-0.148258854638;ATF6:-0.16633624285;ZNF423:-0.171732411416;HSF1,2:-0.185885014837;PBX1:-0.232913737003;NFATC1..3:-0.304983624585;VSX1,2:-0.312079182473;NFY{A,B,C}:-0.316574364719;bHLH_family:-0.32433315914;NKX3-1:-0.329796389177;T:-0.343737233847;FOX{I1,J2}:-0.345739623996;SP1:-0.353072188934;CEBPA,B_DDIT3:-0.377699563458;NANOG{mouse}:-0.391333361959;PDX1:-0.406053955207;NFE2:-0.438755820768;GATA6:-0.453354851201;FOXA2:-0.476754150901;TFAP2{A,C}:-0.515823143766;SPI1:-0.537605526273;CDX1,2,4:-0.58342433059;IRF1,2:-0.646455645698;NR1H4:-0.710342109168;HNF1A:-0.784389347862;SPIB:-0.839064122796;HIF1A:-0.85806873001;FOSL2:-0.885427508033;BACH2:-0.898708493532;FOXO1,3,4:-0.962967957427;NR5A1,2:-0.991070309108;FOS_FOS{B,L1}_JUN{B,D}:-0.995841676502;RXRA_VDR{dimer}:-1.10365356633;ETS1,2:-1.10903787911;HNF4A_NR2F1,2:-1.11722433201;XCPE1{core}:-1.13116983307;RXR{A,B,G}:-1.1544164509;TP53:-1.16874206194;TEAD1:-1.17398713528;RUNX1..3:-1.21156580222;TAL1_TCF{3,4,12}:-1.22680017336;TBP:-1.25666201714;GLI1..3:-1.25843169835;NFKB1_REL_RELA:-1.27259723609;HOX{A5,B5}:-1.3076611939;POU2F1..3:-1.31016558352;E2F1..5:-1.31084729288;NKX2-2,8:-1.33057849262;PITX1..3:-1.34237949017;ELK1,4_GABP{A,B1}:-1.35528336448;HLF:-1.42266887068;MYB:-1.45484172509;ELF1,2,4:-1.47359357078;ZNF148:-1.48354594408;HES1:-1.57287923997;ESR1:-1.59387718262;ALX4:-1.6272846532;TFAP4:-1.64691864737;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.72423113693;PPARG:-1.74167165186;STAT5{A,B}:-1.80621582645;SRF:-1.87193073221;TFCP2:-1.89487464858;NKX2-1,4:-1.9695746773;EN1,2:-2.37037036744;NR6A1:-2.57077146356 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10170-103B8;search_select_hide=table117:FF:10170-103B8 | |||
}} | }} |
Latest revision as of 12:24, 3 June 2020
Name: | medial frontal gyrus - adult, donor10196 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs13796 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13796
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13796
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0852 |
10 | 10 | 0.0581 |
100 | 100 | 0.329 |
101 | 101 | 0.483 |
102 | 102 | 0.839 |
103 | 103 | 0.352 |
104 | 104 | 0.109 |
105 | 105 | 0.0509 |
106 | 106 | 0.0277 |
107 | 107 | 0.0626 |
108 | 108 | 0.997 |
109 | 109 | 0.00288 |
11 | 11 | 0.0195 |
110 | 110 | 0.054 |
111 | 111 | 0.35 |
112 | 112 | 0.653 |
113 | 113 | 0.438 |
114 | 114 | 0.387 |
115 | 115 | 0.999 |
116 | 116 | 0.091 |
117 | 117 | 0.00835 |
118 | 118 | 0.123 |
119 | 119 | 0.273 |
12 | 12 | 0.41 |
120 | 120 | 0.313 |
121 | 121 | 0.167 |
122 | 122 | 0.981 |
123 | 123 | 0.619 |
124 | 124 | 0.00699 |
125 | 125 | 0.428 |
126 | 126 | 0.0105 |
127 | 127 | 0.588 |
128 | 128 | 0.218 |
129 | 129 | 0.595 |
13 | 13 | 3.05299e-4 |
130 | 130 | 0.0537 |
131 | 131 | 0.105 |
132 | 132 | 0.839 |
133 | 133 | 0.00315 |
134 | 134 | 0.67 |
135 | 135 | 0.164 |
136 | 136 | 4.88254e-4 |
137 | 137 | 0.711 |
138 | 138 | 0.779 |
139 | 139 | 0.164 |
14 | 14 | 0.744 |
140 | 140 | 0.47 |
141 | 141 | 0.94 |
142 | 142 | 0.666 |
143 | 143 | 0.0982 |
144 | 144 | 0.917 |
145 | 145 | 0.0814 |
146 | 146 | 0.244 |
147 | 147 | 0.451 |
148 | 148 | 0.448 |
149 | 149 | 0.221 |
15 | 15 | 0.116 |
150 | 150 | 0.122 |
151 | 151 | 0.634 |
152 | 152 | 0.0589 |
153 | 153 | 0.896 |
154 | 154 | 0.442 |
155 | 155 | 0.766 |
156 | 156 | 0.309 |
157 | 157 | 0.425 |
158 | 158 | 0.384 |
159 | 159 | 0.0727 |
16 | 16 | 0.0594 |
160 | 160 | 0.268 |
161 | 161 | 0.156 |
162 | 162 | 0.657 |
163 | 163 | 0.687 |
164 | 164 | 0.0168 |
165 | 165 | 0.031 |
166 | 166 | 0.935 |
167 | 167 | 0.821 |
168 | 168 | 0.352 |
169 | 169 | 0.0125 |
17 | 17 | 0.154 |
18 | 18 | 0.23 |
19 | 19 | 0.161 |
2 | 2 | 0.688 |
20 | 20 | 0.101 |
21 | 21 | 0.0863 |
22 | 22 | 0.139 |
23 | 23 | 0.442 |
24 | 24 | 0.0319 |
25 | 25 | 0.506 |
26 | 26 | 3.10475e-5 |
27 | 27 | 0.956 |
28 | 28 | 0.619 |
29 | 29 | 0.0147 |
3 | 3 | 0.0493 |
30 | 30 | 0.967 |
31 | 31 | 0.895 |
32 | 32 | 0.0314 |
33 | 33 | 0.0566 |
34 | 34 | 0.458 |
35 | 35 | 0.871 |
36 | 36 | 0.265 |
37 | 37 | 0.0468 |
38 | 38 | 0.347 |
39 | 39 | 0.156 |
4 | 4 | 0.99 |
40 | 40 | 0.0353 |
41 | 41 | 0.393 |
42 | 42 | 0.25 |
43 | 43 | 0.0992 |
44 | 44 | 0.302 |
45 | 45 | 0.579 |
46 | 46 | 0.105 |
47 | 47 | 0.0867 |
48 | 48 | 0.044 |
49 | 49 | 0.214 |
5 | 5 | 0.71 |
50 | 50 | 0.149 |
51 | 51 | 0.501 |
52 | 52 | 0.354 |
53 | 53 | 0.929 |
54 | 54 | 0.406 |
55 | 55 | 0.392 |
56 | 56 | 0.498 |
57 | 57 | 0.449 |
58 | 58 | 0.423 |
59 | 59 | 0.0528 |
6 | 6 | 0.828 |
60 | 60 | 0.0456 |
61 | 61 | 0.0323 |
62 | 62 | 0.293 |
63 | 63 | 0.104 |
64 | 64 | 0.364 |
65 | 65 | 0.305 |
66 | 66 | 0.14 |
67 | 67 | 0.374 |
68 | 68 | 0.233 |
69 | 69 | 0.388 |
7 | 7 | 0.0388 |
70 | 70 | 0.0616 |
71 | 71 | 0.00984 |
72 | 72 | 0.389 |
73 | 73 | 0.022 |
74 | 74 | 0.883 |
75 | 75 | 0.0401 |
76 | 76 | 0.519 |
77 | 77 | 0.136 |
78 | 78 | 0.00159 |
79 | 79 | 0.253 |
8 | 8 | 0.0928 |
80 | 80 | 0.492 |
81 | 81 | 0.952 |
82 | 82 | 0.901 |
83 | 83 | 0.0319 |
84 | 84 | 0.557 |
85 | 85 | 0.368 |
86 | 86 | 0.187 |
87 | 87 | 1.72279e-4 |
88 | 88 | 0.878 |
89 | 89 | 0.794 |
9 | 9 | 0.287 |
90 | 90 | 0.411 |
91 | 91 | 0.825 |
92 | 92 | 0.809 |
93 | 93 | 0.746 |
94 | 94 | 0.246 |
95 | 95 | 0.0131 |
96 | 96 | 0.87 |
97 | 97 | 0.577 |
98 | 98 | 0.379 |
99 | 99 | 0.598 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13796
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
FF:0000004 tissue sample
FF:0000210 human sample
UBERON:0002702 middle frontal gyrus
UBERON:0007023 adult organism
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000200 (gyrus)
0001870 (frontal cortex)
0000956 (cerebral cortex)
0000479 (tissue)
0002702 (middle frontal gyrus)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000004 (tissue sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)