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{{f5samples
{{f5samples
|F5samples=
|DRA_sample_Accession=CAGE@SAMD00005769
|ancestors_in_anatomy_facet=UBERON:0000015,UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000077,UBERON:0000119,UBERON:0000353,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001009,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001280,UBERON:0001281,UBERON:0001434,UBERON:0001474,UBERON:0001555,UBERON:0001981,UBERON:0002049,UBERON:0002050,UBERON:0002100,UBERON:0002107,UBERON:0002193,UBERON:0002204,UBERON:0002330,UBERON:0002365,UBERON:0002368,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002417,UBERON:0002423,UBERON:0002530,UBERON:0002532,UBERON:0003081,UBERON:0003104,UBERON:0003497,UBERON:0003513,UBERON:0003835,UBERON:0003894,UBERON:0003909,UBERON:0003914,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004535,UBERON:0004537,UBERON:0004647,UBERON:0004765,UBERON:0004872,UBERON:0004921,UBERON:0005057,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0005911,UBERON:0006235,UBERON:0006925,UBERON:0006965,UBERON:0007026,UBERON:0007500,UBERON:0007798,UBERON:0008835,UBERON:0008836,UBERON:0009142
|accession_numbers=CAGE;DRX007903;DRR008775;DRZ000200;DRZ001585;DRZ011550;DRZ012935
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000040,CL:0000048,CL:0000049,CL:0000063,CL:0000091,CL:0000134,CL:0000144,CL:0000219,CL:0000235,CL:0000255,CL:0000548,CL:0000557,CL:0000559,CL:0000566,CL:0000576,CL:0000723,CL:0000738,CL:0000763,CL:0000766,CL:0000837,CL:0000839,CL:0000864,CL:0000988,CL:0001012,CL:0002009,CL:0002031,CL:0002032,CL:0002087,CL:0002194,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_disease_facet=DOID:2237,DOID:3118,DOID:4,DOID:409,DOID:7,DOID:77
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000057,CL:0000632
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:3119,DOID:3350,DOID:3571
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100224,FF:0103513,FF:0103519
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.67!46.12!ZBED1;;chr4:174451370..174451387,-!p1@HAND2!1.65!43.96!HAND2;;chr1:197886461..197886558,+!p1@LHX9!1.47!28.46!LHX9;;chr18:53068911..53068935,-!p4@TCF4!1.41!28.10!TCF4;;chr18:19749386..19749404,+!p2@GATA6!1.40!33.87!GATA6;;chr16:86544113..86544145,+!p1@FOXF1!1.39!29.18!FOXF1;;chr21:38071430..38071456,+!p1@SIM2!1.39!23.78!SIM2;;chr8:11561684..11561751,+!p1@GATA4!1.38!23.06!GATA4;;chr8:106330656..106330684,+!p1@ZFPM2!1.35!55.49!ZFPM2;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!99.80!CREB3L1;;chr17:1959369..1959388,+!p2@HIC1!1.32!51.16!HIC1;;chr18:19749541..19749557,+!p1@GATA6!1.26!52.96!GATA6;;chr4:174450089..174450153,-!p2@HAND2!1.26!17.29!HAND2;;chr12:80085061..80085119,-!p6@PAWR!1.24!26.30!PAWR;;chr11:125034640..125034655,+!p1@PKNOX2!1.16!13.33!PKNOX2;;chr10:64576105..64576133,-!p1@EGR2!1.15!26.66!EGR2;;chr2:46524537..46524553,+!p1@EPAS1!1.14!1252.40!EPAS1;;chr2:66662281..66662308,+!p1@MEIS1!1.14!43.96!MEIS1;;chr20:50179368..50179392,-!p2@NFATC2!1.13!16.21!NFATC2;;chr6:134210243..134210257,+!p1@TCF21!1.09!11.17!TCF21;;chr7:35293685..35293718,-!p1@TBX20!1.09!11.17!TBX20;;chr10:63809106..63809127,+!p1@ARID5B!1.07!147.00!ARID5B;;chr7:1577899..1577943,+!p3@MAFK!1.07!10.81!MAFK;;chr4:174451350..174451363,-!p3@HAND2!1.06!10.45!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!1.04!10.09!PRRX1;;chr2:66662396..66662407,+!p4@MEIS1!1.03!9.73!MEIS1;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.17!ZBTB38;;chr3:178789522..178789564,-!p2@ZMAT3!0.99!65.93!ZMAT3;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.13!CREB3L1;;chr8:55370487..55370503,+!p1@SOX17!0.98!8.65!SOX17;;chr15:96869255..96869291,+!p6@NR2F2!0.97!15.49!NR2F2;;chr8:106330696..106330719,+!p2@ZFPM2!0.96!10.45!ZFPM2;;chr7:44143925..44143970,+!p1@AEBP1!0.95!182.31!AEBP1;;chr5:139492456..139492489,+!p7@PURA!0.95!7.93!PURA;;chr12:80085120..80085156,-!p14@PAWR!0.95!7.93!PAWR;;chr16:86600426..86600441,+!p1@FOXC2!0.93!19.10!FOXC2;;chr7:44143978..44143989,+!p2@AEBP1!0.92!13.69!AEBP1;;chr12:26277817..26277863,-!p2@BHLHE41!0.91!9.73!BHLHE41;;chr5:72744445..72744466,-!p2@FOXD1!0.90!11.89!FOXD1;;chr2:121493425..121493474,+!p1@GLI2!0.89!15.49!GLI2;;chr9:100615499..100615519,+!p1@FOXE1!0.89!6.85!FOXE1;;chr15:96874012..96874042,+!p2@NR2F2!0.88!63.05!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.86!11.53!ZFP106;;chr8:72756267..72756296,-!p4@MSC!0.86!9.37!MSC;;chr8:72756063..72756125,-!p1@MSC!0.85!12.97!MSC;;chr8:72756667..72756736,-!p2@MSC!0.85!9.73!MSC;;chr5:142780189..142780223,-!p6@NR3C1!0.85!6.13!NR3C1;;chr7:150945754..150945789,-!p2@SMARCD3!0.84!19.10!SMARCD3;;chr3:141121847..141121868,+!p5@ZBTB38!0.84!9.37!ZBTB38;;chr19:42636586..42636607,-!p1@POU2F2!0.83!16.93!POU2F2;;chr12:66218255..66218304,+!p3@HMGA2!0.83!16.21!HMGA2;;chr12:54402745..54402788,+!p1@HOXC8!0.83!5.76!HOXC8;;chr10:63809013..63809041,+!p3@ARID5B!0.81!32.79!ARID5B;;chr2:66662510..66662521,+!p6@MEIS1!0.81!5.40!MEIS1;;chr16:86600870..86600921,+!p2@FOXC2!0.81!5.40!FOXC2;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.40!GATA6;;chr5:142780237..142780261,-!p7@NR3C1!0.81!5.40!NR3C1;;chr21:36260295..36260310,-!p3@RUNX1!0.80!9.01!RUNX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.78!5.04!HOXC5;;chr20:48599506..48599526,+!p1@SNAI1!0.77!34.23!SNAI1;;chr2:66662249..66662267,+!p2@MEIS1!0.77!20.54!MEIS1;;chr8:72756213..72756243,-!p5@MSC!0.77!6.49!MSC;;chr6:144329384..144329405,-!p1@PLAGL1!0.76!60.89!PLAGL1;;chr2:208030647..208030689,-!p1@KLF7!0.76!43.60!KLF7;;chr9:102584159..102584174,+!p2@NR4A3!0.76!9.01!NR4A3;;chr21:36260343..36260402,-!p6@RUNX1!0.76!7.93!RUNX1;;chr1:23885981..23886002,-!p1@ID3!0.75!900.39!ID3;;chr19:47523058..47523114,+!p1@NPAS1!0.75!4.68!NPAS1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.74!44.32!PPP1R13L;;chr10:63853436..63853442,+!p4@ARID5B!0.74!26.66!ARID5B;;chr10:63809077..63809089,+!p5@ARID5B!0.74!10.45!ARID5B;;chr11:12696071..12696086,+!p3@TEAD1!0.74!6.13!TEAD1;;chr15:96869222..96869251,+!p18@NR2F2!0.74!5.40!NR2F2;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.04!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!0.73!61.97!NR4A1;;chr2:176994408..176994492,+!p1@HOXD8!0.73!4.32!HOXD8;;chr15:60884706..60884743,-!p1@RORA!0.72!24.50!RORA;;chr2:239756671..239756732,+!p1@TWIST2!0.72!15.13!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.72!6.85!HMGA2;;chr7:137686791..137686821,-!p1@CREB3L2!0.71!136.19!CREB3L2;;chr21:36260980..36261011,-!p1@RUNX1!0.71!133.67!RUNX1;;chr5:92918894..92918912,+!p2@NR2F1!0.71!14.77!NR2F1;;chr1:170632285..170632309,+!p1@PRRX1!0.70!4.68!PRRX1;;chr17:46126136..46126152,+!p1@NFE2L1!0.69!231.31!NFE2L1;;chr2:101436564..101436647,+!p1@NPAS2!0.69!90.07!NPAS2;;chr12:66218598..66218645,+!p2@HMGA2!0.69!20.18!HMGA2;;chr3:71630980..71631110,-!p3@FOXP1!0.69!15.13!FOXP1;;chr17:46621937..46621966,-!p2@HOXB2!0.69!11.53!HOXB2;;chr7:137686763..137686784,-!p5@CREB3L2!0.69!7.21!CREB3L2;;chr20:39946361..39946379,-!p2@ZHX3!0.68!12.61!ZHX3;;chr18:19749517..19749531,+!p3@GATA6!0.68!7.21!GATA6;;chr2:239756739..239756755,+!p2@TWIST2!0.68!6.85!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!0.68!5.40!PRRX1;;chr7:44143997..44144008,+!p3@AEBP1!0.68!5.04!AEBP1;;chr2:121493492..121493537,+!p2@GLI2!0.67!6.49!GLI2;;chr10:63809090..63809097,+!p7@ARID5B!0.67!5.40!ARID5B;;chr2:66662895..66662907,+!p3@MEIS1!0.67!4.68!MEIS1;;chr8:49833978..49833996,-!p1@SNAI2!0.66!86.11!SNAI2;;chr3:71114066..71114114,-!p1@FOXP1!0.66!85.03!FOXP1;;chr5:72744594..72744609,-!p1@FOXD1!0.66!18.74!FOXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.66!18.01!ZBTB20;;chr3:5021268..5021282,+!p4@BHLHE40!0.66!7.93!BHLHE40;;chr15:96874145..96874166,+!p7@NR2F2!0.66!7.57!NR2F2;;chr18:19749504..19749515,+!p5@GATA6!0.66!3.60!GATA6;;chr3:101575889..101575903,+!p3@NFKBIZ!0.66!3.60!NFKBIZ;;chr12:54402790..54402805,+!p2@HOXC8!0.66!3.60!HOXC8;;chr20:30433396..30433414,-!p1@FOXS1!0.66!3.60!FOXS1;;chr8:49833948..49833973,-!p2@SNAI2!0.65!25.58!SNAI2;;chr6:144289132..144289134,-!p3@PLAGL1!0.65!9.01!PLAGL1;;chr19:47922750..47922795,-!p1@MEIS3!0.65!6.13!MEIS3;;chr2:238536207..238536290,+!p2@LRRFIP1!0.64!38.91!LRRFIP1;;chr17:1958388..1958404,+!p1@HIC1!0.64!25.22!HIC1;;chr12:27485762..27485776,+!p3@ARNTL2!0.64!10.09!ARNTL2;;chr7:137563905..137563916,-!p11@CREB3L2!0.64!5.04!CREB3L2;;chr9:4300050..4300118,-!p1@GLIS3!0.63!24.86!GLIS3;;chr12:27485823..27485868,+!p2@ARNTL2!0.63!15.49!ARNTL2;;chr2:19558373..19558392,-!p1@OSR1!0.63!10.09!OSR1;;chr15:60884747..60884774,-!p3@RORA!0.63!9.01!RORA;;chr7:137564014..137564042,-!p8@CREB3L2!0.63!6.13!CREB3L2;;chr7:97840743..97840786,+!p1@BHLHA15!0.63!3.24!BHLHA15;;chr8:72756194..72756208,-!p9@MSC!0.63!3.24!MSC;;chr2:66662797..66662818,+!p10@MEIS1!0.63!3.24!MEIS1;;chr1:170632723..170632739,+!p8@PRRX1!0.63!3.24!PRRX1;;chr11:125034586..125034604,+!p3@PKNOX2!0.63!3.24!PKNOX2;;chr16:31076332..31076388,-!p3@ZNF668!0.63!3.24!ZNF668;;chr10:63809134..63809145,+!p6@ARID5B!0.62!8.29!ARID5B;;chr12:80084279..80084293,-!p8@PAWR!0.62!5.76!PAWR;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.41!ZBTB38;;chr11:12696002..12696022,+!p2@TEAD1!0.61!8.65!TEAD1;;chr20:3388579..3388619,-!p3@C20orf194!0.61!8.29!C20orf194;;chr12:115121962..115121987,-!p1@TBX3!0.60!30.27!TBX3;;chr18:53255415..53255491,-!p1@TCF4!0.60!30.27!TCF4;;chr2:85360499..85360598,+!p1@TCF7L1!0.60!19.82!TCF7L1;;chr15:96874244..96874259,+!p5@NR2F2!0.60!8.29!NR2F2;;chr1:200379104..200379128,-!p2@ZNF281!0.60!8.29!ZNF281;;chr5:139487608..139487663,+!p3@PURA!0.60!7.21!PURA;;chr3:71630690..71630750,-!p11@FOXP1!0.60!5.40!FOXP1;;chr15:96869292..96869320,+!p15@NR2F2!0.60!4.68!NR2F2;;chr5:137804357..137804390,+!p4@EGR1!0.60!3.60!EGR1;;chr12:77459306..77459365,-!p1@E2F7!0.59!44.32!E2F7;;chr15:96873984..96873999,+!p3@NR2F2!0.59!25.58!NR2F2;;chr5:321810..321877,+!p1@AHRR!0.59!10.81!AHRR;;chr3:178789622..178789633,-!p3@ZMAT3!0.59!6.13!ZMAT3;;chr17:7382834..7382855,-!p6@ZBTB4!0.59!5.40!ZBTB4;;chr17:59477403..59477414,+!p4@TBX2!0.59!2.88!TBX2;;chr8:72756380..72756427,-!p8@MSC!0.59!2.88!MSC;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.59!2.88!HOXC5;;chr19:46801639..46801699,+!p1@HIF3A!0.59!2.88!HIF3A;;chr1:170632250..170632277,+!p7@PRRX1!0.59!2.88!PRRX1;;chr3:141087339..141087387,+!p2@ZBTB38!0.58!34.95!ZBTB38;;chr14:62162285..62162296,+!p3@HIF1A!0.58!17.65!HIF1A;;chr21:30671690..30671762,+!p2@BACH1!0.58!11.17!BACH1;;chr17:59477233..59477263,+!p1@TBX2!0.58!10.09!TBX2;;chr2:113993052..113993097,-!p2@PAX8!0.58!7.21!PAX8;;chr15:96874216..96874236,+!p13@NR2F2!0.58!4.68!NR2F2;;chr19:31840130..31840160,-!p2@TSHZ3!0.58!4.68!TSHZ3;;chr2:46612334..46612349,+!p6@EPAS1!0.58!3.96!EPAS1;;chr3:178789566..178789620,-!p1@ZMAT3!0.57!59.81!ZMAT3;;chr10:77161504..77161530,-!p1@ZNF503!0.57!44.68!ZNF503;;chr2:46524506..46524514,+!p5@EPAS1!0.57!5.76!EPAS1;;chr20:50721803..50721857,-!p2@ZFP64!0.57!4.68!ZFP64;;chr2:200322654..200322707,-!p2@SATB2!0.57!4.32!SATB2;;chr16:73093174..73093209,-!p3@ZFHX3!0.57!3.96!ZFHX3;;chr4:57774042..57774114,+!p1@REST!0.56!79.99!REST;;chr8:116681123..116681143,-!p4@TRPS1!0.56!5.76!TRPS1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.55!168.62!NFKBIZ;;chr18:77155922..77155939,+!p1@NFATC1!0.55!8.29!NFATC1;;chr15:96876966..96877017,+!p12@NR2F2!0.55!3.96!NR2F2;;chr12:26277929..26277955,-!p3@BHLHE41!0.55!3.96!BHLHE41;;chr17:59477275..59477286,+!p3@TBX2!0.55!3.60!TBX2;;chr5:137804405..137804444,+!p3@EGR1!0.55!3.24!EGR1;;chr7:150945865..150945896,-!p4@SMARCD3!0.55!2.52!SMARCD3;;chr17:7382810..7382822,-!p12@ZBTB4!0.55!2.52!ZBTB4;;chr1:170632683..170632696,+!p12@PRRX1!0.55!2.52!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.55!2.52!SIM2;;chr21:38071462..38071474,+!p3@SIM2!0.55!2.52!SIM2;;chr11:125034605..125034636,+!p2@PKNOX2!0.55!2.52!PKNOX2;;chr22:38598086..38598105,+!p1@MAFF!0.54!33.51!MAFF;;chr5:92918919..92918942,+!p1@NR2F1!0.54!13.69!NR2F1;;chr7:137563945..137564001,-!p6@CREB3L2!0.54!6.85!CREB3L2;;chr3:71114115..71114126,-!p14@FOXP1!0.54!4.68!FOXP1;;chr2:208031943..208031978,-!p5@KLF7!0.54!3.60!KLF7;;chr12:54447599..54447630,+!p3@HOXC4!0.54!3.24!HOXC4;;chr8:72756637..72756664,-!p3@MSC!0.54!2.88!MSC;;chr10:111967345..111967422,+!p1@MX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|ffid_belonging_in_development=CL:0000134,UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316
|fonse_cell_line=FF:0100224
|fonse_cell_line=FF:0100224
|fonse_cell_line_closure=FF:0100224
|fonse_cell_line_closure=FF:0100224
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg38.nobarcode.ctss.bed.gz
|id=FF:10778-110G4
|id=FF:10778-110G4
|is_a=DOID:3350;;DOID:3571;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0103519
|is_a=DOID:3350;;DOID:3571;;EFO:0002091;;FF:0000210;;FF:0103519
|is_obsolete=
|library_id=CNhs11868
|library_id_phase_based=2:CNhs11868
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10778
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10778
|name=hepatic mesenchymal tumor cell line:LI90
|name=hepatic mesenchymal tumor cell line:LI90
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11868,LSID830,release010,COMPLETED
|profile_hcage=CNhs11868,LSID830,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.0668173304391185,0,0,0,0,-0.026683369208149,0,0.140848634773887,-0.058708292308913,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346611288794873,0,0,0,0,0,0.1377219635068,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.133634660878237,0,0.420600500943542,0,0.133634660878237,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.133634660878237,0,0.083258855268568,0,0.0366422996356319,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0606146817333978,0,0,0,0,0,0,0.213873208359907,0.0668173304391185,0,0,-0.00773488980367754,-0.052071834053217,0,0.499934299143301,0.0668173304391185,0.546801581842338,-0.0980353512377064,0.0461800595256519,0,0,0,0.133634660878237,0,0,0.133634660878237,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.133634660878237,0,0,0.197621558862519,0.218115125449432,0,0,0,0,0,0
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|rna_box=110
|rna_box=110
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 78:
|rna_weight_ug=53.03574
|rna_weight_ug=53.03574
|sample_age=55
|sample_age=55
|sample_category=cell lines
|sample_cell_catalog=jcrb0160
|sample_cell_catalog=jcrb0160
|sample_cell_line=LI90
|sample_cell_line=LI90
Line 69: Line 91:
|sample_ethnicity=J
|sample_ethnicity=J
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.15162057456676e-223!GO:0005737;cytoplasm;2.71546363481748e-176!GO:0043226;organelle;4.41018803156871e-144!GO:0043229;intracellular organelle;7.60316663290616e-144!GO:0043231;intracellular membrane-bound organelle;3.03507751482726e-139!GO:0043227;membrane-bound organelle;6.27146834457114e-139!GO:0044444;cytoplasmic part;5.6669663476426e-129!GO:0044422;organelle part;1.3553948892096e-106!GO:0044446;intracellular organelle part;3.12809012012143e-105!GO:0005515;protein binding;1.6907924115128e-75!GO:0032991;macromolecular complex;9.10867397651343e-73!GO:0044238;primary metabolic process;2.49993900564116e-66!GO:0044237;cellular metabolic process;8.44562875492719e-65!GO:0043170;macromolecule metabolic process;4.12982627487775e-63!GO:0030529;ribonucleoprotein complex;3.38968126739568e-61!GO:0043233;organelle lumen;7.75141600863344e-55!GO:0031974;membrane-enclosed lumen;7.75141600863344e-55!GO:0019538;protein metabolic process;7.26008388385185e-51!GO:0031090;organelle membrane;1.60294783650889e-49!GO:0005739;mitochondrion;2.29100279098349e-48!GO:0003723;RNA binding;3.97791727336522e-48!GO:0044428;nuclear part;2.28084355400106e-47!GO:0044260;cellular macromolecule metabolic process;6.30001836399639e-46!GO:0044267;cellular protein metabolic process;1.10172384377314e-44!GO:0015031;protein transport;4.03209715772528e-43!GO:0033036;macromolecule localization;1.11402049600755e-42!GO:0016043;cellular component organization and biogenesis;2.57094816025014e-41!GO:0008104;protein localization;4.38837657705438e-40!GO:0045184;establishment of protein localization;4.44001182717425e-40!GO:0005634;nucleus;1.46686295932465e-39!GO:0005840;ribosome;1.57223291387785e-38!GO:0006412;translation;8.42969234334313e-38!GO:0043234;protein complex;3.34819162014644e-37!GO:0003735;structural constituent of ribosome;7.77845488182758e-35!GO:0046907;intracellular transport;4.72213581208502e-34!GO:0005829;cytosol;1.05111928129226e-33!GO:0044429;mitochondrial part;1.11671262791717e-33!GO:0009058;biosynthetic process;4.61063834068442e-33!GO:0009059;macromolecule biosynthetic process;8.00807930838965e-32!GO:0031981;nuclear lumen;3.48775185437123e-31!GO:0043283;biopolymer metabolic process;1.68397978339262e-30!GO:0031967;organelle envelope;2.8258856910258e-30!GO:0006396;RNA processing;3.91025302498223e-30!GO:0031975;envelope;5.87357865784187e-30!GO:0033279;ribosomal subunit;8.00558112873842e-30!GO:0044249;cellular biosynthetic process;4.39913809636018e-29!GO:0006886;intracellular protein transport;1.86105364696558e-27!GO:0016071;mRNA metabolic process;6.46670689675602e-27!GO:0010467;gene expression;2.0663461152629e-25!GO:0005783;endoplasmic reticulum;2.79818822480179e-25!GO:0008380;RNA splicing;5.83680683524393e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.55706364020106e-23!GO:0005740;mitochondrial envelope;1.05609107838859e-22!GO:0006397;mRNA processing;1.12596976570025e-22!GO:0012505;endomembrane system;2.02192745251827e-22!GO:0031966;mitochondrial membrane;1.67580656024293e-21!GO:0005794;Golgi apparatus;3.09494634543102e-21!GO:0051641;cellular localization;4.61436059011998e-21!GO:0051649;establishment of cellular localization;4.81542508894454e-21!GO:0019866;organelle inner membrane;7.69445739420903e-21!GO:0006996;organelle organization and biogenesis;8.58491223942446e-21!GO:0005654;nucleoplasm;1.10039185416926e-20!GO:0065003;macromolecular complex assembly;1.410452368008e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.37848951885695e-20!GO:0006119;oxidative phosphorylation;6.23609655256046e-20!GO:0005743;mitochondrial inner membrane;9.82340616202985e-20!GO:0006457;protein folding;1.41161033506998e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.56289965563726e-19!GO:0044432;endoplasmic reticulum part;2.70704286379105e-19!GO:0044445;cytosolic part;9.80599530534609e-19!GO:0000166;nucleotide binding;1.20563433705764e-18!GO:0043228;non-membrane-bound organelle;2.45397256639268e-18!GO:0043232;intracellular non-membrane-bound organelle;2.45397256639268e-18!GO:0044455;mitochondrial membrane part;3.6435879634296e-18!GO:0048193;Golgi vesicle transport;4.05920767015563e-18!GO:0022607;cellular component assembly;6.36251175576538e-18!GO:0048770;pigment granule;6.69777467045404e-18!GO:0042470;melanosome;6.69777467045404e-18!GO:0016462;pyrophosphatase activity;2.24069656917561e-17!GO:0044451;nucleoplasm part;2.43390807932922e-17!GO:0017111;nucleoside-triphosphatase activity;2.55429815724802e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.8312892537709e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;4.30709247203679e-17!GO:0005681;spliceosome;4.59030725638406e-17!GO:0015934;large ribosomal subunit;6.44043470739925e-17!GO:0008134;transcription factor binding;1.87196069903988e-16!GO:0016192;vesicle-mediated transport;1.04328360356356e-15!GO:0005746;mitochondrial respiratory chain;2.51829739215091e-15!GO:0043412;biopolymer modification;3.71482866081964e-15!GO:0006512;ubiquitin cycle;6.92030747198508e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;8.82038060895781e-15!GO:0016874;ligase activity;8.82038060895781e-15!GO:0051082;unfolded protein binding;1.61814220717238e-14!GO:0019941;modification-dependent protein catabolic process;1.83371034563549e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.83371034563549e-14!GO:0044257;cellular protein catabolic process;2.12788973378132e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.67915375221878e-14!GO:0022618;protein-RNA complex assembly;2.67915375221878e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.70017670926342e-14!GO:0044265;cellular macromolecule catabolic process;4.28050567520261e-14!GO:0006464;protein modification process;4.59099344018487e-14!GO:0032553;ribonucleotide binding;4.87682895532542e-14!GO:0032555;purine ribonucleotide binding;4.87682895532542e-14!GO:0017076;purine nucleotide binding;5.44629096382768e-14!GO:0015935;small ribosomal subunit;6.1127652348889e-14!GO:0006605;protein targeting;1.04268626294515e-13!GO:0043285;biopolymer catabolic process;1.36765658443556e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.81321661449044e-13!GO:0003954;NADH dehydrogenase activity;1.81321661449044e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.81321661449044e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.18890804734467e-13!GO:0031980;mitochondrial lumen;3.22312840853094e-13!GO:0005759;mitochondrial matrix;3.22312840853094e-13!GO:0005793;ER-Golgi intermediate compartment;5.12450842677187e-13!GO:0030163;protein catabolic process;8.23725710527934e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.15448174081861e-12!GO:0008135;translation factor activity, nucleic acid binding;1.19949556564502e-12!GO:0005789;endoplasmic reticulum membrane;1.29142858356669e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.39199555582632e-12!GO:0009057;macromolecule catabolic process;1.58825448237651e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.95746262389644e-12!GO:0051186;cofactor metabolic process;4.54926651022812e-12!GO:0043687;post-translational protein modification;8.22717207292603e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.2548666359299e-11!GO:0045271;respiratory chain complex I;1.2548666359299e-11!GO:0005747;mitochondrial respiratory chain complex I;1.2548666359299e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.25958267204574e-11!GO:0042773;ATP synthesis coupled electron transport;1.25958267204574e-11!GO:0048523;negative regulation of cellular process;1.68510163490385e-11!GO:0012501;programmed cell death;2.40349186170773e-11!GO:0003712;transcription cofactor activity;2.81698006083249e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.71054724193972e-11!GO:0044248;cellular catabolic process;3.71054724193972e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.42094253757641e-11!GO:0006915;apoptosis;8.7842724524169e-11!GO:0005730;nucleolus;1.00448217934804e-10!GO:0005524;ATP binding;1.23839937657009e-10!GO:0006259;DNA metabolic process;1.96076538476994e-10!GO:0044431;Golgi apparatus part;2.17713811729436e-10!GO:0032559;adenyl ribonucleotide binding;2.49161640118093e-10!GO:0005761;mitochondrial ribosome;2.59890512643825e-10!GO:0000313;organellar ribosome;2.59890512643825e-10!GO:0019787;small conjugating protein ligase activity;2.74817504622191e-10!GO:0030554;adenyl nucleotide binding;3.61200365855791e-10!GO:0008219;cell death;4.17827456828154e-10!GO:0016265;death;4.17827456828154e-10!GO:0008639;small protein conjugating enzyme activity;4.59082711231892e-10!GO:0048519;negative regulation of biological process;7.33574598572516e-10!GO:0004842;ubiquitin-protein ligase activity;8.03102179714406e-10!GO:0003743;translation initiation factor activity;8.29155924465632e-10!GO:0005788;endoplasmic reticulum lumen;9.01023008223106e-10!GO:0016070;RNA metabolic process;1.46753618357994e-09!GO:0006732;coenzyme metabolic process;1.50565362728666e-09!GO:0006413;translational initiation;2.00309852021103e-09!GO:0006913;nucleocytoplasmic transport;2.03099790702918e-09!GO:0009055;electron carrier activity;2.57424273903725e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.16235920413118e-09!GO:0006446;regulation of translational initiation;3.71985125866335e-09!GO:0051169;nuclear transport;4.35746993064087e-09!GO:0003676;nucleic acid binding;6.22533324021e-09!GO:0005768;endosome;6.37564256209228e-09!GO:0006888;ER to Golgi vesicle-mediated transport;7.04325676270374e-09!GO:0009259;ribonucleotide metabolic process;8.31348779633882e-09!GO:0016881;acid-amino acid ligase activity;8.58508490036706e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.03931495970497e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;9.73003347539253e-09!GO:0000375;RNA splicing, via transesterification reactions;9.73003347539253e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.73003347539253e-09!GO:0008565;protein transporter activity;1.14653209802923e-08!GO:0007049;cell cycle;1.3652064894898e-08!GO:0016887;ATPase activity;2.35610158300224e-08!GO:0003924;GTPase activity;2.40297620888475e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.43189004667551e-08!GO:0005635;nuclear envelope;2.68459368888789e-08!GO:0006163;purine nucleotide metabolic process;2.90173430071121e-08!GO:0009150;purine ribonucleotide metabolic process;2.90173430071121e-08!GO:0042623;ATPase activity, coupled;3.22200488998752e-08!GO:0016604;nuclear body;3.22835750986969e-08!GO:0030120;vesicle coat;3.54768231618777e-08!GO:0030662;coated vesicle membrane;3.54768231618777e-08!GO:0006366;transcription from RNA polymerase II promoter;3.63236118778498e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.66680814752601e-08!GO:0031965;nuclear membrane;4.38298244294137e-08!GO:0009260;ribonucleotide biosynthetic process;7.21229715905789e-08!GO:0009152;purine ribonucleotide biosynthetic process;7.6966110842851e-08!GO:0006164;purine nucleotide biosynthetic process;8.09583053612623e-08!GO:0003714;transcription corepressor activity;8.65264135569247e-08!GO:0050794;regulation of cellular process;9.26890560400828e-08!GO:0009141;nucleoside triphosphate metabolic process;9.51814197987916e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.51814197987916e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.51814197987916e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.70297661053142e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.70297661053142e-08!GO:0015986;ATP synthesis coupled proton transport;1.03138903129328e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.03138903129328e-07!GO:0000139;Golgi membrane;1.14233932837009e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.21453533653168e-07!GO:0017038;protein import;1.55359043692758e-07!GO:0006461;protein complex assembly;1.66932611591788e-07!GO:0006793;phosphorus metabolic process;2.26581667956039e-07!GO:0006796;phosphate metabolic process;2.26581667956039e-07!GO:0031252;leading edge;2.3911170521675e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.4050036620581e-07!GO:0043069;negative regulation of programmed cell death;2.58478158949415e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.58478158949415e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.58478158949415e-07!GO:0044453;nuclear membrane part;2.93671101060614e-07!GO:0051246;regulation of protein metabolic process;2.97953537162188e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.367139715619e-07!GO:0019829;cation-transporting ATPase activity;3.44740107087103e-07!GO:0048475;coated membrane;3.56578882751665e-07!GO:0030117;membrane coat;3.56578882751665e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.62124415120453e-07!GO:0016607;nuclear speck;3.73229629084242e-07!GO:0031988;membrane-bound vesicle;4.03478917481775e-07!GO:0016564;transcription repressor activity;4.26083181025489e-07!GO:0046034;ATP metabolic process;5.08803562142461e-07!GO:0005798;Golgi-associated vesicle;5.9695594288637e-07!GO:0006916;anti-apoptosis;6.33654067743446e-07!GO:0030036;actin cytoskeleton organization and biogenesis;6.4509734911307e-07!GO:0009060;aerobic respiration;6.67600532311994e-07!GO:0043066;negative regulation of apoptosis;6.8944567158608e-07!GO:0042254;ribosome biogenesis and assembly;8.0535829943022e-07!GO:0006754;ATP biosynthetic process;1.12921051273864e-06!GO:0006753;nucleoside phosphate metabolic process;1.12921051273864e-06!GO:0051789;response to protein stimulus;1.42383492543858e-06!GO:0006986;response to unfolded protein;1.42383492543858e-06!GO:0043067;regulation of programmed cell death;1.44832019636168e-06!GO:0031982;vesicle;1.96977320147389e-06!GO:0031410;cytoplasmic vesicle;2.01632600399665e-06!GO:0005773;vacuole;2.2040417000926e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.34581271334553e-06!GO:0008361;regulation of cell size;2.37464152459528e-06!GO:0016310;phosphorylation;2.60700656523993e-06!GO:0045333;cellular respiration;2.75735304043948e-06!GO:0042981;regulation of apoptosis;2.88387933233158e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.36352489943044e-06!GO:0004812;aminoacyl-tRNA ligase activity;3.36352489943044e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.36352489943044e-06!GO:0030029;actin filament-based process;3.53534925719828e-06!GO:0051726;regulation of cell cycle;3.64230907516537e-06!GO:0016049;cell growth;3.67555381310218e-06!GO:0009056;catabolic process;3.71197354407009e-06!GO:0044440;endosomal part;3.72340298131284e-06!GO:0010008;endosome membrane;3.72340298131284e-06!GO:0022402;cell cycle process;3.82997260475479e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.95149572748345e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.28084704319788e-06!GO:0000074;regulation of progression through cell cycle;4.50307935427469e-06!GO:0016491;oxidoreductase activity;4.8035802500509e-06!GO:0005667;transcription factor complex;4.84359560046679e-06!GO:0016787;hydrolase activity;4.89668030248665e-06!GO:0043038;amino acid activation;5.43873380454477e-06!GO:0006418;tRNA aminoacylation for protein translation;5.43873380454477e-06!GO:0043039;tRNA aminoacylation;5.43873380454477e-06!GO:0004386;helicase activity;5.59127654096977e-06!GO:0000151;ubiquitin ligase complex;5.61483226162565e-06!GO:0051188;cofactor biosynthetic process;6.86882487263543e-06!GO:0031324;negative regulation of cellular metabolic process;6.98031418478936e-06!GO:0032446;protein modification by small protein conjugation;7.06775213970251e-06!GO:0005525;GTP binding;7.37123508714075e-06!GO:0008026;ATP-dependent helicase activity;7.58094660587543e-06!GO:0008092;cytoskeletal protein binding;8.20013448839593e-06!GO:0050789;regulation of biological process;8.68422423282352e-06!GO:0006974;response to DNA damage stimulus;8.73349694440079e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.43920248644061e-06!GO:0016567;protein ubiquitination;9.50463271299511e-06!GO:0051170;nuclear import;9.55355430230954e-06!GO:0045259;proton-transporting ATP synthase complex;1.01521348267446e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.05319194777726e-05!GO:0045786;negative regulation of progression through cell cycle;1.0748907912931e-05!GO:0005770;late endosome;1.13904331493961e-05!GO:0030133;transport vesicle;1.22346951117091e-05!GO:0001558;regulation of cell growth;1.24691565579133e-05!GO:0006399;tRNA metabolic process;1.28771819284557e-05!GO:0006606;protein import into nucleus;1.31417427047448e-05!GO:0065002;intracellular protein transport across a membrane;1.34857909278495e-05!GO:0005643;nuclear pore;1.70767243567336e-05!GO:0006099;tricarboxylic acid cycle;1.76004765802043e-05!GO:0046356;acetyl-CoA catabolic process;1.76004765802043e-05!GO:0006752;group transfer coenzyme metabolic process;1.78940464005963e-05!GO:0009117;nucleotide metabolic process;2.031011555858e-05!GO:0000323;lytic vacuole;2.05870628680523e-05!GO:0005764;lysosome;2.05870628680523e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.15486168040319e-05!GO:0006613;cotranslational protein targeting to membrane;2.15829816623466e-05!GO:0007005;mitochondrion organization and biogenesis;2.2255632981755e-05!GO:0016740;transferase activity;2.31590663614926e-05!GO:0009109;coenzyme catabolic process;2.48911115633061e-05!GO:0032561;guanyl ribonucleotide binding;2.80606515523921e-05!GO:0019001;guanyl nucleotide binding;2.80606515523921e-05!GO:0051187;cofactor catabolic process;2.83495241486823e-05!GO:0008654;phospholipid biosynthetic process;3.48105586548401e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.90276964703249e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.22494988192809e-05!GO:0006084;acetyl-CoA metabolic process;5.60447764147404e-05!GO:0048522;positive regulation of cellular process;5.87130945428317e-05!GO:0005905;coated pit;5.87130945428317e-05!GO:0016859;cis-trans isomerase activity;5.93475679292534e-05!GO:0030867;rough endoplasmic reticulum membrane;6.10881759611681e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.32352620230129e-05!GO:0016563;transcription activator activity;7.72870917444219e-05!GO:0046930;pore complex;7.87288775739877e-05!GO:0000245;spliceosome assembly;8.21269277429801e-05!GO:0006281;DNA repair;9.88017631020106e-05!GO:0009892;negative regulation of metabolic process;0.0001033265922758!GO:0005769;early endosome;0.000105300652111756!GO:0016853;isomerase activity;0.000108585009627626!GO:0003713;transcription coactivator activity;0.000110121267794447!GO:0033116;ER-Golgi intermediate compartment membrane;0.000111404722077449!GO:0006403;RNA localization;0.000114013890156048!GO:0007243;protein kinase cascade;0.000117170441817281!GO:0009108;coenzyme biosynthetic process;0.000117222030410493!GO:0004298;threonine endopeptidase activity;0.000123161723131929!GO:0050657;nucleic acid transport;0.000129505921040245!GO:0051236;establishment of RNA localization;0.000129505921040245!GO:0050658;RNA transport;0.000129505921040245!GO:0005762;mitochondrial large ribosomal subunit;0.000137715132357023!GO:0000315;organellar large ribosomal subunit;0.000137715132357023!GO:0015630;microtubule cytoskeleton;0.000140293486712075!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000140293486712075!GO:0043566;structure-specific DNA binding;0.000141971784224933!GO:0007010;cytoskeleton organization and biogenesis;0.000143482578842438!GO:0015980;energy derivation by oxidation of organic compounds;0.000152601558284642!GO:0006892;post-Golgi vesicle-mediated transport;0.000160572921506833!GO:0006612;protein targeting to membrane;0.000163283539177282!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000167103959540839!GO:0007264;small GTPase mediated signal transduction;0.000169421439405003!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000171004277523209!GO:0006091;generation of precursor metabolites and energy;0.000181647990659801!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000229529791189383!GO:0015399;primary active transmembrane transporter activity;0.000229529791189383!GO:0004576;oligosaccharyl transferase activity;0.000240407392846884!GO:0003697;single-stranded DNA binding;0.000274118248500398!GO:0044262;cellular carbohydrate metabolic process;0.000280918989182253!GO:0008250;oligosaccharyl transferase complex;0.000283871792538095!GO:0005048;signal sequence binding;0.000286540264327231!GO:0040008;regulation of growth;0.000303394487564794!GO:0030027;lamellipodium;0.000304676178179736!GO:0016481;negative regulation of transcription;0.000310691425884185!GO:0016044;membrane organization and biogenesis;0.000315907291918289!GO:0006323;DNA packaging;0.00032137627327346!GO:0045454;cell redox homeostasis;0.00032706060348359!GO:0000278;mitotic cell cycle;0.000333349331803952!GO:0030663;COPI coated vesicle membrane;0.000347610447526754!GO:0030126;COPI vesicle coat;0.000347610447526754!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000348877161608527!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000351961348078621!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000352759539212507!GO:0016568;chromatin modification;0.000380725573465885!GO:0009719;response to endogenous stimulus;0.000385170646320132!GO:0005885;Arp2/3 protein complex;0.00040949232498121!GO:0006364;rRNA processing;0.000419712584992646!GO:0003724;RNA helicase activity;0.000455973613189355!GO:0030176;integral to endoplasmic reticulum membrane;0.000480466751073385!GO:0043623;cellular protein complex assembly;0.000480565177680743!GO:0019867;outer membrane;0.000535136565497925!GO:0031968;organelle outer membrane;0.000551905847916531!GO:0006891;intra-Golgi vesicle-mediated transport;0.00061706836053563!GO:0030137;COPI-coated vesicle;0.000620013693866926!GO:0016072;rRNA metabolic process;0.000715480634988943!GO:0005813;centrosome;0.000715750460794379!GO:0009967;positive regulation of signal transduction;0.000719819738809776!GO:0018196;peptidyl-asparagine modification;0.000815767474187669!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000815767474187669!GO:0008047;enzyme activator activity;0.000863617220883818!GO:0051276;chromosome organization and biogenesis;0.000942481730581714!GO:0051427;hormone receptor binding;0.00098557817220629!GO:0001726;ruffle;0.00098557817220629!GO:0043492;ATPase activity, coupled to movement of substances;0.00103778064017926!GO:0031072;heat shock protein binding;0.00104261321515381!GO:0019899;enzyme binding;0.0010612607934421!GO:0045045;secretory pathway;0.001061769615022!GO:0016197;endosome transport;0.00106255254545676!GO:0045792;negative regulation of cell size;0.00116998260088269!GO:0030308;negative regulation of cell growth;0.00132379462300368!GO:0030134;ER to Golgi transport vesicle;0.00134479292026735!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00134479292026735!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00136097216189057!GO:0005815;microtubule organizing center;0.00141896417930717!GO:0051920;peroxiredoxin activity;0.0014443498514355!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00151107670817219!GO:0051028;mRNA transport;0.00152543755187393!GO:0065007;biological regulation;0.00162640501205712!GO:0035257;nuclear hormone receptor binding;0.00167411680122809!GO:0043021;ribonucleoprotein binding;0.00168920990718724!GO:0003779;actin binding;0.00169553354707064!GO:0004177;aminopeptidase activity;0.00172304246149517!GO:0030127;COPII vesicle coat;0.00179242849451821!GO:0012507;ER to Golgi transport vesicle membrane;0.00179242849451821!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00184293493242635!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0018632842639322!GO:0030132;clathrin coat of coated pit;0.00186671233993071!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00188341857997522!GO:0046474;glycerophospholipid biosynthetic process;0.00190537424315103!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00195666895058232!GO:0006260;DNA replication;0.00202702688706591!GO:0005791;rough endoplasmic reticulum;0.00210815156845422!GO:0005741;mitochondrial outer membrane;0.00215720302559139!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00229176361100419!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00229176361100419!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00229176361100419!GO:0030658;transport vesicle membrane;0.00238625649880565!GO:0016779;nucleotidyltransferase activity;0.00240783647877902!GO:0048518;positive regulation of biological process;0.00240783647877902!GO:0048500;signal recognition particle;0.0026546309015452!GO:0045892;negative regulation of transcription, DNA-dependent;0.00276883533670791!GO:0051168;nuclear export;0.00290880399924701!GO:0031418;L-ascorbic acid binding;0.00291772300827154!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00305944995169206!GO:0043284;biopolymer biosynthetic process;0.0030737516878185!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00341128706633316!GO:0009165;nucleotide biosynthetic process;0.00357577400422879!GO:0003899;DNA-directed RNA polymerase activity;0.00365885844317459!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00371128046727179!GO:0003729;mRNA binding;0.00377148545547382!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00378677847560375!GO:0007050;cell cycle arrest;0.00410931475630923!GO:0022890;inorganic cation transmembrane transporter activity;0.00421605907180935!GO:0051329;interphase of mitotic cell cycle;0.00425761522356159!GO:0046489;phosphoinositide biosynthetic process;0.00443913192370401!GO:0030659;cytoplasmic vesicle membrane;0.00443913192370401!GO:0031543;peptidyl-proline dioxygenase activity;0.00457870555743907!GO:0008186;RNA-dependent ATPase activity;0.00460690937654582!GO:0007030;Golgi organization and biogenesis;0.00461957626216023!GO:0004674;protein serine/threonine kinase activity;0.00466840235207372!GO:0048471;perinuclear region of cytoplasm;0.00470405252482526!GO:0019843;rRNA binding;0.00479233725547222!GO:0008139;nuclear localization sequence binding;0.00487882934161397!GO:0048487;beta-tubulin binding;0.00501175573868896!GO:0000314;organellar small ribosomal subunit;0.00516877878802766!GO:0005763;mitochondrial small ribosomal subunit;0.00516877878802766!GO:0006818;hydrogen transport;0.00530862198050618!GO:0017166;vinculin binding;0.00539769421705995!GO:0015992;proton transport;0.00566073100024545!GO:0045893;positive regulation of transcription, DNA-dependent;0.00569837504030202!GO:0051252;regulation of RNA metabolic process;0.00592231011512675!GO:0045926;negative regulation of growth;0.00592355567496983!GO:0030660;Golgi-associated vesicle membrane;0.00675830412516391!GO:0030521;androgen receptor signaling pathway;0.00686382162382118!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00686382162382118!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00698761825495999!GO:0035258;steroid hormone receptor binding;0.00698761825495999!GO:0007040;lysosome organization and biogenesis;0.00702283199071568!GO:0019798;procollagen-proline dioxygenase activity;0.00716492627809277!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00743205911163095!GO:0045047;protein targeting to ER;0.00743205911163095!GO:0043681;protein import into mitochondrion;0.00746829062815083!GO:0005096;GTPase activator activity;0.00766781209164346!GO:0044420;extracellular matrix part;0.00774721008846152!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00789390972790908!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00789390972790908!GO:0048468;cell development;0.00818512432845555!GO:0065009;regulation of a molecular function;0.00825959659950656!GO:0051325;interphase;0.0083391905370679!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00836375724456615!GO:0015002;heme-copper terminal oxidase activity;0.00836375724456615!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00836375724456615!GO:0004129;cytochrome-c oxidase activity;0.00836375724456615!GO:0032940;secretion by cell;0.00838480779493305!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00843363540979458!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00873658330358841!GO:0045941;positive regulation of transcription;0.00901166715632638!GO:0006839;mitochondrial transport;0.00913638833041542!GO:0046467;membrane lipid biosynthetic process;0.00918488591514561!GO:0006607;NLS-bearing substrate import into nucleus;0.00955865644189405!GO:0005581;collagen;0.00961796415687232!GO:0007242;intracellular signaling cascade;0.0100543566907397!GO:0044433;cytoplasmic vesicle part;0.0100707041120563!GO:0030518;steroid hormone receptor signaling pathway;0.0101182785229833!GO:0030118;clathrin coat;0.0101932839398178!GO:0031901;early endosome membrane;0.0102090075590007!GO:0008610;lipid biosynthetic process;0.0103681784378584!GO:0000059;protein import into nucleus, docking;0.010670474544337!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0110259120879465!GO:0004004;ATP-dependent RNA helicase activity;0.0111118119642668!GO:0003746;translation elongation factor activity;0.0113151552111571!GO:0006497;protein amino acid lipidation;0.0114011043861252!GO:0043488;regulation of mRNA stability;0.0114810918526951!GO:0043487;regulation of RNA stability;0.0114810918526951!GO:0006897;endocytosis;0.011503982735894!GO:0010324;membrane invagination;0.011503982735894!GO:0006595;polyamine metabolic process;0.0116589182073419!GO:0065004;protein-DNA complex assembly;0.0117837538730326!GO:0006383;transcription from RNA polymerase III promoter;0.0118240035044417!GO:0006414;translational elongation;0.011827714835191!GO:0006650;glycerophospholipid metabolic process;0.0119047668313223!GO:0051128;regulation of cellular component organization and biogenesis;0.0120719329584073!GO:0005801;cis-Golgi network;0.0124646464610793!GO:0019222;regulation of metabolic process;0.0125247642039096!GO:0005869;dynactin complex;0.0125247642039096!GO:0005774;vacuolar membrane;0.0129937599470046!GO:0006509;membrane protein ectodomain proteolysis;0.0134259006955734!GO:0033619;membrane protein proteolysis;0.0134259006955734!GO:0003711;transcription elongation regulator activity;0.0136626365730862!GO:0030880;RNA polymerase complex;0.0139188710775588!GO:0001725;stress fiber;0.0139188710775588!GO:0032432;actin filament bundle;0.0139188710775588!GO:0007265;Ras protein signal transduction;0.014105838510716!GO:0001527;microfibril;0.0141558751526784!GO:0008312;7S RNA binding;0.0143474857625998!GO:0042802;identical protein binding;0.0145151271512955!GO:0007006;mitochondrial membrane organization and biogenesis;0.0149744654064604!GO:0006402;mRNA catabolic process;0.0149744654064604!GO:0015631;tubulin binding;0.015140251125157!GO:0030041;actin filament polymerization;0.0154976191142864!GO:0009966;regulation of signal transduction;0.0155840034291462!GO:0007033;vacuole organization and biogenesis;0.0156623183752224!GO:0030833;regulation of actin filament polymerization;0.0157787740628173!GO:0050811;GABA receptor binding;0.016182261752082!GO:0000209;protein polyubiquitination;0.0161880838145865!GO:0031902;late endosome membrane;0.0169390373721204!GO:0030145;manganese ion binding;0.0169995424176395!GO:0046519;sphingoid metabolic process;0.0170510212426625!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0175616012136228!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0175616012136228!GO:0046483;heterocycle metabolic process;0.0179021811088987!GO:0016272;prefoldin complex;0.0189235733132522!GO:0051087;chaperone binding;0.019111256735303!GO:0012506;vesicle membrane;0.0192008492832196!GO:0031625;ubiquitin protein ligase binding;0.019341299234238!GO:0003690;double-stranded DNA binding;0.0200990268956868!GO:0016126;sterol biosynthetic process;0.020158389722592!GO:0006984;ER-nuclear signaling pathway;0.0202522330609784!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0203886001666979!GO:0008154;actin polymerization and/or depolymerization;0.0208026838285733!GO:0006626;protein targeting to mitochondrion;0.0210534127114887!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0210605129243476!GO:0031529;ruffle organization and biogenesis;0.0211781887893383!GO:0006950;response to stress;0.0213664883541462!GO:0031301;integral to organelle membrane;0.0213716031428579!GO:0006740;NADPH regeneration;0.0213880919271241!GO:0006098;pentose-phosphate shunt;0.0213880919271241!GO:0000339;RNA cap binding;0.0215727845994311!GO:0006333;chromatin assembly or disassembly;0.0217660666143348!GO:0051301;cell division;0.0218629743888432!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0218629743888432!GO:0050681;androgen receptor binding;0.0218629743888432!GO:0005586;collagen type III;0.0222713033572762!GO:0008022;protein C-terminus binding;0.0225956401325906!GO:0003756;protein disulfide isomerase activity;0.0228667098988116!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0228667098988116!GO:0005862;muscle thin filament tropomyosin;0.0235980168072449!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.023603113773043!GO:0016363;nuclear matrix;0.0241934584738312!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0245785611301687!GO:0000428;DNA-directed RNA polymerase complex;0.0245785611301687!GO:0042158;lipoprotein biosynthetic process;0.024613238355498!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0247809197873618!GO:0006352;transcription initiation;0.0247828224817261!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0252531788707361!GO:0000082;G1/S transition of mitotic cell cycle;0.0255705730329951!GO:0006979;response to oxidative stress;0.0256340252005195!GO:0018193;peptidyl-amino acid modification;0.0259856259877408!GO:0048144;fibroblast proliferation;0.0264486168407989!GO:0048145;regulation of fibroblast proliferation;0.0264486168407989!GO:0030032;lamellipodium biogenesis;0.0266083155878331!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0266083155878331!GO:0030384;phosphoinositide metabolic process;0.0268869447876963!GO:0030433;ER-associated protein catabolic process;0.0272751372267203!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0272751372267203!GO:0035035;histone acetyltransferase binding;0.0272751372267203!GO:0044437;vacuolar part;0.0274097422213896!GO:0008632;apoptotic program;0.0274104688227623!GO:0022415;viral reproductive process;0.0274592269404096!GO:0009112;nucleobase metabolic process;0.0285036770882592!GO:0033559;unsaturated fatty acid metabolic process;0.029590717151827!GO:0006636;unsaturated fatty acid biosynthetic process;0.029590717151827!GO:0006672;ceramide metabolic process;0.0296321016327984!GO:0007034;vacuolar transport;0.0296354554721814!GO:0030119;AP-type membrane coat adaptor complex;0.0298077261708131!GO:0006893;Golgi to plasma membrane transport;0.0301895639437752!GO:0016311;dephosphorylation;0.0301895639437752!GO:0005669;transcription factor TFIID complex;0.0305776122210672!GO:0022403;cell cycle phase;0.0307646152784625!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0308611763973732!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0309932660504751!GO:0007569;cell aging;0.0312400719975364!GO:0006354;RNA elongation;0.0312592975501985!GO:0008180;signalosome;0.031445850656522!GO:0016301;kinase activity;0.0314840009013879!GO:0005100;Rho GTPase activator activity;0.0319874353580278!GO:0004287;prolyl oligopeptidase activity;0.0319874353580278!GO:0005832;chaperonin-containing T-complex;0.0322505923571153!GO:0031371;ubiquitin conjugating enzyme complex;0.03268889645323!GO:0008286;insulin receptor signaling pathway;0.0328879531550288!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0336188118898185!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0336188118898185!GO:0005765;lysosomal membrane;0.0336188118898185!GO:0051287;NAD binding;0.0346127577173318!GO:0033673;negative regulation of kinase activity;0.0349815067339565!GO:0006469;negative regulation of protein kinase activity;0.0349815067339565!GO:0051272;positive regulation of cell motility;0.0349815067339565!GO:0040017;positive regulation of locomotion;0.0349815067339565!GO:0030125;clathrin vesicle coat;0.0351773914816899!GO:0030665;clathrin coated vesicle membrane;0.0351773914816899!GO:0005099;Ras GTPase activator activity;0.0352582027025489!GO:0000049;tRNA binding;0.0366112658220253!GO:0006506;GPI anchor biosynthetic process;0.0370723675246017!GO:0030522;intracellular receptor-mediated signaling pathway;0.0374760679046613!GO:0016251;general RNA polymerase II transcription factor activity;0.038765068248147!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0395557864610998!GO:0033043;regulation of organelle organization and biogenesis;0.0395557864610998!GO:0048146;positive regulation of fibroblast proliferation;0.0398047219754773!GO:0006505;GPI anchor metabolic process;0.0403015110602755!GO:0005684;U2-dependent spliceosome;0.0411943756819592!GO:0030911;TPR domain binding;0.0411943756819592!GO:0000902;cell morphogenesis;0.0411943756819592!GO:0032989;cellular structure morphogenesis;0.0411943756819592!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0414086627312388!GO:0051348;negative regulation of transferase activity;0.0414086627312388!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0414086627312388!GO:0019752;carboxylic acid metabolic process;0.0416261152360929!GO:0007160;cell-matrix adhesion;0.0421506723837924!GO:0031124;mRNA 3'-end processing;0.0423174555941426!GO:0005694;chromosome;0.0425902988615566!GO:0001666;response to hypoxia;0.0426085880246003!GO:0031589;cell-substrate adhesion;0.0433890586639363!GO:0006289;nucleotide-excision repair;0.0433890586639363!GO:0005083;small GTPase regulator activity;0.0433890586639363!GO:0032906;transforming growth factor-beta2 production;0.0433890586639363!GO:0032909;regulation of transforming growth factor-beta2 production;0.0433890586639363!GO:0006611;protein export from nucleus;0.0437704687519036!GO:0008234;cysteine-type peptidase activity;0.0439087300074815!GO:0005874;microtubule;0.0442227661234176!GO:0051101;regulation of DNA binding;0.0447214011718087!GO:0006082;organic acid metabolic process;0.0447214011718087!GO:0030131;clathrin adaptor complex;0.0464674298825756!GO:0030149;sphingolipid catabolic process;0.0472714866871593!GO:0005938;cell cortex;0.0477997312242965!GO:0007041;lysosomal transport;0.0479163371073356!GO:0003684;damaged DNA binding;0.0482560562571033!GO:0000785;chromatin;0.0485820760993894!GO:0006007;glucose catabolic process;0.0493463398415194
|sample_id=10778
|sample_id=10778
|sample_note=
|sample_note=
Line 76: Line 99:
|sample_tissue=liver
|sample_tissue=liver
|top_motifs=HMGA1,2:3.76196590613;HSF1,2:2.06734380158;NKX2-2,8:1.99129792399;DBP:1.76255558389;HOX{A5,B5}:1.75887129628;MYBL2:1.75715643244;NKX3-1:1.69518805962;GLI1..3:1.65570918873;SRF:1.65377988812;EVI1:1.65003229952;TAL1_TCF{3,4,12}:1.55692687205;ZNF384:1.52786853767;XBP1:1.48535379859;FOXL1:1.4745550671;NKX3-2:1.41297492481;TEAD1:1.41086019576;POU3F1..4:1.40289148501;UFEwm:1.36695684371;HES1:1.3106913589;NFATC1..3:1.25005789086;TP53:1.23871371415;HIF1A:1.20891988765;PPARG:1.20472233871;TFAP4:1.18210369883;TOPORS:1.16255813738;KLF4:1.16220255582;ESR1:1.14423427963;TEF:1.10600037866;ADNP_IRX_SIX_ZHX:1.09033347577;PRDM1:1.06604297768;PITX1..3:1.05627946714;AIRE:1.0466550324;ALX4:1.0159436299;NR6A1:1.00554082906;HAND1,2:0.994528025236;TFAP2B:0.935830946811;PAX4:0.932022557033;TFAP2{A,C}:0.897338848464;GATA4:0.855982510149;TBX4,5:0.854606493596;NR3C1:0.843030802716;MTE{core}:0.837976960831;HMX1:0.830293508879;XCPE1{core}:0.822912122543;GCM1,2:0.807043552686;LHX3,4:0.806747999174;AHR_ARNT_ARNT2:0.795372274385;FOXA2:0.792734001172;NFIX:0.785386278322;GTF2A1,2:0.776288564353;HIC1:0.737211120065;HBP1_HMGB_SSRP1_UBTF:0.719680193344;NFE2L1:0.697713794941;EN1,2:0.6922528888;VSX1,2:0.672469938833;TFCP2:0.660411937688;POU1F1:0.650997649753;POU6F1:0.641220278924;PAX3,7:0.639463060431;HOX{A6,A7,B6,B7}:0.636231442583;ATF6:0.615559971027;HOXA9_MEIS1:0.608026750703;RXRA_VDR{dimer}:0.606469394361;ZNF423:0.573907221565;SOX17:0.551018498489;ZBTB16:0.540688440568;TLX1..3_NFIC{dimer}:0.526632257217;PAX8:0.521792742598;GTF2I:0.489633955147;MAZ:0.477633783343;EBF1:0.476697657724;HLF:0.440596781514;ZFP161:0.430910460063;MEF2{A,B,C,D}:0.401221992715;MAFB:0.391555265731;NKX2-1,4:0.373082648565;SPZ1:0.347062494994;ZNF238:0.335007820292;GZF1:0.325192607916;PAX1,9:0.303897639047;ONECUT1,2:0.299354552911;PATZ1:0.298003946178;PAX6:0.290732650786;AR:0.269663455651;ZBTB6:0.2679944866;RXR{A,B,G}:0.226266879802;TBP:0.218898802716;POU5F1:0.186034180243;IKZF1:0.177457447939;NKX2-3_NKX2-5:0.170599894378;NFE2L2:0.17010611493;NANOG{mouse}:0.168888584941;HOX{A4,D4}:0.168412711625;EGR1..3:0.165136705357;FOXP1:0.164966858656;MTF1:0.164297790727;HNF1A:0.151517826657;PAX5:0.150457968843;CRX:0.14433940388;STAT2,4,6:0.123579656547;MZF1:0.122369207561;ZIC1..3:0.117329622316;FOXD3:0.108977103587;MYFfamily:0.101939165735;MED-1{core}:0.0973765322709;ARID5B:0.0824113015667;REST:0.0498803753622;SMAD1..7,9:-0.00755929373947;ALX1:-0.00837014714901;JUN:-0.0359841183937;GFI1B:-0.0536466512155;IRF1,2:-0.0540322354737;LEF1_TCF7_TCF7L1,2:-0.0793101936501;TFDP1:-0.0834395637117;BACH2:-0.116437973931;SOX5:-0.130305798091;CREB1:-0.141613066063;ATF2:-0.148135945091;SP1:-0.14933392401;FOSL2:-0.163570394816;FOX{I1,J2}:-0.166162389499;FOS_FOS{B,L1}_JUN{B,D}:-0.173571849646;BPTF:-0.175621858963;NFKB1_REL_RELA:-0.179745619658;FOX{D1,D2}:-0.182088879385;NFE2:-0.198120048449;ZNF148:-0.218076823364;RUNX1..3:-0.265196973663;SOX2:-0.270475244873;IKZF2:-0.316337166908;CDC5L:-0.366252438561;GATA6:-0.368199993472;FOXP3:-0.408504751695;RORA:-0.415135298342;FOXN1:-0.42103772659;RREB1:-0.426423684442;ATF5_CREB3:-0.438534697321;STAT5{A,B}:-0.457167971486;ETS1,2:-0.475119253418;HNF4A_NR2F1,2:-0.487777695584;TLX2:-0.489031514798;RFX1:-0.490214721277;SPI1:-0.504776597526;PAX2:-0.507169879223;FOXO1,3,4:-0.519461372491;MYB:-0.530990010155;T:-0.530998814805;LMO2:-0.536557756278;FOXM1:-0.539508290361;TGIF1:-0.550916936802;FOX{F1,F2,J1}:-0.551359737215;CEBPA,B_DDIT3:-0.562581130981;CDX1,2,4:-0.583505355373;ELK1,4_GABP{A,B1}:-0.586001734698;PRRX1,2:-0.619115595645;ZNF143:-0.620357478063;SNAI1..3:-0.628929370991;SOX{8,9,10}:-0.631129715879;NHLH1,2:-0.633452771093;SPIB:-0.635672444108;ATF4:-0.640048882854;NKX6-1,2:-0.646450626685;IRF7:-0.660986070505;SREBF1,2:-0.708126616963;bHLH_family:-0.709845442741;BREu{core}:-0.721527325232;NRF1:-0.727179452218;DMAP1_NCOR{1,2}_SMARC:-0.772616495001;NANOG:-0.7814370945;NFIL3:-0.798540423309;ELF1,2,4:-0.821910977783;NR5A1,2:-0.886395514945;CUX2:-0.889119166655;E2F1..5:-0.940853171693;OCT4_SOX2{dimer}:-0.944220300395;ZEB1:-0.952055612191;POU2F1..3:-1.03873936586;NR1H4:-1.12803760214;RFX2..5_RFXANK_RFXAP:-1.13864024044;FOXQ1:-1.17636548402;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.20349448128;ESRRA:-1.23291448547;STAT1,3:-1.30562595952;NFY{A,B,C}:-1.33146922956;GFI1:-1.34367062905;YY1:-1.3537394608;EP300:-1.3652038981;PBX1:-1.38019152604;RBPJ:-1.52949365034;MYOD1:-1.82606482068;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.86652837228;PDX1:-1.88791334949
|top_motifs=HMGA1,2:3.76196590613;HSF1,2:2.06734380158;NKX2-2,8:1.99129792399;DBP:1.76255558389;HOX{A5,B5}:1.75887129628;MYBL2:1.75715643244;NKX3-1:1.69518805962;GLI1..3:1.65570918873;SRF:1.65377988812;EVI1:1.65003229952;TAL1_TCF{3,4,12}:1.55692687205;ZNF384:1.52786853767;XBP1:1.48535379859;FOXL1:1.4745550671;NKX3-2:1.41297492481;TEAD1:1.41086019576;POU3F1..4:1.40289148501;UFEwm:1.36695684371;HES1:1.3106913589;NFATC1..3:1.25005789086;TP53:1.23871371415;HIF1A:1.20891988765;PPARG:1.20472233871;TFAP4:1.18210369883;TOPORS:1.16255813738;KLF4:1.16220255582;ESR1:1.14423427963;TEF:1.10600037866;ADNP_IRX_SIX_ZHX:1.09033347577;PRDM1:1.06604297768;PITX1..3:1.05627946714;AIRE:1.0466550324;ALX4:1.0159436299;NR6A1:1.00554082906;HAND1,2:0.994528025236;TFAP2B:0.935830946811;PAX4:0.932022557033;TFAP2{A,C}:0.897338848464;GATA4:0.855982510149;TBX4,5:0.854606493596;NR3C1:0.843030802716;MTE{core}:0.837976960831;HMX1:0.830293508879;XCPE1{core}:0.822912122543;GCM1,2:0.807043552686;LHX3,4:0.806747999174;AHR_ARNT_ARNT2:0.795372274385;FOXA2:0.792734001172;NFIX:0.785386278322;GTF2A1,2:0.776288564353;HIC1:0.737211120065;HBP1_HMGB_SSRP1_UBTF:0.719680193344;NFE2L1:0.697713794941;EN1,2:0.6922528888;VSX1,2:0.672469938833;TFCP2:0.660411937688;POU1F1:0.650997649753;POU6F1:0.641220278924;PAX3,7:0.639463060431;HOX{A6,A7,B6,B7}:0.636231442583;ATF6:0.615559971027;HOXA9_MEIS1:0.608026750703;RXRA_VDR{dimer}:0.606469394361;ZNF423:0.573907221565;SOX17:0.551018498489;ZBTB16:0.540688440568;TLX1..3_NFIC{dimer}:0.526632257217;PAX8:0.521792742598;GTF2I:0.489633955147;MAZ:0.477633783343;EBF1:0.476697657724;HLF:0.440596781514;ZFP161:0.430910460063;MEF2{A,B,C,D}:0.401221992715;MAFB:0.391555265731;NKX2-1,4:0.373082648565;SPZ1:0.347062494994;ZNF238:0.335007820292;GZF1:0.325192607916;PAX1,9:0.303897639047;ONECUT1,2:0.299354552911;PATZ1:0.298003946178;PAX6:0.290732650786;AR:0.269663455651;ZBTB6:0.2679944866;RXR{A,B,G}:0.226266879802;TBP:0.218898802716;POU5F1:0.186034180243;IKZF1:0.177457447939;NKX2-3_NKX2-5:0.170599894378;NFE2L2:0.17010611493;NANOG{mouse}:0.168888584941;HOX{A4,D4}:0.168412711625;EGR1..3:0.165136705357;FOXP1:0.164966858656;MTF1:0.164297790727;HNF1A:0.151517826657;PAX5:0.150457968843;CRX:0.14433940388;STAT2,4,6:0.123579656547;MZF1:0.122369207561;ZIC1..3:0.117329622316;FOXD3:0.108977103587;MYFfamily:0.101939165735;MED-1{core}:0.0973765322709;ARID5B:0.0824113015667;REST:0.0498803753622;SMAD1..7,9:-0.00755929373947;ALX1:-0.00837014714901;JUN:-0.0359841183937;GFI1B:-0.0536466512155;IRF1,2:-0.0540322354737;LEF1_TCF7_TCF7L1,2:-0.0793101936501;TFDP1:-0.0834395637117;BACH2:-0.116437973931;SOX5:-0.130305798091;CREB1:-0.141613066063;ATF2:-0.148135945091;SP1:-0.14933392401;FOSL2:-0.163570394816;FOX{I1,J2}:-0.166162389499;FOS_FOS{B,L1}_JUN{B,D}:-0.173571849646;BPTF:-0.175621858963;NFKB1_REL_RELA:-0.179745619658;FOX{D1,D2}:-0.182088879385;NFE2:-0.198120048449;ZNF148:-0.218076823364;RUNX1..3:-0.265196973663;SOX2:-0.270475244873;IKZF2:-0.316337166908;CDC5L:-0.366252438561;GATA6:-0.368199993472;FOXP3:-0.408504751695;RORA:-0.415135298342;FOXN1:-0.42103772659;RREB1:-0.426423684442;ATF5_CREB3:-0.438534697321;STAT5{A,B}:-0.457167971486;ETS1,2:-0.475119253418;HNF4A_NR2F1,2:-0.487777695584;TLX2:-0.489031514798;RFX1:-0.490214721277;SPI1:-0.504776597526;PAX2:-0.507169879223;FOXO1,3,4:-0.519461372491;MYB:-0.530990010155;T:-0.530998814805;LMO2:-0.536557756278;FOXM1:-0.539508290361;TGIF1:-0.550916936802;FOX{F1,F2,J1}:-0.551359737215;CEBPA,B_DDIT3:-0.562581130981;CDX1,2,4:-0.583505355373;ELK1,4_GABP{A,B1}:-0.586001734698;PRRX1,2:-0.619115595645;ZNF143:-0.620357478063;SNAI1..3:-0.628929370991;SOX{8,9,10}:-0.631129715879;NHLH1,2:-0.633452771093;SPIB:-0.635672444108;ATF4:-0.640048882854;NKX6-1,2:-0.646450626685;IRF7:-0.660986070505;SREBF1,2:-0.708126616963;bHLH_family:-0.709845442741;BREu{core}:-0.721527325232;NRF1:-0.727179452218;DMAP1_NCOR{1,2}_SMARC:-0.772616495001;NANOG:-0.7814370945;NFIL3:-0.798540423309;ELF1,2,4:-0.821910977783;NR5A1,2:-0.886395514945;CUX2:-0.889119166655;E2F1..5:-0.940853171693;OCT4_SOX2{dimer}:-0.944220300395;ZEB1:-0.952055612191;POU2F1..3:-1.03873936586;NR1H4:-1.12803760214;RFX2..5_RFXANK_RFXAP:-1.13864024044;FOXQ1:-1.17636548402;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.20349448128;ESRRA:-1.23291448547;STAT1,3:-1.30562595952;NFY{A,B,C}:-1.33146922956;GFI1:-1.34367062905;YY1:-1.3537394608;EP300:-1.3652038981;PBX1:-1.38019152604;RBPJ:-1.52949365034;MYOD1:-1.82606482068;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.86652837228;PDX1:-1.88791334949
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10778-110G4;search_select_hide=table117:FF:10778-110G4
}}
}}

Latest revision as of 15:04, 3 June 2020

Name:hepatic mesenchymal tumor cell line:LI90
Species:Human (Homo sapiens)
Library ID:CNhs11868
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexfemale
age55
cell typeadipocyte, lipocyte of liver
cell lineLI90
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005769
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11868 CAGE DRX007903 DRR008775
Accession ID Hg19

Library idBAMCTSS
CNhs11868 DRZ000200 DRZ001585
Accession ID Hg38

Library idBAMCTSS
CNhs11868 DRZ011550 DRZ012935
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0773
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.295
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair1
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0992
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0386
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.447
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.241
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.288
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.388
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.791
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma1.038
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.134
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0563
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0262
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.507
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.217
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.236
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.663
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.0155
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.781
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.045
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.072
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.951
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.974
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11868

Jaspar motifP-value
MA0002.20.277
MA0003.10.976
MA0004.10.0143
MA0006.10.247
MA0007.10.917
MA0009.10.305
MA0014.10.254
MA0017.10.165
MA0018.23.75211e-4
MA0019.10.456
MA0024.12.42038e-8
MA0025.10.0211
MA0027.10.249
MA0028.12.9846e-5
MA0029.10.501
MA0030.10.129
MA0031.10.209
MA0035.20.0541
MA0038.12.69328e-4
MA0039.21.74438e-5
MA0040.10.523
MA0041.10.845
MA0042.10.797
MA0043.16.01969e-4
MA0046.10.185
MA0047.20.965
MA0048.10.057
MA0050.10.037
MA0051.10.0109
MA0052.10.211
MA0055.10.349
MA0057.10.75
MA0058.13.70481e-5
MA0059.10.0478
MA0060.13.10758e-14
MA0061.10.148
MA0062.22.43081e-14
MA0065.20.083
MA0066.10.799
MA0067.10.0252
MA0068.10.507
MA0069.10.33
MA0070.10.676
MA0071.10.967
MA0072.10.746
MA0073.10.261
MA0074.10.827
MA0076.13.20302e-7
MA0077.10.769
MA0078.10.521
MA0079.20.866
MA0080.24.11664e-8
MA0081.15.95943e-4
MA0083.13.3861e-4
MA0084.10.777
MA0087.10.822
MA0088.10.0119
MA0090.11.5875e-5
MA0091.10.0986
MA0092.10.00888
MA0093.10.00615
MA0099.20.0755
MA0100.10.123
MA0101.10.236
MA0102.20.0515
MA0103.10.0154
MA0104.21.92545e-4
MA0105.10.0605
MA0106.10.0415
MA0107.10.429
MA0108.20.358
MA0111.10.335
MA0112.20.238
MA0113.10.835
MA0114.10.142
MA0115.10.077
MA0116.10.331
MA0117.10.233
MA0119.10.0181
MA0122.10.605
MA0124.10.204
MA0125.10.213
MA0131.10.0867
MA0135.10.151
MA0136.11.75954e-11
MA0137.20.0175
MA0138.20.62
MA0139.10.249
MA0140.10.321
MA0141.10.252
MA0142.10.168
MA0143.10.653
MA0144.10.995
MA0145.10.691
MA0146.10.37
MA0147.10.0027
MA0148.10.763
MA0149.10.534
MA0150.10.327
MA0152.10.124
MA0153.10.41
MA0154.10.604
MA0155.10.311
MA0156.12.26646e-9
MA0157.10.559
MA0159.10.704
MA0160.10.154
MA0162.10.412
MA0163.10.855
MA0164.10.367
MA0258.10.274
MA0259.10.109



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11868

Novel motifP-value
10.797
100.69
1000.499
1010.631
1020.133
1030.449
1040.564
1050.28
1060.00377
1070.00916
1080.423
1090.813
110.575
1100.468
1110.604
1120.429
1130.553
1140.214
1150.239
1160.0206
1170.261
1180.757
1190.0893
120.138
1200.402
1210.443
1220.142
1230.941
1240.655
1250.875
1260.632
1270.938
1280.0527
1290.352
130.0822
1300.508
1310.188
1320.517
1330.932
1340.637
1350.429
1360.379
1370.473
1380.736
1390.034
140.311
1400.476
1410.566
1420.712
1430.75
1440.509
1450.812
1460.269
1470.135
1480.938
1490.00502
150.692
1500.0609
1510.468
1520.0338
1530.63
1540.354
1550.0467
1560.415
1570.532
1580.13
1590.461
160.0937
1600.655
1610.978
1620.864
1630.551
1640.0466
1650.591
1660.037
1670.911
1680.482
1690.405
170.271
180.24
190.0761
20.161
200.403
210.421
220.637
230.005
240.316
250.139
260.498
270.974
280.416
290.465
30.545
300.724
310.392
322.84197e-14
330.183
340.674
350.921
360.0814
370.781
380.81
390.523
40.679
400.181
410.955
420.64
430.479
440.704
450.937
460.183
470.672
480.672
490.426
50.172
500.636
510.94
520.263
530.858
540.401
550.168
560.853
570.226
580.538
590.389
60.462
600.225
610.399
620.617
630.19
640.938
650.323
660.172
670.191
680.794
690.619
70.277
700.263
710.919
720.435
730.0756
740.0839
750.249
760.991
770.0684
780.988
790.0015
80.29
800.204
810.854
820.0927
830.592
840.789
859.40643e-4
860.916
870.832
880.608
890.352
90.778
900.452
910.538
920.0146
930.915
940.197
950.737
960.684
970.26
980.246
990.0192



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11868


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000632 (hepatic stellate cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3119 (gastrointestinal system cancer)
3350 (mesenchymal cell neoplasm)
3571 (liver cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100224 (liver cell line sample)
0103513 (hepatic stellate cell line sample)
0103519 (LI90 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

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