FF:10158-103A5: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005263 | ||
|ancestors_in_cell_lineage_facet= | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005263 | ||
|HumanCAGEScanFiles=NCig10029;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/substantia%2520nigra%252c%2520adult%252c%2520donor10252.NCig10029.10158-103A5.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/substantia%2520nigra%252c%2520adult%252c%2520donor10252.NCig10029.10158-103A5.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/substantia%2520nigra%252c%2520adult%252c%2520donor10252.NCig10029.10158-103A5.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/substantia%2520nigra%252c%2520adult%252c%2520donor10252.NCig10029.10158-103A5.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008735;DRR009607;DRZ001032;DRZ002417;DRZ012382;DRZ013767 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057153;DRR062912;DRZ007988 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002038,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0009661,UBERON:0000125,UBERON:0002950,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001893,UBERON:0001890,UBERON:0001891,UBERON:0010011,UBERON:0000454 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010158 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/substantia%2520nigra%252c%2520adult%252c%2520donor10252.CNhs12318.10158-103A5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/substantia%2520nigra%252c%2520adult%252c%2520donor10252.CNhs12318.10158-103A5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/substantia%2520nigra%252c%2520adult%252c%2520donor10252.CNhs12318.10158-103A5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/substantia%2520nigra%252c%2520adult%252c%2520donor10252.CNhs12318.10158-103A5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/substantia%2520nigra%252c%2520adult%252c%2520donor10252.CNhs12318.10158-103A5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10158-103A5 | |id=FF:10158-103A5 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0010158 | ||
|is_obsolete= | |||
|library_id=CNhs12318 | |||
|library_id_phase_based=2:CNhs12318 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10158 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10158 | |||
|name=substantia nigra, adult, donor10252 | |name=substantia nigra, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=NCig10029,,, | |profile_cagescan=NCig10029,,, | ||
|profile_hcage=CNhs12318,LSID913,release011,COMPLETED | |profile_hcage=CNhs12318,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0.0581752393062885,0,0,0,0,0.301762701288,0,-0.050847761095427,0.155341731682672,0.200735788913154,0.759163421368814,0,0,0,0.0581752393062885,0,0,0,0,0,0.269521699811985,0,0,0,0.178451717434254,0,0.17992307480612,0,0.55036626060495,0,0.489392877296014,0,0,0.420940083775563,0,0,0,0,0,0,0,0,0,0,0,0,0.0072492397917104,0.456884232126426,0,0,0,0,0,0,0,0.00487259854030989,0,0.0581752393062885,0,0.434580878552298,0,0.116046784292776,0.109470268990959,0.7834565463181,0,0,0.288869132543855,0.109470268990959,0,0,0,0,0,0,0,0.109470268990959,0,0,0,0,0.0581752393062885,0,0,0.109470268990959,0.196827644524487,0.0290876196531442,0,0,0,0.0581752393062885,0.123213754818791,0.109470268990959,0.404806004850849,0,0.222277728614385,0.356918959838155,0.233386471081331,0.077670865841336,0,0.0547351344954795,0.109470268990959,0.336545527314592,0.403340201270771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.331774727782682,0,0,0.109454386574887,0.0917423073727178,0.0581752393062885,0,0.141065976375999,0.215760762195072,0,0 | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 81: | ||
|rna_tube_id=103A5 | |rna_tube_id=103A5 | ||
|rna_weight_ug=33.85725 | |rna_weight_ug=33.85725 | ||
|rnaseq_library_id=RDhi10096 | |||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.80572568389827e-246!GO:0005737;cytoplasm;7.14375093176133e-151!GO:0043226;organelle;6.92505167570884e-125!GO:0043229;intracellular organelle;1.59285640367004e-124!GO:0043227;membrane-bound organelle;2.15495123261607e-121!GO:0043231;intracellular membrane-bound organelle;2.74440183982848e-121!GO:0044444;cytoplasmic part;3.5624412941152e-99!GO:0005515;protein binding;1.66369004791487e-72!GO:0044422;organelle part;3.21905301167401e-71!GO:0044446;intracellular organelle part;3.28562585486714e-70!GO:0032991;macromolecular complex;3.1284466499527e-58!GO:0003723;RNA binding;8.80499554235599e-45!GO:0030529;ribonucleoprotein complex;1.55704378792145e-44!GO:0044238;primary metabolic process;3.21922627060256e-44!GO:0044237;cellular metabolic process;1.57614909015514e-43!GO:0005739;mitochondrion;5.52774847394151e-42!GO:0043233;organelle lumen;9.82419819711943e-42!GO:0031974;membrane-enclosed lumen;9.82419819711943e-42!GO:0005634;nucleus;1.86251832308656e-41!GO:0016043;cellular component organization and biogenesis;4.23324943219345e-41!GO:0044428;nuclear part;9.76875225043314e-41!GO:0043170;macromolecule metabolic process;4.61635645932053e-40!GO:0033036;macromolecule localization;5.29387466202291e-38!GO:0015031;protein transport;7.15266337024396e-37!GO:0031090;organelle membrane;2.12485957633045e-36!GO:0008104;protein localization;1.08530047848296e-34!GO:0045184;establishment of protein localization;7.33484371228284e-34!GO:0043234;protein complex;1.40285433842951e-30!GO:0046907;intracellular transport;2.19475276701016e-30!GO:0016071;mRNA metabolic process;8.1135808683489e-30!GO:0031975;envelope;9.21740432924359e-30!GO:0031967;organelle envelope;1.69777262082348e-29!GO:0044429;mitochondrial part;1.75571394758682e-29!GO:0006396;RNA processing;3.65632120977578e-29!GO:0019538;protein metabolic process;3.56219848423916e-28!GO:0008380;RNA splicing;1.10277537226677e-26!GO:0005829;cytosol;1.12545664163187e-26!GO:0031981;nuclear lumen;1.79890825141539e-25!GO:0043283;biopolymer metabolic process;8.79285487005415e-25!GO:0044260;cellular macromolecule metabolic process;1.04207900392562e-24!GO:0006397;mRNA processing;4.35680677390597e-24!GO:0044267;cellular protein metabolic process;4.59836353378265e-24!GO:0006886;intracellular protein transport;4.20850513881476e-23!GO:0010467;gene expression;5.35922435214842e-23!GO:0005840;ribosome;2.85359128543662e-22!GO:0006412;translation;1.82305099966821e-21!GO:0051649;establishment of cellular localization;2.8574449699592e-21!GO:0005740;mitochondrial envelope;3.17727507972252e-21!GO:0051641;cellular localization;3.64884869401537e-21!GO:0006996;organelle organization and biogenesis;1.84455972111124e-20!GO:0031966;mitochondrial membrane;2.59359878994034e-20!GO:0019866;organelle inner membrane;7.67203501410436e-20!GO:0009058;biosynthetic process;2.16105549896081e-19!GO:0005743;mitochondrial inner membrane;1.37137937730087e-18!GO:0006119;oxidative phosphorylation;1.6818024857518e-18!GO:0016192;vesicle-mediated transport;1.96853667163755e-18!GO:0005681;spliceosome;2.01691775457383e-18!GO:0065003;macromolecular complex assembly;2.30037085971889e-18!GO:0003735;structural constituent of ribosome;2.28461609860936e-17!GO:0009059;macromolecule biosynthetic process;2.92389713545987e-17!GO:0005654;nucleoplasm;1.15218008766171e-16!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.59753905450256e-16!GO:0022607;cellular component assembly;3.72875255393724e-16!GO:0044249;cellular biosynthetic process;5.52804836434402e-16!GO:0033279;ribosomal subunit;2.17933100511242e-15!GO:0005794;Golgi apparatus;2.59451734587238e-15!GO:0000166;nucleotide binding;2.71457099876759e-15!GO:0044455;mitochondrial membrane part;7.05598587544792e-15!GO:0044451;nucleoplasm part;8.23565854662976e-15!GO:0016874;ligase activity;2.1835830522074e-14!GO:0006512;ubiquitin cycle;4.21950882634417e-14!GO:0006511;ubiquitin-dependent protein catabolic process;4.69108499388327e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;4.69464228059318e-14!GO:0019941;modification-dependent protein catabolic process;7.3800193098455e-14!GO:0043632;modification-dependent macromolecule catabolic process;7.3800193098455e-14!GO:0005746;mitochondrial respiratory chain;7.65080114946746e-14!GO:0044257;cellular protein catabolic process;7.70298158944673e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.87876410396531e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.1686920480134e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.03424704817999e-13!GO:0016462;pyrophosphatase activity;1.16886774249043e-13!GO:0008134;transcription factor binding;1.26005986051121e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.46024717925386e-13!GO:0012505;endomembrane system;2.33890013847051e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.92899615338585e-13!GO:0003954;NADH dehydrogenase activity;2.92899615338585e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.92899615338585e-13!GO:0044265;cellular macromolecule catabolic process;2.92899615338585e-13!GO:0048770;pigment granule;3.43823301981118e-13!GO:0042470;melanosome;3.43823301981118e-13!GO:0006457;protein folding;7.84910480302698e-13!GO:0017111;nucleoside-triphosphatase activity;1.09459715450296e-12!GO:0043285;biopolymer catabolic process;2.70388591436857e-12!GO:0005783;endoplasmic reticulum;3.12804256517843e-12!GO:0016070;RNA metabolic process;3.14900206334919e-12!GO:0044445;cytosolic part;3.73997419749862e-12!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.04682007987316e-11!GO:0043412;biopolymer modification;1.0886386998473e-11!GO:0006605;protein targeting;1.20745715180435e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.49499372220908e-11!GO:0045271;respiratory chain complex I;1.49499372220908e-11!GO:0005747;mitochondrial respiratory chain complex I;1.49499372220908e-11!GO:0022618;protein-RNA complex assembly;2.41202526491768e-11!GO:0043228;non-membrane-bound organelle;2.67909916288501e-11!GO:0043232;intracellular non-membrane-bound organelle;2.67909916288501e-11!GO:0042775;organelle ATP synthesis coupled electron transport;3.24291621921091e-11!GO:0042773;ATP synthesis coupled electron transport;3.24291621921091e-11!GO:0031980;mitochondrial lumen;3.44487332641897e-11!GO:0005759;mitochondrial matrix;3.44487332641897e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.57503034354965e-11!GO:0006464;protein modification process;4.96848501937575e-11!GO:0051082;unfolded protein binding;6.14800555176333e-11!GO:0030163;protein catabolic process;6.17783313123384e-11!GO:0044248;cellular catabolic process;1.10246312993881e-10!GO:0005768;endosome;1.59688819066206e-10!GO:0043687;post-translational protein modification;2.47562834758091e-10!GO:0048193;Golgi vesicle transport;3.19833636355099e-10!GO:0016604;nuclear body;3.60966840821441e-10!GO:0009057;macromolecule catabolic process;3.95646016204165e-10!GO:0031982;vesicle;4.10736350953834e-10!GO:0032553;ribonucleotide binding;4.61544600519839e-10!GO:0032555;purine ribonucleotide binding;4.61544600519839e-10!GO:0000502;proteasome complex (sensu Eukaryota);5.48181437385682e-10!GO:0003676;nucleic acid binding;6.08108702360895e-10!GO:0017076;purine nucleotide binding;6.64888203200783e-10!GO:0030695;GTPase regulator activity;9.42438410769982e-10!GO:0031410;cytoplasmic vesicle;1.54758880385656e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.5933636195968e-09!GO:0008565;protein transporter activity;1.68616269519437e-09!GO:0008135;translation factor activity, nucleic acid binding;1.71196852820164e-09!GO:0016607;nuclear speck;2.02761828368696e-09!GO:0031988;membrane-bound vesicle;2.59166929547447e-09!GO:0005730;nucleolus;2.90974224264255e-09!GO:0015935;small ribosomal subunit;4.10921819837343e-09!GO:0008092;cytoskeletal protein binding;4.25269310050904e-09!GO:0005635;nuclear envelope;4.56304195802059e-09!GO:0048523;negative regulation of cellular process;4.70152103418063e-09!GO:0019899;enzyme binding;5.40712196960446e-09!GO:0016023;cytoplasmic membrane-bound vesicle;8.17136525611445e-09!GO:0031252;leading edge;9.63445469335637e-09!GO:0006461;protein complex assembly;1.00148541907101e-08!GO:0012501;programmed cell death;1.07647617229161e-08!GO:0006915;apoptosis;1.11751589644353e-08!GO:0050794;regulation of cellular process;1.11841171299113e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.52526966973868e-08!GO:0000375;RNA splicing, via transesterification reactions;1.52526966973868e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.52526966973868e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.56658817314435e-08!GO:0030036;actin cytoskeleton organization and biogenesis;2.01209328464362e-08!GO:0031965;nuclear membrane;2.45070576040483e-08!GO:0008219;cell death;2.47793100064068e-08!GO:0016265;death;2.47793100064068e-08!GO:0006446;regulation of translational initiation;4.89566118765885e-08!GO:0007264;small GTPase mediated signal transduction;6.18401929198209e-08!GO:0008639;small protein conjugating enzyme activity;6.62147562675079e-08!GO:0044432;endoplasmic reticulum part;8.05494139320107e-08!GO:0019787;small conjugating protein ligase activity;8.39776459714091e-08!GO:0006913;nucleocytoplasmic transport;8.85330904255179e-08!GO:0004842;ubiquitin-protein ligase activity;9.24716585531095e-08!GO:0003712;transcription cofactor activity;1.31649438260774e-07!GO:0016044;membrane organization and biogenesis;1.3414387309844e-07!GO:0051169;nuclear transport;1.48440630070321e-07!GO:0048519;negative regulation of biological process;1.54661167930725e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.57414031983797e-07!GO:0050789;regulation of biological process;1.70543307044962e-07!GO:0003743;translation initiation factor activity;1.85679791757466e-07!GO:0030029;actin filament-based process;1.90772438136057e-07!GO:0051186;cofactor metabolic process;1.98168468695434e-07!GO:0006793;phosphorus metabolic process;2.19333693745112e-07!GO:0006796;phosphate metabolic process;2.19333693745112e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.30571386542213e-07!GO:0005083;small GTPase regulator activity;2.32748696921411e-07!GO:0003924;GTPase activity;2.55473407165118e-07!GO:0006413;translational initiation;2.78370681816292e-07!GO:0015934;large ribosomal subunit;3.36393306412245e-07!GO:0007010;cytoskeleton organization and biogenesis;4.02373883641411e-07!GO:0005525;GTP binding;4.02373883641411e-07!GO:0019829;cation-transporting ATPase activity;4.20420148290213e-07!GO:0016564;transcription repressor activity;4.52378563736355e-07!GO:0016881;acid-amino acid ligase activity;4.89929166858451e-07!GO:0051246;regulation of protein metabolic process;4.98533168760668e-07!GO:0005773;vacuole;7.08878558282031e-07!GO:0006259;DNA metabolic process;7.5090852064361e-07!GO:0009056;catabolic process;1.01229696010456e-06!GO:0015986;ATP synthesis coupled proton transport;1.07630488091285e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.07630488091285e-06!GO:0045786;negative regulation of progression through cell cycle;1.26729956152226e-06!GO:0005770;late endosome;1.33451922102032e-06!GO:0017038;protein import;1.57415503296171e-06!GO:0005769;early endosome;1.84346330059608e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.84346330059608e-06!GO:0015631;tubulin binding;1.93583969397065e-06!GO:0044440;endosomal part;1.9911282460413e-06!GO:0010008;endosome membrane;1.9911282460413e-06!GO:0005761;mitochondrial ribosome;2.30249568527603e-06!GO:0000313;organellar ribosome;2.30249568527603e-06!GO:0009055;electron carrier activity;2.87397415208153e-06!GO:0016568;chromatin modification;3.06589424598981e-06!GO:0006366;transcription from RNA polymerase II promoter;3.48180135392663e-06!GO:0005096;GTPase activator activity;3.88360924319421e-06!GO:0016887;ATPase activity;3.95398463572171e-06!GO:0044453;nuclear membrane part;4.34890760015624e-06!GO:0008047;enzyme activator activity;4.68433332429449e-06!GO:0044431;Golgi apparatus part;4.68433332429449e-06!GO:0032561;guanyl ribonucleotide binding;4.9519522184696e-06!GO:0019001;guanyl nucleotide binding;4.9519522184696e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.98079995728113e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.98079995728113e-06!GO:0000323;lytic vacuole;5.95942228398189e-06!GO:0005764;lysosome;5.95942228398189e-06!GO:0032559;adenyl ribonucleotide binding;7.00095410821997e-06!GO:0005789;endoplasmic reticulum membrane;7.12159508128363e-06!GO:0016469;proton-transporting two-sector ATPase complex;7.53284563963522e-06!GO:0046034;ATP metabolic process;8.36115473728285e-06!GO:0005524;ATP binding;9.02782300215211e-06!GO:0006163;purine nucleotide metabolic process;1.03593776028564e-05!GO:0030554;adenyl nucleotide binding;1.03593776028564e-05!GO:0009150;purine ribonucleotide metabolic process;1.18722765932795e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;1.21021883663887e-05!GO:0042623;ATPase activity, coupled;1.21592452205519e-05!GO:0009060;aerobic respiration;1.53371970005453e-05!GO:0045333;cellular respiration;1.83849298504589e-05!GO:0006164;purine nucleotide biosynthetic process;2.20208924850711e-05!GO:0006754;ATP biosynthetic process;2.38667936945933e-05!GO:0006753;nucleoside phosphate metabolic process;2.38667936945933e-05!GO:0008287;protein serine/threonine phosphatase complex;2.40247279513692e-05!GO:0048471;perinuclear region of cytoplasm;2.41511298539433e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.43175431737617e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.73204148875489e-05!GO:0009144;purine nucleoside triphosphate metabolic process;2.73204148875489e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.83155781268084e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.88515682507837e-05!GO:0009259;ribonucleotide metabolic process;2.9987471285047e-05!GO:0048475;coated membrane;3.4702812933174e-05!GO:0030117;membrane coat;3.4702812933174e-05!GO:0006323;DNA packaging;3.53870217426991e-05!GO:0005793;ER-Golgi intermediate compartment;3.65215688536958e-05!GO:0045259;proton-transporting ATP synthase complex;4.14520974870643e-05!GO:0016310;phosphorylation;4.27899099306153e-05!GO:0006403;RNA localization;4.32703406935835e-05!GO:0006732;coenzyme metabolic process;4.36967500134404e-05!GO:0050657;nucleic acid transport;4.36967500134404e-05!GO:0051236;establishment of RNA localization;4.36967500134404e-05!GO:0050658;RNA transport;4.36967500134404e-05!GO:0008017;microtubule binding;4.57882794991266e-05!GO:0006897;endocytosis;4.65361443786595e-05!GO:0010324;membrane invagination;4.65361443786595e-05!GO:0009141;nucleoside triphosphate metabolic process;5.02807523937542e-05!GO:0005643;nuclear pore;5.02807523937542e-05!GO:0003714;transcription corepressor activity;5.1431510293916e-05!GO:0015630;microtubule cytoskeleton;5.64154164544906e-05!GO:0003779;actin binding;5.64154164544906e-05!GO:0006099;tricarboxylic acid cycle;6.02724121765931e-05!GO:0046356;acetyl-CoA catabolic process;6.02724121765931e-05!GO:0030027;lamellipodium;7.24743876320422e-05!GO:0051128;regulation of cellular component organization and biogenesis;7.97973216142342e-05!GO:0032446;protein modification by small protein conjugation;8.23611819671006e-05!GO:0051170;nuclear import;8.77051645531334e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.48638153702671e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.48638153702671e-05!GO:0000245;spliceosome assembly;9.82775572434347e-05!GO:0009142;nucleoside triphosphate biosynthetic process;0.000101260671009033!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000101260671009033!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000104711539459406!GO:0043069;negative regulation of programmed cell death;0.000107289443315806!GO:0006606;protein import into nucleus;0.000110133415798674!GO:0043066;negative regulation of apoptosis;0.000119049447222257!GO:0007265;Ras protein signal transduction;0.000119323610383173!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000121267668288023!GO:0006613;cotranslational protein targeting to membrane;0.000123388598764638!GO:0000151;ubiquitin ligase complex;0.000124687534352201!GO:0009260;ribonucleotide biosynthetic process;0.000126425075767114!GO:0001726;ruffle;0.000128232018390649!GO:0006888;ER to Golgi vesicle-mediated transport;0.000143277469169646!GO:0009892;negative regulation of metabolic process;0.000144846400013935!GO:0009109;coenzyme catabolic process;0.000149877994241174!GO:0065007;biological regulation;0.000152301455638342!GO:0031072;heat shock protein binding;0.000156374783318864!GO:0005905;coated pit;0.000160485122360142!GO:0016567;protein ubiquitination;0.000160485872422535!GO:0006916;anti-apoptosis;0.00016432598775644!GO:0031901;early endosome membrane;0.000175813647210803!GO:0016197;endosome transport;0.000196029517256822!GO:0030120;vesicle coat;0.000197793164370523!GO:0030662;coated vesicle membrane;0.000197793164370523!GO:0000139;Golgi membrane;0.000198381162220632!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000199678695699056!GO:0051187;cofactor catabolic process;0.000204509462771052!GO:0006084;acetyl-CoA metabolic process;0.00020929680539724!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000209332024656326!GO:0007049;cell cycle;0.000218522894185506!GO:0051726;regulation of cell cycle;0.000230551014526462!GO:0030867;rough endoplasmic reticulum membrane;0.00023822048898559!GO:0000074;regulation of progression through cell cycle;0.00025066690182945!GO:0008654;phospholipid biosynthetic process;0.000258726450659808!GO:0043566;structure-specific DNA binding;0.0002939844760061!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000324629081807146!GO:0051188;cofactor biosynthetic process;0.000326769267384161!GO:0031324;negative regulation of cellular metabolic process;0.000329548323373593!GO:0048468;cell development;0.000349842847517622!GO:0007272;ensheathment of neurons;0.000395675321839267!GO:0008366;axon ensheathment;0.000395675321839267!GO:0030532;small nuclear ribonucleoprotein complex;0.000396260305967926!GO:0045045;secretory pathway;0.000396260305967926!GO:0005798;Golgi-associated vesicle;0.000446789965969181!GO:0005839;proteasome core complex (sensu Eukaryota);0.000453585711644061!GO:0016481;negative regulation of transcription;0.000455350668465898!GO:0043623;cellular protein complex assembly;0.000459609041830745!GO:0000159;protein phosphatase type 2A complex;0.000470177215624815!GO:0051028;mRNA transport;0.00052331022391753!GO:0009966;regulation of signal transduction;0.000586181690289772!GO:0003713;transcription coactivator activity;0.000602712412877333!GO:0042802;identical protein binding;0.000602876446037746!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000638030927630997!GO:0015399;primary active transmembrane transporter activity;0.000638030927630997!GO:0008361;regulation of cell size;0.000638030927630997!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000685957363170132!GO:0004812;aminoacyl-tRNA ligase activity;0.000685957363170132!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000685957363170132!GO:0042981;regulation of apoptosis;0.000691960505646615!GO:0019222;regulation of metabolic process;0.000735587745294736!GO:0016791;phosphoric monoester hydrolase activity;0.000765420546694428!GO:0006402;mRNA catabolic process;0.000787528349537895!GO:0008286;insulin receptor signaling pathway;0.000831588724271414!GO:0005791;rough endoplasmic reticulum;0.000864824387487109!GO:0003724;RNA helicase activity;0.000870873079167152!GO:0005874;microtubule;0.000878205773716337!GO:0043067;regulation of programmed cell death;0.000880413248168772!GO:0019867;outer membrane;0.000902440075755729!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000921280765126149!GO:0006612;protein targeting to membrane;0.000974925791328461!GO:0031968;organelle outer membrane;0.00100124411897882!GO:0003729;mRNA binding;0.00101454317824009!GO:0005741;mitochondrial outer membrane;0.00106718973454478!GO:0065002;intracellular protein transport across a membrane;0.00107103217861251!GO:0043038;amino acid activation;0.00115389083388619!GO:0006418;tRNA aminoacylation for protein translation;0.00115389083388619!GO:0043039;tRNA aminoacylation;0.00115389083388619!GO:0051276;chromosome organization and biogenesis;0.0011694578748417!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00117947542601783!GO:0030133;transport vesicle;0.00118133231959791!GO:0007243;protein kinase cascade;0.00118353566836582!GO:0008026;ATP-dependent helicase activity;0.00118353566836582!GO:0008601;protein phosphatase type 2A regulator activity;0.0012167297694551!GO:0045892;negative regulation of transcription, DNA-dependent;0.00123294719293669!GO:0042254;ribosome biogenesis and assembly;0.00124747351590584!GO:0004386;helicase activity;0.00128220265469452!GO:0001508;regulation of action potential;0.00129994835198525!GO:0051789;response to protein stimulus;0.00129999803812735!GO:0006986;response to unfolded protein;0.00129999803812735!GO:0006650;glycerophospholipid metabolic process;0.00138387283496872!GO:0019902;phosphatase binding;0.00149314996995408!GO:0007242;intracellular signaling cascade;0.00149602423769247!GO:0031902;late endosome membrane;0.00152125798550966!GO:0016049;cell growth;0.00156203537041079!GO:0000902;cell morphogenesis;0.00157535195724066!GO:0032989;cellular structure morphogenesis;0.00157535195724066!GO:0004721;phosphoprotein phosphatase activity;0.00168113600292478!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00173413059339772!GO:0006401;RNA catabolic process;0.00180508525372498!GO:0043492;ATPase activity, coupled to movement of substances;0.00187161752761069!GO:0007019;microtubule depolymerization;0.00191362102767664!GO:0046467;membrane lipid biosynthetic process;0.00201204493343204!GO:0006752;group transfer coenzyme metabolic process;0.00202923234131178!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00203812345273301!GO:0003697;single-stranded DNA binding;0.00206015348667458!GO:0043209;myelin sheath;0.00208674903688278!GO:0051087;chaperone binding;0.00212041585388467!GO:0046930;pore complex;0.00213844668328504!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00219067054945259!GO:0005774;vacuolar membrane;0.00220223221857193!GO:0004298;threonine endopeptidase activity;0.0023361296872196!GO:0006607;NLS-bearing substrate import into nucleus;0.00234081313017475!GO:0005099;Ras GTPase activator activity;0.00234178890949028!GO:0006974;response to DNA damage stimulus;0.00239910613637624!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00239910613637624!GO:0007050;cell cycle arrest;0.00245719487607015!GO:0022890;inorganic cation transmembrane transporter activity;0.00252723451862715!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00263562162487687!GO:0016311;dephosphorylation;0.00267400590393604!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00281242995456606!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00294687552915763!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00318632817913477!GO:0009108;coenzyme biosynthetic process;0.00324143934105181!GO:0030041;actin filament polymerization;0.00328527594644451!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00328848977601493!GO:0008154;actin polymerization and/or depolymerization;0.0034095379937255!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00346863687754501!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00346863687754501!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00346863687754501!GO:0051056;regulation of small GTPase mediated signal transduction;0.00358776814292055!GO:0001666;response to hypoxia;0.00366212822951499!GO:0005085;guanyl-nucleotide exchange factor activity;0.00429997706107575!GO:0005100;Rho GTPase activator activity;0.00447289681893682!GO:0005765;lysosomal membrane;0.00448881373412994!GO:0051920;peroxiredoxin activity;0.0045007072552081!GO:0051168;nuclear export;0.00479313482006713!GO:0004722;protein serine/threonine phosphatase activity;0.00488722139679128!GO:0006643;membrane lipid metabolic process;0.00488722139679128!GO:0019783;small conjugating protein-specific protease activity;0.00500976704683326!GO:0005885;Arp2/3 protein complex;0.00523187896014822!GO:0008139;nuclear localization sequence binding;0.00524389239092653!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00530673081898258!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00547655000588759!GO:0004667;prostaglandin-D synthase activity;0.00547655000588759!GO:0050802;circadian sleep/wake cycle, sleep;0.00547655000588759!GO:0022410;circadian sleep/wake cycle process;0.00547655000588759!GO:0042749;regulation of circadian sleep/wake cycle;0.00547655000588759!GO:0007034;vacuolar transport;0.00550251964712061!GO:0043021;ribonucleoprotein binding;0.00550830461573701!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00561540829888013!GO:0016363;nuclear matrix;0.00567624281895772!GO:0048487;beta-tubulin binding;0.00591439415602128!GO:0050811;GABA receptor binding;0.00591439415602128!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00594346054736699!GO:0004843;ubiquitin-specific protease activity;0.00604097667030724!GO:0031114;regulation of microtubule depolymerization;0.006047553105097!GO:0007026;negative regulation of microtubule depolymerization;0.006047553105097!GO:0032940;secretion by cell;0.00622148972169298!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00660383058835157!GO:0019904;protein domain specific binding;0.00689023019690788!GO:0006470;protein amino acid dephosphorylation;0.00689023019690788!GO:0005938;cell cortex;0.00689023019690788!GO:0007005;mitochondrion organization and biogenesis;0.00697411973782355!GO:0019208;phosphatase regulator activity;0.00710602309198353!GO:0005667;transcription factor complex;0.00811042605919581!GO:0008186;RNA-dependent ATPase activity;0.00820107346957441!GO:0005813;centrosome;0.00825539830540058!GO:0044437;vacuolar part;0.00825634777789343!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00852186926135765!GO:0008610;lipid biosynthetic process;0.00856687534764714!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00868573900112493!GO:0006891;intra-Golgi vesicle-mediated transport;0.00879652942564108!GO:0004221;ubiquitin thiolesterase activity;0.00889714676676429!GO:0048500;signal recognition particle;0.00910703126246367!GO:0006399;tRNA metabolic process;0.00945923844314518!GO:0000059;protein import into nucleus, docking;0.00948587818713084!GO:0005788;endoplasmic reticulum lumen;0.00949967674913948!GO:0030118;clathrin coat;0.00980278204133581!GO:0015980;energy derivation by oxidation of organic compounds;0.010366080482615!GO:0005875;microtubule associated complex;0.0105428239658244!GO:0022402;cell cycle process;0.0112649828988522!GO:0001558;regulation of cell growth;0.0113220433701181!GO:0048154;S100 beta binding;0.0115682482404931!GO:0043488;regulation of mRNA stability;0.0116543272123726!GO:0043487;regulation of RNA stability;0.0116543272123726!GO:0030384;phosphoinositide metabolic process;0.012183131795522!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0125804038983097!GO:0005815;microtubule organizing center;0.0128778289589471!GO:0051427;hormone receptor binding;0.0128994159924005!GO:0009117;nucleotide metabolic process;0.0129412715267506!GO:0043087;regulation of GTPase activity;0.0129437852576957!GO:0046474;glycerophospholipid biosynthetic process;0.0134375728277326!GO:0035035;histone acetyltransferase binding;0.0137078379179744!GO:0043681;protein import into mitochondrion;0.0139046468889427!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0139839623301098!GO:0042552;myelination;0.0143350376640167!GO:0003690;double-stranded DNA binding;0.0149289192275133!GO:0001887;selenium metabolic process;0.0159080738266259!GO:0006364;rRNA processing;0.0163533476925648!GO:0006383;transcription from RNA polymerase III promoter;0.0169893545920375!GO:0030742;GTP-dependent protein binding;0.0171150279657032!GO:0042026;protein refolding;0.0173635805813816!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0175041148495674!GO:0030139;endocytic vesicle;0.0175465343655317!GO:0016563;transcription activator activity;0.0175630722587526!GO:0006810;transport;0.0180490758085766!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0183552629602536!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0185349260683497!GO:0000314;organellar small ribosomal subunit;0.0193791847116204!GO:0005763;mitochondrial small ribosomal subunit;0.0193791847116204!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0198281385830324!GO:0004004;ATP-dependent RNA helicase activity;0.0207933065400793!GO:0005869;dynactin complex;0.0208167169884982!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0208427689357788!GO:0045047;protein targeting to ER;0.0208427689357788!GO:0000118;histone deacetylase complex;0.0208680336994901!GO:0051539;4 iron, 4 sulfur cluster binding;0.0211448239674038!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0211814513630252!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0211814513630252!GO:0009066;aspartate family amino acid metabolic process;0.0215819276932921!GO:0035257;nuclear hormone receptor binding;0.0215819276932921!GO:0019888;protein phosphatase regulator activity;0.0217813447222142!GO:0006644;phospholipid metabolic process;0.0221054207845255!GO:0016072;rRNA metabolic process;0.0221311863309594!GO:0046983;protein dimerization activity;0.0221940253990606!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0229330573580564!GO:0008312;7S RNA binding;0.0229461015730299!GO:0051252;regulation of RNA metabolic process;0.0229899770535845!GO:0031109;microtubule polymerization or depolymerization;0.023161149622414!GO:0007041;lysosomal transport;0.0232108171175697!GO:0030258;lipid modification;0.0234263139112656!GO:0016859;cis-trans isomerase activity;0.0240354073468806!GO:0046489;phosphoinositide biosynthetic process;0.0241082804153687!GO:0005048;signal sequence binding;0.0242162635424486!GO:0007006;mitochondrial membrane organization and biogenesis;0.0244514018838773!GO:0051261;protein depolymerization;0.0246379486623028!GO:0046578;regulation of Ras protein signal transduction;0.0248850863989457!GO:0015682;ferric iron transport;0.0249684276247641!GO:0015091;ferric iron transmembrane transporter activity;0.0249684276247641!GO:0031643;positive regulation of myelination;0.0249684276247641!GO:0033116;ER-Golgi intermediate compartment membrane;0.0250516740146866!GO:0006414;translational elongation;0.0255107470500701!GO:0007266;Rho protein signal transduction;0.0262500946170741!GO:0030132;clathrin coat of coated pit;0.0263893971741722!GO:0033673;negative regulation of kinase activity;0.0263893971741722!GO:0006469;negative regulation of protein kinase activity;0.0263893971741722!GO:0016126;sterol biosynthetic process;0.0263893971741722!GO:0006338;chromatin remodeling;0.0266482232281834!GO:0030880;RNA polymerase complex;0.0270936199054393!GO:0051287;NAD binding;0.0271630435320512!GO:0051540;metal cluster binding;0.0280322365026742!GO:0051536;iron-sulfur cluster binding;0.0280322365026742!GO:0006516;glycoprotein catabolic process;0.0280792472145057!GO:0030663;COPI coated vesicle membrane;0.0287244261576274!GO:0030126;COPI vesicle coat;0.0287244261576274!GO:0019903;protein phosphatase binding;0.0293742399412842!GO:0019911;structural constituent of myelin sheath;0.0299154159354341!GO:0044448;cell cortex part;0.0312176440008133!GO:0051348;negative regulation of transferase activity;0.0312240933193105!GO:0031124;mRNA 3'-end processing;0.0316763696149707!GO:0016491;oxidoreductase activity;0.032630438162421!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0332520073560911!GO:0006611;protein export from nucleus;0.0333112142169226!GO:0006281;DNA repair;0.0339085616017763!GO:0031323;regulation of cellular metabolic process;0.0339085616017763!GO:0046839;phospholipid dephosphorylation;0.0340305537591424!GO:0045947;negative regulation of translational initiation;0.0341138939399863!GO:0030658;transport vesicle membrane;0.0341948954071225!GO:0017166;vinculin binding;0.0344457543292228!GO:0032366;intracellular sterol transport;0.0344457543292228!GO:0032367;intracellular cholesterol transport;0.0344457543292228!GO:0032365;intracellular lipid transport;0.0344457543292228!GO:0050749;apolipoprotein E receptor binding;0.0344655534178058!GO:0006333;chromatin assembly or disassembly;0.0344655534178058!GO:0008234;cysteine-type peptidase activity;0.0346277192057937!GO:0006091;generation of precursor metabolites and energy;0.0349886098036331!GO:0065009;regulation of a molecular function;0.0355541552968705!GO:0022406;membrane docking;0.035864685711934!GO:0048278;vesicle docking;0.035864685711934!GO:0007033;vacuole organization and biogenesis;0.0367735946215138!GO:0006376;mRNA splice site selection;0.0367735946215138!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0367735946215138!GO:0004860;protein kinase inhibitor activity;0.036832379556688!GO:0042158;lipoprotein biosynthetic process;0.037275622286088!GO:0006672;ceramide metabolic process;0.037275622286088!GO:0016790;thiolester hydrolase activity;0.0375516218645642!GO:0016050;vesicle organization and biogenesis;0.0375820907087748!GO:0042578;phosphoric ester hydrolase activity;0.0382486933066801!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0383335793076437!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.038485205733491!GO:0000096;sulfur amino acid metabolic process;0.0385201712236873!GO:0016740;transferase activity;0.0386630156016076!GO:0006378;mRNA polyadenylation;0.0388453358904397!GO:0046519;sphingoid metabolic process;0.0389533055224633!GO:0000209;protein polyubiquitination;0.038989355960489!GO:0040008;regulation of growth;0.0398787193708433!GO:0003702;RNA polymerase II transcription factor activity;0.040021129445234!GO:0006633;fatty acid biosynthetic process;0.0406477598820151!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0409628610832319!GO:0055083;monovalent inorganic anion homeostasis;0.0409628610832319!GO:0055064;chloride ion homeostasis;0.0409628610832319!GO:0030644;cellular chloride ion homeostasis;0.0409628610832319!GO:0005762;mitochondrial large ribosomal subunit;0.0411506801674738!GO:0000315;organellar large ribosomal subunit;0.0411506801674738!GO:0016408;C-acyltransferase activity;0.0415792175972705!GO:0019717;synaptosome;0.0416403926914904!GO:0051179;localization;0.0429010631384222!GO:0006509;membrane protein ectodomain proteolysis;0.0430753281759053!GO:0033619;membrane protein proteolysis;0.0430753281759053!GO:0008270;zinc ion binding;0.0439781808638928!GO:0003711;transcription elongation regulator activity;0.0439781808638928!GO:0016787;hydrolase activity;0.0444941263765612!GO:0008022;protein C-terminus binding;0.0447343012531971!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0459305379767944!GO:0004113;2',3'-cyclic-nucleotide 3'-phosphodiesterase activity;0.046030459965978!GO:0009214;cyclic nucleotide catabolic process;0.046030459965978!GO:0006904;vesicle docking during exocytosis;0.0463443060159522!GO:0016579;protein deubiquitination;0.0472773086026933!GO:0009719;response to endogenous stimulus;0.0474479668299737!GO:0006665;sphingolipid metabolic process;0.0475473886845785!GO:0030137;COPI-coated vesicle;0.0480381899474656!GO:0030660;Golgi-associated vesicle membrane;0.0483387191959628!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0484337242012775!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0487236195745576!GO:0005092;GDP-dissociation inhibitor activity;0.049004861022599!GO:0005868;cytoplasmic dynein complex;0.0492524699647542!GO:0051098;regulation of binding;0.0493640737681402!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0493773189089733!GO:0010257;NADH dehydrogenase complex assembly;0.0493773189089733!GO:0033108;mitochondrial respiratory chain complex assembly;0.0493773189089733!GO:0004155;6,7-dihydropteridine reductase activity;0.0495919710384693!GO:0051066;dihydrobiopterin metabolic process;0.0495919710384693!GO:0012506;vesicle membrane;0.0496590180848399 | |||
|sample_id=10158 | |sample_id=10158 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=substantia nigra | |sample_tissue=substantia nigra | ||
|top_motifs=SOX2:3.85610762072;SOX5:3.52919316876;GATA4:3.3376695912;NFIX:3.13282808162;SOX{8,9,10}:3.1056781248;FOXP1:2.90297030849;NKX3-2:2.50740832489;NR3C1:2.43125481599;AR:2.37718767125;TOPORS:2.36995194371;FOXO1,3,4:2.34961395178;BPTF:2.34746946083;POU6F1:2.24781869623;EP300:2.09220713943;RREB1:2.00946677587;FOXD3:2.00274731465;CUX2:1.97064252262;ZFP161:1.91885672305;ZBTB16:1.82118265612;XBP1:1.77867354126;SOX17:1.7673074702;HOX{A6,A7,B6,B7}:1.75934525525;MYFfamily:1.71503955764;FOXQ1:1.70431603023;TGIF1:1.68745229643;FOXP3:1.68381088216;ZNF384:1.63453235218;FOX{D1,D2}:1.61190673323;MED-1{core}:1.58746424603;RBPJ:1.57169808804;RFX2..5_RFXANK_RFXAP:1.5623922071;HIC1:1.53299892477;NHLH1,2:1.51787911681;REST:1.50033799233;MYBL2:1.49127210415;PAX6:1.48710673602;ATF2:1.48019991835;PATZ1:1.47188769689;GTF2I:1.4690835201;ARID5B:1.45841341072;LMO2:1.36103851834;PITX1..3:1.35792383885;ZBTB6:1.35454289761;TLX2:1.33345833319;FOX{I1,J2}:1.32450922202;SREBF1,2:1.31788841255;PRDM1:1.25226724706;MAFB:1.24263723933;NKX6-1,2:1.21625505036;OCT4_SOX2{dimer}:1.21577934921;HBP1_HMGB_SSRP1_UBTF:1.21346514076;MAZ:1.19010021713;NKX2-2,8:1.17528160805;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.17219668827;PAX4:1.16819211582;TFAP2B:1.16194190178;SP1:1.14466985464;STAT2,4,6:1.13154898652;ZNF143:1.12911893637;FOX{F1,F2,J1}:1.10381225965;MTF1:1.08547359472;T:1.07537280138;IKZF2:1.07210221904;NRF1:1.05791142538;MZF1:1.03250308516;STAT1,3:1.03072699151;TLX1..3_NFIC{dimer}:1.00707419614;MTE{core}:0.990833678447;TFAP2{A,C}:0.975445221437;DBP:0.964315897569;SPZ1:0.915359020717;POU3F1..4:0.911583622974;FOXM1:0.90369164041;SMAD1..7,9:0.884129477308;KLF4:0.845458713952;PRRX1,2:0.7773404609;EGR1..3:0.773052348494;PDX1:0.749053239153;ALX1:0.659223406827;IRF7:0.650721544067;NANOG:0.648598870388;ZNF423:0.625970247681;LEF1_TCF7_TCF7L1,2:0.622803152904;JUN:0.585964328607;BREu{core}:0.573305457909;GTF2A1,2:0.565324593553;POU5F1:0.564466362662;CDX1,2,4:0.563228378254;RFX1:0.491712982251;ZIC1..3:0.489442951937;ONECUT1,2:0.461784764276;EBF1:0.399241987057;PAX5:0.39400407068;HSF1,2:0.371058686067;AIRE:0.340646446486;FOXA2:0.330600582191;CREB1:0.325212787347;GFI1B:0.29854600587;HOX{A4,D4}:0.296191377074;TFCP2:0.286516448438;NFY{A,B,C}:0.279271378369;NKX3-1:0.276575710662;GCM1,2:0.256157294486;IRF1,2:0.217058667585;CDC5L:0.206926437157;HMX1:0.196338842965;TEF:0.191608072079;ESRRA:0.17342539056;CRX:0.164549862054;YY1:0.114652621232;NFATC1..3:0.102151106446;GZF1:0.101150971989;POU1F1:0.0981228676204;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0654976296068;HOXA9_MEIS1:0.0643161058587;NKX2-1,4:0.0443017235849;HAND1,2:0.0416379795464;TFDP1:0.0338778596889;EVI1:-0.0312060859588;FOXL1:-0.034686622407;ZNF238:-0.0569428730272;HMGA1,2:-0.0920766921408;PAX2:-0.100294688744;GFI1:-0.104483097525;NFIL3:-0.120247967432;HNF4A_NR2F1,2:-0.121751696768;ALX4:-0.155827282718;SPI1:-0.187894092122;ATF5_CREB3:-0.188287858187;VSX1,2:-0.194394786034;DMAP1_NCOR{1,2}_SMARC:-0.196071961855;RXR{A,B,G}:-0.222169105319;NR5A1,2:-0.224164160933;RORA:-0.245389717941;UFEwm:-0.247665867583;MEF2{A,B,C,D}:-0.253192300289;ETS1,2:-0.259164505615;TFAP4:-0.265973072494;HIF1A:-0.277966266255;SPIB:-0.279143161425;FOXN1:-0.332441719492;ELF1,2,4:-0.370526473009;NANOG{mouse}:-0.385895954174;XCPE1{core}:-0.396851247441;PBX1:-0.399100703423;AHR_ARNT_ARNT2:-0.417839128657;CEBPA,B_DDIT3:-0.417976243416;bHLH_family:-0.421041005946;NFE2L2:-0.43774257864;IKZF1:-0.461429646369;TP53:-0.473600879654;LHX3,4:-0.487518845126;ZEB1:-0.501220822292;GATA6:-0.536127539638;ATF6:-0.548015927352;NR6A1:-0.56659099454;NFE2L1:-0.596463241955;ATF4:-0.607428104506;MYOD1:-0.674867492033;NFE2:-0.676095193845;ELK1,4_GABP{A,B1}:-0.694249413844;HLF:-0.729733582088;TEAD1:-0.745723422309;TAL1_TCF{3,4,12}:-0.75371486531;NKX2-3_NKX2-5:-0.764649717003;TBP:-0.78291950726;NR1H4:-0.844416624045;HNF1A:-0.849791719591;SNAI1..3:-0.893344943865;ADNP_IRX_SIX_ZHX:-0.899238172319;TBX4,5:-0.916123236367;NFKB1_REL_RELA:-0.982473421663;FOSL2:-1.01780430671;E2F1..5:-1.02007202174;MYB:-1.03332543707;RUNX1..3:-1.03994272886;BACH2:-1.07259477106;SRF:-1.07337765897;FOS_FOS{B,L1}_JUN{B,D}:-1.09896313639;STAT5{A,B}:-1.3213587824;PAX1,9:-1.37313906692;ESR1:-1.37539714085;PAX8:-1.41716830294;POU2F1..3:-1.44349690846;RXRA_VDR{dimer}:-1.48908057489;HES1:-1.51626896398;PAX3,7:-1.58444353231;ZNF148:-1.61177514066;GLI1..3:-1.63986461519;EN1,2:-1.69881416792;PPARG:-2.39880001041;HOX{A5,B5}:-2.98038280024 | |top_motifs=SOX2:3.85610762072;SOX5:3.52919316876;GATA4:3.3376695912;NFIX:3.13282808162;SOX{8,9,10}:3.1056781248;FOXP1:2.90297030849;NKX3-2:2.50740832489;NR3C1:2.43125481599;AR:2.37718767125;TOPORS:2.36995194371;FOXO1,3,4:2.34961395178;BPTF:2.34746946083;POU6F1:2.24781869623;EP300:2.09220713943;RREB1:2.00946677587;FOXD3:2.00274731465;CUX2:1.97064252262;ZFP161:1.91885672305;ZBTB16:1.82118265612;XBP1:1.77867354126;SOX17:1.7673074702;HOX{A6,A7,B6,B7}:1.75934525525;MYFfamily:1.71503955764;FOXQ1:1.70431603023;TGIF1:1.68745229643;FOXP3:1.68381088216;ZNF384:1.63453235218;FOX{D1,D2}:1.61190673323;MED-1{core}:1.58746424603;RBPJ:1.57169808804;RFX2..5_RFXANK_RFXAP:1.5623922071;HIC1:1.53299892477;NHLH1,2:1.51787911681;REST:1.50033799233;MYBL2:1.49127210415;PAX6:1.48710673602;ATF2:1.48019991835;PATZ1:1.47188769689;GTF2I:1.4690835201;ARID5B:1.45841341072;LMO2:1.36103851834;PITX1..3:1.35792383885;ZBTB6:1.35454289761;TLX2:1.33345833319;FOX{I1,J2}:1.32450922202;SREBF1,2:1.31788841255;PRDM1:1.25226724706;MAFB:1.24263723933;NKX6-1,2:1.21625505036;OCT4_SOX2{dimer}:1.21577934921;HBP1_HMGB_SSRP1_UBTF:1.21346514076;MAZ:1.19010021713;NKX2-2,8:1.17528160805;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.17219668827;PAX4:1.16819211582;TFAP2B:1.16194190178;SP1:1.14466985464;STAT2,4,6:1.13154898652;ZNF143:1.12911893637;FOX{F1,F2,J1}:1.10381225965;MTF1:1.08547359472;T:1.07537280138;IKZF2:1.07210221904;NRF1:1.05791142538;MZF1:1.03250308516;STAT1,3:1.03072699151;TLX1..3_NFIC{dimer}:1.00707419614;MTE{core}:0.990833678447;TFAP2{A,C}:0.975445221437;DBP:0.964315897569;SPZ1:0.915359020717;POU3F1..4:0.911583622974;FOXM1:0.90369164041;SMAD1..7,9:0.884129477308;KLF4:0.845458713952;PRRX1,2:0.7773404609;EGR1..3:0.773052348494;PDX1:0.749053239153;ALX1:0.659223406827;IRF7:0.650721544067;NANOG:0.648598870388;ZNF423:0.625970247681;LEF1_TCF7_TCF7L1,2:0.622803152904;JUN:0.585964328607;BREu{core}:0.573305457909;GTF2A1,2:0.565324593553;POU5F1:0.564466362662;CDX1,2,4:0.563228378254;RFX1:0.491712982251;ZIC1..3:0.489442951937;ONECUT1,2:0.461784764276;EBF1:0.399241987057;PAX5:0.39400407068;HSF1,2:0.371058686067;AIRE:0.340646446486;FOXA2:0.330600582191;CREB1:0.325212787347;GFI1B:0.29854600587;HOX{A4,D4}:0.296191377074;TFCP2:0.286516448438;NFY{A,B,C}:0.279271378369;NKX3-1:0.276575710662;GCM1,2:0.256157294486;IRF1,2:0.217058667585;CDC5L:0.206926437157;HMX1:0.196338842965;TEF:0.191608072079;ESRRA:0.17342539056;CRX:0.164549862054;YY1:0.114652621232;NFATC1..3:0.102151106446;GZF1:0.101150971989;POU1F1:0.0981228676204;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0654976296068;HOXA9_MEIS1:0.0643161058587;NKX2-1,4:0.0443017235849;HAND1,2:0.0416379795464;TFDP1:0.0338778596889;EVI1:-0.0312060859588;FOXL1:-0.034686622407;ZNF238:-0.0569428730272;HMGA1,2:-0.0920766921408;PAX2:-0.100294688744;GFI1:-0.104483097525;NFIL3:-0.120247967432;HNF4A_NR2F1,2:-0.121751696768;ALX4:-0.155827282718;SPI1:-0.187894092122;ATF5_CREB3:-0.188287858187;VSX1,2:-0.194394786034;DMAP1_NCOR{1,2}_SMARC:-0.196071961855;RXR{A,B,G}:-0.222169105319;NR5A1,2:-0.224164160933;RORA:-0.245389717941;UFEwm:-0.247665867583;MEF2{A,B,C,D}:-0.253192300289;ETS1,2:-0.259164505615;TFAP4:-0.265973072494;HIF1A:-0.277966266255;SPIB:-0.279143161425;FOXN1:-0.332441719492;ELF1,2,4:-0.370526473009;NANOG{mouse}:-0.385895954174;XCPE1{core}:-0.396851247441;PBX1:-0.399100703423;AHR_ARNT_ARNT2:-0.417839128657;CEBPA,B_DDIT3:-0.417976243416;bHLH_family:-0.421041005946;NFE2L2:-0.43774257864;IKZF1:-0.461429646369;TP53:-0.473600879654;LHX3,4:-0.487518845126;ZEB1:-0.501220822292;GATA6:-0.536127539638;ATF6:-0.548015927352;NR6A1:-0.56659099454;NFE2L1:-0.596463241955;ATF4:-0.607428104506;MYOD1:-0.674867492033;NFE2:-0.676095193845;ELK1,4_GABP{A,B1}:-0.694249413844;HLF:-0.729733582088;TEAD1:-0.745723422309;TAL1_TCF{3,4,12}:-0.75371486531;NKX2-3_NKX2-5:-0.764649717003;TBP:-0.78291950726;NR1H4:-0.844416624045;HNF1A:-0.849791719591;SNAI1..3:-0.893344943865;ADNP_IRX_SIX_ZHX:-0.899238172319;TBX4,5:-0.916123236367;NFKB1_REL_RELA:-0.982473421663;FOSL2:-1.01780430671;E2F1..5:-1.02007202174;MYB:-1.03332543707;RUNX1..3:-1.03994272886;BACH2:-1.07259477106;SRF:-1.07337765897;FOS_FOS{B,L1}_JUN{B,D}:-1.09896313639;STAT5{A,B}:-1.3213587824;PAX1,9:-1.37313906692;ESR1:-1.37539714085;PAX8:-1.41716830294;POU2F1..3:-1.44349690846;RXRA_VDR{dimer}:-1.48908057489;HES1:-1.51626896398;PAX3,7:-1.58444353231;ZNF148:-1.61177514066;GLI1..3:-1.63986461519;EN1,2:-1.69881416792;PPARG:-2.39880001041;HOX{A5,B5}:-2.98038280024 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10158-103A5;search_select_hide=table117:FF:10158-103A5 | |||
}} | }} | ||
Latest revision as of 12:23, 3 June 2020
| Name: | substantia nigra, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12318 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12318
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12318
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.164 |
| 10 | 10 | 0.101 |
| 100 | 100 | 0.725 |
| 101 | 101 | 0.385 |
| 102 | 102 | 0.953 |
| 103 | 103 | 0.0171 |
| 104 | 104 | 0.0981 |
| 105 | 105 | 0.0978 |
| 106 | 106 | 0.0104 |
| 107 | 107 | 0.149 |
| 108 | 108 | 0.893 |
| 109 | 109 | 0.00121 |
| 11 | 11 | 0.0139 |
| 110 | 110 | 0.0653 |
| 111 | 111 | 0.5 |
| 112 | 112 | 0.257 |
| 113 | 113 | 0.0688 |
| 114 | 114 | 0.276 |
| 115 | 115 | 0.892 |
| 116 | 116 | 0.411 |
| 117 | 117 | 0.0324 |
| 118 | 118 | 0.413 |
| 119 | 119 | 0.644 |
| 12 | 12 | 0.211 |
| 120 | 120 | 0.166 |
| 121 | 121 | 0.467 |
| 122 | 122 | 0.737 |
| 123 | 123 | 0.0219 |
| 124 | 124 | 0.526 |
| 125 | 125 | 0.849 |
| 126 | 126 | 0.126 |
| 127 | 127 | 0.3 |
| 128 | 128 | 0.127 |
| 129 | 129 | 0.427 |
| 13 | 13 | 0.0091 |
| 130 | 130 | 0.112 |
| 131 | 131 | 0.021 |
| 132 | 132 | 0.261 |
| 133 | 133 | 0.192 |
| 134 | 134 | 0.383 |
| 135 | 135 | 0.265 |
| 136 | 136 | 0.00209 |
| 137 | 137 | 0.84 |
| 138 | 138 | 0.961 |
| 139 | 139 | 0.442 |
| 14 | 14 | 0.928 |
| 140 | 140 | 0.797 |
| 141 | 141 | 0.447 |
| 142 | 142 | 0.406 |
| 143 | 143 | 0.0238 |
| 144 | 144 | 0.53 |
| 145 | 145 | 0.596 |
| 146 | 146 | 0.567 |
| 147 | 147 | 0.773 |
| 148 | 148 | 0.859 |
| 149 | 149 | 0.125 |
| 15 | 15 | 0.0656 |
| 150 | 150 | 0.0729 |
| 151 | 151 | 0.933 |
| 152 | 152 | 0.0746 |
| 153 | 153 | 0.905 |
| 154 | 154 | 0.182 |
| 155 | 155 | 0.921 |
| 156 | 156 | 0.403 |
| 157 | 157 | 0.31 |
| 158 | 158 | 0.0858 |
| 159 | 159 | 0.00307 |
| 16 | 16 | 0.0297 |
| 160 | 160 | 0.224 |
| 161 | 161 | 0.301 |
| 162 | 162 | 0.703 |
| 163 | 163 | 0.578 |
| 164 | 164 | 0.0323 |
| 165 | 165 | 0.197 |
| 166 | 166 | 0.739 |
| 167 | 167 | 0.485 |
| 168 | 168 | 0.89 |
| 169 | 169 | 0.0579 |
| 17 | 17 | 0.0701 |
| 18 | 18 | 0.0376 |
| 19 | 19 | 0.479 |
| 2 | 2 | 0.781 |
| 20 | 20 | 0.321 |
| 21 | 21 | 0.058 |
| 22 | 22 | 0.276 |
| 23 | 23 | 0.324 |
| 24 | 24 | 0.0435 |
| 25 | 25 | 0.587 |
| 26 | 26 | 0.0635 |
| 27 | 27 | 0.336 |
| 28 | 28 | 0.921 |
| 29 | 29 | 0.00251 |
| 3 | 3 | 0.143 |
| 30 | 30 | 0.499 |
| 31 | 31 | 0.975 |
| 32 | 32 | 0.00856 |
| 33 | 33 | 0.0759 |
| 34 | 34 | 0.692 |
| 35 | 35 | 0.539 |
| 36 | 36 | 0.424 |
| 37 | 37 | 0.054 |
| 38 | 38 | 0.682 |
| 39 | 39 | 0.314 |
| 4 | 4 | 0.863 |
| 40 | 40 | 0.166 |
| 41 | 41 | 0.296 |
| 42 | 42 | 0.416 |
| 43 | 43 | 0.175 |
| 44 | 44 | 0.0848 |
| 45 | 45 | 0.59 |
| 46 | 46 | 0.0302 |
| 47 | 47 | 0.134 |
| 48 | 48 | 0.133 |
| 49 | 49 | 0.695 |
| 5 | 5 | 0.788 |
| 50 | 50 | 0.687 |
| 51 | 51 | 0.308 |
| 52 | 52 | 0.626 |
| 53 | 53 | 0.168 |
| 54 | 54 | 0.752 |
| 55 | 55 | 0.892 |
| 56 | 56 | 0.729 |
| 57 | 57 | 0.619 |
| 58 | 58 | 0.431 |
| 59 | 59 | 0.0481 |
| 6 | 6 | 0.494 |
| 60 | 60 | 0.115 |
| 61 | 61 | 0.237 |
| 62 | 62 | 0.191 |
| 63 | 63 | 0.666 |
| 64 | 64 | 0.132 |
| 65 | 65 | 0.355 |
| 66 | 66 | 0.0634 |
| 67 | 67 | 0.498 |
| 68 | 68 | 0.337 |
| 69 | 69 | 0.471 |
| 7 | 7 | 0.142 |
| 70 | 70 | 0.19 |
| 71 | 71 | 0.0122 |
| 72 | 72 | 0.159 |
| 73 | 73 | 0.0422 |
| 74 | 74 | 0.623 |
| 75 | 75 | 0.0218 |
| 76 | 76 | 0.342 |
| 77 | 77 | 0.123 |
| 78 | 78 | 0.00393 |
| 79 | 79 | 0.54 |
| 8 | 8 | 0.0669 |
| 80 | 80 | 0.325 |
| 81 | 81 | 0.632 |
| 82 | 82 | 0.789 |
| 83 | 83 | 0.0853 |
| 84 | 84 | 0.471 |
| 85 | 85 | 0.848 |
| 86 | 86 | 0.197 |
| 87 | 87 | 2.19812e-4 |
| 88 | 88 | 0.562 |
| 89 | 89 | 0.0771 |
| 9 | 9 | 0.265 |
| 90 | 90 | 0.366 |
| 91 | 91 | 0.677 |
| 92 | 92 | 0.573 |
| 93 | 93 | 0.884 |
| 94 | 94 | 0.273 |
| 95 | 95 | 0.02 |
| 96 | 96 | 0.547 |
| 97 | 97 | 0.771 |
| 98 | 98 | 0.237 |
| 99 | 99 | 0.566 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12318
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010158 human substantia nigra - adult donor sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002038 (substantia nigra)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0009661 (midbrain nucleus)
0000125 (neural nucleus)
0002950 (regional part of midbrain)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001893 (telencephalon)
0001890 (forebrain)
0001891 (midbrain)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010158 (human substantia nigra - adult donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
