FF:10175-103C4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005967 | ||
|accession_numbers=CAGE;DRX008658;DRR009530;DRZ000955;DRZ002340;DRZ012305;DRZ013690 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000479,UBERON:0001875,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0006514,UBERON:0010011,UBERON:0000454 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010161 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10175-103C4 | |id=FF:10175-103C4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010161 | ||
|is_obsolete= | |||
|library_id=CNhs13801 | |||
|library_id_phase_based=2:CNhs13801 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10175 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10175 | |||
|name=globus pallidus - adult, donor10196 | |name=globus pallidus - adult, donor10196 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 62: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.30114404637488,0.342588584645784,0,-0.160318030086386,0,0.254331471855709,0.642619655368588,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0509110379939077,0,0,0,0.223676777090322,0,0.433735707781165,0,0,0.630723095068315,0,0,0,0,0,0,0,0,0,0,0,0,-0.317954060866147,0.204234048342335,0,0,0,0,0,0,0,0.147079271210058,0.204234048342335,0.0208650817482413,0,0.204234048342335,0,0.115284229889338,0.204234048342335,0.566003486596732,0,0,0.245244957432687,0,0,0,0,0,0,0,0,0.204234048342335,0,0,0,0,0,0,0,0,0,0,0,0,0.0361856709223518,0,0.149279401819352,0.405797969523345,0.381839842423589,0,0.204234048342335,0.206869284266204,0.355793445703622,0.30114404637488,0,0.171294292322892,0,-0.0980353512377064,0.193020723118773,0,0,0,0,0,0,0.204234048342335,0,0,0,0,0,0,0,0,0,0,0.074920698400431,0,0,0,0,-0.212742786923589,0,0,0.0729699977961699,0.32579380126149,0,0 | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=75.8385 | |rna_weight_ug=75.8385 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.06026873943037e-270!GO:0005737;cytoplasm;3.78883276214652e-161!GO:0044444;cytoplasmic part;7.15231862013565e-112!GO:0043226;organelle;9.81332728431754e-105!GO:0043229;intracellular organelle;3.90399243521322e-104!GO:0043227;membrane-bound organelle;1.19982075324175e-98!GO:0043231;intracellular membrane-bound organelle;2.17398038437282e-98!GO:0044422;organelle part;5.78649492686883e-71!GO:0044446;intracellular organelle part;5.9405916458204e-70!GO:0032991;macromolecular complex;1.83461596581134e-60!GO:0005515;protein binding;2.97056517435198e-59!GO:0005739;mitochondrion;1.41634673580849e-52!GO:0030529;ribonucleoprotein complex;1.39580495770124e-48!GO:0016043;cellular component organization and biogenesis;1.45124608022832e-41!GO:0003723;RNA binding;9.46522499549404e-41!GO:0031090;organelle membrane;1.13404038217807e-40!GO:0044429;mitochondrial part;8.05521220159176e-38!GO:0033036;macromolecule localization;8.66353544080404e-35!GO:0015031;protein transport;1.59000723306701e-34!GO:0043233;organelle lumen;2.56139764904546e-33!GO:0031974;membrane-enclosed lumen;2.56139764904546e-33!GO:0044238;primary metabolic process;3.43014788739534e-32!GO:0044237;cellular metabolic process;4.27453135907939e-32!GO:0031975;envelope;6.76925025702395e-32!GO:0008104;protein localization;8.83077604140498e-32!GO:0031967;organelle envelope;1.00685721434653e-31!GO:0045184;establishment of protein localization;1.1141431143569e-31!GO:0043234;protein complex;1.70489750382729e-31!GO:0046907;intracellular transport;1.20379230130234e-30!GO:0044428;nuclear part;6.61945070116556e-30!GO:0005840;ribosome;2.4824219909509e-28!GO:0005829;cytosol;5.09130331883973e-28!GO:0019538;protein metabolic process;5.09130331883973e-28!GO:0043170;macromolecule metabolic process;4.26463323745813e-27!GO:0016071;mRNA metabolic process;3.13846098410748e-26!GO:0044260;cellular macromolecule metabolic process;1.75592324951747e-25!GO:0005740;mitochondrial envelope;2.75538586385362e-25!GO:0006396;RNA processing;5.99257757338004e-25!GO:0051649;establishment of cellular localization;1.02940778079279e-24!GO:0031966;mitochondrial membrane;1.30752589844326e-24!GO:0051641;cellular localization;1.65838366495492e-24!GO:0044267;cellular protein metabolic process;1.71647933648685e-24!GO:0008380;RNA splicing;2.02050996187469e-24!GO:0006412;translation;2.90642896699356e-24!GO:0003735;structural constituent of ribosome;4.592298975539e-24!GO:0009058;biosynthetic process;6.51869794442262e-23!GO:0019866;organelle inner membrane;9.6897114706658e-23!GO:0006886;intracellular protein transport;1.88982471550561e-22!GO:0006397;mRNA processing;5.28694903492291e-22!GO:0006119;oxidative phosphorylation;8.43927059696493e-22!GO:0005743;mitochondrial inner membrane;8.46170502053623e-22!GO:0005634;nucleus;1.56412569028254e-21!GO:0016192;vesicle-mediated transport;2.64616179167232e-21!GO:0033279;ribosomal subunit;5.39237230426954e-21!GO:0044249;cellular biosynthetic process;2.15430797655565e-19!GO:0009059;macromolecule biosynthetic process;5.81991013871365e-19!GO:0044455;mitochondrial membrane part;2.76175080092683e-18!GO:0065003;macromolecular complex assembly;2.68837993896158e-17!GO:0031981;nuclear lumen;1.06434971419642e-16!GO:0005794;Golgi apparatus;2.6274086810703e-16!GO:0005681;spliceosome;2.85030301405102e-16!GO:0005746;mitochondrial respiratory chain;3.04487283039435e-16!GO:0006996;organelle organization and biogenesis;6.4966807376906e-16!GO:0031980;mitochondrial lumen;8.07890632983348e-16!GO:0005759;mitochondrial matrix;8.07890632983348e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.26001875181817e-15!GO:0003954;NADH dehydrogenase activity;1.26001875181817e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.26001875181817e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.55956140570007e-15!GO:0012505;endomembrane system;1.55956140570007e-15!GO:0000166;nucleotide binding;1.55995679321334e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.76380024512023e-15!GO:0016462;pyrophosphatase activity;1.97726949422097e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;2.07785020789545e-15!GO:0022607;cellular component assembly;2.17922872400419e-15!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.57269265856261e-15!GO:0031982;vesicle;4.63272942095265e-15!GO:0017111;nucleoside-triphosphatase activity;2.17531623107512e-14!GO:0031410;cytoplasmic vesicle;2.7148590099127e-14!GO:0044445;cytosolic part;3.98516734405167e-14!GO:0030964;NADH dehydrogenase complex (quinone);8.86679823807618e-14!GO:0045271;respiratory chain complex I;8.86679823807618e-14!GO:0005747;mitochondrial respiratory chain complex I;8.86679823807618e-14!GO:0031988;membrane-bound vesicle;8.97034742653434e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.19020187337146e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.0057795660475e-13!GO:0016874;ligase activity;3.05191574409136e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.07691341303545e-13!GO:0042773;ATP synthesis coupled electron transport;3.07691341303545e-13!GO:0006457;protein folding;4.11136599218011e-13!GO:0006512;ubiquitin cycle;4.81463285614561e-13!GO:0016023;cytoplasmic membrane-bound vesicle;5.05944225739031e-13!GO:0043283;biopolymer metabolic process;6.4890913029512e-13!GO:0022618;protein-RNA complex assembly;1.00416908297375e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;2.89649874302297e-11!GO:0048770;pigment granule;3.21849370477573e-11!GO:0042470;melanosome;3.21849370477573e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.79379026840289e-11!GO:0044257;cellular protein catabolic process;4.40350765162865e-11!GO:0019941;modification-dependent protein catabolic process;4.94296182416151e-11!GO:0043632;modification-dependent macromolecule catabolic process;4.94296182416151e-11!GO:0006511;ubiquitin-dependent protein catabolic process;5.2589427717266e-11!GO:0015935;small ribosomal subunit;5.45808275684255e-11!GO:0006605;protein targeting;7.40575426925235e-11!GO:0005783;endoplasmic reticulum;7.78370350107111e-11!GO:0015934;large ribosomal subunit;7.97760685979867e-11!GO:0010467;gene expression;8.19872198758595e-11!GO:0043412;biopolymer modification;8.44608980748971e-11!GO:0032553;ribonucleotide binding;9.4874503079558e-11!GO:0032555;purine ribonucleotide binding;9.4874503079558e-11!GO:0044265;cellular macromolecule catabolic process;1.61686429921737e-10!GO:0048193;Golgi vesicle transport;1.63478141672457e-10!GO:0003924;GTPase activity;1.64875731830356e-10!GO:0051082;unfolded protein binding;1.77743260328446e-10!GO:0044248;cellular catabolic process;1.92317569231568e-10!GO:0043228;non-membrane-bound organelle;2.97903762338629e-10!GO:0043232;intracellular non-membrane-bound organelle;2.97903762338629e-10!GO:0006464;protein modification process;3.0891071965439e-10!GO:0005654;nucleoplasm;3.14440384675057e-10!GO:0017076;purine nucleotide binding;3.14440384675057e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.66318470714071e-10!GO:0008135;translation factor activity, nucleic acid binding;6.72189589431111e-10!GO:0043687;post-translational protein modification;7.16671764480938e-10!GO:0043285;biopolymer catabolic process;9.72417953665046e-10!GO:0019829;cation-transporting ATPase activity;2.29623140068131e-09!GO:0030163;protein catabolic process;2.51443166102641e-09!GO:0016044;membrane organization and biogenesis;2.57070257953629e-09!GO:0008565;protein transporter activity;2.83248719636792e-09!GO:0005761;mitochondrial ribosome;3.56782801039932e-09!GO:0000313;organellar ribosome;3.56782801039932e-09!GO:0000502;proteasome complex (sensu Eukaryota);4.03178441602817e-09!GO:0044451;nucleoplasm part;4.47459156280803e-09!GO:0051186;cofactor metabolic process;4.99487722769096e-09!GO:0006446;regulation of translational initiation;1.35496978112386e-08!GO:0005525;GTP binding;1.41767023867489e-08!GO:0005768;endosome;1.76812669568105e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.79509875278053e-08!GO:0009057;macromolecule catabolic process;1.9499741291245e-08!GO:0007264;small GTPase mediated signal transduction;2.34941873862023e-08!GO:0008092;cytoskeletal protein binding;2.72739339027604e-08!GO:0008639;small protein conjugating enzyme activity;3.42870531248808e-08!GO:0006793;phosphorus metabolic process;3.70229733279846e-08!GO:0006796;phosphate metabolic process;3.70229733279846e-08!GO:0006413;translational initiation;4.06351265352507e-08!GO:0008134;transcription factor binding;4.2338793530902e-08!GO:0004842;ubiquitin-protein ligase activity;5.66394504337094e-08!GO:0030695;GTPase regulator activity;5.96969887970868e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.3039816002323e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;7.54641885928176e-08!GO:0000375;RNA splicing, via transesterification reactions;7.54641885928176e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.54641885928176e-08!GO:0045045;secretory pathway;7.88055290254863e-08!GO:0015986;ATP synthesis coupled proton transport;8.12150691145101e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.12150691145101e-08!GO:0003743;translation initiation factor activity;1.20726080053513e-07!GO:0019787;small conjugating protein ligase activity;1.21566015246241e-07!GO:0005635;nuclear envelope;1.3943582310207e-07!GO:0006913;nucleocytoplasmic transport;1.53384637645481e-07!GO:0031965;nuclear membrane;1.74863986304444e-07!GO:0051169;nuclear transport;2.32071808163814e-07!GO:0032561;guanyl ribonucleotide binding;2.50579759206343e-07!GO:0019001;guanyl nucleotide binding;2.50579759206343e-07!GO:0044432;endoplasmic reticulum part;2.56920574180305e-07!GO:0009060;aerobic respiration;2.59283100758697e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.74780824629285e-07!GO:0044431;Golgi apparatus part;3.17300945983456e-07!GO:0005730;nucleolus;3.44514611317727e-07!GO:0015631;tubulin binding;3.94941833428705e-07!GO:0016604;nuclear body;5.01704448324398e-07!GO:0006461;protein complex assembly;5.17588353050316e-07!GO:0045333;cellular respiration;6.00948400202878e-07!GO:0030135;coated vesicle;6.36957602394883e-07!GO:0009055;electron carrier activity;6.86357309748383e-07!GO:0006810;transport;1.02747475417608e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.14551744481396e-06!GO:0006732;coenzyme metabolic process;1.24208710433285e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.59262678661249e-06!GO:0016607;nuclear speck;1.66547377321372e-06!GO:0009056;catabolic process;1.69545196785121e-06!GO:0016881;acid-amino acid ligase activity;1.81762470396286e-06!GO:0005083;small GTPase regulator activity;1.81880392201057e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.97691221725939e-06!GO:0006164;purine nucleotide biosynthetic process;2.09714866623943e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.17766491402226e-06!GO:0006163;purine nucleotide metabolic process;2.42360493202161e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.47297520986858e-06!GO:0006754;ATP biosynthetic process;2.57872037922775e-06!GO:0006753;nucleoside phosphate metabolic process;2.57872037922775e-06!GO:0046034;ATP metabolic process;2.97555777531794e-06!GO:0005789;endoplasmic reticulum membrane;3.08119188640359e-06!GO:0048471;perinuclear region of cytoplasm;3.25880643160622e-06!GO:0048523;negative regulation of cellular process;3.28318506290524e-06!GO:0009152;purine ribonucleotide biosynthetic process;3.71206577626242e-06!GO:0009141;nucleoside triphosphate metabolic process;4.26287730606902e-06!GO:0007010;cytoskeleton organization and biogenesis;4.33456111427256e-06!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.40260669159519e-06!GO:0009150;purine ribonucleotide metabolic process;4.50455613672177e-06!GO:0051246;regulation of protein metabolic process;5.84728647034152e-06!GO:0006897;endocytosis;6.53468506100734e-06!GO:0010324;membrane invagination;6.53468506100734e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.79728944680395e-06!GO:0006099;tricarboxylic acid cycle;6.92717653711651e-06!GO:0046356;acetyl-CoA catabolic process;6.92717653711651e-06!GO:0008287;protein serine/threonine phosphatase complex;8.863898783382e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.68133426657126e-06!GO:0009144;purine nucleoside triphosphate metabolic process;9.68133426657126e-06!GO:0009259;ribonucleotide metabolic process;9.68133426657126e-06!GO:0009199;ribonucleoside triphosphate metabolic process;9.76008796752582e-06!GO:0045259;proton-transporting ATP synthase complex;1.00790074060062e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.15440466689489e-05!GO:0009109;coenzyme catabolic process;1.17644043980127e-05!GO:0005905;coated pit;1.27150981894679e-05!GO:0017038;protein import;1.30123612995387e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.33137101763568e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.33137101763568e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.37718981588617e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.37718981588617e-05!GO:0016310;phosphorylation;1.42441479568554e-05!GO:0009260;ribonucleotide biosynthetic process;1.59657106137664e-05!GO:0032559;adenyl ribonucleotide binding;1.67985608809087e-05!GO:0051179;localization;1.68575899153015e-05!GO:0051187;cofactor catabolic process;1.78841298195799e-05!GO:0048475;coated membrane;1.85007662157228e-05!GO:0030117;membrane coat;1.85007662157228e-05!GO:0008017;microtubule binding;1.92621759856198e-05!GO:0044453;nuclear membrane part;2.33315576985275e-05!GO:0000139;Golgi membrane;2.41758134227816e-05!GO:0031252;leading edge;2.43467101235292e-05!GO:0032940;secretion by cell;2.54290343547822e-05!GO:0042623;ATPase activity, coupled;2.70911034847914e-05!GO:0015630;microtubule cytoskeleton;3.01561537809387e-05!GO:0006084;acetyl-CoA metabolic process;3.05386357199994e-05!GO:0044440;endosomal part;3.06770706280632e-05!GO:0010008;endosome membrane;3.06770706280632e-05!GO:0016887;ATPase activity;3.24907273842612e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.39590366129175e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.71395600667592e-05!GO:0015399;primary active transmembrane transporter activity;3.71395600667592e-05!GO:0019899;enzyme binding;3.73108310730195e-05!GO:0005770;late endosome;4.00368205904102e-05!GO:0048519;negative regulation of biological process;4.00368205904102e-05!GO:0005643;nuclear pore;4.06962140658145e-05!GO:0005524;ATP binding;4.24815661526877e-05!GO:0030554;adenyl nucleotide binding;4.41889668748522e-05!GO:0012501;programmed cell death;4.51154745372453e-05!GO:0005769;early endosome;4.6523187041064e-05!GO:0051234;establishment of localization;4.65268563596704e-05!GO:0006915;apoptosis;5.05438372615332e-05!GO:0008219;cell death;5.26268129773775e-05!GO:0016265;death;5.26268129773775e-05!GO:0051188;cofactor biosynthetic process;6.32678639392122e-05!GO:0019717;synaptosome;6.75395379797958e-05!GO:0030029;actin filament-based process;6.82098971921171e-05!GO:0045786;negative regulation of progression through cell cycle;7.29006576834127e-05!GO:0050657;nucleic acid transport;7.58947581094646e-05!GO:0051236;establishment of RNA localization;7.58947581094646e-05!GO:0050658;RNA transport;7.58947581094646e-05!GO:0032446;protein modification by small protein conjugation;7.77837367354207e-05!GO:0006403;RNA localization;8.09086975257485e-05!GO:0051128;regulation of cellular component organization and biogenesis;8.59003377327416e-05!GO:0016567;protein ubiquitination;9.57614856002617e-05!GO:0008654;phospholipid biosynthetic process;0.000107637071454586!GO:0030120;vesicle coat;0.000109010191573079!GO:0030662;coated vesicle membrane;0.000109010191573079!GO:0007242;intracellular signaling cascade;0.000129149181656248!GO:0000245;spliceosome assembly;0.000143137808558071!GO:0022890;inorganic cation transmembrane transporter activity;0.000162841514500762!GO:0005773;vacuole;0.000173163832286514!GO:0006888;ER to Golgi vesicle-mediated transport;0.000230678245242942!GO:0003712;transcription cofactor activity;0.000233188516919888!GO:0043492;ATPase activity, coupled to movement of substances;0.000240765025619471!GO:0043005;neuron projection;0.0002475680896073!GO:0006613;cotranslational protein targeting to membrane;0.000252971615610175!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000263485780912338!GO:0000159;protein phosphatase type 2A complex;0.000279134822956809!GO:0008047;enzyme activator activity;0.000295057292598249!GO:0030136;clathrin-coated vesicle;0.000301302523315831!GO:0005874;microtubule;0.000306064880978997!GO:0005096;GTPase activator activity;0.000317895207145408!GO:0003779;actin binding;0.000355296692740156!GO:0009117;nucleotide metabolic process;0.000357905724463944!GO:0007399;nervous system development;0.000360100428064411!GO:0016791;phosphoric monoester hydrolase activity;0.000368080600122666!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00038431325991787!GO:0051170;nuclear import;0.000405806722210277!GO:0006259;DNA metabolic process;0.000415705105098188!GO:0030532;small nuclear ribonucleoprotein complex;0.00041790843947005!GO:0046467;membrane lipid biosynthetic process;0.000442854753379911!GO:0005741;mitochondrial outer membrane;0.000453511001754292!GO:0006752;group transfer coenzyme metabolic process;0.00049314226703505!GO:0004721;phosphoprotein phosphatase activity;0.000524642621151955!GO:0006606;protein import into nucleus;0.000529246228595728!GO:0005798;Golgi-associated vesicle;0.000537560412467947!GO:0015980;energy derivation by oxidation of organic compounds;0.000605421528880682!GO:0008601;protein phosphatase type 2A regulator activity;0.000627545500043653!GO:0043566;structure-specific DNA binding;0.000726486885019693!GO:0016564;transcription repressor activity;0.000731231944491565!GO:0043069;negative regulation of programmed cell death;0.000731231944491565!GO:0000902;cell morphogenesis;0.000736086265132478!GO:0032989;cellular structure morphogenesis;0.000736086265132478!GO:0006650;glycerophospholipid metabolic process;0.000794285294169167!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000802235007982261!GO:0030133;transport vesicle;0.000808067863857316!GO:0043066;negative regulation of apoptosis;0.000828727768373753!GO:0051028;mRNA transport;0.000863037114805717!GO:0019208;phosphatase regulator activity;0.000867649814904848!GO:0031072;heat shock protein binding;0.000871955596459397!GO:0009108;coenzyme biosynthetic process;0.000913492402614877!GO:0000151;ubiquitin ligase complex;0.000942701762618509!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000943383230915508!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000979430357684239!GO:0004812;aminoacyl-tRNA ligase activity;0.000979430357684239!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000979430357684239!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00105313914413545!GO:0016311;dephosphorylation;0.00106374449901717!GO:0000323;lytic vacuole;0.00106811279820965!GO:0005764;lysosome;0.00106811279820965!GO:0030867;rough endoplasmic reticulum membrane;0.00107049774247725!GO:0031968;organelle outer membrane;0.00107273409738849!GO:0043623;cellular protein complex assembly;0.00113556410968681!GO:0019867;outer membrane;0.00124788218057958!GO:0043038;amino acid activation;0.0012823353839298!GO:0006418;tRNA aminoacylation for protein translation;0.0012823353839298!GO:0043039;tRNA aminoacylation;0.0012823353839298!GO:0003724;RNA helicase activity;0.00131099326784179!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00135706608488576!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00143236560294857!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00143236560294857!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00143236560294857!GO:0006916;anti-apoptosis;0.00144849328907453!GO:0016050;vesicle organization and biogenesis;0.00146717271303435!GO:0030425;dendrite;0.00146717271303435!GO:0065002;intracellular protein transport across a membrane;0.00149165294579823!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00153822419959357!GO:0046870;cadmium ion binding;0.00161852736243951!GO:0005762;mitochondrial large ribosomal subunit;0.00161852736243951!GO:0000315;organellar large ribosomal subunit;0.00161852736243951!GO:0005839;proteasome core complex (sensu Eukaryota);0.00165382034524952!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00168186831522375!GO:0003697;single-stranded DNA binding;0.00168292606028!GO:0005793;ER-Golgi intermediate compartment;0.00172170630723841!GO:0005048;signal sequence binding;0.00188394065866936!GO:0031901;early endosome membrane;0.0019653433895571!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00225584103987144!GO:0004667;prostaglandin-D synthase activity;0.00225584103987144!GO:0050802;circadian sleep/wake cycle, sleep;0.00225584103987144!GO:0022410;circadian sleep/wake cycle process;0.00225584103987144!GO:0042749;regulation of circadian sleep/wake cycle;0.00225584103987144!GO:0006470;protein amino acid dephosphorylation;0.00234741656107387!GO:0006091;generation of precursor metabolites and energy;0.00238067984651384!GO:0046930;pore complex;0.002414498811966!GO:0019888;protein phosphatase regulator activity;0.002414498811966!GO:0048468;cell development;0.00248310945402924!GO:0007019;microtubule depolymerization;0.00254833200548462!GO:0007265;Ras protein signal transduction;0.00265349437200582!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00268380866856535!GO:0030027;lamellipodium;0.0027004735501956!GO:0005791;rough endoplasmic reticulum;0.0027004735501956!GO:0006607;NLS-bearing substrate import into nucleus;0.00271213547097492!GO:0009966;regulation of signal transduction;0.00273445975525985!GO:0008361;regulation of cell size;0.00289597855044926!GO:0048487;beta-tubulin binding;0.00294363180875869!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00294363180875869!GO:0005516;calmodulin binding;0.00319240187637445!GO:0051087;chaperone binding;0.0032018709487197!GO:0051056;regulation of small GTPase mediated signal transduction;0.00321192613338766!GO:0042578;phosphoric ester hydrolase activity;0.00325493517195631!GO:0016070;RNA metabolic process;0.00327151656177797!GO:0008026;ATP-dependent helicase activity;0.00328557000821834!GO:0051726;regulation of cell cycle;0.00330276344936881!GO:0005085;guanyl-nucleotide exchange factor activity;0.00331616326448775!GO:0022406;membrane docking;0.00336942229892628!GO:0048278;vesicle docking;0.00336942229892628!GO:0046474;glycerophospholipid biosynthetic process;0.00339744142780345!GO:0004722;protein serine/threonine phosphatase activity;0.00350433086831493!GO:0003729;mRNA binding;0.00350433086831493!GO:0006612;protein targeting to membrane;0.00350433086831493!GO:0000314;organellar small ribosomal subunit;0.0035274871396243!GO:0005763;mitochondrial small ribosomal subunit;0.0035274871396243!GO:0005938;cell cortex;0.00361680022002026!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00376489194653798!GO:0003714;transcription corepressor activity;0.00395644045269776!GO:0016197;endosome transport;0.00395644045269776!GO:0043209;myelin sheath;0.00406950725797406!GO:0004386;helicase activity;0.00420433579274025!GO:0006414;translational elongation;0.00423416386179406!GO:0004298;threonine endopeptidase activity;0.00435714317552465!GO:0030118;clathrin coat;0.00444869070904527!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00459963214996838!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00462592601334085!GO:0001726;ruffle;0.00468010719739079!GO:0008610;lipid biosynthetic process;0.00474103767354505!GO:0000074;regulation of progression through cell cycle;0.00479067900919733!GO:0016049;cell growth;0.00487329105354968!GO:0051920;peroxiredoxin activity;0.00492156809043101!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00506636862347665!GO:0007005;mitochondrion organization and biogenesis;0.00518873853579249!GO:0042254;ribosome biogenesis and assembly;0.0054231566183352!GO:0006643;membrane lipid metabolic process;0.00589889094463633!GO:0006323;DNA packaging;0.00595976998519344!GO:0009165;nucleotide biosynthetic process;0.00604836029998366!GO:0006904;vesicle docking during exocytosis;0.00612717700794204!GO:0006974;response to DNA damage stimulus;0.00639368290104945!GO:0008139;nuclear localization sequence binding;0.00642018945398559!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00652550663400886!GO:0006366;transcription from RNA polymerase II promoter;0.00663403905540811!GO:0019902;phosphatase binding;0.00666313612289876!GO:0051168;nuclear export;0.00669280822560021!GO:0005875;microtubule associated complex;0.00737956190093306!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00767462857197454!GO:0031114;regulation of microtubule depolymerization;0.00770898915745149!GO:0007026;negative regulation of microtubule depolymerization;0.00770898915745149!GO:0006402;mRNA catabolic process;0.00788108722885647!GO:0003676;nucleic acid binding;0.00812497680167338!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00820802628573981!GO:0005813;centrosome;0.00831093889029804!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00841916208437116!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00841916208437116!GO:0030426;growth cone;0.00853633165632837!GO:0050811;GABA receptor binding;0.00867808082469829!GO:0006892;post-Golgi vesicle-mediated transport;0.00903809895330222!GO:0005100;Rho GTPase activator activity;0.00923753369695835!GO:0043021;ribonucleoprotein binding;0.00930404251802661!GO:0016859;cis-trans isomerase activity;0.00953372056135214!GO:0007272;ensheathment of neurons;0.00959105772276494!GO:0008366;axon ensheathment;0.00959105772276494!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00991315853786923!GO:0048500;signal recognition particle;0.0100474334862204!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0101174845754652!GO:0051427;hormone receptor binding;0.0101785706814754!GO:0030384;phosphoinositide metabolic process;0.0102711379461499!GO:0051540;metal cluster binding;0.0103669950061744!GO:0051536;iron-sulfur cluster binding;0.0103669950061744!GO:0044448;cell cortex part;0.0104608227731657!GO:0008154;actin polymerization and/or depolymerization;0.0105849683900518!GO:0012506;vesicle membrane;0.0106199559633477!GO:0008250;oligosaccharyl transferase complex;0.0106600846848907!GO:0008186;RNA-dependent ATPase activity;0.0106610073928669!GO:0030427;site of polarized growth;0.0107857822532524!GO:0051287;NAD binding;0.0109478661963735!GO:0030041;actin filament polymerization;0.0110303407338472!GO:0033673;negative regulation of kinase activity;0.0114048218474771!GO:0006469;negative regulation of protein kinase activity;0.0114048218474771!GO:0007049;cell cycle;0.0116613689547947!GO:0031902;late endosome membrane;0.0117735932931767!GO:0007243;protein kinase cascade;0.011942515363024!GO:0001578;microtubule bundle formation;0.0121901303778632!GO:0050767;regulation of neurogenesis;0.0128287619786138!GO:0030132;clathrin coat of coated pit;0.0133431081206817!GO:0051348;negative regulation of transferase activity;0.0142121710143847!GO:0046489;phosphoinositide biosynthetic process;0.0145233369895292!GO:0016491;oxidoreductase activity;0.0145233369895292!GO:0006672;ceramide metabolic process;0.0145410636990455!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0146501189327603!GO:0055083;monovalent inorganic anion homeostasis;0.0146501189327603!GO:0055064;chloride ion homeostasis;0.0146501189327603!GO:0030644;cellular chloride ion homeostasis;0.0146501189327603!GO:0042802;identical protein binding;0.0149767874481825!GO:0050839;cell adhesion molecule binding;0.0153599435980348!GO:0008286;insulin receptor signaling pathway;0.0154104152667807!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0157127320591971!GO:0035257;nuclear hormone receptor binding;0.0164096895965003!GO:0005868;cytoplasmic dynein complex;0.017093465151147!GO:0030742;GTP-dependent protein binding;0.017093465151147!GO:0006399;tRNA metabolic process;0.0177597940003525!GO:0016126;sterol biosynthetic process;0.0178257630660008!GO:0051539;4 iron, 4 sulfur cluster binding;0.0180128085606965!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0180653647474548!GO:0045047;protein targeting to ER;0.0180653647474548!GO:0007017;microtubule-based process;0.0183615766150463!GO:0005885;Arp2/3 protein complex;0.0183615766150463!GO:0000059;protein import into nucleus, docking;0.0187994680398641!GO:0004576;oligosaccharyl transferase activity;0.0189634877302201!GO:0043284;biopolymer biosynthetic process;0.0190675393344097!GO:0050789;regulation of biological process;0.0192112801394362!GO:0031124;mRNA 3'-end processing;0.0192187572208674!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0194983349436644!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0194983349436644!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0195339051383424!GO:0031109;microtubule polymerization or depolymerization;0.0195938078834524!GO:0035035;histone acetyltransferase binding;0.0196658791046156!GO:0016787;hydrolase activity;0.0196844581806609!GO:0048489;synaptic vesicle transport;0.0197382048725645!GO:0005815;microtubule organizing center;0.0198421242703137!GO:0009066;aspartate family amino acid metabolic process;0.019876032673809!GO:0009081;branched chain family amino acid metabolic process;0.019957901790902!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0201054842517183!GO:0043681;protein import into mitochondrion;0.0201090909014147!GO:0007006;mitochondrial membrane organization and biogenesis;0.0208589557474307!GO:0001558;regulation of cell growth;0.0211593018178919!GO:0003690;double-stranded DNA binding;0.0217940717705812!GO:0030658;transport vesicle membrane;0.0218379305934772!GO:0042176;regulation of protein catabolic process;0.0225178234218414!GO:0003746;translation elongation factor activity;0.0227488144305487!GO:0016301;kinase activity;0.0237614897368859!GO:0005869;dynactin complex;0.0239535879291701!GO:0016568;chromatin modification;0.0242572783333506!GO:0019783;small conjugating protein-specific protease activity;0.0250984516789619!GO:0001508;regulation of action potential;0.0251338184841706!GO:0004004;ATP-dependent RNA helicase activity;0.0252260001971935!GO:0006665;sphingolipid metabolic process;0.0255799079134369!GO:0030258;lipid modification;0.0261251554859535!GO:0044433;cytoplasmic vesicle part;0.0262546881476914!GO:0009892;negative regulation of metabolic process;0.0264531128712014!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0264763572931953!GO:0004860;protein kinase inhibitor activity;0.0266671605793381!GO:0004674;protein serine/threonine kinase activity;0.0270144555499024!GO:0006891;intra-Golgi vesicle-mediated transport;0.0271757487817601!GO:0006644;phospholipid metabolic process;0.0274327244628194!GO:0016272;prefoldin complex;0.0275019971503961!GO:0004221;ubiquitin thiolesterase activity;0.0277187736284776!GO:0005099;Ras GTPase activator activity;0.0279140845697754!GO:0050794;regulation of cellular process;0.0279404776880925!GO:0006333;chromatin assembly or disassembly;0.0280344715056367!GO:0008312;7S RNA binding;0.0284738320895818!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0284738320895818!GO:0015002;heme-copper terminal oxidase activity;0.0284738320895818!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0284738320895818!GO:0004129;cytochrome-c oxidase activity;0.0284738320895818!GO:0019752;carboxylic acid metabolic process;0.0286896945106228!GO:0019911;structural constituent of myelin sheath;0.0304842139936053!GO:0019904;protein domain specific binding;0.0307336869048012!GO:0019887;protein kinase regulator activity;0.0308612621981659!GO:0003713;transcription coactivator activity;0.030909217347775!GO:0046519;sphingoid metabolic process;0.0310014430661245!GO:0006383;transcription from RNA polymerase III promoter;0.0323315256749816!GO:0030660;Golgi-associated vesicle membrane;0.0323315256749816!GO:0003711;transcription elongation regulator activity;0.0325351233395327!GO:0007266;Rho protein signal transduction;0.0329332782684099!GO:0004843;ubiquitin-specific protease activity;0.0329454682152183!GO:0006082;organic acid metabolic process;0.0331366999007633!GO:0017091;AU-rich element binding;0.0332557923434441!GO:0050779;RNA destabilization;0.0332557923434441!GO:0000289;poly(A) tail shortening;0.0332557923434441!GO:0051789;response to protein stimulus;0.0333805921276632!GO:0006986;response to unfolded protein;0.0333805921276632!GO:0006364;rRNA processing;0.0337247219716793!GO:0030137;COPI-coated vesicle;0.0337522267183408!GO:0051261;protein depolymerization;0.0337522267183408!GO:0006818;hydrogen transport;0.033832157415282!GO:0004113;2',3'-cyclic-nucleotide 3'-phosphodiesterase activity;0.0341394003525694!GO:0009214;cyclic nucleotide catabolic process;0.0341394003525694!GO:0050749;apolipoprotein E receptor binding;0.03538662644545!GO:0050435;beta-amyloid metabolic process;0.0358583790148615!GO:0007034;vacuolar transport;0.0358596912217303!GO:0001666;response to hypoxia;0.0364778368538246!GO:0045296;cadherin binding;0.0372822536222699!GO:0000209;protein polyubiquitination;0.037320791262465!GO:0032287;myelin maintenance in the peripheral nervous system;0.037320791262465!GO:0032838;cell projection cytoplasm;0.037320791262465!GO:0033081;regulation of T cell differentiation in the thymus;0.037320791262465!GO:0043217;myelin maintenance;0.037320791262465!GO:0060087;relaxation of vascular smooth muscle;0.037320791262465!GO:0032839;dendrite cytoplasm;0.037320791262465!GO:0016740;transferase activity;0.0382108158272894!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0382626446055072!GO:0000062;acyl-CoA binding;0.0384747179196576!GO:0044255;cellular lipid metabolic process;0.0389800193046695!GO:0001505;regulation of neurotransmitter levels;0.0391581859207599!GO:0031371;ubiquitin conjugating enzyme complex;0.0396415442394692!GO:0042158;lipoprotein biosynthetic process;0.0403667190185065!GO:0030911;TPR domain binding;0.0407506530510001!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.041539407835888!GO:0019198;transmembrane receptor protein phosphatase activity;0.041539407835888!GO:0043488;regulation of mRNA stability;0.041539407835888!GO:0043487;regulation of RNA stability;0.041539407835888!GO:0048154;S100 beta binding;0.0417009359859967!GO:0006611;protein export from nucleus;0.0420996867095625!GO:0006281;DNA repair;0.0428860941826765!GO:0005774;vacuolar membrane;0.0430503367983324!GO:0006661;phosphatidylinositol biosynthetic process;0.0433676137989446!GO:0016408;C-acyltransferase activity;0.044354480264545!GO:0015682;ferric iron transport;0.0447051709726347!GO:0015091;ferric iron transmembrane transporter activity;0.0447051709726347!GO:0031643;positive regulation of myelination;0.0447051709726347!GO:0015992;proton transport;0.0447294302338418!GO:0019903;protein phosphatase binding;0.0447739852955957!GO:0035258;steroid hormone receptor binding;0.0453771219126842!GO:0031123;RNA 3'-end processing;0.0453771219126842!GO:0015248;sterol transporter activity;0.0453771219126842!GO:0007050;cell cycle arrest;0.0463469233045534!GO:0051252;regulation of RNA metabolic process;0.0466345038105367!GO:0016363;nuclear matrix;0.0468757309923794!GO:0017166;vinculin binding;0.0484003963071664!GO:0043086;negative regulation of catalytic activity;0.0488971227065832!GO:0008180;signalosome;0.0493712966725989!GO:0046839;phospholipid dephosphorylation;0.0496741617500958!GO:0000287;magnesium ion binding;0.0497440304458969!GO:0043067;regulation of programmed cell death;0.0499395665833435 | |||
|sample_id=10175 | |sample_id=10175 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=globus pallidus | |sample_tissue=globus pallidus | ||
|top_motifs=SOX5:3.80687030592;SOX2:3.13817007678;DBP:3.02783386802;MTF1:2.98002642157;NFIX:2.90636218021;NHLH1,2:2.82641536774;ATF2:2.82399005716;OCT4_SOX2{dimer}:2.76678040554;MYFfamily:2.66266272077;MED-1{core}:2.65451961185;REST:2.63590208942;ZFP161:2.54322671622;SOX{8,9,10}:2.50037740424;NKX3-2:2.49538535615;SOX17:2.29107135559;XBP1:2.27686750756;CUX2:2.17919660119;ZBTB6:2.15676255223;EGR1..3:2.15068771226;PRRX1,2:2.08085540914;HOXA9_MEIS1:2.06163155268;MTE{core}:2.03224735918;HIC1:2.02508647331;FOXP3:1.93291512844;AHR_ARNT_ARNT2:1.91512161847;RREB1:1.8440868518;NKX6-1,2:1.79783518821;TGIF1:1.77583832472;SMAD1..7,9:1.76456290287;RBPJ:1.72878689781;RFX2..5_RFXANK_RFXAP:1.72804660146;JUN:1.72479265658;TFAP2B:1.72258691867;AR:1.71190881651;PRDM1:1.70933103892;GTF2I:1.69690678747;ONECUT1,2:1.6952106945;RFX1:1.68426902589;ADNP_IRX_SIX_ZHX:1.65666282911;LMO2:1.64300308231;FOXM1:1.63136827608;NANOG:1.60467210516;STAT2,4,6:1.52651616665;MAFB:1.4997635001;GATA4:1.43782668074;MZF1:1.43329045789;ALX1:1.41786759112;PAX5:1.41055167147;PAX6:1.38973945055;FOX{F1,F2,J1}:1.32830478501;BREu{core}:1.27762737355;HOX{A6,A7,B6,B7}:1.27289153171;PATZ1:1.26865316471;POU6F1:1.25861120544;ARID5B:1.22600635927;LEF1_TCF7_TCF7L1,2:1.20735446746;VSX1,2:1.18115896105;STAT1,3:1.17996032227;FOXD3:1.13496133686;CDC5L:1.12271897031;MAZ:1.10098614832;MYBL2:1.09391495619;POU5F1:1.08784000189;NRF1:1.08783013264;NKX2-3_NKX2-5:1.08225094877;SP1:1.02722482153;HOX{A4,D4}:1.00437195496;KLF4:0.99870101757;TFAP2{A,C}:0.989219903196;GFI1B:0.970221118383;ZNF423:0.969465313964;HBP1_HMGB_SSRP1_UBTF:0.935107595574;HMGA1,2:0.911043480133;SREBF1,2:0.890617014378;LHX3,4:0.870844245034;ESRRA:0.854394007098;TLX2:0.851828984186;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.81588506315;NR3C1:0.812946297136;ZBTB16:0.812506144162;EP300:0.765674255562;TFDP1:0.755565561065;ZNF384:0.755362896917;FOXP1:0.711734900415;SPZ1:0.699629227083;POU3F1..4:0.678925524523;HMX1:0.662640734587;RORA:0.647469361701;FOX{D1,D2}:0.629986060656;GZF1:0.562156005641;TLX1..3_NFIC{dimer}:0.548908905236;EBF1:0.547703071776;CRX:0.533576912982;IRF7:0.521634441981;CDX1,2,4:0.513275657093;CREB1:0.503954912209;PBX1:0.502477296595;ZNF143:0.475195913193;BPTF:0.433710354444;NFIL3:0.403868622004;IKZF2:0.398947083907;GTF2A1,2:0.378682896602;HAND1,2:0.37377900843;FOXN1:0.347572676392;MEF2{A,B,C,D}:0.323291892259;GFI1:0.315119536218;FOX{I1,J2}:0.281953541259;ATF5_CREB3:0.274172879165;ZEB1:0.27323904981;PAX2:0.224190143526;PDX1:0.201050530109;FOXQ1:0.195356174299;T:0.190905623229;PAX1,9:0.1691065042;ZNF238:0.052609567513;MYOD1:0.0503710938191;NFE2L1:0.0455884124814;PAX4:-0.0389515973306;ATF4:-0.0519871205337;CEBPA,B_DDIT3:-0.0520333114621;GCM1,2:-0.0606957082768;IRF1,2:-0.0729283552109;NR5A1,2:-0.0733236477256;ZIC1..3:-0.0817767985369;NFY{A,B,C}:-0.0857911868606;YY1:-0.15262764387;TFAP4:-0.245464790813;FOXL1:-0.283026089173;bHLH_family:-0.289081090244;DMAP1_NCOR{1,2}_SMARC:-0.297947185985;NANOG{mouse}:-0.380325025819;FOXO1,3,4:-0.385333107504;TEF:-0.445053831301;TOPORS:-0.45379964062;NFE2:-0.453832119711;TBP:-0.459691486038;ATF6:-0.498497965042;GATA6:-0.5082762035;TFCP2:-0.511140355298;NKX2-1,4:-0.519289594837;NFE2L2:-0.527031554205;ETS1,2:-0.52982005059;HNF4A_NR2F1,2:-0.531552411146;EVI1:-0.533200657872;PITX1..3:-0.536173317897;NKX3-1:-0.541327262789;FOXA2:-0.551263490709;POU1F1:-0.572615105404;HSF1,2:-0.577671062106;SPI1:-0.588715255217;NFATC1..3:-0.594589480662;UFEwm:-0.600808949721;SPIB:-0.617257170814;TBX4,5:-0.620694142873;HIF1A:-0.657937243987;SNAI1..3:-0.678971713539;HNF1A:-0.690695712215;TP53:-0.714527853206;FOS_FOS{B,L1}_JUN{B,D}:-0.779440132672;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.812886790901;IKZF1:-0.819553257523;XCPE1{core}:-0.843881714332;PAX8:-0.849788395159;RXR{A,B,G}:-0.89548432134;FOSL2:-0.897554956052;HLF:-0.905892135672;BACH2:-0.906981697378;TAL1_TCF{3,4,12}:-0.913175130513;PAX3,7:-0.950377248854;HES1:-0.999688529926;SRF:-1.06007833211;NFKB1_REL_RELA:-1.10459072023;ELK1,4_GABP{A,B1}:-1.10933359302;AIRE:-1.11484955283;POU2F1..3:-1.12246119014;TEAD1:-1.12429041399;E2F1..5:-1.13970412542;RUNX1..3:-1.17959843392;STAT5{A,B}:-1.19266435633;ELF1,2,4:-1.20598777366;ESR1:-1.26538625202;GLI1..3:-1.48876422164;ZNF148:-1.53250985789;RXRA_VDR{dimer}:-1.59453711162;NR6A1:-1.60590149153;ALX4:-1.61947738292;MYB:-1.64755532961;NR1H4:-1.77104666439;NKX2-2,8:-1.84667667012;HOX{A5,B5}:-2.67311484767;EN1,2:-2.67349751096;PPARG:-3.35740487737 | |top_motifs=SOX5:3.80687030592;SOX2:3.13817007678;DBP:3.02783386802;MTF1:2.98002642157;NFIX:2.90636218021;NHLH1,2:2.82641536774;ATF2:2.82399005716;OCT4_SOX2{dimer}:2.76678040554;MYFfamily:2.66266272077;MED-1{core}:2.65451961185;REST:2.63590208942;ZFP161:2.54322671622;SOX{8,9,10}:2.50037740424;NKX3-2:2.49538535615;SOX17:2.29107135559;XBP1:2.27686750756;CUX2:2.17919660119;ZBTB6:2.15676255223;EGR1..3:2.15068771226;PRRX1,2:2.08085540914;HOXA9_MEIS1:2.06163155268;MTE{core}:2.03224735918;HIC1:2.02508647331;FOXP3:1.93291512844;AHR_ARNT_ARNT2:1.91512161847;RREB1:1.8440868518;NKX6-1,2:1.79783518821;TGIF1:1.77583832472;SMAD1..7,9:1.76456290287;RBPJ:1.72878689781;RFX2..5_RFXANK_RFXAP:1.72804660146;JUN:1.72479265658;TFAP2B:1.72258691867;AR:1.71190881651;PRDM1:1.70933103892;GTF2I:1.69690678747;ONECUT1,2:1.6952106945;RFX1:1.68426902589;ADNP_IRX_SIX_ZHX:1.65666282911;LMO2:1.64300308231;FOXM1:1.63136827608;NANOG:1.60467210516;STAT2,4,6:1.52651616665;MAFB:1.4997635001;GATA4:1.43782668074;MZF1:1.43329045789;ALX1:1.41786759112;PAX5:1.41055167147;PAX6:1.38973945055;FOX{F1,F2,J1}:1.32830478501;BREu{core}:1.27762737355;HOX{A6,A7,B6,B7}:1.27289153171;PATZ1:1.26865316471;POU6F1:1.25861120544;ARID5B:1.22600635927;LEF1_TCF7_TCF7L1,2:1.20735446746;VSX1,2:1.18115896105;STAT1,3:1.17996032227;FOXD3:1.13496133686;CDC5L:1.12271897031;MAZ:1.10098614832;MYBL2:1.09391495619;POU5F1:1.08784000189;NRF1:1.08783013264;NKX2-3_NKX2-5:1.08225094877;SP1:1.02722482153;HOX{A4,D4}:1.00437195496;KLF4:0.99870101757;TFAP2{A,C}:0.989219903196;GFI1B:0.970221118383;ZNF423:0.969465313964;HBP1_HMGB_SSRP1_UBTF:0.935107595574;HMGA1,2:0.911043480133;SREBF1,2:0.890617014378;LHX3,4:0.870844245034;ESRRA:0.854394007098;TLX2:0.851828984186;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.81588506315;NR3C1:0.812946297136;ZBTB16:0.812506144162;EP300:0.765674255562;TFDP1:0.755565561065;ZNF384:0.755362896917;FOXP1:0.711734900415;SPZ1:0.699629227083;POU3F1..4:0.678925524523;HMX1:0.662640734587;RORA:0.647469361701;FOX{D1,D2}:0.629986060656;GZF1:0.562156005641;TLX1..3_NFIC{dimer}:0.548908905236;EBF1:0.547703071776;CRX:0.533576912982;IRF7:0.521634441981;CDX1,2,4:0.513275657093;CREB1:0.503954912209;PBX1:0.502477296595;ZNF143:0.475195913193;BPTF:0.433710354444;NFIL3:0.403868622004;IKZF2:0.398947083907;GTF2A1,2:0.378682896602;HAND1,2:0.37377900843;FOXN1:0.347572676392;MEF2{A,B,C,D}:0.323291892259;GFI1:0.315119536218;FOX{I1,J2}:0.281953541259;ATF5_CREB3:0.274172879165;ZEB1:0.27323904981;PAX2:0.224190143526;PDX1:0.201050530109;FOXQ1:0.195356174299;T:0.190905623229;PAX1,9:0.1691065042;ZNF238:0.052609567513;MYOD1:0.0503710938191;NFE2L1:0.0455884124814;PAX4:-0.0389515973306;ATF4:-0.0519871205337;CEBPA,B_DDIT3:-0.0520333114621;GCM1,2:-0.0606957082768;IRF1,2:-0.0729283552109;NR5A1,2:-0.0733236477256;ZIC1..3:-0.0817767985369;NFY{A,B,C}:-0.0857911868606;YY1:-0.15262764387;TFAP4:-0.245464790813;FOXL1:-0.283026089173;bHLH_family:-0.289081090244;DMAP1_NCOR{1,2}_SMARC:-0.297947185985;NANOG{mouse}:-0.380325025819;FOXO1,3,4:-0.385333107504;TEF:-0.445053831301;TOPORS:-0.45379964062;NFE2:-0.453832119711;TBP:-0.459691486038;ATF6:-0.498497965042;GATA6:-0.5082762035;TFCP2:-0.511140355298;NKX2-1,4:-0.519289594837;NFE2L2:-0.527031554205;ETS1,2:-0.52982005059;HNF4A_NR2F1,2:-0.531552411146;EVI1:-0.533200657872;PITX1..3:-0.536173317897;NKX3-1:-0.541327262789;FOXA2:-0.551263490709;POU1F1:-0.572615105404;HSF1,2:-0.577671062106;SPI1:-0.588715255217;NFATC1..3:-0.594589480662;UFEwm:-0.600808949721;SPIB:-0.617257170814;TBX4,5:-0.620694142873;HIF1A:-0.657937243987;SNAI1..3:-0.678971713539;HNF1A:-0.690695712215;TP53:-0.714527853206;FOS_FOS{B,L1}_JUN{B,D}:-0.779440132672;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.812886790901;IKZF1:-0.819553257523;XCPE1{core}:-0.843881714332;PAX8:-0.849788395159;RXR{A,B,G}:-0.89548432134;FOSL2:-0.897554956052;HLF:-0.905892135672;BACH2:-0.906981697378;TAL1_TCF{3,4,12}:-0.913175130513;PAX3,7:-0.950377248854;HES1:-0.999688529926;SRF:-1.06007833211;NFKB1_REL_RELA:-1.10459072023;ELK1,4_GABP{A,B1}:-1.10933359302;AIRE:-1.11484955283;POU2F1..3:-1.12246119014;TEAD1:-1.12429041399;E2F1..5:-1.13970412542;RUNX1..3:-1.17959843392;STAT5{A,B}:-1.19266435633;ELF1,2,4:-1.20598777366;ESR1:-1.26538625202;GLI1..3:-1.48876422164;ZNF148:-1.53250985789;RXRA_VDR{dimer}:-1.59453711162;NR6A1:-1.60590149153;ALX4:-1.61947738292;MYB:-1.64755532961;NR1H4:-1.77104666439;NKX2-2,8:-1.84667667012;HOX{A5,B5}:-2.67311484767;EN1,2:-2.67349751096;PPARG:-3.35740487737 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10175-103C4;search_select_hide=table117:FF:10175-103C4 | |||
}} | }} | ||
Latest revision as of 12:25, 3 June 2020
| Name: | globus pallidus - adult, donor10196 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13801 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13801
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13801
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0574 |
| 10 | 10 | 0.0323 |
| 100 | 100 | 0.287 |
| 101 | 101 | 0.646 |
| 102 | 102 | 0.803 |
| 103 | 103 | 0.0592 |
| 104 | 104 | 0.0463 |
| 105 | 105 | 0.12 |
| 106 | 106 | 0.0271 |
| 107 | 107 | 0.158 |
| 108 | 108 | 0.932 |
| 109 | 109 | 0.00337 |
| 11 | 11 | 0.012 |
| 110 | 110 | 0.0524 |
| 111 | 111 | 0.233 |
| 112 | 112 | 0.426 |
| 113 | 113 | 0.353 |
| 114 | 114 | 0.252 |
| 115 | 115 | 0.606 |
| 116 | 116 | 0.0889 |
| 117 | 117 | 0.00539 |
| 118 | 118 | 0.192 |
| 119 | 119 | 0.198 |
| 12 | 12 | 0.545 |
| 120 | 120 | 0.109 |
| 121 | 121 | 0.3 |
| 122 | 122 | 0.769 |
| 123 | 123 | 0.803 |
| 124 | 124 | 0.155 |
| 125 | 125 | 0.631 |
| 126 | 126 | 0.0937 |
| 127 | 127 | 0.502 |
| 128 | 128 | 0.237 |
| 129 | 129 | 0.631 |
| 13 | 13 | 0.00233 |
| 130 | 130 | 0.18 |
| 131 | 131 | 0.00901 |
| 132 | 132 | 0.58 |
| 133 | 133 | 4.34902e-4 |
| 134 | 134 | 0.809 |
| 135 | 135 | 0.0868 |
| 136 | 136 | 0.00438 |
| 137 | 137 | 0.662 |
| 138 | 138 | 0.859 |
| 139 | 139 | 0.219 |
| 14 | 14 | 0.883 |
| 140 | 140 | 0.841 |
| 141 | 141 | 0.34 |
| 142 | 142 | 0.969 |
| 143 | 143 | 0.0224 |
| 144 | 144 | 0.918 |
| 145 | 145 | 0.262 |
| 146 | 146 | 0.492 |
| 147 | 147 | 0.731 |
| 148 | 148 | 0.556 |
| 149 | 149 | 0.235 |
| 15 | 15 | 0.0721 |
| 150 | 150 | 0.138 |
| 151 | 151 | 0.658 |
| 152 | 152 | 0.0757 |
| 153 | 153 | 0.911 |
| 154 | 154 | 0.275 |
| 155 | 155 | 0.633 |
| 156 | 156 | 0.858 |
| 157 | 157 | 0.546 |
| 158 | 158 | 0.272 |
| 159 | 159 | 0.033 |
| 16 | 16 | 0.043 |
| 160 | 160 | 0.285 |
| 161 | 161 | 0.166 |
| 162 | 162 | 0.733 |
| 163 | 163 | 0.621 |
| 164 | 164 | 0.00435 |
| 165 | 165 | 0.054 |
| 166 | 166 | 0.843 |
| 167 | 167 | 0.817 |
| 168 | 168 | 0.446 |
| 169 | 169 | 0.0139 |
| 17 | 17 | 0.111 |
| 18 | 18 | 0.0834 |
| 19 | 19 | 0.279 |
| 2 | 2 | 0.842 |
| 20 | 20 | 0.0842 |
| 21 | 21 | 0.0491 |
| 22 | 22 | 0.202 |
| 23 | 23 | 0.556 |
| 24 | 24 | 0.0255 |
| 25 | 25 | 0.499 |
| 26 | 26 | 6.76e-4 |
| 27 | 27 | 0.849 |
| 28 | 28 | 0.872 |
| 29 | 29 | 0.00502 |
| 3 | 3 | 0.0252 |
| 30 | 30 | 0.832 |
| 31 | 31 | 0.836 |
| 32 | 32 | 0.0167 |
| 33 | 33 | 0.0711 |
| 34 | 34 | 0.7 |
| 35 | 35 | 0.575 |
| 36 | 36 | 0.272 |
| 37 | 37 | 0.0257 |
| 38 | 38 | 0.39 |
| 39 | 39 | 0.326 |
| 4 | 4 | 0.927 |
| 40 | 40 | 0.112 |
| 41 | 41 | 0.562 |
| 42 | 42 | 0.236 |
| 43 | 43 | 0.131 |
| 44 | 44 | 0.0754 |
| 45 | 45 | 0.741 |
| 46 | 46 | 0.0269 |
| 47 | 47 | 0.07 |
| 48 | 48 | 0.0315 |
| 49 | 49 | 0.227 |
| 5 | 5 | 0.994 |
| 50 | 50 | 0.359 |
| 51 | 51 | 0.438 |
| 52 | 52 | 0.703 |
| 53 | 53 | 0.821 |
| 54 | 54 | 0.426 |
| 55 | 55 | 0.578 |
| 56 | 56 | 0.548 |
| 57 | 57 | 0.306 |
| 58 | 58 | 0.345 |
| 59 | 59 | 0.0438 |
| 6 | 6 | 0.902 |
| 60 | 60 | 0.0896 |
| 61 | 61 | 0.0573 |
| 62 | 62 | 0.228 |
| 63 | 63 | 0.277 |
| 64 | 64 | 0.169 |
| 65 | 65 | 0.28 |
| 66 | 66 | 0.124 |
| 67 | 67 | 0.22 |
| 68 | 68 | 0.313 |
| 69 | 69 | 0.53 |
| 7 | 7 | 0.0965 |
| 70 | 70 | 0.0281 |
| 71 | 71 | 0.00963 |
| 72 | 72 | 0.317 |
| 73 | 73 | 0.0338 |
| 74 | 74 | 0.992 |
| 75 | 75 | 0.0102 |
| 76 | 76 | 0.287 |
| 77 | 77 | 0.12 |
| 78 | 78 | 0.00557 |
| 79 | 79 | 0.174 |
| 8 | 8 | 0.0571 |
| 80 | 80 | 0.6 |
| 81 | 81 | 0.458 |
| 82 | 82 | 0.753 |
| 83 | 83 | 0.0758 |
| 84 | 84 | 0.479 |
| 85 | 85 | 0.447 |
| 86 | 86 | 0.14 |
| 87 | 87 | 7.83453e-4 |
| 88 | 88 | 0.642 |
| 89 | 89 | 0.317 |
| 9 | 9 | 0.451 |
| 90 | 90 | 0.146 |
| 91 | 91 | 0.681 |
| 92 | 92 | 0.641 |
| 93 | 93 | 0.771 |
| 94 | 94 | 0.152 |
| 95 | 95 | 0.0265 |
| 96 | 96 | 0.872 |
| 97 | 97 | 0.763 |
| 98 | 98 | 0.173 |
| 99 | 99 | 0.491 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13801
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010161 human globus pallidus - adult donor sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000479 (tissue)
0001875 (globus pallidus)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0006514 (pallidum)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010161 (human globus pallidus - adult donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
