FF:10031-101E4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004819 | ||
|accession_numbers=CAGE;DRX008736;DRR009608;DRZ001033;DRZ002418;DRZ012383;DRZ013768 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010031 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10637.10031-101E4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10637.10031-101E4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10637.10031-101E4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10637.10031-101E4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10637.10031-101E4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10031-101E4 | |id=FF:10031-101E4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010031 | ||
|is_obsolete= | |||
|library_id=CNhs10637 | |||
|library_id_phase_based=2:CNhs10637 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10031 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10031 | |||
|name=temporal lobe, adult, pool1 | |name=temporal lobe, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10637,LSID657,release008,COMPLETED | |profile_hcage=CNhs10637,LSID657,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636564 | |rna_catalog_number=Cat:636564 | ||
| Line 54: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.01E+06 | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.85531308809069e-311!GO:0005737;cytoplasm;4.41193243068622e-159!GO:0044444;cytoplasmic part;2.05402909485358e-107!GO:0043226;organelle;2.2513198965705e-81!GO:0043229;intracellular organelle;6.08189866734704e-81!GO:0043227;membrane-bound organelle;1.20276713073507e-77!GO:0043231;intracellular membrane-bound organelle;1.59625812510164e-77!GO:0005515;protein binding;6.74073930333027e-63!GO:0044422;organelle part;1.49910490492771e-61!GO:0044446;intracellular organelle part;1.574081663059e-60!GO:0032991;macromolecular complex;3.31438325368084e-54!GO:0005739;mitochondrion;8.05658872876435e-44!GO:0016043;cellular component organization and biogenesis;4.26543165330301e-43!GO:0031090;organelle membrane;5.45858703199479e-43!GO:0015031;protein transport;3.67908152865733e-36!GO:0033036;macromolecule localization;6.64439941228374e-36!GO:0030529;ribonucleoprotein complex;1.9879903180174e-35!GO:0044429;mitochondrial part;2.78610263587556e-33!GO:0008104;protein localization;3.23742616943419e-33!GO:0045184;establishment of protein localization;2.10851270047735e-32!GO:0043234;protein complex;3.9166337170201e-31!GO:0003723;RNA binding;3.0338942169319e-30!GO:0046907;intracellular transport;6.51446724685317e-29!GO:0031975;envelope;8.96794956555149e-28!GO:0031967;organelle envelope;1.41442755525788e-27!GO:0051649;establishment of cellular localization;4.57474765042635e-27!GO:0051641;cellular localization;6.75002167796669e-27!GO:0016192;vesicle-mediated transport;8.32990103811542e-27!GO:0043233;organelle lumen;8.32990103811542e-27!GO:0031974;membrane-enclosed lumen;8.32990103811542e-27!GO:0005740;mitochondrial envelope;8.86969264731727e-24!GO:0031966;mitochondrial membrane;2.75728699030169e-23!GO:0044428;nuclear part;5.22292959240342e-23!GO:0019538;protein metabolic process;6.01223996692779e-23!GO:0005829;cytosol;7.15330847478577e-22!GO:0005840;ribosome;1.15762355501092e-21!GO:0005794;Golgi apparatus;1.22352912546857e-21!GO:0006119;oxidative phosphorylation;2.26900903383534e-21!GO:0019866;organelle inner membrane;8.32282397259566e-21!GO:0006886;intracellular protein transport;1.05381288102379e-20!GO:0031982;vesicle;2.52280411300392e-20!GO:0005743;mitochondrial inner membrane;2.68250656545048e-20!GO:0044260;cellular macromolecule metabolic process;5.79589999435125e-20!GO:0031988;membrane-bound vesicle;6.70412359751142e-20!GO:0031410;cytoplasmic vesicle;1.22956090281224e-19!GO:0016023;cytoplasmic membrane-bound vesicle;2.47280350720233e-19!GO:0044267;cellular protein metabolic process;2.9294037233553e-19!GO:0044238;primary metabolic process;8.75176685008859e-19!GO:0016071;mRNA metabolic process;1.59228243648358e-18!GO:0006396;RNA processing;5.67516816641644e-18!GO:0006996;organelle organization and biogenesis;1.19987888053315e-17!GO:0003735;structural constituent of ribosome;1.59646149551512e-17!GO:0044237;cellular metabolic process;2.44097292457682e-17!GO:0008380;RNA splicing;3.88004468844909e-17!GO:0009058;biosynthetic process;9.32080821451971e-17!GO:0012505;endomembrane system;3.73578093184491e-16!GO:0044455;mitochondrial membrane part;4.25254927764194e-16!GO:0006397;mRNA processing;1.50616497192696e-15!GO:0005746;mitochondrial respiratory chain;1.89292690668464e-15!GO:0006412;translation;2.6496798863424e-15!GO:0043170;macromolecule metabolic process;2.66927445413104e-15!GO:0065003;macromolecular complex assembly;5.85630097769055e-15!GO:0006810;transport;7.86604191283977e-15!GO:0033279;ribosomal subunit;1.28422808688879e-14!GO:0000166;nucleotide binding;1.39564467932845e-14!GO:0006512;ubiquitin cycle;2.41067853089941e-14!GO:0043412;biopolymer modification;5.02649026907812e-14!GO:0050136;NADH dehydrogenase (quinone) activity;8.98217201616847e-14!GO:0003954;NADH dehydrogenase activity;8.98217201616847e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.98217201616847e-14!GO:0031981;nuclear lumen;1.20676835705897e-13!GO:0006464;protein modification process;1.20676835705897e-13!GO:0007399;nervous system development;1.2485787414245e-13!GO:0048770;pigment granule;1.25944221723154e-13!GO:0042470;melanosome;1.25944221723154e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.45303069947515e-13!GO:0022607;cellular component assembly;2.49310040087307e-13!GO:0007264;small GTPase mediated signal transduction;3.79823212685571e-13!GO:0043687;post-translational protein modification;4.38783888991418e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.34847731360724e-13!GO:0044249;cellular biosynthetic process;5.56810493248344e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;5.82768843850054e-13!GO:0016462;pyrophosphatase activity;7.02248268300877e-13!GO:0016874;ligase activity;8.54376502838775e-13!GO:0045045;secretory pathway;1.17423163458851e-12!GO:0030135;coated vesicle;1.46473751914213e-12!GO:0009059;macromolecule biosynthetic process;1.60313049947642e-12!GO:0017111;nucleoside-triphosphatase activity;4.01246856138735e-12!GO:0031980;mitochondrial lumen;4.09330192414996e-12!GO:0005759;mitochondrial matrix;4.09330192414996e-12!GO:0005681;spliceosome;5.08360104304141e-12!GO:0030964;NADH dehydrogenase complex (quinone);5.57093408291665e-12!GO:0045271;respiratory chain complex I;5.57093408291665e-12!GO:0005747;mitochondrial respiratory chain complex I;5.57093408291665e-12!GO:0051179;localization;8.20134254567876e-12!GO:0042775;organelle ATP synthesis coupled electron transport;9.66885908282844e-12!GO:0042773;ATP synthesis coupled electron transport;9.66885908282844e-12!GO:0032553;ribonucleotide binding;9.66885908282844e-12!GO:0032555;purine ribonucleotide binding;9.66885908282844e-12!GO:0051234;establishment of localization;9.72939846998664e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.5085495686818e-11!GO:0043005;neuron projection;1.53866703710461e-11!GO:0005783;endoplasmic reticulum;4.11680071840341e-11!GO:0005634;nucleus;4.89164183947571e-11!GO:0019829;cation-transporting ATPase activity;5.57249112453609e-11!GO:0017076;purine nucleotide binding;6.28875715673251e-11!GO:0044431;Golgi apparatus part;7.22645292446342e-11!GO:0048193;Golgi vesicle transport;7.33782689819867e-11!GO:0006457;protein folding;1.26192281711825e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.81404488887256e-10!GO:0005768;endosome;3.03556539687458e-10!GO:0008092;cytoskeletal protein binding;3.11024151932501e-10!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.72454462088033e-10!GO:0044445;cytosolic part;4.16859467902929e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.20705493613358e-10!GO:0006793;phosphorus metabolic process;4.95485080110702e-10!GO:0006796;phosphate metabolic process;4.95485080110702e-10!GO:0030695;GTPase regulator activity;6.52491537714261e-10!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.09229472145e-10!GO:0051186;cofactor metabolic process;1.01299556714946e-09!GO:0003924;GTPase activity;1.19411740207994e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.7026802869137e-09!GO:0005083;small GTPase regulator activity;3.70922648915766e-09!GO:0030136;clathrin-coated vesicle;3.85375666818572e-09!GO:0016044;membrane organization and biogenesis;4.15400252060638e-09!GO:0015935;small ribosomal subunit;4.91872355351651e-09!GO:0051082;unfolded protein binding;6.05384520295746e-09!GO:0006605;protein targeting;6.2369091972183e-09!GO:0015986;ATP synthesis coupled proton transport;7.83706654093949e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.83706654093949e-09!GO:0005654;nucleoplasm;1.1820397860335e-08!GO:0008639;small protein conjugating enzyme activity;1.20586073234185e-08!GO:0008134;transcription factor binding;1.32073432408192e-08!GO:0008565;protein transporter activity;1.81868277354056e-08!GO:0051603;proteolysis involved in cellular protein catabolic process;1.93093108945392e-08!GO:0004842;ubiquitin-protein ligase activity;2.23283957004782e-08!GO:0005525;GTP binding;2.30152365567012e-08!GO:0000502;proteasome complex (sensu Eukaryota);2.44191267722741e-08!GO:0022618;protein-RNA complex assembly;2.44349564516744e-08!GO:0019787;small conjugating protein ligase activity;2.74603072871527e-08!GO:0000139;Golgi membrane;2.77791140252651e-08!GO:0019941;modification-dependent protein catabolic process;2.97948758190608e-08!GO:0043632;modification-dependent macromolecule catabolic process;2.97948758190608e-08!GO:0006511;ubiquitin-dependent protein catabolic process;3.00857251601207e-08!GO:0044265;cellular macromolecule catabolic process;3.10835770106821e-08!GO:0032940;secretion by cell;3.43494539834022e-08!GO:0044257;cellular protein catabolic process;3.81971791121136e-08!GO:0007010;cytoskeleton organization and biogenesis;4.28549267995901e-08!GO:0043283;biopolymer metabolic process;4.71529051210655e-08!GO:0008135;translation factor activity, nucleic acid binding;5.929506031554e-08!GO:0044451;nucleoplasm part;7.33755352261964e-08!GO:0044248;cellular catabolic process;7.43968419860767e-08!GO:0046034;ATP metabolic process;1.24313828704098e-07!GO:0006732;coenzyme metabolic process;2.15690418633483e-07!GO:0016881;acid-amino acid ligase activity;2.25316462969159e-07!GO:0006461;protein complex assembly;2.31789461168782e-07!GO:0007242;intracellular signaling cascade;3.14479045953363e-07!GO:0044432;endoplasmic reticulum part;3.24330299408075e-07!GO:0030425;dendrite;3.43753294639921e-07!GO:0044440;endosomal part;3.48136685727141e-07!GO:0010008;endosome membrane;3.48136685727141e-07!GO:0009060;aerobic respiration;3.48136685727141e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.09553270022579e-07!GO:0006163;purine nucleotide metabolic process;4.20437328241032e-07!GO:0016310;phosphorylation;4.29310404204056e-07!GO:0009141;nucleoside triphosphate metabolic process;4.33044281840992e-07!GO:0043228;non-membrane-bound organelle;4.5621825565973e-07!GO:0043232;intracellular non-membrane-bound organelle;4.5621825565973e-07!GO:0006754;ATP biosynthetic process;4.77341950901311e-07!GO:0006753;nucleoside phosphate metabolic process;4.77341950901311e-07!GO:0015631;tubulin binding;5.27639628023054e-07!GO:0043285;biopolymer catabolic process;5.31044267823127e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.51466667312556e-07!GO:0009144;purine nucleoside triphosphate metabolic process;5.51466667312556e-07!GO:0019226;transmission of nerve impulse;5.57619566249741e-07!GO:0009150;purine ribonucleotide metabolic process;5.96309572312885e-07!GO:0005905;coated pit;6.39860647072325e-07!GO:0045333;cellular respiration;6.55793415674779e-07!GO:0009199;ribonucleoside triphosphate metabolic process;6.75797062064116e-07!GO:0030036;actin cytoskeleton organization and biogenesis;6.87707556506032e-07!GO:0030163;protein catabolic process;7.12181704915955e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.12181704915955e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.16680630869883e-07!GO:0032561;guanyl ribonucleotide binding;7.29973121246801e-07!GO:0019001;guanyl nucleotide binding;7.29973121246801e-07!GO:0032559;adenyl ribonucleotide binding;7.56277120921713e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.01584879228401e-07!GO:0048475;coated membrane;9.06415884495417e-07!GO:0030117;membrane coat;9.06415884495417e-07!GO:0005761;mitochondrial ribosome;9.33552742923611e-07!GO:0000313;organellar ribosome;9.33552742923611e-07!GO:0006164;purine nucleotide biosynthetic process;9.65690298182433e-07!GO:0015934;large ribosomal subunit;1.20058851477234e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.37674708377387e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.38596929095771e-06!GO:0048471;perinuclear region of cytoplasm;1.48860114029025e-06!GO:0009259;ribonucleotide metabolic process;1.57148071797887e-06!GO:0019717;synaptosome;1.72571604635319e-06!GO:0009057;macromolecule catabolic process;1.97706877142832e-06!GO:0008287;protein serine/threonine phosphatase complex;2.19234521236689e-06!GO:0009055;electron carrier activity;2.20364367158871e-06!GO:0005524;ATP binding;2.60806634553005e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.76077472858151e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.76077472858151e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.76077472858151e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;3.43574222227034e-06!GO:0000375;RNA splicing, via transesterification reactions;3.43574222227034e-06!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.43574222227034e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.45880063937919e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.45880063937919e-06!GO:0008021;synaptic vesicle;3.59390775697084e-06!GO:0030029;actin filament-based process;3.62854746989371e-06!GO:0030554;adenyl nucleotide binding;3.72584698746749e-06!GO:0005789;endoplasmic reticulum membrane;4.39068096123385e-06!GO:0006446;regulation of translational initiation;4.39068096123385e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.53885916154833e-06!GO:0006913;nucleocytoplasmic transport;4.56812966241915e-06!GO:0009260;ribonucleotide biosynthetic process;5.7500330773023e-06!GO:0005770;late endosome;5.82050028869362e-06!GO:0006897;endocytosis;5.97407946838314e-06!GO:0010324;membrane invagination;5.97407946838314e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.01122833433284e-06!GO:0051169;nuclear transport;6.76269562601606e-06!GO:0007265;Ras protein signal transduction;7.38214050767084e-06!GO:0022890;inorganic cation transmembrane transporter activity;9.02239678837448e-06!GO:0006099;tricarboxylic acid cycle;1.02642063666814e-05!GO:0046356;acetyl-CoA catabolic process;1.02642063666814e-05!GO:0051056;regulation of small GTPase mediated signal transduction;1.13530420720722e-05!GO:0031965;nuclear membrane;1.49631202670947e-05!GO:0005798;Golgi-associated vesicle;1.65604964383374e-05!GO:0045259;proton-transporting ATP synthase complex;1.68601636478269e-05!GO:0003743;translation initiation factor activity;1.83808273406903e-05!GO:0016604;nuclear body;1.87693339550444e-05!GO:0003779;actin binding;2.0638858513597e-05!GO:0005635;nuclear envelope;2.07819195725326e-05!GO:0005769;early endosome;2.09499091231232e-05!GO:0006413;translational initiation;2.22289838591872e-05!GO:0005773;vacuole;2.27624455749303e-05!GO:0019899;enzyme binding;2.3926986535187e-05!GO:0009109;coenzyme catabolic process;2.41407258050841e-05!GO:0031252;leading edge;2.50094832894213e-05!GO:0016607;nuclear speck;3.00977732473866e-05!GO:0030120;vesicle coat;3.85054691550278e-05!GO:0030662;coated vesicle membrane;3.85054691550278e-05!GO:0005874;microtubule;3.85054691550278e-05!GO:0000902;cell morphogenesis;3.92638501464914e-05!GO:0032989;cellular structure morphogenesis;3.92638501464914e-05!GO:0006084;acetyl-CoA metabolic process;3.98742419727391e-05!GO:0008654;phospholipid biosynthetic process;4.61086169440001e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.80298702070751e-05!GO:0015399;primary active transmembrane transporter activity;4.80298702070751e-05!GO:0032446;protein modification by small protein conjugation;4.89105356456076e-05!GO:0007268;synaptic transmission;5.17293164360362e-05!GO:0015630;microtubule cytoskeleton;5.42293106289769e-05!GO:0016567;protein ubiquitination;6.09238123472338e-05!GO:0003712;transcription cofactor activity;6.36492573426279e-05!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.67418322472465e-05!GO:0051187;cofactor catabolic process;7.39297236667516e-05!GO:0042623;ATPase activity, coupled;8.20877869493333e-05!GO:0048489;synaptic vesicle transport;8.40594308633543e-05!GO:0017038;protein import;9.00054658003555e-05!GO:0007269;neurotransmitter secretion;9.03324263412295e-05!GO:0016301;kinase activity;9.34482215724913e-05!GO:0005730;nucleolus;9.44750157114732e-05!GO:0046467;membrane lipid biosynthetic process;0.000113301440722812!GO:0016311;dephosphorylation;0.000124792761823719!GO:0009056;catabolic process;0.000125212539141051!GO:0051188;cofactor biosynthetic process;0.00016764528273594!GO:0043492;ATPase activity, coupled to movement of substances;0.00016764528273594!GO:0006650;glycerophospholipid metabolic process;0.000175287804755689!GO:0016887;ATPase activity;0.000176491021432038!GO:0008047;enzyme activator activity;0.000176491021432038!GO:0030133;transport vesicle;0.000183103504582269!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000186657978051826!GO:0006752;group transfer coenzyme metabolic process;0.000186657978051826!GO:0008017;microtubule binding;0.00020159912369803!GO:0048699;generation of neurons;0.000210089065125681!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000218789756678526!GO:0005085;guanyl-nucleotide exchange factor activity;0.000231477849585433!GO:0004721;phosphoprotein phosphatase activity;0.000255043369291143!GO:0045055;regulated secretory pathway;0.000255091959758731!GO:0022008;neurogenesis;0.000269700752352141!GO:0048523;negative regulation of cellular process;0.000315052821582819!GO:0010467;gene expression;0.000322531954718891!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000326107342642162!GO:0030118;clathrin coat;0.000327396675602275!GO:0051128;regulation of cellular component organization and biogenesis;0.000333286103580136!GO:0000323;lytic vacuole;0.000335029327325225!GO:0005764;lysosome;0.000335029327325225!GO:0006643;membrane lipid metabolic process;0.000340074333377247!GO:0005793;ER-Golgi intermediate compartment;0.000366064167111841!GO:0016740;transferase activity;0.000366286062251556!GO:0005774;vacuolar membrane;0.000382429077952723!GO:0005096;GTPase activator activity;0.000407789409664985!GO:0030182;neuron differentiation;0.000415578194954834!GO:0015980;energy derivation by oxidation of organic compounds;0.000437918259374592!GO:0006888;ER to Golgi vesicle-mediated transport;0.000437918259374592!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000437918259374592!GO:0016791;phosphoric monoester hydrolase activity;0.000440591628154734!GO:0050767;regulation of neurogenesis;0.000446693675042762!GO:0006470;protein amino acid dephosphorylation;0.00048152610778568!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000487618552464542!GO:0007019;microtubule depolymerization;0.000524868892843269!GO:0005741;mitochondrial outer membrane;0.000535437931323623!GO:0001505;regulation of neurotransmitter levels;0.00053757445313062!GO:0019902;phosphatase binding;0.000578889554153763!GO:0031902;late endosome membrane;0.000655442977221925!GO:0030027;lamellipodium;0.000727799523416561!GO:0030426;growth cone;0.000775126452328676!GO:0046578;regulation of Ras protein signal transduction;0.000792139730271675!GO:0030427;site of polarized growth;0.00082403242306219!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000856903082549131!GO:0045786;negative regulation of progression through cell cycle;0.000860760898046829!GO:0000151;ubiquitin ligase complex;0.000883253817544348!GO:0019208;phosphatase regulator activity;0.000954990640488569!GO:0016568;chromatin modification;0.00100083908476153!GO:0019867;outer membrane;0.00119799068263563!GO:0030424;axon;0.00119928511767151!GO:0009108;coenzyme biosynthetic process;0.00122003287497028!GO:0031968;organelle outer membrane;0.00122713218096693!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0012504810929527!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00126842806472949!GO:0030054;cell junction;0.00128700995057836!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00129707472578836!GO:0000245;spliceosome assembly;0.0013016003095607!GO:0006613;cotranslational protein targeting to membrane;0.00132664541512355!GO:0005516;calmodulin binding;0.00134614135821098!GO:0051246;regulation of protein metabolic process;0.00135737871991312!GO:0000159;protein phosphatase type 2A complex;0.00137398275190342!GO:0044453;nuclear membrane part;0.00137635172268348!GO:0004674;protein serine/threonine kinase activity;0.00140789025562039!GO:0016197;endosome transport;0.00148276395586171!GO:0030384;phosphoinositide metabolic process;0.00150083502674364!GO:0009966;regulation of signal transduction;0.00154306375412555!GO:0005765;lysosomal membrane;0.0015712507946748!GO:0016126;sterol biosynthetic process;0.00164175652484553!GO:0048666;neuron development;0.00168791102803597!GO:0003714;transcription corepressor activity;0.0017561636615483!GO:0005643;nuclear pore;0.00176085694625473!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00176085694625473!GO:0006323;DNA packaging;0.00177944850106484!GO:0031114;regulation of microtubule depolymerization;0.00180292964465161!GO:0007026;negative regulation of microtubule depolymerization;0.00180292964465161!GO:0044437;vacuolar part;0.00190010950487766!GO:0004722;protein serine/threonine phosphatase activity;0.00191702625651143!GO:0048487;beta-tubulin binding;0.00195495342177605!GO:0007272;ensheathment of neurons;0.00205316136266144!GO:0008366;axon ensheathment;0.00205316136266144!GO:0009117;nucleotide metabolic process;0.00206024676777722!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00206845457706299!GO:0008601;protein phosphatase type 2A regulator activity;0.00219914126508113!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00219914126508113!GO:0043209;myelin sheath;0.00219914126508113!GO:0004667;prostaglandin-D synthase activity;0.00219914126508113!GO:0050802;circadian sleep/wake cycle, sleep;0.00219914126508113!GO:0022410;circadian sleep/wake cycle process;0.00219914126508113!GO:0042749;regulation of circadian sleep/wake cycle;0.00219914126508113!GO:0012506;vesicle membrane;0.00221530359684936!GO:0048519;negative regulation of biological process;0.00253508331264801!GO:0008610;lipid biosynthetic process;0.00254025780439277!GO:0016564;transcription repressor activity;0.00255502054912493!GO:0007266;Rho protein signal transduction;0.00256254712517251!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00258408471219695!GO:0005869;dynactin complex;0.002601717095316!GO:0019888;protein phosphatase regulator activity;0.00262151810804577!GO:0046488;phosphatidylinositol metabolic process;0.00267545277737932!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00267545277737932!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00267545277737932!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00267545277737932!GO:0043623;cellular protein complex assembly;0.00277870278744429!GO:0006644;phospholipid metabolic process;0.00295609378167341!GO:0005875;microtubule associated complex;0.00297185916268841!GO:0006403;RNA localization;0.00297185916268841!GO:0000904;cellular morphogenesis during differentiation;0.00320098622392746!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00331480992146159!GO:0004812;aminoacyl-tRNA ligase activity;0.00331480992146159!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00331480992146159!GO:0050657;nucleic acid transport;0.00331480992146159!GO:0051236;establishment of RNA localization;0.00331480992146159!GO:0050658;RNA transport;0.00331480992146159!GO:0048667;neuron morphogenesis during differentiation;0.00331480992146159!GO:0048812;neurite morphogenesis;0.00331480992146159!GO:0005048;signal sequence binding;0.00338539698628954!GO:0003729;mRNA binding;0.00354038245615766!GO:0031175;neurite development;0.00354907503109276!GO:0030030;cell projection organization and biogenesis;0.00387633444509554!GO:0048858;cell projection morphogenesis;0.00387633444509554!GO:0032990;cell part morphogenesis;0.00387633444509554!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00387633444509554!GO:0055083;monovalent inorganic anion homeostasis;0.00387633444509554!GO:0055064;chloride ion homeostasis;0.00387633444509554!GO:0030644;cellular chloride ion homeostasis;0.00387633444509554!GO:0001508;regulation of action potential;0.00390201474185857!GO:0008154;actin polymerization and/or depolymerization;0.00390201474185857!GO:0044433;cytoplasmic vesicle part;0.00397536469941662!GO:0030532;small nuclear ribonucleoprotein complex;0.00401314788380266!GO:0046474;glycerophospholipid biosynthetic process;0.00403861834875121!GO:0032011;ARF protein signal transduction;0.0040639339607121!GO:0032012;regulation of ARF protein signal transduction;0.0040639339607121!GO:0006606;protein import into nucleus;0.00444009602916572!GO:0051170;nuclear import;0.00481800787692632!GO:0031072;heat shock protein binding;0.00481800787692632!GO:0065002;intracellular protein transport across a membrane;0.00481800787692632!GO:0048167;regulation of synaptic plasticity;0.00487995540641907!GO:0030660;Golgi-associated vesicle membrane;0.00487995540641907!GO:0006414;translational elongation;0.00491882518808022!GO:0019903;protein phosphatase binding;0.0050808697312481!GO:0005839;proteasome core complex (sensu Eukaryota);0.00527468672538235!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00542148604504458!GO:0019198;transmembrane receptor protein phosphatase activity;0.00542148604504458!GO:0016050;vesicle organization and biogenesis;0.00544687500768418!GO:0003724;RNA helicase activity;0.00548922861137119!GO:0003697;single-stranded DNA binding;0.00550855813300165!GO:0005938;cell cortex;0.00568445799065062!GO:0051087;chaperone binding;0.00568445799065062!GO:0051920;peroxiredoxin activity;0.00574612452829638!GO:0043038;amino acid activation;0.00580562125028591!GO:0006418;tRNA aminoacylation for protein translation;0.00580562125028591!GO:0043039;tRNA aminoacylation;0.00580562125028591!GO:0019887;protein kinase regulator activity;0.00589862256703236!GO:0042578;phosphoric ester hydrolase activity;0.00589862256703236!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00599004978192467!GO:0051427;hormone receptor binding;0.00629043931378207!GO:0031901;early endosome membrane;0.00693303309662314!GO:0006891;intra-Golgi vesicle-mediated transport;0.00700561553268611!GO:0006695;cholesterol biosynthetic process;0.00712358821767327!GO:0030867;rough endoplasmic reticulum membrane;0.00726907316744599!GO:0051261;protein depolymerization;0.00740435840113242!GO:0004683;calmodulin-dependent protein kinase activity;0.00753218957435149!GO:0030132;clathrin coat of coated pit;0.00772342542721947!GO:0006892;post-Golgi vesicle-mediated transport;0.00776048670234609!GO:0044456;synapse part;0.00797201904814929!GO:0006665;sphingolipid metabolic process;0.00857189034519779!GO:0030658;transport vesicle membrane;0.0088426688472289!GO:0003746;translation elongation factor activity;0.00905820668256384!GO:0008026;ATP-dependent helicase activity;0.00908745171358308!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00919658390320815!GO:0008250;oligosaccharyl transferase complex;0.00942498474561326!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00953547119193947!GO:0051168;nuclear export;0.00993686617921931!GO:0050811;GABA receptor binding;0.0101265076221103!GO:0000314;organellar small ribosomal subunit;0.010208245937686!GO:0005763;mitochondrial small ribosomal subunit;0.010208245937686!GO:0050803;regulation of synapse structure and activity;0.0103148507502037!GO:0009165;nucleotide biosynthetic process;0.0103424177257135!GO:0035257;nuclear hormone receptor binding;0.0108579165862548!GO:0007017;microtubule-based process;0.0109071964523868!GO:0001578;microtubule bundle formation;0.0109799874859965!GO:0006904;vesicle docking during exocytosis;0.0110012987754611!GO:0030659;cytoplasmic vesicle membrane;0.0112202709739869!GO:0043566;structure-specific DNA binding;0.0114604659270773!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0114916189023006!GO:0007409;axonogenesis;0.012041909222226!GO:0005092;GDP-dissociation inhibitor activity;0.0132400043173534!GO:0043025;cell soma;0.0135482058637518!GO:0006612;protein targeting to membrane;0.0135513567240973!GO:0030742;GTP-dependent protein binding;0.0136193057767859!GO:0022406;membrane docking;0.0137758141495034!GO:0048278;vesicle docking;0.0137758141495034!GO:0019904;protein domain specific binding;0.0137771271826087!GO:0006916;anti-apoptosis;0.0138906040724125!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0143416850159279!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0143416850159279!GO:0005791;rough endoplasmic reticulum;0.0146304954737645!GO:0006818;hydrogen transport;0.0153559858867139!GO:0030041;actin filament polymerization;0.0154126898090482!GO:0048468;cell development;0.0155045934416771!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0157480315721602!GO:0042995;cell projection;0.0158520482260398!GO:0031301;integral to organelle membrane;0.0161608954748802!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0164508097154019!GO:0005762;mitochondrial large ribosomal subunit;0.0165026822540793!GO:0000315;organellar large ribosomal subunit;0.0165026822540793!GO:0042552;myelination;0.0166517378448289!GO:0003713;transcription coactivator activity;0.0167984522133547!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0169366686931925!GO:0030125;clathrin vesicle coat;0.0171443059513054!GO:0030665;clathrin coated vesicle membrane;0.0171443059513054!GO:0042254;ribosome biogenesis and assembly;0.0178418014684914!GO:0000287;magnesium ion binding;0.0178971707133174!GO:0019207;kinase regulator activity;0.017920514785925!GO:0004298;threonine endopeptidase activity;0.0180391889196344!GO:0050839;cell adhesion molecule binding;0.0181721542059429!GO:0008139;nuclear localization sequence binding;0.0186548230558276!GO:0016079;synaptic vesicle exocytosis;0.0187282202564369!GO:0043681;protein import into mitochondrion;0.018728364689403!GO:0006607;NLS-bearing substrate import into nucleus;0.018728364689403!GO:0030137;COPI-coated vesicle;0.0187422076102519!GO:0008361;regulation of cell size;0.0187686465239217!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0188321875294079!GO:0019894;kinesin binding;0.0190490720798022!GO:0051540;metal cluster binding;0.0192194382701929!GO:0051536;iron-sulfur cluster binding;0.0192194382701929!GO:0043021;ribonucleoprotein binding;0.0201072015977101!GO:0006595;polyamine metabolic process;0.020455147119148!GO:0031109;microtubule polymerization or depolymerization;0.0207577631538601!GO:0008186;RNA-dependent ATPase activity;0.0210741200001723!GO:0005099;Ras GTPase activator activity;0.0214610969887463!GO:0015992;proton transport;0.0218753734019718!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0224085579954462!GO:0051028;mRNA transport;0.0224608035982063!GO:0046489;phosphoinositide biosynthetic process;0.0237600282953804!GO:0035035;histone acetyltransferase binding;0.0237600282953804!GO:0008088;axon cargo transport;0.0241243957394902!GO:0044262;cellular carbohydrate metabolic process;0.024497180093434!GO:0044448;cell cortex part;0.0251073851883648!GO:0015629;actin cytoskeleton;0.0255975643517601!GO:0050435;beta-amyloid metabolic process;0.0258357399671196!GO:0007611;learning and/or memory;0.025983605424355!GO:0008286;insulin receptor signaling pathway;0.0262482563558271!GO:0043087;regulation of GTPase activity;0.0265318237836729!GO:0007005;mitochondrion organization and biogenesis;0.0266306071127511!GO:0006091;generation of precursor metabolites and energy;0.0266348661771553!GO:0033116;ER-Golgi intermediate compartment membrane;0.0266615781941872!GO:0005868;cytoplasmic dynein complex;0.026892171975361!GO:0033673;negative regulation of kinase activity;0.0270293103594871!GO:0006469;negative regulation of protein kinase activity;0.0270293103594871!GO:0016049;cell growth;0.0276445542948436!GO:0006672;ceramide metabolic process;0.028467250326051!GO:0005885;Arp2/3 protein complex;0.0291325016563332!GO:0043407;negative regulation of MAP kinase activity;0.0292824717472777!GO:0030176;integral to endoplasmic reticulum membrane;0.0292824717472777!GO:0004672;protein kinase activity;0.0300251460932701!GO:0051287;NAD binding;0.0309367204548216!GO:0007033;vacuole organization and biogenesis;0.0316995380992384!GO:0006402;mRNA catabolic process;0.0325281805177802!GO:0030258;lipid modification;0.0325613607591019!GO:0004386;helicase activity;0.0325613607591019!GO:0046519;sphingoid metabolic process;0.032582715257205!GO:0004680;casein kinase activity;0.0326874818852779!GO:0042670;retinal cone cell differentiation;0.0327214068984127!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0327214068984127!GO:0046549;retinal cone cell development;0.0327214068984127!GO:0004576;oligosaccharyl transferase activity;0.0327214068984127!GO:0001726;ruffle;0.0327616348015868!GO:0009892;negative regulation of metabolic process;0.0327998382877152!GO:0008526;phosphatidylinositol transporter activity;0.0335065527723961!GO:0042802;identical protein binding;0.0336107150556532!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0341933137686302!GO:0030119;AP-type membrane coat adaptor complex;0.0344836431703114!GO:0043284;biopolymer biosynthetic process;0.0344836431703114!GO:0016579;protein deubiquitination;0.0346588738137632!GO:0019911;structural constituent of myelin sheath;0.0359751872870265!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0362299239163376!GO:0015002;heme-copper terminal oxidase activity;0.0362299239163376!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0362299239163376!GO:0004129;cytochrome-c oxidase activity;0.0362299239163376!GO:0006887;exocytosis;0.0365836885961324!GO:0031371;ubiquitin conjugating enzyme complex;0.0382064342408735!GO:0008219;cell death;0.0382064342408735!GO:0016265;death;0.0382064342408735!GO:0031124;mRNA 3'-end processing;0.0382383997374789!GO:0030131;clathrin adaptor complex;0.038510321447009!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0391675256552816!GO:0000096;sulfur amino acid metabolic process;0.0392390148963152!GO:0007006;mitochondrial membrane organization and biogenesis;0.0410714325615021!GO:0035258;steroid hormone receptor binding;0.0410821487841874!GO:0001666;response to hypoxia;0.0412512329823205!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0417132021804874!GO:0006366;transcription from RNA polymerase II promoter;0.0419109793662869!GO:0030641;cellular hydrogen ion homeostasis;0.0421355641484317!GO:0051726;regulation of cell cycle;0.0421355641484317!GO:0030911;TPR domain binding;0.0422012373879917!GO:0005952;cAMP-dependent protein kinase complex;0.0424606620200925!GO:0006333;chromatin assembly or disassembly;0.0431264639563485!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0431264639563485!GO:0051348;negative regulation of transferase activity;0.0431317974266794!GO:0048499;synaptic vesicle membrane organization and biogenesis;0.043247494577473!GO:0030285;integral to synaptic vesicle membrane;0.043247494577473!GO:0007158;neuron adhesion;0.0433411572221923!GO:0046930;pore complex;0.0437188671189625!GO:0006661;phosphatidylinositol biosynthetic process;0.0438407640055378!GO:0048500;signal recognition particle;0.0444868252288697!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0444868252288697!GO:0008022;protein C-terminus binding;0.0444868252288697!GO:0043069;negative regulation of programmed cell death;0.0457862298289903!GO:0051539;4 iron, 4 sulfur cluster binding;0.0461064761314531!GO:0004004;ATP-dependent RNA helicase activity;0.0461064761314531!GO:0050749;apolipoprotein E receptor binding;0.0473520081553482!GO:0005078;MAP-kinase scaffold activity;0.047827004094705!GO:0007034;vacuolar transport;0.0479467789876842!GO:0006364;rRNA processing;0.048046173788378!GO:0045161;neuronal ion channel clustering;0.0480639839593595!GO:0033130;acetylcholine receptor binding;0.0481931855883151!GO:0030145;manganese ion binding;0.0481931855883151!GO:0006611;protein export from nucleus;0.0482034862428297!GO:0005100;Rho GTPase activator activity;0.0485259491827687!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0490187240983639!GO:0043254;regulation of protein complex assembly;0.0492066279225231!GO:0045296;cadherin binding;0.0499925938681869 | |||
|sample_id=10031 | |sample_id=10031 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=temporal lobe | |sample_tissue=temporal lobe | ||
|top_motifs=REST:4.69722810015;NHLH1,2:4.19796241528;EGR1..3:4.19353810719;ZBTB6:3.83005278848;ZFP161:3.65594868544;PAX5:3.63576764985;AHR_ARNT_ARNT2:3.59293325646;MTF1:3.57525170165;TFAP2B:3.56176986893;MYFfamily:3.5438180431;MTE{core}:3.50619096296;MED-1{core}:3.4676861219;RREB1:3.3536656001;PRRX1,2:3.27125189243;HIC1:3.21883796626;ATF2:3.16873912055;RFX1:3.10907251847;GTF2I:3.05746326305;SMAD1..7,9:2.6983572827;MZF1:2.67416415596;PATZ1:2.62527100237;LMO2:2.61495388813;CUX2:2.49701723257;JUN:2.44489373097;EBF1:2.39079808396;BREu{core}:2.3772512301;FOXM1:2.35118252419;SOX5:2.35093308967;PRDM1:2.33263183758;MAZ:2.28982739897;ZNF423:2.28018756865;SOX{8,9,10}:2.24861298362;GCM1,2:2.21349011543;SOX2:2.1853510087;DBP:2.13749914913;NFIX:2.01700284951;GTF2A1,2:2.01148480779;TFDP1:1.97329939156;RFX2..5_RFXANK_RFXAP:1.92650573673;OCT4_SOX2{dimer}:1.92455965593;SOX17:1.90062607689;PAX6:1.88737170737;HOXA9_MEIS1:1.86505557528;ESRRA:1.82664883544;NKX2-3_NKX2-5:1.80904007168;GFI1B:1.80160706622;POU5F1:1.79730387569;MYOD1:1.79692534449;NKX3-2:1.77498170107;NANOG:1.75751832925;EP300:1.73551656122;MAFB:1.72776445628;LEF1_TCF7_TCF7L1,2:1.67340886319;TGIF1:1.66293823711;POU6F1:1.62756864409;ZNF238:1.59210716006;TFAP2{A,C}:1.50604625061;KLF4:1.48784244273;SP1:1.47711590993;NRF1:1.38980682126;XBP1:1.30517037649;RBPJ:1.27474287376;RORA:1.2623892904;ARID5B:1.23364135203;NFIL3:1.21689499993;HOX{A4,D4}:1.19957099449;HAND1,2:1.15911525065;XCPE1{core}:1.11795878033;ZEB1:1.03263709142;FOXQ1:1.02934712354;SREBF1,2:0.994830707339;FOX{F1,F2,J1}:0.954618363581;HMX1:0.924892644236;GATA4:0.895758825352;POU3F1..4:0.844612422449;MEF2{A,B,C,D}:0.836089808271;ZNF143:0.804843286833;ZIC1..3:0.779827390022;TLX1..3_NFIC{dimer}:0.659023976349;CRX:0.655760317044;bHLH_family:0.631151140564;TBX4,5:0.605600473687;HMGA1,2:0.60365293858;CDC5L:0.589059920002;CREB1:0.586897028248;YY1:0.555593396732;SPZ1:0.536762738743;T:0.526056673213;HBP1_HMGB_SSRP1_UBTF:0.519928037472;ZNF148:0.487480663152;ADNP_IRX_SIX_ZHX:0.47032848609;TLX2:0.403132198028;VSX1,2:0.391399284758;GZF1:0.383728251194;NR5A1,2:0.377993479714;AR:0.366076224816;HOX{A6,A7,B6,B7}:0.33570537915;ATF4:0.306780384193;ESR1:0.303564694493;STAT1,3:0.247897158182;PBX1:0.22072642643;ATF5_CREB3:0.220242766173;FOX{D1,D2}:0.219522193044;TFAP4:0.218817206339;GFI1:0.212541008997;PAX2:0.205659783893;IKZF1:0.0605631505007;ONECUT1,2:0.0437168912086;ZNF384:0.028573767653;NKX6-1,2:0.0204504126676;TFCP2:-0.01575267985;MYBL2:-0.0253586333693;NFY{A,B,C}:-0.0291899003158;NFE2L2:-0.037637117785;SNAI1..3:-0.0535532919323;NR3C1:-0.0985939372501;FOXP1:-0.122861468274;PAX1,9:-0.124190724679;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.138555912581;NFE2L1:-0.166369380859;LHX3,4:-0.227933263175;FOXP3:-0.230622891877;PAX3,7:-0.230943285754;FOXN1:-0.23269998027;BPTF:-0.285526008215;IKZF2:-0.337301092062;NANOG{mouse}:-0.339312171044;IRF7:-0.344432266628;FOXL1:-0.39973637236;TOPORS:-0.413031328609;NFE2:-0.432884389404;NR1H4:-0.439111263043;GLI1..3:-0.451647787537;RXR{A,B,G}:-0.456673963036;PDX1:-0.457110772992;UFEwm:-0.464217482302;FOXA2:-0.500152850731;SPI1:-0.508545605095;ALX1:-0.576476994124;CEBPA,B_DDIT3:-0.614065919369;TEF:-0.650412240045;GATA6:-0.660542309646;STAT2,4,6:-0.670659233257;ATF6:-0.687789923248;HNF1A:-0.697180273192;SPIB:-0.730350640861;TP53:-0.731957595163;HSF1,2:-0.745769763427;ETS1,2:-0.762071882589;IRF1,2:-0.777716010323;TAL1_TCF{3,4,12}:-0.800905685214;NFATC1..3:-0.826132577139;FOSL2:-0.85043051213;BACH2:-0.874149905971;HNF4A_NR2F1,2:-0.882234934234;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.918381304922;FOXD3:-0.954337401018;FOS_FOS{B,L1}_JUN{B,D}:-0.955401203761;TEAD1:-0.966540143316;TBP:-0.974400228795;FOXO1,3,4:-0.979064932598;FOX{I1,J2}:-0.981086338212;DMAP1_NCOR{1,2}_SMARC:-0.989209966636;RUNX1..3:-0.994261141799;HES1:-1.02600594063;PPARG:-1.04889832205;PAX8:-1.08881736362;PAX4:-1.09368698956;SRF:-1.10989102509;POU1F1:-1.12679203265;HLF:-1.16533189916;NFKB1_REL_RELA:-1.19633432938;HIF1A:-1.22996409789;RXRA_VDR{dimer}:-1.30536977313;POU2F1..3:-1.32576580933;E2F1..5:-1.36163202061;ELK1,4_GABP{A,B1}:-1.37083869717;ALX4:-1.46565062892;EN1,2:-1.515524428;NKX2-2,8:-1.52472140604;MYB:-1.6698809008;STAT5{A,B}:-1.68443811557;PITX1..3:-1.81264863722;ELF1,2,4:-1.93757021041;NKX3-1:-2.24800141733;EVI1:-2.42381223707;HOX{A5,B5}:-2.51068451665;NR6A1:-2.66313911109;ZBTB16:-2.74052584398;NKX2-1,4:-2.80640123207;CDX1,2,4:-3.11410327719;AIRE:-3.18306501584 | |top_motifs=REST:4.69722810015;NHLH1,2:4.19796241528;EGR1..3:4.19353810719;ZBTB6:3.83005278848;ZFP161:3.65594868544;PAX5:3.63576764985;AHR_ARNT_ARNT2:3.59293325646;MTF1:3.57525170165;TFAP2B:3.56176986893;MYFfamily:3.5438180431;MTE{core}:3.50619096296;MED-1{core}:3.4676861219;RREB1:3.3536656001;PRRX1,2:3.27125189243;HIC1:3.21883796626;ATF2:3.16873912055;RFX1:3.10907251847;GTF2I:3.05746326305;SMAD1..7,9:2.6983572827;MZF1:2.67416415596;PATZ1:2.62527100237;LMO2:2.61495388813;CUX2:2.49701723257;JUN:2.44489373097;EBF1:2.39079808396;BREu{core}:2.3772512301;FOXM1:2.35118252419;SOX5:2.35093308967;PRDM1:2.33263183758;MAZ:2.28982739897;ZNF423:2.28018756865;SOX{8,9,10}:2.24861298362;GCM1,2:2.21349011543;SOX2:2.1853510087;DBP:2.13749914913;NFIX:2.01700284951;GTF2A1,2:2.01148480779;TFDP1:1.97329939156;RFX2..5_RFXANK_RFXAP:1.92650573673;OCT4_SOX2{dimer}:1.92455965593;SOX17:1.90062607689;PAX6:1.88737170737;HOXA9_MEIS1:1.86505557528;ESRRA:1.82664883544;NKX2-3_NKX2-5:1.80904007168;GFI1B:1.80160706622;POU5F1:1.79730387569;MYOD1:1.79692534449;NKX3-2:1.77498170107;NANOG:1.75751832925;EP300:1.73551656122;MAFB:1.72776445628;LEF1_TCF7_TCF7L1,2:1.67340886319;TGIF1:1.66293823711;POU6F1:1.62756864409;ZNF238:1.59210716006;TFAP2{A,C}:1.50604625061;KLF4:1.48784244273;SP1:1.47711590993;NRF1:1.38980682126;XBP1:1.30517037649;RBPJ:1.27474287376;RORA:1.2623892904;ARID5B:1.23364135203;NFIL3:1.21689499993;HOX{A4,D4}:1.19957099449;HAND1,2:1.15911525065;XCPE1{core}:1.11795878033;ZEB1:1.03263709142;FOXQ1:1.02934712354;SREBF1,2:0.994830707339;FOX{F1,F2,J1}:0.954618363581;HMX1:0.924892644236;GATA4:0.895758825352;POU3F1..4:0.844612422449;MEF2{A,B,C,D}:0.836089808271;ZNF143:0.804843286833;ZIC1..3:0.779827390022;TLX1..3_NFIC{dimer}:0.659023976349;CRX:0.655760317044;bHLH_family:0.631151140564;TBX4,5:0.605600473687;HMGA1,2:0.60365293858;CDC5L:0.589059920002;CREB1:0.586897028248;YY1:0.555593396732;SPZ1:0.536762738743;T:0.526056673213;HBP1_HMGB_SSRP1_UBTF:0.519928037472;ZNF148:0.487480663152;ADNP_IRX_SIX_ZHX:0.47032848609;TLX2:0.403132198028;VSX1,2:0.391399284758;GZF1:0.383728251194;NR5A1,2:0.377993479714;AR:0.366076224816;HOX{A6,A7,B6,B7}:0.33570537915;ATF4:0.306780384193;ESR1:0.303564694493;STAT1,3:0.247897158182;PBX1:0.22072642643;ATF5_CREB3:0.220242766173;FOX{D1,D2}:0.219522193044;TFAP4:0.218817206339;GFI1:0.212541008997;PAX2:0.205659783893;IKZF1:0.0605631505007;ONECUT1,2:0.0437168912086;ZNF384:0.028573767653;NKX6-1,2:0.0204504126676;TFCP2:-0.01575267985;MYBL2:-0.0253586333693;NFY{A,B,C}:-0.0291899003158;NFE2L2:-0.037637117785;SNAI1..3:-0.0535532919323;NR3C1:-0.0985939372501;FOXP1:-0.122861468274;PAX1,9:-0.124190724679;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.138555912581;NFE2L1:-0.166369380859;LHX3,4:-0.227933263175;FOXP3:-0.230622891877;PAX3,7:-0.230943285754;FOXN1:-0.23269998027;BPTF:-0.285526008215;IKZF2:-0.337301092062;NANOG{mouse}:-0.339312171044;IRF7:-0.344432266628;FOXL1:-0.39973637236;TOPORS:-0.413031328609;NFE2:-0.432884389404;NR1H4:-0.439111263043;GLI1..3:-0.451647787537;RXR{A,B,G}:-0.456673963036;PDX1:-0.457110772992;UFEwm:-0.464217482302;FOXA2:-0.500152850731;SPI1:-0.508545605095;ALX1:-0.576476994124;CEBPA,B_DDIT3:-0.614065919369;TEF:-0.650412240045;GATA6:-0.660542309646;STAT2,4,6:-0.670659233257;ATF6:-0.687789923248;HNF1A:-0.697180273192;SPIB:-0.730350640861;TP53:-0.731957595163;HSF1,2:-0.745769763427;ETS1,2:-0.762071882589;IRF1,2:-0.777716010323;TAL1_TCF{3,4,12}:-0.800905685214;NFATC1..3:-0.826132577139;FOSL2:-0.85043051213;BACH2:-0.874149905971;HNF4A_NR2F1,2:-0.882234934234;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.918381304922;FOXD3:-0.954337401018;FOS_FOS{B,L1}_JUN{B,D}:-0.955401203761;TEAD1:-0.966540143316;TBP:-0.974400228795;FOXO1,3,4:-0.979064932598;FOX{I1,J2}:-0.981086338212;DMAP1_NCOR{1,2}_SMARC:-0.989209966636;RUNX1..3:-0.994261141799;HES1:-1.02600594063;PPARG:-1.04889832205;PAX8:-1.08881736362;PAX4:-1.09368698956;SRF:-1.10989102509;POU1F1:-1.12679203265;HLF:-1.16533189916;NFKB1_REL_RELA:-1.19633432938;HIF1A:-1.22996409789;RXRA_VDR{dimer}:-1.30536977313;POU2F1..3:-1.32576580933;E2F1..5:-1.36163202061;ELK1,4_GABP{A,B1}:-1.37083869717;ALX4:-1.46565062892;EN1,2:-1.515524428;NKX2-2,8:-1.52472140604;MYB:-1.6698809008;STAT5{A,B}:-1.68443811557;PITX1..3:-1.81264863722;ELF1,2,4:-1.93757021041;NKX3-1:-2.24800141733;EVI1:-2.42381223707;HOX{A5,B5}:-2.51068451665;NR6A1:-2.66313911109;ZBTB16:-2.74052584398;NKX2-1,4:-2.80640123207;CDX1,2,4:-3.11410327719;AIRE:-3.18306501584 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10031-101E4;search_select_hide=table117:FF:10031-101E4 | |||
}} | }} | ||
Latest revision as of 12:15, 3 June 2020
| Name: | temporal lobe, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10637 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10637
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10637
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.027 |
| 10 | 10 | 0.017 |
| 100 | 100 | 0.273 |
| 101 | 101 | 0.978 |
| 102 | 102 | 0.663 |
| 103 | 103 | 0.173 |
| 104 | 104 | 0.194 |
| 105 | 105 | 0.489 |
| 106 | 106 | 0.0913 |
| 107 | 107 | 0.148 |
| 108 | 108 | 0.95 |
| 109 | 109 | 0.0108 |
| 11 | 11 | 0.0159 |
| 110 | 110 | 0.0373 |
| 111 | 111 | 0.0517 |
| 112 | 112 | 0.405 |
| 113 | 113 | 0.76 |
| 114 | 114 | 0.0725 |
| 115 | 115 | 0.964 |
| 116 | 116 | 0.236 |
| 117 | 117 | 0.00724 |
| 118 | 118 | 0.0939 |
| 119 | 119 | 0.0985 |
| 12 | 12 | 0.835 |
| 120 | 120 | 0.133 |
| 121 | 121 | 0.751 |
| 122 | 122 | 0.443 |
| 123 | 123 | 0.344 |
| 124 | 124 | 0.0803 |
| 125 | 125 | 0.134 |
| 126 | 126 | 0.0326 |
| 127 | 127 | 0.567 |
| 128 | 128 | 0.211 |
| 129 | 129 | 0.574 |
| 13 | 13 | 9.20416e-4 |
| 130 | 130 | 0.545 |
| 131 | 131 | 0.091 |
| 132 | 132 | 0.604 |
| 133 | 133 | 0.00349 |
| 134 | 134 | 0.256 |
| 135 | 135 | 0.197 |
| 136 | 136 | 0.00936 |
| 137 | 137 | 0.674 |
| 138 | 138 | 0.867 |
| 139 | 139 | 0.0861 |
| 14 | 14 | 0.967 |
| 140 | 140 | 0.117 |
| 141 | 141 | 0.221 |
| 142 | 142 | 0.963 |
| 143 | 143 | 0.0121 |
| 144 | 144 | 0.862 |
| 145 | 145 | 0.105 |
| 146 | 146 | 0.657 |
| 147 | 147 | 0.861 |
| 148 | 148 | 0.15 |
| 149 | 149 | 0.451 |
| 15 | 15 | 0.06 |
| 150 | 150 | 0.165 |
| 151 | 151 | 0.701 |
| 152 | 152 | 0.179 |
| 153 | 153 | 0.528 |
| 154 | 154 | 0.651 |
| 155 | 155 | 0.343 |
| 156 | 156 | 0.403 |
| 157 | 157 | 0.376 |
| 158 | 158 | 0.711 |
| 159 | 159 | 0.164 |
| 16 | 16 | 0.0756 |
| 160 | 160 | 0.243 |
| 161 | 161 | 0.188 |
| 162 | 162 | 0.902 |
| 163 | 163 | 0.802 |
| 164 | 164 | 0.0125 |
| 165 | 165 | 0.0252 |
| 166 | 166 | 0.776 |
| 167 | 167 | 0.167 |
| 168 | 168 | 0.716 |
| 169 | 169 | 0.00775 |
| 17 | 17 | 0.217 |
| 18 | 18 | 0.239 |
| 19 | 19 | 0.245 |
| 2 | 2 | 0.9 |
| 20 | 20 | 0.0733 |
| 21 | 21 | 0.113 |
| 22 | 22 | 0.329 |
| 23 | 23 | 0.456 |
| 24 | 24 | 0.148 |
| 25 | 25 | 0.424 |
| 26 | 26 | 1.01354e-4 |
| 27 | 27 | 0.921 |
| 28 | 28 | 0.551 |
| 29 | 29 | 0.00632 |
| 3 | 3 | 0.0157 |
| 30 | 30 | 0.438 |
| 31 | 31 | 0.946 |
| 32 | 32 | 0.0463 |
| 33 | 33 | 0.0663 |
| 34 | 34 | 0.984 |
| 35 | 35 | 0.467 |
| 36 | 36 | 0.101 |
| 37 | 37 | 0.0356 |
| 38 | 38 | 0.323 |
| 39 | 39 | 0.294 |
| 4 | 4 | 0.95 |
| 40 | 40 | 0.0749 |
| 41 | 41 | 0.45 |
| 42 | 42 | 0.119 |
| 43 | 43 | 0.106 |
| 44 | 44 | 0.115 |
| 45 | 45 | 0.922 |
| 46 | 46 | 0.056 |
| 47 | 47 | 0.0552 |
| 48 | 48 | 0.053 |
| 49 | 49 | 0.123 |
| 5 | 5 | 0.376 |
| 50 | 50 | 0.375 |
| 51 | 51 | 0.561 |
| 52 | 52 | 0.735 |
| 53 | 53 | 0.934 |
| 54 | 54 | 0.511 |
| 55 | 55 | 0.278 |
| 56 | 56 | 0.512 |
| 57 | 57 | 0.238 |
| 58 | 58 | 0.25 |
| 59 | 59 | 0.229 |
| 6 | 6 | 0.524 |
| 60 | 60 | 0.0898 |
| 61 | 61 | 0.0656 |
| 62 | 62 | 0.141 |
| 63 | 63 | 0.178 |
| 64 | 64 | 0.228 |
| 65 | 65 | 0.363 |
| 66 | 66 | 0.268 |
| 67 | 67 | 0.3 |
| 68 | 68 | 0.245 |
| 69 | 69 | 0.569 |
| 7 | 7 | 0.0463 |
| 70 | 70 | 0.0252 |
| 71 | 71 | 0.00758 |
| 72 | 72 | 0.492 |
| 73 | 73 | 0.0508 |
| 74 | 74 | 0.43 |
| 75 | 75 | 0.0217 |
| 76 | 76 | 0.266 |
| 77 | 77 | 0.318 |
| 78 | 78 | 0.00179 |
| 79 | 79 | 0.321 |
| 8 | 8 | 0.0669 |
| 80 | 80 | 0.98 |
| 81 | 81 | 0.531 |
| 82 | 82 | 0.481 |
| 83 | 83 | 0.222 |
| 84 | 84 | 0.694 |
| 85 | 85 | 0.324 |
| 86 | 86 | 0.19 |
| 87 | 87 | 0.0177 |
| 88 | 88 | 0.851 |
| 89 | 89 | 0.681 |
| 9 | 9 | 0.641 |
| 90 | 90 | 0.018 |
| 91 | 91 | 0.331 |
| 92 | 92 | 0.407 |
| 93 | 93 | 0.827 |
| 94 | 94 | 0.0596 |
| 95 | 95 | 0.0301 |
| 96 | 96 | 0.955 |
| 97 | 97 | 0.799 |
| 98 | 98 | 0.18 |
| 99 | 99 | 0.949 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10637
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010031 (human temporal lobe - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
