FF:11594-120H1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004840 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004840 | ||
|accession_numbers=CAGE;DRX008431;DRR009303;DRZ000728;DRZ002113;DRZ012078;DRZ013463 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037039;DRR041405;DRZ007047 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|comment=Previously: | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000153 | ||
|comment=Previously: | |||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor2.CNhs12086.11594-120H1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor2.CNhs12086.11594-120H1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor2.CNhs12086.11594-120H1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor2.CNhs12086.11594-120H1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor2.CNhs12086.11594-120H1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11594-120H1 | |id=FF:11594-120H1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000153 | ||
|is_obsolete= | |||
|library_id=CNhs12086 | |||
|library_id_phase_based=2:CNhs12086 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11594 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GATCAG.11594 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11594 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GATCAG.11594 | |||
|name=Renal Glomerular Endothelial Cells, donor2 | |name=Renal Glomerular Endothelial Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12086,LSID838,release011,COMPLETED | |profile_hcage=CNhs12086,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0331524961410411,0,-0.0983043400721856,0.243598373017462,0,0,0,0,0,0,0,0,0,0,0,0.0682206429897042,0,0.219726922189456,0,0,0,0.0341103214948521,0,0.51074852405867,0,0,0.0461012023424661,0,0,0,0,0,0,0,0,0,0,0,0,0.0164186119715313,0.127165533945345,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.127165533945345,0.0682206429897042,0.0192888942952737,0.0682206429897042,-0.0287717182529009,0,0,0.029821906732248,0,0,0,0,0,0,0,0,0.0682206429897042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228390557168234,0,0,0,0.201591288355317,0.230168847390804,0,0,0,0,-0.0980353512377064,0.0821580869628986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0163294887802666,0,0,0,-0.00650624883088957,-0.179494384956907,0,0,0.0682206429897042,0,0,0 | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC4005 | |rna_catalog_number=SC4005 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=120H1 | |rna_tube_id=120H1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.GATCAG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.15859377796142e-230!GO:0005737;cytoplasm;8.377865395848e-194!GO:0043226;organelle;3.93464352699521e-185!GO:0043229;intracellular organelle;9.03649823746238e-185!GO:0043231;intracellular membrane-bound organelle;3.71332469246626e-182!GO:0043227;membrane-bound organelle;5.85060954425455e-182!GO:0044444;cytoplasmic part;1.86994266398311e-148!GO:0044422;organelle part;4.21248403159992e-142!GO:0044446;intracellular organelle part;1.23127252898215e-140!GO:0032991;macromolecular complex;4.28473899606634e-91!GO:0044237;cellular metabolic process;3.30176890497317e-83!GO:0044238;primary metabolic process;3.30176890497317e-83!GO:0030529;ribonucleoprotein complex;1.86507606211481e-81!GO:0005739;mitochondrion;1.83809638001691e-80!GO:0043170;macromolecule metabolic process;1.23041136503933e-74!GO:0005515;protein binding;1.87497931520619e-72!GO:0043233;organelle lumen;2.00601109741792e-66!GO:0031974;membrane-enclosed lumen;2.00601109741792e-66!GO:0005634;nucleus;1.75635550372381e-60!GO:0003723;RNA binding;1.6110673384933e-59!GO:0044428;nuclear part;4.0341995549947e-59!GO:0031090;organelle membrane;2.41287479420102e-57!GO:0044429;mitochondrial part;1.71728059278304e-54!GO:0005840;ribosome;2.67985370621033e-53!GO:0019538;protein metabolic process;3.02361861503188e-53!GO:0003735;structural constituent of ribosome;1.68619916585106e-47!GO:0006412;translation;2.83300953441659e-47!GO:0044260;cellular macromolecule metabolic process;3.61463763293312e-47!GO:0031967;organelle envelope;5.59670216298022e-47!GO:0044267;cellular protein metabolic process;5.59670216298022e-47!GO:0031975;envelope;1.44798264554645e-46!GO:0043234;protein complex;1.31096416753954e-45!GO:0016043;cellular component organization and biogenesis;2.55802736413693e-45!GO:0009058;biosynthetic process;4.08813471949689e-42!GO:0033279;ribosomal subunit;2.15012590138278e-41!GO:0005829;cytosol;1.54808343512595e-40!GO:0006396;RNA processing;1.30721531799188e-39!GO:0044249;cellular biosynthetic process;1.331884004684e-39!GO:0015031;protein transport;4.92346853498811e-39!GO:0043283;biopolymer metabolic process;8.89542804312053e-39!GO:0033036;macromolecule localization;3.27169288884621e-38!GO:0005740;mitochondrial envelope;7.65666906514626e-38!GO:0009059;macromolecule biosynthetic process;1.32653705550673e-37!GO:0031981;nuclear lumen;3.40232698524582e-36!GO:0045184;establishment of protein localization;5.23568874052096e-36!GO:0008104;protein localization;7.1827074880069e-36!GO:0031966;mitochondrial membrane;1.19239605662005e-35!GO:0006996;organelle organization and biogenesis;8.48602385048335e-33!GO:0019866;organelle inner membrane;9.41050742353601e-33!GO:0043228;non-membrane-bound organelle;1.96012325982407e-32!GO:0043232;intracellular non-membrane-bound organelle;1.96012325982407e-32!GO:0046907;intracellular transport;5.89968380413365e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.97199627970649e-31!GO:0010467;gene expression;3.98315750438201e-31!GO:0005743;mitochondrial inner membrane;7.27282307037918e-31!GO:0065003;macromolecular complex assembly;7.42920791074901e-30!GO:0016071;mRNA metabolic process;1.04164304345158e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.55137053560507e-29!GO:0008380;RNA splicing;1.92275991720674e-28!GO:0022607;cellular component assembly;8.93499544166952e-27!GO:0006886;intracellular protein transport;2.74773430076961e-26!GO:0006397;mRNA processing;9.24890207523342e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.77986210948301e-25!GO:0006259;DNA metabolic process;3.9181787174515e-24!GO:0044445;cytosolic part;5.45629286968297e-24!GO:0006119;oxidative phosphorylation;6.52405194891391e-23!GO:0044455;mitochondrial membrane part;1.59790493948314e-22!GO:0015934;large ribosomal subunit;2.10090318611073e-22!GO:0000166;nucleotide binding;2.99320071586098e-22!GO:0012505;endomembrane system;1.07032308394566e-21!GO:0005654;nucleoplasm;1.25462761574114e-21!GO:0051649;establishment of cellular localization;3.44319777840538e-21!GO:0005681;spliceosome;5.24651295627874e-21!GO:0007049;cell cycle;5.75236578583385e-21!GO:0051641;cellular localization;7.1632823628272e-21!GO:0031980;mitochondrial lumen;1.34131197102509e-20!GO:0005759;mitochondrial matrix;1.34131197102509e-20!GO:0015935;small ribosomal subunit;4.40333164551197e-20!GO:0005783;endoplasmic reticulum;1.46997907110795e-19!GO:0005746;mitochondrial respiratory chain;8.05520235806828e-19!GO:0006457;protein folding;5.05837900686643e-18!GO:0044451;nucleoplasm part;6.03825954158241e-18!GO:0016462;pyrophosphatase activity;1.3856937273932e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.52871194549636e-17!GO:0051186;cofactor metabolic process;1.52871194549636e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;1.9967389764643e-17!GO:0016874;ligase activity;4.16584839315175e-17!GO:0044432;endoplasmic reticulum part;4.69512249599213e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.68560614451811e-17!GO:0048770;pigment granule;9.1737278135318e-17!GO:0042470;melanosome;9.1737278135318e-17!GO:0017111;nucleoside-triphosphatase activity;1.03918081715043e-16!GO:0022402;cell cycle process;1.06338061592617e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.72307869528852e-16!GO:0003954;NADH dehydrogenase activity;1.72307869528852e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.72307869528852e-16!GO:0043412;biopolymer modification;2.6806344695437e-16!GO:0032553;ribonucleotide binding;4.27198894182544e-16!GO:0032555;purine ribonucleotide binding;4.27198894182544e-16!GO:0017076;purine nucleotide binding;8.67658306133841e-16!GO:0005794;Golgi apparatus;1.03982391004326e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.46790180074021e-15!GO:0005730;nucleolus;1.53460400286601e-15!GO:0044265;cellular macromolecule catabolic process;1.6444246917795e-15!GO:0005761;mitochondrial ribosome;2.20058910859181e-15!GO:0000313;organellar ribosome;2.20058910859181e-15!GO:0000278;mitotic cell cycle;3.3488969359142e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.76517285362677e-15!GO:0006512;ubiquitin cycle;5.28321924742761e-15!GO:0008134;transcription factor binding;5.71753477549096e-15!GO:0006464;protein modification process;6.50603355312971e-15!GO:0022618;protein-RNA complex assembly;9.80569294492566e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.26034221819731e-14!GO:0042773;ATP synthesis coupled electron transport;1.26034221819731e-14!GO:0043285;biopolymer catabolic process;1.65256389931855e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.74197059227928e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.74607160561259e-14!GO:0045271;respiratory chain complex I;1.74607160561259e-14!GO:0005747;mitochondrial respiratory chain complex I;1.74607160561259e-14!GO:0009057;macromolecule catabolic process;2.21183992651807e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.99459932174853e-14!GO:0016192;vesicle-mediated transport;4.48957502625365e-14!GO:0044248;cellular catabolic process;5.28324080375387e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.4030770505457e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;6.74249435149479e-14!GO:0006605;protein targeting;6.84484417819228e-14!GO:0003676;nucleic acid binding;7.91056304989033e-14!GO:0019941;modification-dependent protein catabolic process;1.13305266878531e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.13305266878531e-13!GO:0044257;cellular protein catabolic process;1.3349838389974e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.2168471255096e-13!GO:0006732;coenzyme metabolic process;4.75172345829998e-13!GO:0043687;post-translational protein modification;1.11288776043979e-12!GO:0006974;response to DNA damage stimulus;1.14242121001907e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.27398861845887e-12!GO:0000375;RNA splicing, via transesterification reactions;1.27398861845887e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.27398861845887e-12!GO:0032559;adenyl ribonucleotide binding;1.40124818442345e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.7392706430742e-12!GO:0005524;ATP binding;1.86953879719984e-12!GO:0030163;protein catabolic process;1.93423451045641e-12!GO:0051082;unfolded protein binding;2.93994669807134e-12!GO:0005789;endoplasmic reticulum membrane;3.14098647536554e-12!GO:0009055;electron carrier activity;3.55615616827484e-12!GO:0030554;adenyl nucleotide binding;3.65492249446533e-12!GO:0012501;programmed cell death;4.76793663317578e-12!GO:0048193;Golgi vesicle transport;4.78197284960978e-12!GO:0006915;apoptosis;6.31625444201814e-12!GO:0005694;chromosome;6.58139112228049e-12!GO:0044427;chromosomal part;1.07822588370937e-11!GO:0008135;translation factor activity, nucleic acid binding;1.52210044803185e-11!GO:0051276;chromosome organization and biogenesis;4.401488793346e-11!GO:0000087;M phase of mitotic cell cycle;6.43339161484931e-11!GO:0007067;mitosis;6.5601386144488e-11!GO:0022403;cell cycle phase;9.43018850542379e-11!GO:0008219;cell death;1.38424930594072e-10!GO:0016265;death;1.38424930594072e-10!GO:0009259;ribonucleotide metabolic process;1.46821220533371e-10!GO:0016070;RNA metabolic process;1.49293028026858e-10!GO:0005635;nuclear envelope;1.49293028026858e-10!GO:0051726;regulation of cell cycle;1.53151789036411e-10!GO:0042254;ribosome biogenesis and assembly;2.10911499117718e-10!GO:0006163;purine nucleotide metabolic process;2.22976528257067e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.39180244102054e-10!GO:0000074;regulation of progression through cell cycle;2.71709394150788e-10!GO:0003712;transcription cofactor activity;4.92795262330103e-10!GO:0009150;purine ribonucleotide metabolic process;5.04278148169226e-10!GO:0005793;ER-Golgi intermediate compartment;8.1894780859892e-10!GO:0006323;DNA packaging;1.00031177459552e-09!GO:0006281;DNA repair;1.03370328683724e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.09462412141979e-09!GO:0008639;small protein conjugating enzyme activity;1.09462412141979e-09!GO:0051188;cofactor biosynthetic process;1.18498273874545e-09!GO:0006461;protein complex assembly;1.25125028844608e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.54019071793505e-09!GO:0006164;purine nucleotide biosynthetic process;1.67761562815356e-09!GO:0006399;tRNA metabolic process;1.70191502481264e-09!GO:0044453;nuclear membrane part;2.02773117196466e-09!GO:0004842;ubiquitin-protein ligase activity;2.32031074479111e-09!GO:0009260;ribonucleotide biosynthetic process;2.44415429702811e-09!GO:0030532;small nuclear ribonucleoprotein complex;2.84862277447405e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.72185100974077e-09!GO:0031965;nuclear membrane;3.91475667923344e-09!GO:0006413;translational initiation;4.20525849951425e-09!GO:0003743;translation initiation factor activity;4.99718620147762e-09!GO:0019787;small conjugating protein ligase activity;6.24180156536687e-09!GO:0009199;ribonucleoside triphosphate metabolic process;6.64949798745725e-09!GO:0006260;DNA replication;7.18876888703517e-09!GO:0009719;response to endogenous stimulus;7.77174976897479e-09!GO:0009056;catabolic process;7.8287569204182e-09!GO:0006793;phosphorus metabolic process;7.90682301572502e-09!GO:0006796;phosphate metabolic process;7.90682301572502e-09!GO:0016604;nuclear body;8.33267010653695e-09!GO:0051301;cell division;8.36266780697326e-09!GO:0009141;nucleoside triphosphate metabolic process;8.76072709915004e-09!GO:0000785;chromatin;8.94173534581378e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.38497849258835e-09!GO:0006913;nucleocytoplasmic transport;1.06679489553183e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.17795445042301e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.17795445042301e-08!GO:0042623;ATPase activity, coupled;1.18017414741415e-08!GO:0009060;aerobic respiration;1.2312667531757e-08!GO:0006446;regulation of translational initiation;1.32293715188739e-08!GO:0008565;protein transporter activity;2.28693400289134e-08!GO:0051169;nuclear transport;2.36494697135534e-08!GO:0009117;nucleotide metabolic process;2.65677266653819e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.65678386927323e-08!GO:0006333;chromatin assembly or disassembly;2.72643341945671e-08!GO:0000279;M phase;3.41609241424992e-08!GO:0007005;mitochondrion organization and biogenesis;3.64197799890769e-08!GO:0016740;transferase activity;3.75868001190372e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.2115339122893e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.2115339122893e-08!GO:0016881;acid-amino acid ligase activity;4.28006060269752e-08!GO:0016310;phosphorylation;6.43566242928419e-08!GO:0016887;ATPase activity;6.81803249522507e-08!GO:0015986;ATP synthesis coupled proton transport;7.12327617183001e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.12327617183001e-08!GO:0048523;negative regulation of cellular process;7.44668952478391e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.62460511767866e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.62460511767866e-08!GO:0050794;regulation of cellular process;7.67043936295431e-08!GO:0065004;protein-DNA complex assembly;7.68549473530404e-08!GO:0017038;protein import;1.00971666670482e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.17697126827658e-07!GO:0045333;cellular respiration;1.2049023898157e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.36951737987581e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.36951737987581e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.36951737987581e-07!GO:0046034;ATP metabolic process;1.38560663455734e-07!GO:0005768;endosome;1.39772937236944e-07!GO:0065002;intracellular protein transport across a membrane;1.39772937236944e-07!GO:0031988;membrane-bound vesicle;1.42834138499815e-07!GO:0003924;GTPase activity;1.46709413380556e-07!GO:0042981;regulation of apoptosis;1.77145776659486e-07!GO:0043067;regulation of programmed cell death;2.04847671855841e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.27300860023019e-07!GO:0005773;vacuole;2.31151627066347e-07!GO:0005643;nuclear pore;2.31247014442987e-07!GO:0009108;coenzyme biosynthetic process;2.72605056513945e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.74125297120802e-07!GO:0006364;rRNA processing;3.00267189766576e-07!GO:0015630;microtubule cytoskeleton;3.28137407366147e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.38310841452129e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.61728725995282e-07!GO:0019829;cation-transporting ATPase activity;3.85184929835338e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.90651362621186e-07!GO:0043038;amino acid activation;4.25103727344725e-07!GO:0006418;tRNA aminoacylation for protein translation;4.25103727344725e-07!GO:0043039;tRNA aminoacylation;4.25103727344725e-07!GO:0005788;endoplasmic reticulum lumen;4.44211479551059e-07!GO:0006334;nucleosome assembly;4.97847301554497e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.10149579969747e-07!GO:0044431;Golgi apparatus part;5.13506955432924e-07!GO:0006099;tricarboxylic acid cycle;5.77913594021978e-07!GO:0046356;acetyl-CoA catabolic process;5.77913594021978e-07!GO:0006916;anti-apoptosis;6.44336280431867e-07!GO:0043069;negative regulation of programmed cell death;6.46569199192465e-07!GO:0016072;rRNA metabolic process;7.07043245953197e-07!GO:0031497;chromatin assembly;7.53053823726207e-07!GO:0006754;ATP biosynthetic process;8.13327336166194e-07!GO:0006753;nucleoside phosphate metabolic process;8.13327336166194e-07!GO:0051246;regulation of protein metabolic process;8.48911605335959e-07!GO:0043066;negative regulation of apoptosis;8.87326819849805e-07!GO:0006888;ER to Golgi vesicle-mediated transport;8.97875689141821e-07!GO:0045259;proton-transporting ATP synthase complex;9.09778503048113e-07!GO:0031982;vesicle;9.20401828818831e-07!GO:0016779;nucleotidyltransferase activity;1.05592112496167e-06!GO:0016491;oxidoreductase activity;1.07956231903871e-06!GO:0006084;acetyl-CoA metabolic process;1.12866670363436e-06!GO:0031410;cytoplasmic vesicle;1.28276480279319e-06!GO:0031252;leading edge;1.69373976381702e-06!GO:0048519;negative regulation of biological process;2.1133518559943e-06!GO:0005762;mitochondrial large ribosomal subunit;2.17373118784334e-06!GO:0000315;organellar large ribosomal subunit;2.17373118784334e-06!GO:0000323;lytic vacuole;2.41480639601093e-06!GO:0005764;lysosome;2.41480639601093e-06!GO:0005525;GTP binding;2.53631393786293e-06!GO:0004298;threonine endopeptidase activity;2.55776658062884e-06!GO:0016787;hydrolase activity;2.58773470112282e-06!GO:0046930;pore complex;3.00045254479947e-06!GO:0051187;cofactor catabolic process;3.01161115677609e-06!GO:0030120;vesicle coat;3.07281856672328e-06!GO:0030662;coated vesicle membrane;3.07281856672328e-06!GO:0016607;nuclear speck;3.09589603717559e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.20080888387953e-06!GO:0006366;transcription from RNA polymerase II promoter;3.34445702165733e-06!GO:0032446;protein modification by small protein conjugation;3.49806367296508e-06!GO:0016567;protein ubiquitination;5.03333469629595e-06!GO:0008654;phospholipid biosynthetic process;5.04359216048837e-06!GO:0004386;helicase activity;5.04359216048837e-06!GO:0008026;ATP-dependent helicase activity;5.61563199173408e-06!GO:0003697;single-stranded DNA binding;6.61192697985766e-06!GO:0005770;late endosome;7.34128000261172e-06!GO:0000139;Golgi membrane;7.69647845039078e-06!GO:0048475;coated membrane;7.7830927857326e-06!GO:0030117;membrane coat;7.7830927857326e-06!GO:0009109;coenzyme catabolic process;9.37454096550363e-06!GO:0005667;transcription factor complex;9.58066445543705e-06!GO:0007264;small GTPase mediated signal transduction;9.74823379641381e-06!GO:0019899;enzyme binding;9.96705028018637e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.04730989407663e-05!GO:0000245;spliceosome assembly;1.07012356559023e-05!GO:0044440;endosomal part;1.17701125938883e-05!GO:0010008;endosome membrane;1.17701125938883e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.29064291640305e-05!GO:0016853;isomerase activity;1.57451958780158e-05!GO:0031968;organelle outer membrane;1.59881333304107e-05!GO:0007243;protein kinase cascade;1.62790798765871e-05!GO:0019867;outer membrane;1.77373344951069e-05!GO:0045786;negative regulation of progression through cell cycle;1.80433929399771e-05!GO:0045454;cell redox homeostasis;1.8298416736365e-05!GO:0016568;chromatin modification;2.01762409805305e-05!GO:0006752;group transfer coenzyme metabolic process;2.04139998162815e-05!GO:0032561;guanyl ribonucleotide binding;2.52489857183087e-05!GO:0019001;guanyl nucleotide binding;2.52489857183087e-05!GO:0051329;interphase of mitotic cell cycle;2.60394411544478e-05!GO:0016044;membrane organization and biogenesis;3.32886892125529e-05!GO:0005813;centrosome;3.4166572914203e-05!GO:0005741;mitochondrial outer membrane;3.51981550633584e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.60994131804736e-05!GO:0006091;generation of precursor metabolites and energy;3.97849420512045e-05!GO:0003713;transcription coactivator activity;4.04733295920708e-05!GO:0005769;early endosome;4.35754397020284e-05!GO:0051325;interphase;4.47076949296587e-05!GO:0006403;RNA localization;5.06301281741928e-05!GO:0003899;DNA-directed RNA polymerase activity;5.10804581035417e-05!GO:0050657;nucleic acid transport;5.19350266670376e-05!GO:0051236;establishment of RNA localization;5.19350266670376e-05!GO:0050658;RNA transport;5.19350266670376e-05!GO:0051170;nuclear import;5.59081095920056e-05!GO:0003714;transcription corepressor activity;5.62962095559789e-05!GO:0000151;ubiquitin ligase complex;6.30015218596856e-05!GO:0000314;organellar small ribosomal subunit;6.35178394986141e-05!GO:0005763;mitochondrial small ribosomal subunit;6.35178394986141e-05!GO:0043623;cellular protein complex assembly;6.53328794747587e-05!GO:0050789;regulation of biological process;6.78563302239707e-05!GO:0030029;actin filament-based process;8.13337101837531e-05!GO:0006606;protein import into nucleus;9.16093698896584e-05!GO:0030867;rough endoplasmic reticulum membrane;9.42699479889318e-05!GO:0009165;nucleotide biosynthetic process;0.00010031831524235!GO:0008047;enzyme activator activity;0.000109195102759744!GO:0007010;cytoskeleton organization and biogenesis;0.000109633740859236!GO:0005815;microtubule organizing center;0.000114232486946669!GO:0044262;cellular carbohydrate metabolic process;0.000131817135680337!GO:0016126;sterol biosynthetic process;0.000171146153668346!GO:0042802;identical protein binding;0.000171146153668346!GO:0008632;apoptotic program;0.000177626934216819!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000182818383529476!GO:0033116;ER-Golgi intermediate compartment membrane;0.000187261775521418!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000202895783318541!GO:0065009;regulation of a molecular function;0.000206679028635126!GO:0005819;spindle;0.000212956154018782!GO:0006626;protein targeting to mitochondrion;0.000219952889935725!GO:0043566;structure-specific DNA binding;0.000234660002147534!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000243048662779195!GO:0015980;energy derivation by oxidation of organic compounds;0.00024668781273608!GO:0005905;coated pit;0.000251655516760499!GO:0006613;cotranslational protein targeting to membrane;0.00025829225535382!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000259394927227722!GO:0016859;cis-trans isomerase activity;0.000262721256849184!GO:0005798;Golgi-associated vesicle;0.000295793813234952!GO:0006839;mitochondrial transport;0.000306748803618731!GO:0000786;nucleosome;0.000306748803618731!GO:0003724;RNA helicase activity;0.000321864043860929!GO:0005048;signal sequence binding;0.000331031907781079!GO:0016563;transcription activator activity;0.000349760284401897!GO:0016564;transcription repressor activity;0.000370721207125119!GO:0043681;protein import into mitochondrion;0.00038171707842719!GO:0051427;hormone receptor binding;0.000403388624733572!GO:0051028;mRNA transport;0.000578579658971801!GO:0008361;regulation of cell size;0.000586560870323527!GO:0006695;cholesterol biosynthetic process;0.000602752482793266!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000638599392612914!GO:0016049;cell growth;0.000645402226237397!GO:0008250;oligosaccharyl transferase complex;0.00067421534741186!GO:0030880;RNA polymerase complex;0.000683443390186356!GO:0051087;chaperone binding;0.000690392043373353!GO:0019843;rRNA binding;0.000744172716510724!GO:0048471;perinuclear region of cytoplasm;0.000752401223932363!GO:0046474;glycerophospholipid biosynthetic process;0.000786223437310055!GO:0048522;positive regulation of cellular process;0.000786223437310055!GO:0035257;nuclear hormone receptor binding;0.000822238464002186!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000852423007733612!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000852587928795545!GO:0051920;peroxiredoxin activity;0.0008852844299923!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000891776523077355!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000941562251488438!GO:0015399;primary active transmembrane transporter activity;0.000941562251488438!GO:0001558;regulation of cell growth;0.000949925946040691!GO:0005774;vacuolar membrane;0.000951075818527748!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00100801660413438!GO:0005885;Arp2/3 protein complex;0.00100887776513846!GO:0008033;tRNA processing;0.00100887776513846!GO:0007006;mitochondrial membrane organization and biogenesis;0.00118200223053786!GO:0005684;U2-dependent spliceosome;0.00123488452521293!GO:0030133;transport vesicle;0.00126586665703626!GO:0043021;ribonucleoprotein binding;0.00133543545684111!GO:0018196;peptidyl-asparagine modification;0.00143835754118729!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00143835754118729!GO:0005096;GTPase activator activity;0.00145775445768177!GO:0006414;translational elongation;0.00145775445768177!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.001676571629928!GO:0000428;DNA-directed RNA polymerase complex;0.001676571629928!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00170783160774721!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00170783160774721!GO:0006612;protein targeting to membrane;0.00170783160774721!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00174324157826275!GO:0007265;Ras protein signal transduction;0.00186290017638945!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0019502693686708!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0019502693686708!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0019502693686708!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00206386060526559!GO:0046467;membrane lipid biosynthetic process;0.00206904329291262!GO:0006778;porphyrin metabolic process;0.00212090851083793!GO:0033013;tetrapyrrole metabolic process;0.00212090851083793!GO:0046489;phosphoinositide biosynthetic process;0.00214429341070741!GO:0008610;lipid biosynthetic process;0.00214429341070741!GO:0004576;oligosaccharyl transferase activity;0.00228819147785259!GO:0007242;intracellular signaling cascade;0.00238234778749524!GO:0005874;microtubule;0.00242267767209197!GO:0005765;lysosomal membrane;0.00255368249262765!GO:0008186;RNA-dependent ATPase activity;0.0025862722274135!GO:0044437;vacuolar part;0.00285228308110938!GO:0006818;hydrogen transport;0.00291593656716954!GO:0006740;NADPH regeneration;0.00291946102928942!GO:0006098;pentose-phosphate shunt;0.00291946102928942!GO:0006897;endocytosis;0.00293257634921617!GO:0010324;membrane invagination;0.00293257634921617!GO:0015992;proton transport;0.00295770427540791!GO:0030027;lamellipodium;0.00296256661306447!GO:0003684;damaged DNA binding;0.00301537063211443!GO:0030176;integral to endoplasmic reticulum membrane;0.003180945130406!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0032095369439922!GO:0015002;heme-copper terminal oxidase activity;0.0032095369439922!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0032095369439922!GO:0004129;cytochrome-c oxidase activity;0.0032095369439922!GO:0007051;spindle organization and biogenesis;0.00337828396858346!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00346788378757785!GO:0000075;cell cycle checkpoint;0.00346788378757785!GO:0001726;ruffle;0.00350695882545063!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00355765579562041!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00363291944893331!GO:0051789;response to protein stimulus;0.00363876818358339!GO:0006986;response to unfolded protein;0.00363876818358339!GO:0008139;nuclear localization sequence binding;0.00367165223061989!GO:0048487;beta-tubulin binding;0.00367165223061989!GO:0008094;DNA-dependent ATPase activity;0.00368606082664318!GO:0031902;late endosome membrane;0.00371786543318393!GO:0030658;transport vesicle membrane;0.00373927753892209!GO:0030041;actin filament polymerization;0.00389653784128331!GO:0017166;vinculin binding;0.00394552367528458!GO:0031324;negative regulation of cellular metabolic process;0.0043556714187108!GO:0005791;rough endoplasmic reticulum;0.00439258980699252!GO:0007040;lysosome organization and biogenesis;0.00451210458055052!GO:0006261;DNA-dependent DNA replication;0.00462940873293102!GO:0031072;heat shock protein binding;0.004634286373998!GO:0006509;membrane protein ectodomain proteolysis;0.00466661101036293!GO:0033619;membrane protein proteolysis;0.00466661101036293!GO:0042168;heme metabolic process;0.00477645581091139!GO:0009967;positive regulation of signal transduction;0.00505273529191529!GO:0000775;chromosome, pericentric region;0.00519901955477259!GO:0044452;nucleolar part;0.0052110232001805!GO:0030132;clathrin coat of coated pit;0.00526011028991328!GO:0005657;replication fork;0.00526011028991328!GO:0006650;glycerophospholipid metabolic process;0.00534270896446357!GO:0043488;regulation of mRNA stability;0.00539416289006294!GO:0043487;regulation of RNA stability;0.00539416289006294!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00540612033683581!GO:0016301;kinase activity;0.00546442505978348!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00562691507550069!GO:0008092;cytoskeletal protein binding;0.00569620785742436!GO:0003729;mRNA binding;0.00586812100345139!GO:0030118;clathrin coat;0.00623105504685761!GO:0004004;ATP-dependent RNA helicase activity;0.00625591386858153!GO:0043284;biopolymer biosynthetic process;0.00627845602868533!GO:0016272;prefoldin complex;0.00646845957373118!GO:0032508;DNA duplex unwinding;0.00677109296437009!GO:0032392;DNA geometric change;0.00677109296437009!GO:0006779;porphyrin biosynthetic process;0.00677109296437009!GO:0033014;tetrapyrrole biosynthetic process;0.00677109296437009!GO:0000059;protein import into nucleus, docking;0.00685070581917858!GO:0030659;cytoplasmic vesicle membrane;0.00697006855540999!GO:0065007;biological regulation;0.00717154738008531!GO:0006497;protein amino acid lipidation;0.00751958233077211!GO:0050790;regulation of catalytic activity;0.0076998005490803!GO:0006383;transcription from RNA polymerase III promoter;0.00771810637172453!GO:0051540;metal cluster binding;0.00780126844617827!GO:0051536;iron-sulfur cluster binding;0.00780126844617827!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00781828811700837!GO:0006402;mRNA catabolic process;0.00781828811700837!GO:0043492;ATPase activity, coupled to movement of substances;0.00799978683787752!GO:0006950;response to stress;0.00800158758231669!GO:0004674;protein serine/threonine kinase activity;0.00828857612552339!GO:0046483;heterocycle metabolic process;0.0083274364145446!GO:0005637;nuclear inner membrane;0.00837352859852503!GO:0051168;nuclear export;0.00842170981867475!GO:0030134;ER to Golgi transport vesicle;0.00844896035765733!GO:0008154;actin polymerization and/or depolymerization;0.00850690750570106!GO:0006401;RNA catabolic process;0.00851671094883298!GO:0009892;negative regulation of metabolic process;0.00860441648541829!GO:0006891;intra-Golgi vesicle-mediated transport;0.00866614171468526!GO:0015036;disulfide oxidoreductase activity;0.00870517224010494!GO:0006289;nucleotide-excision repair;0.0087092302682287!GO:0051252;regulation of RNA metabolic process;0.00895436380518028!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00939617186906112!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00957262837098346!GO:0016197;endosome transport;0.00957819324700203!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00961039267603123!GO:0007050;cell cycle arrest;0.00962700024143645!GO:0003678;DNA helicase activity;0.0097788660087485!GO:0016363;nuclear matrix;0.00980986593369826!GO:0022890;inorganic cation transmembrane transporter activity;0.00981516001390574!GO:0030660;Golgi-associated vesicle membrane;0.00991111283513483!GO:0050662;coenzyme binding;0.00994359836750301!GO:0019887;protein kinase regulator activity;0.00995110939567435!GO:0005083;small GTPase regulator activity;0.0101472806980542!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0101676407303232!GO:0006595;polyamine metabolic process;0.0102179505997986!GO:0007033;vacuole organization and biogenesis;0.0102739334703882!GO:0044433;cytoplasmic vesicle part;0.0104159735125667!GO:0000082;G1/S transition of mitotic cell cycle;0.0105894520177002!GO:0035258;steroid hormone receptor binding;0.0108813218782799!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0111770370982372!GO:0006643;membrane lipid metabolic process;0.0113626699506639!GO:0006268;DNA unwinding during replication;0.0113626699506639!GO:0006979;response to oxidative stress;0.0114817850760494!GO:0051287;NAD binding;0.0117948894903553!GO:0030384;phosphoinositide metabolic process;0.0123979327848459!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0124168593580618!GO:0006739;NADP metabolic process;0.0124801039710541!GO:0015631;tubulin binding;0.0127617435073085!GO:0033673;negative regulation of kinase activity;0.0129948406502913!GO:0006469;negative regulation of protein kinase activity;0.0129948406502913!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.013110562562081!GO:0051348;negative regulation of transferase activity;0.013110562562081!GO:0007088;regulation of mitosis;0.0133907007120964!GO:0040008;regulation of growth;0.0138040134243913!GO:0008637;apoptotic mitochondrial changes;0.014380772577653!GO:0006783;heme biosynthetic process;0.0148248895773209!GO:0030127;COPII vesicle coat;0.0149030040612151!GO:0012507;ER to Golgi transport vesicle membrane;0.0149030040612151!GO:0030119;AP-type membrane coat adaptor complex;0.0149163785247063!GO:0048500;signal recognition particle;0.0152906115559844!GO:0051101;regulation of DNA binding;0.0154014955278517!GO:0005758;mitochondrial intermembrane space;0.0156712422977011!GO:0043281;regulation of caspase activity;0.0156735835294852!GO:0008243;plasminogen activator activity;0.0160431400951198!GO:0006506;GPI anchor biosynthetic process;0.0163226302836183!GO:0000096;sulfur amino acid metabolic process;0.0163226302836183!GO:0004518;nuclease activity;0.016419517014382!GO:0031970;organelle envelope lumen;0.0167113967675477!GO:0030663;COPI coated vesicle membrane;0.0167115145850728!GO:0030126;COPI vesicle coat;0.0167115145850728!GO:0030308;negative regulation of cell growth;0.0170374084136201!GO:0005869;dynactin complex;0.0171315420499632!GO:0019206;nucleoside kinase activity;0.0171650275673188!GO:0045792;negative regulation of cell size;0.0171810317453568!GO:0031272;regulation of pseudopodium formation;0.0174527576562155!GO:0031269;pseudopodium formation;0.0174527576562155!GO:0031344;regulation of cell projection organization and biogenesis;0.0174527576562155!GO:0031268;pseudopodium organization and biogenesis;0.0174527576562155!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0174527576562155!GO:0031274;positive regulation of pseudopodium formation;0.0174527576562155!GO:0004860;protein kinase inhibitor activity;0.0175328245083993!GO:0046519;sphingoid metabolic process;0.0177045760074195!GO:0006458;'de novo' protein folding;0.0177714537729307!GO:0051084;'de novo' posttranslational protein folding;0.0177714537729307!GO:0000209;protein polyubiquitination;0.0177741771264429!GO:0005099;Ras GTPase activator activity;0.0179024790550211!GO:0001953;negative regulation of cell-matrix adhesion;0.0180963189790544!GO:0022408;negative regulation of cell-cell adhesion;0.0181268411863576!GO:0042158;lipoprotein biosynthetic process;0.0181300664401271!GO:0009966;regulation of signal transduction;0.0182250509937906!GO:0003711;transcription elongation regulator activity;0.0183621829275784!GO:0006790;sulfur metabolic process;0.0183684631391343!GO:0007266;Rho protein signal transduction;0.0183684631391343!GO:0003756;protein disulfide isomerase activity;0.0185748671437094!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0185748671437094!GO:0004177;aminopeptidase activity;0.018775809519237!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.018775809519237!GO:0019207;kinase regulator activity;0.0188555586929724!GO:0033559;unsaturated fatty acid metabolic process;0.0197810354310078!GO:0006636;unsaturated fatty acid biosynthetic process;0.0197810354310078!GO:0035035;histone acetyltransferase binding;0.0198275854227468!GO:0006644;phospholipid metabolic process;0.0205653866532599!GO:0006733;oxidoreduction coenzyme metabolic process;0.0207903886344922!GO:0012506;vesicle membrane;0.0210330343429048!GO:0007162;negative regulation of cell adhesion;0.021041235315768!GO:0000287;magnesium ion binding;0.0211755785235485!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0211814866718671!GO:0030833;regulation of actin filament polymerization;0.0213451278508648!GO:0009116;nucleoside metabolic process;0.0215729920801921!GO:0048660;regulation of smooth muscle cell proliferation;0.0217107847026388!GO:0030031;cell projection biogenesis;0.021711834132529!GO:0016125;sterol metabolic process;0.0218646421830394!GO:0045045;secretory pathway;0.0222742514942752!GO:0030131;clathrin adaptor complex;0.0223732183633027!GO:0006220;pyrimidine nucleotide metabolic process;0.0225134775412167!GO:0030137;COPI-coated vesicle;0.0225325228578544!GO:0006505;GPI anchor metabolic process;0.0230162677326463!GO:0030913;paranodal junction assembly;0.0230430811963897!GO:0032288;myelin formation;0.0230430811963897!GO:0030695;GTPase regulator activity;0.0230707499165847!GO:0005862;muscle thin filament tropomyosin;0.0232305467247413!GO:0031901;early endosome membrane;0.0234248041126837!GO:0008538;proteasome activator activity;0.0234248041126837!GO:0030145;manganese ion binding;0.0234465370498056!GO:0030125;clathrin vesicle coat;0.0237761463327485!GO:0030665;clathrin coated vesicle membrane;0.0237761463327485!GO:0000049;tRNA binding;0.0248174205293307!GO:0048468;cell development;0.0252324556158455!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0252929962791177!GO:0010257;NADH dehydrogenase complex assembly;0.0252929962791177!GO:0033108;mitochondrial respiratory chain complex assembly;0.0252929962791177!GO:0006118;electron transport;0.0261202995560757!GO:0005100;Rho GTPase activator activity;0.0261464568558465!GO:0043433;negative regulation of transcription factor activity;0.0272296993985556!GO:0031625;ubiquitin protein ligase binding;0.0277333229730814!GO:0043189;H4/H2A histone acetyltransferase complex;0.0278238976651413!GO:0000123;histone acetyltransferase complex;0.0280779580783488!GO:0051539;4 iron, 4 sulfur cluster binding;0.0282375217828854!GO:0006672;ceramide metabolic process;0.0283786668528741!GO:0008320;protein transmembrane transporter activity;0.0286435187820813!GO:0008312;7S RNA binding;0.028731487280754!GO:0004003;ATP-dependent DNA helicase activity;0.0292353834361379!GO:0005832;chaperonin-containing T-complex;0.029648138678086!GO:0045941;positive regulation of transcription;0.0297210383832771!GO:0007021;tubulin folding;0.0299408716069929!GO:0005092;GDP-dissociation inhibitor activity;0.0309962948246288!GO:0048518;positive regulation of biological process;0.0311721574466944!GO:0006007;glucose catabolic process;0.0314965882027517!GO:0031529;ruffle organization and biogenesis;0.0315832252053914!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0315976315548309!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0316297824809249!GO:0045047;protein targeting to ER;0.0316297824809249!GO:0019222;regulation of metabolic process;0.0316297824809249!GO:0030508;thiol-disulfide exchange intermediate activity;0.0319478191450959!GO:0007346;regulation of progression through mitotic cell cycle;0.0319502527893286!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0321029742267035!GO:0030521;androgen receptor signaling pathway;0.0321472209615388!GO:0006082;organic acid metabolic process;0.0332169704897063!GO:0030433;ER-associated protein catabolic process;0.0335514617493251!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0335514617493251!GO:0050178;phenylpyruvate tautomerase activity;0.0336209062575533!GO:0009124;nucleoside monophosphate biosynthetic process;0.034281985968734!GO:0009123;nucleoside monophosphate metabolic process;0.034281985968734!GO:0051128;regulation of cellular component organization and biogenesis;0.0348052693467926!GO:0022415;viral reproductive process;0.034910147129892!GO:0008022;protein C-terminus binding;0.0350227334861335!GO:0006352;transcription initiation;0.0353692258265514!GO:0040011;locomotion;0.0356290266313232!GO:0035267;NuA4 histone acetyltransferase complex;0.0356290266313232!GO:0043086;negative regulation of catalytic activity;0.0356290266313232!GO:0045926;negative regulation of growth;0.0358846347852276!GO:0007044;cell-substrate junction assembly;0.0359493967729482!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0359493967729482!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0364331601303409!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0365893531280988!GO:0051098;regulation of binding;0.0368802931029634!GO:0019752;carboxylic acid metabolic process;0.0373493596393471!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0373943123826699!GO:0005652;nuclear lamina;0.0377832561135009!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0378172260708865!GO:0006302;double-strand break repair;0.0378326386061568!GO:0030032;lamellipodium biogenesis;0.0380878017265298!GO:0004448;isocitrate dehydrogenase activity;0.0381151343479663!GO:0019904;protein domain specific binding;0.0382428522286401!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0385734590324647!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.039582302442228!GO:0008629;induction of apoptosis by intracellular signals;0.039582302442228!GO:0006807;nitrogen compound metabolic process;0.0397593644743878!GO:0001568;blood vessel development;0.0397593644743878!GO:0006919;caspase activation;0.0398604500520597!GO:0007093;mitotic cell cycle checkpoint;0.0403745824436307!GO:0005975;carbohydrate metabolic process;0.0408515362920524!GO:0007034;vacuolar transport;0.0408515362920524!GO:0030911;TPR domain binding;0.0409917530184862!GO:0019210;kinase inhibitor activity;0.0414288905055904!GO:0006310;DNA recombination;0.0414288905055904!GO:0051336;regulation of hydrolase activity;0.0414288905055904!GO:0043065;positive regulation of apoptosis;0.0414758918345377!GO:0030496;midbody;0.0416273934147166!GO:0006611;protein export from nucleus;0.0417701255200593!GO:0016407;acetyltransferase activity;0.0419887333624391!GO:0007017;microtubule-based process;0.0419887333624391!GO:0051085;chaperone cofactor-dependent protein folding;0.0421635673216098!GO:0000118;histone deacetylase complex;0.0422404908362638!GO:0051059;NF-kappaB binding;0.0422404908362638!GO:0016481;negative regulation of transcription;0.0424033610833476!GO:0000339;RNA cap binding;0.042445139005182!GO:0031301;integral to organelle membrane;0.0426000698822493!GO:0003746;translation elongation factor activity;0.0429322572298468!GO:0001836;release of cytochrome c from mitochondria;0.0434569904600532!GO:0016860;intramolecular oxidoreductase activity;0.0439432764704742!GO:0051270;regulation of cell motility;0.0442017103011717!GO:0016408;C-acyltransferase activity;0.0443109649971908!GO:0043022;ribosome binding;0.0444717284110542!GO:0006520;amino acid metabolic process;0.0449088296391955!GO:0003682;chromatin binding;0.0454349322689842!GO:0009303;rRNA transcription;0.046348630851806!GO:0043068;positive regulation of programmed cell death;0.0464544555140824!GO:0016311;dephosphorylation;0.0466603030317502!GO:0051775;response to redox state;0.0469900752930279!GO:0006980;redox signal response;0.0469900752930279!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0477973066865354!GO:0001944;vasculature development;0.0483048679677101!GO:0009112;nucleobase metabolic process;0.0490611955113483!GO:0016741;transferase activity, transferring one-carbon groups;0.049215391508988 | |||
|sample_id=11594 | |sample_id=11594 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=RXR{A,B,G}:1.57600352229;SOX{8,9,10}:1.57211076323;FOX{I1,J2}:1.34806270059;TLX1..3_NFIC{dimer}:1.1999240905;NR5A1,2:1.10724659055;ESRRA:1.01952809194;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.924176339997;XCPE1{core}:0.879081520807;PBX1:0.850265443343;HES1:0.822329785222;TP53:0.81965961958;AR:0.815411399944;GZF1:0.813084678989;bHLH_family:0.792662324373;TFAP2{A,C}:0.781003565507;NFATC1..3:0.729677065604;IKZF2:0.694342242277;ZNF148:0.644920580131;ZNF423:0.632737329131;PAX6:0.63113124046;ETS1,2:0.622408174269;ZBTB6:0.615387845416;IKZF1:0.59494966802;ONECUT1,2:0.594106530229;ARID5B:0.587443219429;GATA6:0.554456113461;EBF1:0.534536371791;TFAP4:0.530027179514;ZIC1..3:0.516453904274;LEF1_TCF7_TCF7L1,2:0.431945780217;PAX1,9:0.412751625503;GFI1:0.381397600587;SPZ1:0.374456839316;SPIB:0.369946370739;ELF1,2,4:0.335839296194;HIC1:0.321331230977;GTF2A1,2:0.306082388809;HNF4A_NR2F1,2:0.299933673908;NR3C1:0.295157113094;STAT2,4,6:0.294776226553;UFEwm:0.276877925548;TFCP2:0.269511077546;FOXL1:0.265509068224;SMAD1..7,9:0.261281480998;FOXQ1:0.240697781771;SOX2:0.229130196357;TFDP1:0.225351086286;NFE2:0.224367582991;BACH2:0.20956789795;PAX5:0.206375696052;SP1:0.190297731694;HOX{A5,B5}:0.1683220296;MYB:0.159756065776;NFY{A,B,C}:0.158151128123;NKX2-3_NKX2-5:0.154588075805;GFI1B:0.142544709807;REST:0.141967886908;TEAD1:0.140678803105;MYOD1:0.139939430435;TFAP2B:0.139105079824;ALX1:0.13391497049;TAL1_TCF{3,4,12}:0.107589386772;POU6F1:0.102318512931;POU1F1:0.097754671899;ZFP161:0.0974918172206;CRX:0.0807354421814;FOSL2:0.0577245303374;PPARG:0.0541447042705;GLI1..3:0.0529404192664;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0481499410147;PITX1..3:0.0446883358;MTE{core}:0.0420437209802;SOX5:0.0380142152484;RXRA_VDR{dimer}:0.0359881934358;HAND1,2:0.0355259593882;SOX17:0.0332183218369;FOXD3:0.0285238692883;FOXM1:0.0242815602937;NFE2L1:0.0205839225658;FOS_FOS{B,L1}_JUN{B,D}:0.016139528686;SPI1:0.0132012182595;LMO2:-0.00120530927897;POU3F1..4:-0.0116409606495;ZNF238:-0.0154768797809;PAX8:-0.0336167817667;NFE2L2:-0.0386265834985;RBPJ:-0.0621718622801;E2F1..5:-0.0699375700785;YY1:-0.0740102580611;NKX2-2,8:-0.10663298335;ESR1:-0.121429226595;ZNF143:-0.160272903152;SRF:-0.162458028907;NRF1:-0.169187576705;MTF1:-0.169343874324;LHX3,4:-0.172892669471;TBP:-0.173388855641;NFKB1_REL_RELA:-0.174891228901;NANOG:-0.181719040331;POU2F1..3:-0.184275748155;HBP1_HMGB_SSRP1_UBTF:-0.204073979929;GATA4:-0.209117841441;NANOG{mouse}:-0.209949234722;ADNP_IRX_SIX_ZHX:-0.255627473543;HNF1A:-0.263077363344;HOX{A6,A7,B6,B7}:-0.270087380905;MED-1{core}:-0.284110994256;HOXA9_MEIS1:-0.286306823705;MEF2{A,B,C,D}:-0.306582891878;PAX2:-0.309033190841;NR6A1:-0.31806898182;RFX1:-0.318941287375;CUX2:-0.334059919108;EP300:-0.342644721119;KLF4:-0.345906704382;DMAP1_NCOR{1,2}_SMARC:-0.347798443824;SNAI1..3:-0.354765997941;GTF2I:-0.356541635116;NHLH1,2:-0.359583207422;IRF1,2:-0.377359386337;EN1,2:-0.403614819532;NKX3-2:-0.405926027778;PATZ1:-0.415430454242;GCM1,2:-0.437778826057;RORA:-0.440028108598;RREB1:-0.453864412755;VSX1,2:-0.460398800524;MZF1:-0.469783903428;ATF6:-0.47826436448;XBP1:-0.479566695747;CDC5L:-0.497132329788;CREB1:-0.504421727786;POU5F1:-0.508170962328;ALX4:-0.517457283847;HMX1:-0.532825702603;ATF2:-0.535213879084;MAZ:-0.540973446211;TBX4,5:-0.54240286306;FOX{D1,D2}:-0.545707981404;FOXP3:-0.552534883022;PAX3,7:-0.568587265608;SREBF1,2:-0.582843130396;EGR1..3:-0.585592415172;EVI1:-0.591514152493;HLF:-0.59192055851;FOXP1:-0.598451574871;T:-0.601839873681;STAT5{A,B}:-0.607131385182;FOX{F1,F2,J1}:-0.609332613791;PRRX1,2:-0.615477617409;PRDM1:-0.6402763675;FOXA2:-0.650958075079;MAFB:-0.661376964682;CEBPA,B_DDIT3:-0.666203612124;TEF:-0.66677032218;RUNX1..3:-0.678957939995;OCT4_SOX2{dimer}:-0.698507126059;JUN:-0.712438192977;TOPORS:-0.727119191309;AIRE:-0.740634552995;NR1H4:-0.742125150067;BREu{core}:-0.743464800925;STAT1,3:-0.754942755922;PAX4:-0.782607045816;ZEB1:-0.821674065898;BPTF:-0.823777314652;NFIX:-0.845952550982;DBP:-0.857003514708;MYFfamily:-0.858551312261;IRF7:-0.860559122657;TGIF1:-0.882878957599;NKX2-1,4:-0.889998793847;ELK1,4_GABP{A,B1}:-0.890117565456;PDX1:-0.901384617687;HIF1A:-0.93103711131;MYBL2:-0.94150022366;AHR_ARNT_ARNT2:-0.949198149985;HOX{A4,D4}:-0.966599382514;HSF1,2:-1.00074760399;TLX2:-1.0057655062;NKX3-1:-1.01515640604;FOXO1,3,4:-1.05044042253;ZNF384:-1.05462669012;HMGA1,2:-1.07748084921;ATF5_CREB3:-1.08056681357;ZBTB16:-1.10967361699;NFIL3:-1.17368568773;RFX2..5_RFXANK_RFXAP:-1.18863492257;CDX1,2,4:-1.23547450452;FOXN1:-1.24824640502;ATF4:-1.26839056193;NKX6-1,2:-1.44823188906 | |top_motifs=RXR{A,B,G}:1.57600352229;SOX{8,9,10}:1.57211076323;FOX{I1,J2}:1.34806270059;TLX1..3_NFIC{dimer}:1.1999240905;NR5A1,2:1.10724659055;ESRRA:1.01952809194;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.924176339997;XCPE1{core}:0.879081520807;PBX1:0.850265443343;HES1:0.822329785222;TP53:0.81965961958;AR:0.815411399944;GZF1:0.813084678989;bHLH_family:0.792662324373;TFAP2{A,C}:0.781003565507;NFATC1..3:0.729677065604;IKZF2:0.694342242277;ZNF148:0.644920580131;ZNF423:0.632737329131;PAX6:0.63113124046;ETS1,2:0.622408174269;ZBTB6:0.615387845416;IKZF1:0.59494966802;ONECUT1,2:0.594106530229;ARID5B:0.587443219429;GATA6:0.554456113461;EBF1:0.534536371791;TFAP4:0.530027179514;ZIC1..3:0.516453904274;LEF1_TCF7_TCF7L1,2:0.431945780217;PAX1,9:0.412751625503;GFI1:0.381397600587;SPZ1:0.374456839316;SPIB:0.369946370739;ELF1,2,4:0.335839296194;HIC1:0.321331230977;GTF2A1,2:0.306082388809;HNF4A_NR2F1,2:0.299933673908;NR3C1:0.295157113094;STAT2,4,6:0.294776226553;UFEwm:0.276877925548;TFCP2:0.269511077546;FOXL1:0.265509068224;SMAD1..7,9:0.261281480998;FOXQ1:0.240697781771;SOX2:0.229130196357;TFDP1:0.225351086286;NFE2:0.224367582991;BACH2:0.20956789795;PAX5:0.206375696052;SP1:0.190297731694;HOX{A5,B5}:0.1683220296;MYB:0.159756065776;NFY{A,B,C}:0.158151128123;NKX2-3_NKX2-5:0.154588075805;GFI1B:0.142544709807;REST:0.141967886908;TEAD1:0.140678803105;MYOD1:0.139939430435;TFAP2B:0.139105079824;ALX1:0.13391497049;TAL1_TCF{3,4,12}:0.107589386772;POU6F1:0.102318512931;POU1F1:0.097754671899;ZFP161:0.0974918172206;CRX:0.0807354421814;FOSL2:0.0577245303374;PPARG:0.0541447042705;GLI1..3:0.0529404192664;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0481499410147;PITX1..3:0.0446883358;MTE{core}:0.0420437209802;SOX5:0.0380142152484;RXRA_VDR{dimer}:0.0359881934358;HAND1,2:0.0355259593882;SOX17:0.0332183218369;FOXD3:0.0285238692883;FOXM1:0.0242815602937;NFE2L1:0.0205839225658;FOS_FOS{B,L1}_JUN{B,D}:0.016139528686;SPI1:0.0132012182595;LMO2:-0.00120530927897;POU3F1..4:-0.0116409606495;ZNF238:-0.0154768797809;PAX8:-0.0336167817667;NFE2L2:-0.0386265834985;RBPJ:-0.0621718622801;E2F1..5:-0.0699375700785;YY1:-0.0740102580611;NKX2-2,8:-0.10663298335;ESR1:-0.121429226595;ZNF143:-0.160272903152;SRF:-0.162458028907;NRF1:-0.169187576705;MTF1:-0.169343874324;LHX3,4:-0.172892669471;TBP:-0.173388855641;NFKB1_REL_RELA:-0.174891228901;NANOG:-0.181719040331;POU2F1..3:-0.184275748155;HBP1_HMGB_SSRP1_UBTF:-0.204073979929;GATA4:-0.209117841441;NANOG{mouse}:-0.209949234722;ADNP_IRX_SIX_ZHX:-0.255627473543;HNF1A:-0.263077363344;HOX{A6,A7,B6,B7}:-0.270087380905;MED-1{core}:-0.284110994256;HOXA9_MEIS1:-0.286306823705;MEF2{A,B,C,D}:-0.306582891878;PAX2:-0.309033190841;NR6A1:-0.31806898182;RFX1:-0.318941287375;CUX2:-0.334059919108;EP300:-0.342644721119;KLF4:-0.345906704382;DMAP1_NCOR{1,2}_SMARC:-0.347798443824;SNAI1..3:-0.354765997941;GTF2I:-0.356541635116;NHLH1,2:-0.359583207422;IRF1,2:-0.377359386337;EN1,2:-0.403614819532;NKX3-2:-0.405926027778;PATZ1:-0.415430454242;GCM1,2:-0.437778826057;RORA:-0.440028108598;RREB1:-0.453864412755;VSX1,2:-0.460398800524;MZF1:-0.469783903428;ATF6:-0.47826436448;XBP1:-0.479566695747;CDC5L:-0.497132329788;CREB1:-0.504421727786;POU5F1:-0.508170962328;ALX4:-0.517457283847;HMX1:-0.532825702603;ATF2:-0.535213879084;MAZ:-0.540973446211;TBX4,5:-0.54240286306;FOX{D1,D2}:-0.545707981404;FOXP3:-0.552534883022;PAX3,7:-0.568587265608;SREBF1,2:-0.582843130396;EGR1..3:-0.585592415172;EVI1:-0.591514152493;HLF:-0.59192055851;FOXP1:-0.598451574871;T:-0.601839873681;STAT5{A,B}:-0.607131385182;FOX{F1,F2,J1}:-0.609332613791;PRRX1,2:-0.615477617409;PRDM1:-0.6402763675;FOXA2:-0.650958075079;MAFB:-0.661376964682;CEBPA,B_DDIT3:-0.666203612124;TEF:-0.66677032218;RUNX1..3:-0.678957939995;OCT4_SOX2{dimer}:-0.698507126059;JUN:-0.712438192977;TOPORS:-0.727119191309;AIRE:-0.740634552995;NR1H4:-0.742125150067;BREu{core}:-0.743464800925;STAT1,3:-0.754942755922;PAX4:-0.782607045816;ZEB1:-0.821674065898;BPTF:-0.823777314652;NFIX:-0.845952550982;DBP:-0.857003514708;MYFfamily:-0.858551312261;IRF7:-0.860559122657;TGIF1:-0.882878957599;NKX2-1,4:-0.889998793847;ELK1,4_GABP{A,B1}:-0.890117565456;PDX1:-0.901384617687;HIF1A:-0.93103711131;MYBL2:-0.94150022366;AHR_ARNT_ARNT2:-0.949198149985;HOX{A4,D4}:-0.966599382514;HSF1,2:-1.00074760399;TLX2:-1.0057655062;NKX3-1:-1.01515640604;FOXO1,3,4:-1.05044042253;ZNF384:-1.05462669012;HMGA1,2:-1.07748084921;ATF5_CREB3:-1.08056681357;ZBTB16:-1.10967361699;NFIL3:-1.17368568773;RFX2..5_RFXANK_RFXAP:-1.18863492257;CDX1,2,4:-1.23547450452;FOXN1:-1.24824640502;ATF4:-1.26839056193;NKX6-1,2:-1.44823188906 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11594-120H1;search_select_hide=table117:FF:11594-120H1 | |||
}} | }} | ||
Latest revision as of 18:10, 4 June 2020
| Name: | Renal Glomerular Endothelial Cells, donor2 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12086 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12086
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12086
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.413 |
| 10 | 10 | 0.849 |
| 100 | 100 | 0.497 |
| 101 | 101 | 0.174 |
| 102 | 102 | 0.577 |
| 103 | 103 | 0.628 |
| 104 | 104 | 0.994 |
| 105 | 105 | 0.811 |
| 106 | 106 | 0.226 |
| 107 | 107 | 0.0438 |
| 108 | 108 | 0.295 |
| 109 | 109 | 0.092 |
| 11 | 11 | 0.0254 |
| 110 | 110 | 0.0192 |
| 111 | 111 | 0.275 |
| 112 | 112 | 0.259 |
| 113 | 113 | 0.829 |
| 114 | 114 | 0.333 |
| 115 | 115 | 0.564 |
| 116 | 116 | 0.447 |
| 117 | 117 | 0.52 |
| 118 | 118 | 0.275 |
| 119 | 119 | 0.31 |
| 12 | 12 | 0.319 |
| 120 | 120 | 0.0215 |
| 121 | 121 | 0.761 |
| 122 | 122 | 0.994 |
| 123 | 123 | 0.0704 |
| 124 | 124 | 0.185 |
| 125 | 125 | 0.833 |
| 126 | 126 | 0.675 |
| 127 | 127 | 0.984 |
| 128 | 128 | 0.45 |
| 129 | 129 | 0.0691 |
| 13 | 13 | 0.247 |
| 130 | 130 | 0.991 |
| 131 | 131 | 0.0956 |
| 132 | 132 | 0.108 |
| 133 | 133 | 0.498 |
| 134 | 134 | 0.867 |
| 135 | 135 | 0.0567 |
| 136 | 136 | 0.101 |
| 137 | 137 | 0.447 |
| 138 | 138 | 0.992 |
| 139 | 139 | 0.793 |
| 14 | 14 | 0.981 |
| 140 | 140 | 0.3 |
| 141 | 141 | 0.518 |
| 142 | 142 | 0.908 |
| 143 | 143 | 0.0872 |
| 144 | 144 | 0.407 |
| 145 | 145 | 0.291 |
| 146 | 146 | 0.35 |
| 147 | 147 | 0.163 |
| 148 | 148 | 0.328 |
| 149 | 149 | 0.036 |
| 15 | 15 | 0.676 |
| 150 | 150 | 0.233 |
| 151 | 151 | 0.661 |
| 152 | 152 | 0.0631 |
| 153 | 153 | 0.066 |
| 154 | 154 | 0.321 |
| 155 | 155 | 0.836 |
| 156 | 156 | 0.194 |
| 157 | 157 | 0.508 |
| 158 | 158 | 0.453 |
| 159 | 159 | 0.327 |
| 16 | 16 | 0.65 |
| 160 | 160 | 0.00593 |
| 161 | 161 | 0.701 |
| 162 | 162 | 0.248 |
| 163 | 163 | 0.701 |
| 164 | 164 | 0.419 |
| 165 | 165 | 0.369 |
| 166 | 166 | 0.0765 |
| 167 | 167 | 0.202 |
| 168 | 168 | 0.343 |
| 169 | 169 | 0.0334 |
| 17 | 17 | 0.112 |
| 18 | 18 | 0.853 |
| 19 | 19 | 0.161 |
| 2 | 2 | 0.351 |
| 20 | 20 | 0.611 |
| 21 | 21 | 0.663 |
| 22 | 22 | 0.097 |
| 23 | 23 | 0.23 |
| 24 | 24 | 0.708 |
| 25 | 25 | 0.72 |
| 26 | 26 | 0.168 |
| 27 | 27 | 0.114 |
| 28 | 28 | 0.254 |
| 29 | 29 | 0.502 |
| 3 | 3 | 0.567 |
| 30 | 30 | 0.826 |
| 31 | 31 | 0.911 |
| 32 | 32 | 0.866 |
| 33 | 33 | 0.348 |
| 34 | 34 | 0.0424 |
| 35 | 35 | 0.873 |
| 36 | 36 | 0.0768 |
| 37 | 37 | 0.166 |
| 38 | 38 | 0.237 |
| 39 | 39 | 0.284 |
| 4 | 4 | 0.927 |
| 40 | 40 | 0.00422 |
| 41 | 41 | 0.0456 |
| 42 | 42 | 0.668 |
| 43 | 43 | 0.417 |
| 44 | 44 | 0.281 |
| 45 | 45 | 0.274 |
| 46 | 46 | 0.162 |
| 47 | 47 | 0.228 |
| 48 | 48 | 0.0374 |
| 49 | 49 | 0.796 |
| 5 | 5 | 0.967 |
| 50 | 50 | 0.452 |
| 51 | 51 | 0.37 |
| 52 | 52 | 0.696 |
| 53 | 53 | 0.779 |
| 54 | 54 | 0.536 |
| 55 | 55 | 0.759 |
| 56 | 56 | 0.478 |
| 57 | 57 | 0.31 |
| 58 | 58 | 0.412 |
| 59 | 59 | 0.0236 |
| 6 | 6 | 0.458 |
| 60 | 60 | 0.785 |
| 61 | 61 | 0.562 |
| 62 | 62 | 0.859 |
| 63 | 63 | 0.261 |
| 64 | 64 | 0.161 |
| 65 | 65 | 0.103 |
| 66 | 66 | 0.526 |
| 67 | 67 | 0.373 |
| 68 | 68 | 0.0802 |
| 69 | 69 | 0.343 |
| 7 | 7 | 0.724 |
| 70 | 70 | 0.681 |
| 71 | 71 | 0.336 |
| 72 | 72 | 0.454 |
| 73 | 73 | 0.00962 |
| 74 | 74 | 0.478 |
| 75 | 75 | 0.157 |
| 76 | 76 | 0.434 |
| 77 | 77 | 0.0311 |
| 78 | 78 | 0.551 |
| 79 | 79 | 0.101 |
| 8 | 8 | 0.0159 |
| 80 | 80 | 0.764 |
| 81 | 81 | 0.596 |
| 82 | 82 | 0.609 |
| 83 | 83 | 0.949 |
| 84 | 84 | 0.112 |
| 85 | 85 | 0.371 |
| 86 | 86 | 0.95 |
| 87 | 87 | 0.096 |
| 88 | 88 | 0.757 |
| 89 | 89 | 0.157 |
| 9 | 9 | 0.311 |
| 90 | 90 | 0.191 |
| 91 | 91 | 0.38 |
| 92 | 92 | 0.441 |
| 93 | 93 | 0.292 |
| 94 | 94 | 0.832 |
| 95 | 95 | 0.0139 |
| 96 | 96 | 0.521 |
| 97 | 97 | 0.977 |
| 98 | 98 | 0.279 |
| 99 | 99 | 0.00786 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12086
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000153 human renal glomerular endothelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000666 (fenestrated cell)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
0002188 (glomerular endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0010317 (germ layer / neural crest derived structure)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0001285 (nephron)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000153 (human renal glomerular endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
