FF:11271-116H2: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (25 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005918 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005918 | ||
|accession_numbers=CAGE;DRX008296;DRR009168;DRZ000593;DRZ001978;DRZ011943;DRZ013328 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037206;DRR041572;DRZ007214 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0000412,UBERON:0002067,UBERON:0001992,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002559,CL:0000346,CL:1000428 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000072,FF:0000001,FF:0000071 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11271-116H2 | |id=FF:11271-116H2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000071 | ||
|is_obsolete= | |||
|library_id=CNhs12501 | |||
|library_id_phase_based=2:CNhs12501 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11271 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.ACAGTG.11271 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11271 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.ACAGTG.11271 | |||
|name=Hair Follicle Dermal Papilla Cells, donor1 | |name=Hair Follicle Dermal Papilla Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12501,LSID916,release011,COMPLETED | |profile_hcage=CNhs12501,LSID916,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.24868388132176,0,0.20819454184807,0.482404011509745,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462520888719976,0,0,0,0,0,0.657420358514153,0,0,0.482887309289541,0,0,0,0,0,0,0,0,0,0,0,0,0.316954817093033,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.518851537825799,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.205486247783224,0,0,0,-0.0773979271081807,-0.0066964469917957,0,0,0,0,-0.0980353512377064,0.066023754903178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.260415005878217,0.298496582075328,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.474086218752008,-0.143515142523472,0,0,0.0851438183287043,0,0.409001911408146,0,0,0,0,0,0,0,0.487724032115839,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,0.103529680509739,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,0.523467550791448,0,-0.120879483793741,0.326281743084729,0,0.643552139804561,-0.04680465889238,0,0,0,-0.00561661326705749,-0.263000658610678,0,0,-0.121779851751874,0.227652292847487,0,0,0.364333673230576,0,0.0442184323411747,0.241979613769724,0,-0.077093705290445,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,-0.0304099808375785,0,0,0,0.102141199470863,0,0,-0.373286155956567,0.346211922583543,0,-0.9241951806468,0,0.106612184398233,-0.0188138373216385,-0.00499325283247511,-0.262229409668296,0.261600062037007,-0.189981719549847,0,0.146825291706035,0.230216329269955,-0.215727972950344,0.139972309587534,-0.0302447930437535,0.561090463973719,0.0071902500004648,0,0,0,0.0956720572727847,0,-0.162266277643617,0.455475801482128,-0.064627960687769,0.368425133485157,0.037062255302377,0.0594130723253695,0.185426514179395,0.268389421077531,0.158407446171809,0.0113748381247184,0.0088355973514075,0,0,0,-0.0299267784040614,-0.0305338523251119,-0.615826173178679,0,-0.0749755504028347,-0.0683442610773682,0,-0.124946731064303,0.0672386017098427,0,0.103338029062339,0.36681328508749,0,0,0,0,0,-0.0536524632710755,-0.13049023162202,-0.232855561555545,0,-0.0125659148079013,0.0781118349725598,-0.297286080352587,0,0.0168711711120881,-0.202170761610805,0,-0.292633804596236,0,-0.0114272077612943,-0.0808179698797097,0.0995729775003835,-0.0133928939835914,-0.0584468268118252,-0.730471933775731,-0.708380651750326,-0.184766314635233,0.599648487037461,-0.101364614532639,-0.0881268324752877,0,-0.267700851449976,-0.270496220213378,0,-0.379028948525499,0,0.0813478582876843,0,0.071792461724629,0,-0.0191502861566565,0.21494450330897,-0.439289374580686,-0.268301265131937,0,-0.844589678092056,-0.788130937773974,0,0,0,0,0.258634828073507,-0.288694055104437,0.197351483543557,-0.138989456679195,0,0.0707356861205575,0,0,-0.241757354703103,-0.235476037764389,0,0.278792610140257,0.336387601745505,-0.195214129787149,-0.115971073434934,0,0,0.614596456094837,0,0,-0.60592806381803,0,0.241032520551581,-0.253326341486756,-0.0382758219733276,-0.108622809454255,0,0,-0.177527765965176,0,0.580693209557991,0,0,0.058040652935378,-0.116628112990133,0,0,0,0,0,0,0,0,0,0,0,-0.379151781190445,0.054168581191698,0,0,0,0,0,0,0,-0.110803081130275,0,0,0.497682427491274,0,-0.12301741567642,0,0,0,0,0.193278508854671,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.479132332991093,0,0,0,-0.27695440160179,0,0,0,0,0.0568413662600036,0,0,-0.63193017338638,0,-0.00230535785287533,-0.0815818795468414,0,0.076490100773427,0.659624238384699,0.177877362327313,0,0,0.147654779618258,0,0,-0.420100422564844,0,0.409001911408146,-0.0209247759461169,0,0,0,0,0,0,0.19468739900839,0,0,0,0,0,0,0,0,0,0,0,-0.185772294765811,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.726993749846053,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,0.518851537825799,0,0,0,0,0.96480802301949,0,0,0.131639779214632,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.20819454184807,0,0,0,0,0,0,0,0.585982546304124,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.24868388132176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204500955704073,0,0,0,0.679340358794549,0,0.0828759695712319,0.0428801535223964,0,0,0.332795137832678,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.657420358514153,0,0,-0.0920328098005262,0,0,0,0,0.577541925648492,0,0.121025070751437,0.305986864598552,-0.0572700841873375,0,0,0,0.150115383221618,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462520888719976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.409001911408146,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00357304445775142,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360779836169092,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.465984915868255,0,0,0,0,0.361364800747227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362233290779899,0,0,0.701586707953852,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.48749770297577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243927196747431,0.298496582075328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.150223120403325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.211394507341458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157236414286507,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482887309289541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204500955704073,0,0,0,0.257983967012616,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0.615843899068404,0,0,0,0,0.109251872677572,0,0,-0.0422874684771159,0,0.343452691635833,0.207646138059397,0,0,0,0,0,-0.0220203204819844,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,0.355907611761128,0.619414269861952,0,0.943516592536847,0.358129552762149,0,0,0.409001911408146,0.204500955704073,0,-0.174992895090299,0.1607511987293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.409001911408146,0,0,-0.0568589461625992,-0.269475635594569,0,-0.378836254350424,0,0,-0.56311693431363,0,0,0,-0.0959594073735869 | |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA602-R10a | |rna_catalog_number=CA602-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116H2 | |rna_tube_id=116H2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.ACAGTG | |||
|sample_age=28 | |sample_age=28 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.86394865039121e-230!GO:0005737;cytoplasm;1.22919575709661e-185!GO:0043226;organelle;3.8281206920577e-134!GO:0044444;cytoplasmic part;3.8281206920577e-134!GO:0043229;intracellular organelle;6.88578105458901e-134!GO:0043231;intracellular membrane-bound organelle;1.18079170258689e-131!GO:0043227;membrane-bound organelle;1.99567073717986e-131!GO:0044422;organelle part;1.58619683913479e-127!GO:0044446;intracellular organelle part;5.07715091008382e-126!GO:0032991;macromolecular complex;3.14789804060122e-90!GO:0030529;ribonucleoprotein complex;1.06653261765999e-74!GO:0005515;protein binding;1.63055478626104e-71!GO:0005739;mitochondrion;5.38413019624016e-63!GO:0044237;cellular metabolic process;4.143697994526e-60!GO:0044238;primary metabolic process;6.40488236870998e-60!GO:0043233;organelle lumen;1.62016911927752e-59!GO:0031974;membrane-enclosed lumen;1.62016911927752e-59!GO:0031090;organelle membrane;1.53989249785664e-56!GO:0003723;RNA binding;4.29144609570553e-56!GO:0044428;nuclear part;5.8336515371153e-53!GO:0043170;macromolecule metabolic process;7.68462155169563e-52!GO:0005840;ribosome;2.40926016516371e-50!GO:0019538;protein metabolic process;7.74982690284266e-50!GO:0006412;translation;1.61559757918172e-47!GO:0043234;protein complex;8.93302733812063e-47!GO:0003735;structural constituent of ribosome;1.50248186265216e-45!GO:0009058;biosynthetic process;5.34447681039297e-45!GO:0044260;cellular macromolecule metabolic process;2.8402245490957e-44!GO:0044267;cellular protein metabolic process;1.61521971291117e-43!GO:0044429;mitochondrial part;4.10899684096493e-42!GO:0044249;cellular biosynthetic process;1.35235134134654e-41!GO:0009059;macromolecule biosynthetic process;2.40219666642931e-41!GO:0016043;cellular component organization and biogenesis;1.23987627619922e-40!GO:0033279;ribosomal subunit;4.73132709260683e-38!GO:0015031;protein transport;5.99860104315627e-38!GO:0005829;cytosol;2.13479496527224e-37!GO:0033036;macromolecule localization;5.13025229196031e-37!GO:0031967;organelle envelope;2.4779324381865e-36!GO:0031975;envelope;5.2854205927838e-36!GO:0045184;establishment of protein localization;2.06832409000134e-35!GO:0008104;protein localization;6.60405453179275e-35!GO:0005634;nucleus;8.40758966716809e-34!GO:0006396;RNA processing;1.09584693889029e-33!GO:0031981;nuclear lumen;2.51151604113639e-33!GO:0046907;intracellular transport;3.96822684818072e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.45708451026277e-29!GO:0005740;mitochondrial envelope;1.04996185374298e-28!GO:0031966;mitochondrial membrane;2.09906269645632e-27!GO:0006886;intracellular protein transport;6.24622630544038e-27!GO:0016071;mRNA metabolic process;7.88962842169116e-27!GO:0065003;macromolecular complex assembly;1.00875714966397e-26!GO:0019866;organelle inner membrane;1.58001406292064e-25!GO:0005783;endoplasmic reticulum;2.01899152908148e-25!GO:0008380;RNA splicing;3.31875220290331e-25!GO:0043228;non-membrane-bound organelle;9.09933953865444e-25!GO:0043232;intracellular non-membrane-bound organelle;9.09933953865444e-25!GO:0005743;mitochondrial inner membrane;1.94858468357481e-24!GO:0012505;endomembrane system;6.51626458646127e-24!GO:0006996;organelle organization and biogenesis;1.28346588254593e-23!GO:0022607;cellular component assembly;5.72595606116112e-23!GO:0006397;mRNA processing;7.4358870407691e-23!GO:0006119;oxidative phosphorylation;1.43725309010582e-22!GO:0044432;endoplasmic reticulum part;2.12562241175714e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.86344810675887e-22!GO:0044445;cytosolic part;5.1266193423993e-22!GO:0051649;establishment of cellular localization;3.3535091339865e-20!GO:0015934;large ribosomal subunit;3.5265769461468e-20!GO:0044455;mitochondrial membrane part;4.24307012396092e-20!GO:0051641;cellular localization;4.9289579865994e-20!GO:0005654;nucleoplasm;7.37404407893263e-20!GO:0043283;biopolymer metabolic process;1.94302880128596e-19!GO:0015935;small ribosomal subunit;6.73423863948264e-19!GO:0016462;pyrophosphatase activity;1.12844696611477e-18!GO:0005681;spliceosome;1.30079151791443e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.61838412296283e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.23415538960773e-18!GO:0010467;gene expression;1.19180350281827e-17!GO:0005746;mitochondrial respiratory chain;1.40375303853343e-17!GO:0048770;pigment granule;1.62339063092453e-17!GO:0042470;melanosome;1.62339063092453e-17!GO:0017111;nucleoside-triphosphatase activity;1.84176341281366e-17!GO:0005794;Golgi apparatus;5.37997721117876e-17!GO:0000502;proteasome complex (sensu Eukaryota);6.84718572642305e-17!GO:0000166;nucleotide binding;7.52055268953184e-17!GO:0031980;mitochondrial lumen;1.31673217829355e-16!GO:0005759;mitochondrial matrix;1.31673217829355e-16!GO:0044451;nucleoplasm part;1.74337937461245e-16!GO:0006457;protein folding;1.82432311577593e-16!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.23201189509705e-16!GO:0051186;cofactor metabolic process;3.01417370374539e-16!GO:0008134;transcription factor binding;5.17116224787899e-16!GO:0005789;endoplasmic reticulum membrane;6.30079657836962e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.34622317498743e-15!GO:0043285;biopolymer catabolic process;2.72106366370914e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.95779233739731e-15!GO:0016874;ligase activity;5.57874799411289e-15!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.74393935270103e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.67791674165983e-15!GO:0003954;NADH dehydrogenase activity;7.67791674165983e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.67791674165983e-15!GO:0009057;macromolecule catabolic process;7.67791674165983e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.38632560356673e-14!GO:0044265;cellular macromolecule catabolic process;1.80676470189004e-14!GO:0006259;DNA metabolic process;3.46753231272885e-14!GO:0044248;cellular catabolic process;4.15786883194413e-14!GO:0030163;protein catabolic process;4.43680016127752e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.02896385373502e-14!GO:0005730;nucleolus;6.30207081774578e-14!GO:0048193;Golgi vesicle transport;7.37922883671067e-14!GO:0006605;protein targeting;7.9239731201298e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.61087427327985e-13!GO:0019941;modification-dependent protein catabolic process;2.66307854495839e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.66307854495839e-13!GO:0044257;cellular protein catabolic process;3.52419676685986e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.92563415005717e-13!GO:0042773;ATP synthesis coupled electron transport;3.92563415005717e-13!GO:0022618;protein-RNA complex assembly;4.37510583825667e-13!GO:0006512;ubiquitin cycle;5.80322998951774e-13!GO:0006511;ubiquitin-dependent protein catabolic process;6.15227417546631e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.8739441146629e-13!GO:0045271;respiratory chain complex I;6.8739441146629e-13!GO:0005747;mitochondrial respiratory chain complex I;6.8739441146629e-13!GO:0006732;coenzyme metabolic process;9.07956567369986e-13!GO:0051082;unfolded protein binding;2.05222040308474e-12!GO:0005761;mitochondrial ribosome;2.18006901061738e-12!GO:0000313;organellar ribosome;2.18006901061738e-12!GO:0016192;vesicle-mediated transport;2.33639165373557e-12!GO:0017076;purine nucleotide binding;2.33717851457697e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.45643315970248e-12!GO:0016491;oxidoreductase activity;2.48873465461332e-12!GO:0012501;programmed cell death;2.65632598744493e-12!GO:0007049;cell cycle;3.21272548567623e-12!GO:0009055;electron carrier activity;4.75879973091339e-12!GO:0032553;ribonucleotide binding;5.07677147663505e-12!GO:0032555;purine ribonucleotide binding;5.07677147663505e-12!GO:0006915;apoptosis;6.21946351489486e-12!GO:0008135;translation factor activity, nucleic acid binding;1.33251955080721e-11!GO:0005793;ER-Golgi intermediate compartment;1.35048546681736e-11!GO:0009259;ribonucleotide metabolic process;1.86770453829632e-11!GO:0009150;purine ribonucleotide metabolic process;3.04767899883767e-11!GO:0008219;cell death;3.35843013136033e-11!GO:0016265;death;3.35843013136033e-11!GO:0006163;purine nucleotide metabolic process;3.39971802039291e-11!GO:0005524;ATP binding;1.20856209979279e-10!GO:0009152;purine ribonucleotide biosynthetic process;1.24726767773673e-10!GO:0042623;ATPase activity, coupled;1.50268348587616e-10!GO:0006164;purine nucleotide biosynthetic process;1.5161289976896e-10!GO:0030554;adenyl nucleotide binding;1.57791804100622e-10!GO:0032559;adenyl ribonucleotide binding;2.53814818869696e-10!GO:0022402;cell cycle process;2.60131775517486e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.60449111796355e-10!GO:0000375;RNA splicing, via transesterification reactions;2.60449111796355e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.60449111796355e-10!GO:0009260;ribonucleotide biosynthetic process;2.86227828833612e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.84325256509956e-10!GO:0003712;transcription cofactor activity;3.97418207840892e-10!GO:0016887;ATPase activity;5.86354792599539e-10!GO:0006091;generation of precursor metabolites and energy;9.72801138783316e-10!GO:0009199;ribonucleoside triphosphate metabolic process;1.0383855879405e-09!GO:0043412;biopolymer modification;1.26788308756266e-09!GO:0042254;ribosome biogenesis and assembly;1.40160022318971e-09!GO:0009141;nucleoside triphosphate metabolic process;1.61728488551421e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.93966201984256e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.02497482602455e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.02497482602455e-09!GO:0009056;catabolic process;2.19594749690481e-09!GO:0008639;small protein conjugating enzyme activity;2.47100312563867e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.59343335583405e-09!GO:0003743;translation initiation factor activity;2.67358494796004e-09!GO:0004842;ubiquitin-protein ligase activity;3.05238116230307e-09!GO:0019787;small conjugating protein ligase activity;4.73143878572127e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.87931398154045e-09!GO:0006913;nucleocytoplasmic transport;4.89816926143979e-09!GO:0006464;protein modification process;5.05772046991598e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.50592307641207e-09!GO:0009142;nucleoside triphosphate biosynthetic process;7.80798467665306e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.80798467665306e-09!GO:0051169;nuclear transport;8.18068799731714e-09!GO:0005788;endoplasmic reticulum lumen;1.026796851486e-08!GO:0000278;mitotic cell cycle;1.14622599173572e-08!GO:0015986;ATP synthesis coupled proton transport;1.18281854703589e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.18281854703589e-08!GO:0009117;nucleotide metabolic process;1.21368615203226e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.2749253883286e-08!GO:0045333;cellular respiration;1.36777391824133e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.51279240435953e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.51279240435953e-08!GO:0030120;vesicle coat;1.56513215808788e-08!GO:0030662;coated vesicle membrane;1.56513215808788e-08!GO:0005635;nuclear envelope;1.56513215808788e-08!GO:0031965;nuclear membrane;1.58687741321786e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.78413252891087e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.80813226328617e-08!GO:0051188;cofactor biosynthetic process;1.91857274423786e-08!GO:0016604;nuclear body;2.27668649144314e-08!GO:0065004;protein-DNA complex assembly;2.34197050805698e-08!GO:0046034;ATP metabolic process;2.38160778731197e-08!GO:0009060;aerobic respiration;2.45686715380787e-08!GO:0019829;cation-transporting ATPase activity;2.94939210754261e-08!GO:0048475;coated membrane;3.11441013990233e-08!GO:0030117;membrane coat;3.11441013990233e-08!GO:0006413;translational initiation;3.33311719188077e-08!GO:0005839;proteasome core complex (sensu Eukaryota);3.48482176478328e-08!GO:0000074;regulation of progression through cell cycle;4.01526421140523e-08!GO:0051726;regulation of cell cycle;4.14034978599517e-08!GO:0048523;negative regulation of cellular process;4.69175656068634e-08!GO:0043067;regulation of programmed cell death;5.41928755541238e-08!GO:0042981;regulation of apoptosis;5.51921017043473e-08!GO:0044431;Golgi apparatus part;6.08994218919018e-08!GO:0008565;protein transporter activity;6.27988064573347e-08!GO:0017038;protein import;6.36322564147653e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.786852884129e-08!GO:0006461;protein complex assembly;8.19048602597053e-08!GO:0044453;nuclear membrane part;8.27633005052717e-08!GO:0016881;acid-amino acid ligase activity;9.81349690870177e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.48870984298401e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.48870984298401e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.48870984298401e-07!GO:0006754;ATP biosynthetic process;1.63303865904742e-07!GO:0006753;nucleoside phosphate metabolic process;1.63303865904742e-07!GO:0051246;regulation of protein metabolic process;1.63303865904742e-07!GO:0006446;regulation of translational initiation;1.64781111461292e-07!GO:0043038;amino acid activation;3.24844026456307e-07!GO:0006418;tRNA aminoacylation for protein translation;3.24844026456307e-07!GO:0043039;tRNA aminoacylation;3.24844026456307e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.48293832743778e-07!GO:0016787;hydrolase activity;3.59088951078571e-07!GO:0004386;helicase activity;4.06495234728159e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.39508833501089e-07!GO:0004298;threonine endopeptidase activity;4.49119541873965e-07!GO:0006399;tRNA metabolic process;4.88014812941754e-07!GO:0008026;ATP-dependent helicase activity;5.79693087829834e-07!GO:0043687;post-translational protein modification;6.06142554891022e-07!GO:0006974;response to DNA damage stimulus;6.25875252931303e-07!GO:0003924;GTPase activity;6.3671396878555e-07!GO:0030532;small nuclear ribonucleoprotein complex;6.63837124960491e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.93530780192814e-07!GO:0065002;intracellular protein transport across a membrane;7.09947962059104e-07!GO:0043069;negative regulation of programmed cell death;8.62336263591099e-07!GO:0048519;negative regulation of biological process;9.97923211339459e-07!GO:0006323;DNA packaging;1.00264754456422e-06!GO:0003676;nucleic acid binding;1.18919407271384e-06!GO:0009108;coenzyme biosynthetic process;1.24906837882859e-06!GO:0043066;negative regulation of apoptosis;1.26037428404429e-06!GO:0005798;Golgi-associated vesicle;1.49040522623963e-06!GO:0016607;nuclear speck;1.61638709764138e-06!GO:0006099;tricarboxylic acid cycle;1.72126342660887e-06!GO:0046356;acetyl-CoA catabolic process;1.72126342660887e-06!GO:0000139;Golgi membrane;1.81475022230707e-06!GO:0006916;anti-apoptosis;1.95543955293678e-06!GO:0051276;chromosome organization and biogenesis;2.16642210102515e-06!GO:0006366;transcription from RNA polymerase II promoter;2.21112638772543e-06!GO:0051187;cofactor catabolic process;2.24592227265238e-06!GO:0005773;vacuole;2.31273009460135e-06!GO:0045259;proton-transporting ATP synthase complex;2.35162456034102e-06!GO:0005643;nuclear pore;2.37489843362243e-06!GO:0006084;acetyl-CoA metabolic process;2.45710245824823e-06!GO:0006364;rRNA processing;2.84688963953209e-06!GO:0006334;nucleosome assembly;2.89529319979101e-06!GO:0048522;positive regulation of cellular process;3.26443909661585e-06!GO:0005768;endosome;4.57794134100524e-06!GO:0009109;coenzyme catabolic process;4.59016375358925e-06!GO:0016740;transferase activity;4.82780559116963e-06!GO:0046930;pore complex;5.06354879812358e-06!GO:0009165;nucleotide biosynthetic process;5.3946708738742e-06!GO:0005694;chromosome;5.69286478407499e-06!GO:0016072;rRNA metabolic process;5.7110828059408e-06!GO:0051789;response to protein stimulus;6.00973559032575e-06!GO:0006986;response to unfolded protein;6.00973559032575e-06!GO:0031252;leading edge;6.06771207871508e-06!GO:0044440;endosomal part;6.28735984727131e-06!GO:0010008;endosome membrane;6.28735984727131e-06!GO:0030133;transport vesicle;6.38980426689031e-06!GO:0003697;single-stranded DNA binding;6.38980426689031e-06!GO:0007005;mitochondrion organization and biogenesis;7.5373964180543e-06!GO:0016779;nucleotidyltransferase activity;1.03219272868514e-05!GO:0006333;chromatin assembly or disassembly;1.03994514326962e-05!GO:0008361;regulation of cell size;1.18650399772155e-05!GO:0016049;cell growth;1.18688808451878e-05!GO:0022403;cell cycle phase;1.31824516346718e-05!GO:0005667;transcription factor complex;1.3715493519936e-05!GO:0006752;group transfer coenzyme metabolic process;1.38898483684772e-05!GO:0006260;DNA replication;1.39540534158586e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.57879932518936e-05!GO:0000087;M phase of mitotic cell cycle;1.76103777038503e-05!GO:0044427;chromosomal part;1.79611173203554e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.83474869033093e-05!GO:0031988;membrane-bound vesicle;1.94820999984612e-05!GO:0007067;mitosis;1.98205717678452e-05!GO:0031497;chromatin assembly;2.07006474080775e-05!GO:0051170;nuclear import;2.0933577292561e-05!GO:0000151;ubiquitin ligase complex;2.13111694907182e-05!GO:0019843;rRNA binding;2.26291594899207e-05!GO:0044262;cellular carbohydrate metabolic process;2.40878250605945e-05!GO:0000323;lytic vacuole;2.51772860360684e-05!GO:0005764;lysosome;2.51772860360684e-05!GO:0003714;transcription corepressor activity;2.79215128208101e-05!GO:0032446;protein modification by small protein conjugation;2.88804701184593e-05!GO:0000785;chromatin;3.02821183819539e-05!GO:0006606;protein import into nucleus;3.24296333281069e-05!GO:0009719;response to endogenous stimulus;3.32206546412986e-05!GO:0007243;protein kinase cascade;3.3673305006294e-05!GO:0008654;phospholipid biosynthetic process;3.58543422360307e-05!GO:0016567;protein ubiquitination;3.79633907535367e-05!GO:0005762;mitochondrial large ribosomal subunit;3.87441325810141e-05!GO:0000315;organellar large ribosomal subunit;3.87441325810141e-05!GO:0030867;rough endoplasmic reticulum membrane;3.90047514532253e-05!GO:0005770;late endosome;4.23301992644218e-05!GO:0006281;DNA repair;4.90502153097111e-05!GO:0045786;negative regulation of progression through cell cycle;4.95315280678576e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.042058014468e-05!GO:0015399;primary active transmembrane transporter activity;5.042058014468e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.17070672818234e-05!GO:0003724;RNA helicase activity;5.72716203130687e-05!GO:0003713;transcription coactivator activity;7.74702409151377e-05!GO:0001558;regulation of cell growth;7.98022388537011e-05!GO:0006118;electron transport;7.98857268857514e-05!GO:0043566;structure-specific DNA binding;8.30265587062566e-05!GO:0006613;cotranslational protein targeting to membrane;8.40623240145641e-05!GO:0000245;spliceosome assembly;8.56916978698734e-05!GO:0015630;microtubule cytoskeleton;8.89119302666771e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00010755827099889!GO:0045454;cell redox homeostasis;0.000109476001005144!GO:0031982;vesicle;0.000110582936829533!GO:0048518;positive regulation of biological process;0.000119246308744221!GO:0031410;cytoplasmic vesicle;0.000122388828769339!GO:0031968;organelle outer membrane;0.000129135510687553!GO:0006403;RNA localization;0.000129430134275716!GO:0050657;nucleic acid transport;0.000129430134275716!GO:0051236;establishment of RNA localization;0.000129430134275716!GO:0050658;RNA transport;0.000129430134275716!GO:0006793;phosphorus metabolic process;0.000139226634772735!GO:0006796;phosphate metabolic process;0.000139226634772735!GO:0033116;ER-Golgi intermediate compartment membrane;0.000155260100908618!GO:0031324;negative regulation of cellular metabolic process;0.000162485491035233!GO:0009967;positive regulation of signal transduction;0.000167628431766335!GO:0019867;outer membrane;0.000169909394214297!GO:0005905;coated pit;0.000181800162340287!GO:0030176;integral to endoplasmic reticulum membrane;0.000184302623710473!GO:0016853;isomerase activity;0.00020029575666954!GO:0019899;enzyme binding;0.000200523451397378!GO:0005048;signal sequence binding;0.00022296968228839!GO:0022890;inorganic cation transmembrane transporter activity;0.000225481438069877!GO:0016310;phosphorylation;0.000232619816951006!GO:0006612;protein targeting to membrane;0.000240987136702707!GO:0043021;ribonucleoprotein binding;0.000304518364217984!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000324580721101367!GO:0030036;actin cytoskeleton organization and biogenesis;0.00033108126161954!GO:0005741;mitochondrial outer membrane;0.000362385045333409!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000376726572245734!GO:0006082;organic acid metabolic process;0.000443396005491299!GO:0019752;carboxylic acid metabolic process;0.000450676185004992!GO:0043492;ATPase activity, coupled to movement of substances;0.000466012898964511!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000471459566700311!GO:0005885;Arp2/3 protein complex;0.000478691961058223!GO:0005525;GTP binding;0.000570016959059463!GO:0065009;regulation of a molecular function;0.000590119093883062!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000651363280788541!GO:0016564;transcription repressor activity;0.000676770995306154!GO:0016859;cis-trans isomerase activity;0.000682760884044529!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000712007732246535!GO:0030663;COPI coated vesicle membrane;0.000712007732246535!GO:0030126;COPI vesicle coat;0.000712007732246535!GO:0008186;RNA-dependent ATPase activity;0.000712007732246535!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000712007732246535!GO:0016070;RNA metabolic process;0.000721989441399162!GO:0030658;transport vesicle membrane;0.000779254486904754!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000789078195371645!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000848681717578039!GO:0004576;oligosaccharyl transferase activity;0.000930379077012306!GO:0051329;interphase of mitotic cell cycle;0.000957124734808509!GO:0000279;M phase;0.000966041434078816!GO:0008250;oligosaccharyl transferase complex;0.00097229409002367!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0010125951845663!GO:0000786;nucleosome;0.00104051104809622!GO:0051301;cell division;0.00104381753744533!GO:0016568;chromatin modification;0.00109557959839014!GO:0051427;hormone receptor binding;0.00113219097458081!GO:0051920;peroxiredoxin activity;0.00118269284614485!GO:0005791;rough endoplasmic reticulum;0.00124524432390021!GO:0007010;cytoskeleton organization and biogenesis;0.00125301000936261!GO:0046474;glycerophospholipid biosynthetic process;0.00127818437591508!GO:0015992;proton transport;0.00129060981143951!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0013387704987918!GO:0048468;cell development;0.0013404202665891!GO:0030137;COPI-coated vesicle;0.00135442659574053!GO:0016563;transcription activator activity;0.00137024696151442!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00137291491491017!GO:0015002;heme-copper terminal oxidase activity;0.00137291491491017!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00137291491491017!GO:0004129;cytochrome-c oxidase activity;0.00137291491491017!GO:0009892;negative regulation of metabolic process;0.00140235970544108!GO:0030029;actin filament-based process;0.0014070866780732!GO:0006818;hydrogen transport;0.00143129345508558!GO:0030132;clathrin coat of coated pit;0.0015419369524829!GO:0051028;mRNA transport;0.0016501089452709!GO:0008047;enzyme activator activity;0.00166456412265721!GO:0016044;membrane organization and biogenesis;0.00167640608592268!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00167640608592268!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00167640608592268!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00167640608592268!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00168192098198342!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00170700461975764!GO:0051325;interphase;0.00171406686281382!GO:0004004;ATP-dependent RNA helicase activity;0.00182874060225758!GO:0040008;regulation of growth;0.00185616155658691!GO:0006891;intra-Golgi vesicle-mediated transport;0.00202869687605724!GO:0008610;lipid biosynthetic process;0.0021156793793678!GO:0035257;nuclear hormone receptor binding;0.00211828861429906!GO:0030660;Golgi-associated vesicle membrane;0.00217135808463056!GO:0000314;organellar small ribosomal subunit;0.00223371955960028!GO:0005763;mitochondrial small ribosomal subunit;0.00223371955960028!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00227002004207274!GO:0043681;protein import into mitochondrion;0.00229511763932378!GO:0030118;clathrin coat;0.0023937628860732!GO:0016126;sterol biosynthetic process;0.00241452248414855!GO:0004177;aminopeptidase activity;0.00244974491533896!GO:0030134;ER to Golgi transport vesicle;0.00256841441608327!GO:0042802;identical protein binding;0.0026123009435306!GO:0051168;nuclear export;0.00262156404211936!GO:0005769;early endosome;0.00268121508825291!GO:0018196;peptidyl-asparagine modification;0.00268854181364429!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00268854181364429!GO:0005813;centrosome;0.00274345711801704!GO:0051540;metal cluster binding;0.00274875724071639!GO:0051536;iron-sulfur cluster binding;0.00274875724071639!GO:0005774;vacuolar membrane;0.00300594624478259!GO:0046489;phosphoinositide biosynthetic process;0.00302132951972463!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00321229645053345!GO:0043623;cellular protein complex assembly;0.00326386956805582!GO:0032561;guanyl ribonucleotide binding;0.00343526867664465!GO:0019001;guanyl nucleotide binding;0.00343526867664465!GO:0046483;heterocycle metabolic process;0.0035877430040234!GO:0050662;coenzyme binding;0.003610295742158!GO:0031072;heat shock protein binding;0.00363162066521347!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00370905116287757!GO:0001726;ruffle;0.00370905116287757!GO:0045792;negative regulation of cell size;0.0037269489940694!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00372758697082939!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00372758697082939!GO:0007050;cell cycle arrest;0.00375105938537198!GO:0048144;fibroblast proliferation;0.00378357710776902!GO:0048145;regulation of fibroblast proliferation;0.00378357710776902!GO:0031301;integral to organelle membrane;0.0038320268018002!GO:0003899;DNA-directed RNA polymerase activity;0.00383978161607781!GO:0006950;response to stress;0.00388204646673845!GO:0030308;negative regulation of cell growth;0.00407638896838508!GO:0009615;response to virus;0.00434685350997325!GO:0008092;cytoskeletal protein binding;0.0045217476072345!GO:0043284;biopolymer biosynthetic process;0.00462476677268455!GO:0008632;apoptotic program;0.00490489483849636!GO:0006509;membrane protein ectodomain proteolysis;0.0050143317456437!GO:0033619;membrane protein proteolysis;0.0050143317456437!GO:0030127;COPII vesicle coat;0.0050143317456437!GO:0012507;ER to Golgi transport vesicle membrane;0.0050143317456437!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00587938327974049!GO:0006626;protein targeting to mitochondrion;0.0059528932328383!GO:0031902;late endosome membrane;0.00610692826804908!GO:0003729;mRNA binding;0.00615320130264077!GO:0005815;microtubule organizing center;0.00632364350269156!GO:0016363;nuclear matrix;0.0063364104447819!GO:0044437;vacuolar part;0.00658652096815257!GO:0048146;positive regulation of fibroblast proliferation;0.00663837794123631!GO:0030659;cytoplasmic vesicle membrane;0.00674023238193348!GO:0006352;transcription initiation;0.00674023238193348!GO:0050794;regulation of cellular process;0.00676011782437194!GO:0008243;plasminogen activator activity;0.00676011782437194!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00694736753462366!GO:0030521;androgen receptor signaling pathway;0.0071872663813371!GO:0051539;4 iron, 4 sulfur cluster binding;0.0078674201365378!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00791482472218105!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00791810846048422!GO:0005819;spindle;0.00800932047660139!GO:0046467;membrane lipid biosynthetic process;0.00813213818968339!GO:0017166;vinculin binding;0.00838125409141101!GO:0005765;lysosomal membrane;0.008396721300885!GO:0005869;dynactin complex;0.00875475772581774!GO:0030125;clathrin vesicle coat;0.00881584967927435!GO:0030665;clathrin coated vesicle membrane;0.00881584967927435!GO:0051252;regulation of RNA metabolic process;0.00926344800884732!GO:0043488;regulation of mRNA stability;0.00956341507372723!GO:0043487;regulation of RNA stability;0.00956341507372723!GO:0007006;mitochondrial membrane organization and biogenesis;0.00958462994861354!GO:0008139;nuclear localization sequence binding;0.00974556414784097!GO:0019798;procollagen-proline dioxygenase activity;0.00974556414784097!GO:0030027;lamellipodium;0.0097895607915657!GO:0006414;translational elongation;0.0106989789454332!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0107086056983251!GO:0043065;positive regulation of apoptosis;0.0110694333418978!GO:0006979;response to oxidative stress;0.0111565812493431!GO:0031418;L-ascorbic acid binding;0.0115722461250421!GO:0030041;actin filament polymerization;0.0118858963318692!GO:0007030;Golgi organization and biogenesis;0.0119089926574765!GO:0048487;beta-tubulin binding;0.0121940849431747!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0122635729708536!GO:0050790;regulation of catalytic activity;0.0122699530962438!GO:0048500;signal recognition particle;0.0122755741586136!GO:0005684;U2-dependent spliceosome;0.0123821205210061!GO:0031543;peptidyl-proline dioxygenase activity;0.012646516339639!GO:0006778;porphyrin metabolic process;0.0128265190858783!GO:0033013;tetrapyrrole metabolic process;0.0128265190858783!GO:0043068;positive regulation of programmed cell death;0.0135028667562362!GO:0046870;cadmium ion binding;0.0135028667562362!GO:0016481;negative regulation of transcription;0.013687660544474!GO:0006520;amino acid metabolic process;0.0138816316393685!GO:0000082;G1/S transition of mitotic cell cycle;0.0139754909551566!GO:0006402;mRNA catabolic process;0.0140726104962031!GO:0045045;secretory pathway;0.0141898590283727!GO:0006595;polyamine metabolic process;0.0147000678552992!GO:0045936;negative regulation of phosphate metabolic process;0.0150658905470424!GO:0005096;GTPase activator activity;0.0167015165855309!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0168874820277196!GO:0006984;ER-nuclear signaling pathway;0.0168917999152749!GO:0030119;AP-type membrane coat adaptor complex;0.0169910274314057!GO:0005975;carbohydrate metabolic process;0.0172667395524255!GO:0003746;translation elongation factor activity;0.0176951316875631!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0176951316875631!GO:0000059;protein import into nucleus, docking;0.0180875637212358!GO:0031529;ruffle organization and biogenesis;0.01825099586602!GO:0006740;NADPH regeneration;0.01825099586602!GO:0006098;pentose-phosphate shunt;0.01825099586602!GO:0030880;RNA polymerase complex;0.0188457893775035!GO:0005862;muscle thin filament tropomyosin;0.0193971532678547!GO:0007265;Ras protein signal transduction;0.0196117696825381!GO:0019206;nucleoside kinase activity;0.0196117696825381!GO:0006007;glucose catabolic process;0.0196394680847426!GO:0003711;transcription elongation regulator activity;0.0197244050898756!GO:0051101;regulation of DNA binding;0.020401919746086!GO:0006839;mitochondrial transport;0.0205795084341545!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0206614665174468!GO:0008538;proteasome activator activity;0.0210292219174852!GO:0006892;post-Golgi vesicle-mediated transport;0.0210721227117992!GO:0044433;cytoplasmic vesicle part;0.0211969695114567!GO:0005874;microtubule;0.02152391100818!GO:0003690;double-stranded DNA binding;0.0220227790411178!GO:0046519;sphingoid metabolic process;0.0220696969867363!GO:0008383;manganese superoxide dismutase activity;0.0221104997229276!GO:0001315;age-dependent response to reactive oxygen species;0.0221104997229276!GO:0009116;nucleoside metabolic process;0.0221132558129822!GO:0009112;nucleobase metabolic process;0.022287151965474!GO:0030032;lamellipodium biogenesis;0.0226104822979821!GO:0043022;ribosome binding;0.0232172802662097!GO:0006401;RNA catabolic process;0.0233006039683626!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0234335697767291!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.023561392464131!GO:0007051;spindle organization and biogenesis;0.02379382855603!GO:0046979;TAP2 binding;0.0247532633924503!GO:0046977;TAP binding;0.0247532633924503!GO:0046978;TAP1 binding;0.0247532633924503!GO:0003684;damaged DNA binding;0.0256621579077292!GO:0019318;hexose metabolic process;0.0261161210359587!GO:0005657;replication fork;0.0262565228454021!GO:0004527;exonuclease activity;0.0264344999129441!GO:0006790;sulfur metabolic process;0.0265052788765386!GO:0051087;chaperone binding;0.0267697325105348!GO:0051287;NAD binding;0.0267738839285275!GO:0000339;RNA cap binding;0.0269364982538065!GO:0008637;apoptotic mitochondrial changes;0.0269932945797568!GO:0048471;perinuclear region of cytoplasm;0.027029990392228!GO:0042168;heme metabolic process;0.0270499122244353!GO:0005832;chaperonin-containing T-complex;0.0270499122244353!GO:0003756;protein disulfide isomerase activity;0.0270499122244353!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0270499122244353!GO:0006897;endocytosis;0.0274323978257695!GO:0010324;membrane invagination;0.0274323978257695!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0274323978257695!GO:0045047;protein targeting to ER;0.0274323978257695!GO:0030145;manganese ion binding;0.0274385374492365!GO:0045926;negative regulation of growth;0.0274385374492365!GO:0030433;ER-associated protein catabolic process;0.0276865680735825!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0276865680735825!GO:0031625;ubiquitin protein ligase binding;0.0276865680735825!GO:0006733;oxidoreduction coenzyme metabolic process;0.0277511162446987!GO:0008180;signalosome;0.0279325925764079!GO:0031300;intrinsic to organelle membrane;0.0279325925764079!GO:0030131;clathrin adaptor complex;0.0280873511025229!GO:0006807;nitrogen compound metabolic process;0.0284012256082228!GO:0050811;GABA receptor binding;0.0288654380351926!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0289364847157415!GO:0005996;monosaccharide metabolic process;0.0289364847157415!GO:0016197;endosome transport;0.029228139941215!GO:0008022;protein C-terminus binding;0.0293271989845468!GO:0016408;C-acyltransferase activity;0.0293754225144709!GO:0033559;unsaturated fatty acid metabolic process;0.0296764884431401!GO:0006636;unsaturated fatty acid biosynthetic process;0.0296764884431401!GO:0006417;regulation of translation;0.0296933565823297!GO:0000075;cell cycle checkpoint;0.0297865198426568!GO:0008154;actin polymerization and/or depolymerization;0.0298850279925085!GO:0006779;porphyrin biosynthetic process;0.0299146807522985!GO:0033014;tetrapyrrole biosynthetic process;0.0299146807522985!GO:0035035;histone acetyltransferase binding;0.0299253343519157!GO:0008312;7S RNA binding;0.0304681934035524!GO:0006506;GPI anchor biosynthetic process;0.030541676599506!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0311765713363619!GO:0005811;lipid particle;0.0312379602557793!GO:0006220;pyrimidine nucleotide metabolic process;0.0313739843331691!GO:0008234;cysteine-type peptidase activity;0.0324411121191237!GO:0004364;glutathione transferase activity;0.033626018230142!GO:0042326;negative regulation of phosphorylation;0.0341932272614952!GO:0016051;carbohydrate biosynthetic process;0.0341932272614952!GO:0030833;regulation of actin filament polymerization;0.0346929663223257!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0350883580311288!GO:0000428;DNA-directed RNA polymerase complex;0.0350883580311288!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0351120557212036!GO:0004197;cysteine-type endopeptidase activity;0.0351120557212036!GO:0030140;trans-Golgi network transport vesicle;0.0355734197759195!GO:0012506;vesicle membrane;0.0361592098523034!GO:0006672;ceramide metabolic process;0.0364082702138996!GO:0007040;lysosome organization and biogenesis;0.0365630926466629!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0369707261153351!GO:0016653;oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;0.0369742542140859!GO:0015631;tubulin binding;0.0369742542140859!GO:0051098;regulation of binding;0.0370028425571412!GO:0046426;negative regulation of JAK-STAT cascade;0.0370028425571412!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0370028425571412!GO:0006611;protein export from nucleus;0.0373781404616177!GO:0006261;DNA-dependent DNA replication;0.0376047480068323!GO:0016584;nucleosome positioning;0.0376047480068323!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0378426865708712!GO:0006383;transcription from RNA polymerase III promoter;0.0379041073336248!GO:0006695;cholesterol biosynthetic process;0.0379591900479125!GO:0006650;glycerophospholipid metabolic process;0.0382434897484156!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0388505782217233!GO:0046966;thyroid hormone receptor binding;0.0388505782217233!GO:0031272;regulation of pseudopodium formation;0.0392772267600295!GO:0031269;pseudopodium formation;0.0392772267600295!GO:0031344;regulation of cell projection organization and biogenesis;0.0392772267600295!GO:0031268;pseudopodium organization and biogenesis;0.0392772267600295!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0392772267600295!GO:0031274;positive regulation of pseudopodium formation;0.0392772267600295!GO:0043433;negative regulation of transcription factor activity;0.0392772267600295!GO:0032507;maintenance of cellular protein localization;0.0392772267600295!GO:0009119;ribonucleoside metabolic process;0.0396366691423224!GO:0035258;steroid hormone receptor binding;0.0398140458180102!GO:0004128;cytochrome-b5 reductase activity;0.0410150998462192!GO:0048037;cofactor binding;0.0415011380532797!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0444705883626358!GO:0010257;NADH dehydrogenase complex assembly;0.0444705883626358!GO:0033108;mitochondrial respiratory chain complex assembly;0.0444705883626358!GO:0003678;DNA helicase activity;0.0447929565188455!GO:0051059;NF-kappaB binding;0.0455111044977419!GO:0006497;protein amino acid lipidation;0.0455111044977419!GO:0050681;androgen receptor binding;0.0474598083642876!GO:0008537;proteasome activator complex;0.0481542655452569!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0484543865828401!GO:0006607;NLS-bearing substrate import into nucleus;0.0493825945225872!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0494369206195767!GO:0005581;collagen;0.0496945651952254 | |||
|sample_id=11271 | |sample_id=11271 | ||
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | |sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | ||
| Line 76: | Line 105: | ||
|sample_tissue=hair follicle | |sample_tissue=hair follicle | ||
|top_motifs=ZNF238:2.75071826586;HES1:1.88002808725;TFAP4:1.69174411471;NFATC1..3:1.36176207036;ALX4:1.30903999586;TBP:1.28419858181;SRF:1.24349069938;ESR1:1.10674527037;NFIX:1.10539347269;ESRRA:1.06934040363;GTF2A1,2:1.06150622715;RXR{A,B,G}:1.03915380791;TP53:1.03765088022;EN1,2:1.0369025851;NKX3-2:1.03625714379;TLX1..3_NFIC{dimer}:1.00780256005;TFAP2{A,C}:0.969121017354;GFI1B:0.934596278025;PBX1:0.866637464481;POU2F1..3:0.851554949268;NANOG{mouse}:0.792865749329;IRF1,2:0.750016870671;PPARG:0.686737514801;HOX{A5,B5}:0.65683995811;HMX1:0.650608562406;ATF6:0.642946257236;CRX:0.633892869209;NFE2L2:0.61910680289;XBP1:0.611824726802;PAX1,9:0.56787937882;IKZF1:0.566348996629;MYBL2:0.562561526888;GCM1,2:0.550756984038;ZBTB6:0.544138980946;IRF7:0.542353790118;TFCP2:0.527499573829;LEF1_TCF7_TCF7L1,2:0.513353509002;TEAD1:0.504720559017;GLI1..3:0.490431759449;HAND1,2:0.483620750169;NR1H4:0.469693844134;AHR_ARNT_ARNT2:0.463113705388;SOX17:0.457618662886;PRRX1,2:0.446486809518;YY1:0.425376555318;MTF1:0.41193625877;MAFB:0.386172646006;NHLH1,2:0.380823918662;HIF1A:0.375126454921;NKX3-1:0.36219702271;GTF2I:0.358619461711;HLF:0.327508067372;TBX4,5:0.307749080977;HSF1,2:0.289353993918;RXRA_VDR{dimer}:0.28730535983;PATZ1:0.281586824021;ZNF384:0.27430420748;PAX6:0.264229936652;STAT2,4,6:0.254620798476;KLF4:0.250456265698;GFI1:0.238753018553;NFKB1_REL_RELA:0.230272472724;CDC5L:0.213385505191;BACH2:0.209229084399;NFE2L1:0.203902536917;GZF1:0.203393844861;UFEwm:0.202003696214;FOS_FOS{B,L1}_JUN{B,D}:0.19750385861;NR3C1:0.189020994988;PAX3,7:0.179367537022;HNF1A:0.174694541645;MZF1:0.146848194676;NFE2:0.128256644306;RUNX1..3:0.104373166584;TLX2:0.104151759584;EBF1:0.0980244613669;PAX2:0.094323632693;STAT5{A,B}:0.0728257742596;MTE{core}:0.0583446210481;JUN:0.0286103609897;FOXA2:0.0217224073074;HOX{A6,A7,B6,B7}:0.00627261022639;REST:-0.00135614252819;HOXA9_MEIS1:-0.00153267647567;PAX8:-0.00166461786133;ZNF148:-0.0226936264316;MAZ:-0.0252584579961;MYFfamily:-0.0406800182393;ETS1,2:-0.0446445051658;XCPE1{core}:-0.054108551728;TAL1_TCF{3,4,12}:-0.0546156418962;HNF4A_NR2F1,2:-0.0600324711508;TFAP2B:-0.0625893851153;CEBPA,B_DDIT3:-0.0703563727195;DBP:-0.087228082878;ZNF423:-0.0888685796354;SMAD1..7,9:-0.0908581379339;SPZ1:-0.0962518498387;AR:-0.106369827078;LHX3,4:-0.125496617072;NFIL3:-0.136174914425;ZIC1..3:-0.154571603532;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.154865149968;MEF2{A,B,C,D}:-0.158853303347;TFDP1:-0.165123480017;NANOG:-0.16567939464;OCT4_SOX2{dimer}:-0.167980362106;DMAP1_NCOR{1,2}_SMARC:-0.17844245253;ALX1:-0.185921842906;TOPORS:-0.218228411927;NKX2-3_NKX2-5:-0.219349102698;NR5A1,2:-0.230147887645;SOX5:-0.257688353886;NKX2-2,8:-0.258941911333;bHLH_family:-0.269678974987;PRDM1:-0.271300633528;FOXO1,3,4:-0.278219198401;MYB:-0.292802347055;RFX1:-0.294043337862;SPIB:-0.299230470914;HOX{A4,D4}:-0.30612323178;FOSL2:-0.327316700823;PDX1:-0.351170948706;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.352579456596;POU3F1..4:-0.364241829454;HIC1:-0.364878351144;SOX{8,9,10}:-0.378349799059;EVI1:-0.392733149965;ELF1,2,4:-0.395162321724;RREB1:-0.395314860222;ATF5_CREB3:-0.408992133081;TGIF1:-0.430744617882;FOXL1:-0.463169008624;SPI1:-0.474085825699;FOXP3:-0.489640900722;AIRE:-0.490403453017;NFY{A,B,C}:-0.500167386257;HMGA1,2:-0.510020036235;FOX{D1,D2}:-0.517384586497;POU6F1:-0.539120380232;ZNF143:-0.539282905191;MED-1{core}:-0.546126612435;RORA:-0.56050780058;GATA6:-0.572397320593;EP300:-0.576990376743;POU5F1:-0.578470563492;STAT1,3:-0.579675506349;PITX1..3:-0.598148692213;SP1:-0.599152774502;FOXM1:-0.610129664721;GATA4:-0.625242879622;E2F1..5:-0.658812370336;ELK1,4_GABP{A,B1}:-0.692604645188;NR6A1:-0.694599917216;SNAI1..3:-0.699710686439;NKX2-1,4:-0.717448961006;RFX2..5_RFXANK_RFXAP:-0.726904239781;RBPJ:-0.752644516753;ONECUT1,2:-0.759352346622;VSX1,2:-0.766237429497;HBP1_HMGB_SSRP1_UBTF:-0.770641589493;POU1F1:-0.776656705571;ATF2:-0.807123340062;CUX2:-0.824664222548;PAX4:-0.837392899444;ZFP161:-0.855356488289;ADNP_IRX_SIX_ZHX:-0.862062219497;ZEB1:-0.862972092305;TEF:-0.959832933219;SOX2:-0.962186051765;FOXN1:-0.985247816428;CDX1,2,4:-1.01639983303;LMO2:-1.01671386533;ATF4:-1.03307690778;BPTF:-1.06051145428;NRF1:-1.07117142899;CREB1:-1.07472210419;FOX{F1,F2,J1}:-1.10281983485;EGR1..3:-1.11200004448;MYOD1:-1.12023909517;SREBF1,2:-1.17455906984;FOXQ1:-1.18786197015;PAX5:-1.21960035744;IKZF2:-1.24211973808;NKX6-1,2:-1.2617134861;ZBTB16:-1.35410323246;T:-1.56953671449;FOXP1:-1.59822400634;FOXD3:-1.60262790406;ARID5B:-1.62781776477;BREu{core}:-1.63261044523;FOX{I1,J2}:-1.71650476799 | |top_motifs=ZNF238:2.75071826586;HES1:1.88002808725;TFAP4:1.69174411471;NFATC1..3:1.36176207036;ALX4:1.30903999586;TBP:1.28419858181;SRF:1.24349069938;ESR1:1.10674527037;NFIX:1.10539347269;ESRRA:1.06934040363;GTF2A1,2:1.06150622715;RXR{A,B,G}:1.03915380791;TP53:1.03765088022;EN1,2:1.0369025851;NKX3-2:1.03625714379;TLX1..3_NFIC{dimer}:1.00780256005;TFAP2{A,C}:0.969121017354;GFI1B:0.934596278025;PBX1:0.866637464481;POU2F1..3:0.851554949268;NANOG{mouse}:0.792865749329;IRF1,2:0.750016870671;PPARG:0.686737514801;HOX{A5,B5}:0.65683995811;HMX1:0.650608562406;ATF6:0.642946257236;CRX:0.633892869209;NFE2L2:0.61910680289;XBP1:0.611824726802;PAX1,9:0.56787937882;IKZF1:0.566348996629;MYBL2:0.562561526888;GCM1,2:0.550756984038;ZBTB6:0.544138980946;IRF7:0.542353790118;TFCP2:0.527499573829;LEF1_TCF7_TCF7L1,2:0.513353509002;TEAD1:0.504720559017;GLI1..3:0.490431759449;HAND1,2:0.483620750169;NR1H4:0.469693844134;AHR_ARNT_ARNT2:0.463113705388;SOX17:0.457618662886;PRRX1,2:0.446486809518;YY1:0.425376555318;MTF1:0.41193625877;MAFB:0.386172646006;NHLH1,2:0.380823918662;HIF1A:0.375126454921;NKX3-1:0.36219702271;GTF2I:0.358619461711;HLF:0.327508067372;TBX4,5:0.307749080977;HSF1,2:0.289353993918;RXRA_VDR{dimer}:0.28730535983;PATZ1:0.281586824021;ZNF384:0.27430420748;PAX6:0.264229936652;STAT2,4,6:0.254620798476;KLF4:0.250456265698;GFI1:0.238753018553;NFKB1_REL_RELA:0.230272472724;CDC5L:0.213385505191;BACH2:0.209229084399;NFE2L1:0.203902536917;GZF1:0.203393844861;UFEwm:0.202003696214;FOS_FOS{B,L1}_JUN{B,D}:0.19750385861;NR3C1:0.189020994988;PAX3,7:0.179367537022;HNF1A:0.174694541645;MZF1:0.146848194676;NFE2:0.128256644306;RUNX1..3:0.104373166584;TLX2:0.104151759584;EBF1:0.0980244613669;PAX2:0.094323632693;STAT5{A,B}:0.0728257742596;MTE{core}:0.0583446210481;JUN:0.0286103609897;FOXA2:0.0217224073074;HOX{A6,A7,B6,B7}:0.00627261022639;REST:-0.00135614252819;HOXA9_MEIS1:-0.00153267647567;PAX8:-0.00166461786133;ZNF148:-0.0226936264316;MAZ:-0.0252584579961;MYFfamily:-0.0406800182393;ETS1,2:-0.0446445051658;XCPE1{core}:-0.054108551728;TAL1_TCF{3,4,12}:-0.0546156418962;HNF4A_NR2F1,2:-0.0600324711508;TFAP2B:-0.0625893851153;CEBPA,B_DDIT3:-0.0703563727195;DBP:-0.087228082878;ZNF423:-0.0888685796354;SMAD1..7,9:-0.0908581379339;SPZ1:-0.0962518498387;AR:-0.106369827078;LHX3,4:-0.125496617072;NFIL3:-0.136174914425;ZIC1..3:-0.154571603532;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.154865149968;MEF2{A,B,C,D}:-0.158853303347;TFDP1:-0.165123480017;NANOG:-0.16567939464;OCT4_SOX2{dimer}:-0.167980362106;DMAP1_NCOR{1,2}_SMARC:-0.17844245253;ALX1:-0.185921842906;TOPORS:-0.218228411927;NKX2-3_NKX2-5:-0.219349102698;NR5A1,2:-0.230147887645;SOX5:-0.257688353886;NKX2-2,8:-0.258941911333;bHLH_family:-0.269678974987;PRDM1:-0.271300633528;FOXO1,3,4:-0.278219198401;MYB:-0.292802347055;RFX1:-0.294043337862;SPIB:-0.299230470914;HOX{A4,D4}:-0.30612323178;FOSL2:-0.327316700823;PDX1:-0.351170948706;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.352579456596;POU3F1..4:-0.364241829454;HIC1:-0.364878351144;SOX{8,9,10}:-0.378349799059;EVI1:-0.392733149965;ELF1,2,4:-0.395162321724;RREB1:-0.395314860222;ATF5_CREB3:-0.408992133081;TGIF1:-0.430744617882;FOXL1:-0.463169008624;SPI1:-0.474085825699;FOXP3:-0.489640900722;AIRE:-0.490403453017;NFY{A,B,C}:-0.500167386257;HMGA1,2:-0.510020036235;FOX{D1,D2}:-0.517384586497;POU6F1:-0.539120380232;ZNF143:-0.539282905191;MED-1{core}:-0.546126612435;RORA:-0.56050780058;GATA6:-0.572397320593;EP300:-0.576990376743;POU5F1:-0.578470563492;STAT1,3:-0.579675506349;PITX1..3:-0.598148692213;SP1:-0.599152774502;FOXM1:-0.610129664721;GATA4:-0.625242879622;E2F1..5:-0.658812370336;ELK1,4_GABP{A,B1}:-0.692604645188;NR6A1:-0.694599917216;SNAI1..3:-0.699710686439;NKX2-1,4:-0.717448961006;RFX2..5_RFXANK_RFXAP:-0.726904239781;RBPJ:-0.752644516753;ONECUT1,2:-0.759352346622;VSX1,2:-0.766237429497;HBP1_HMGB_SSRP1_UBTF:-0.770641589493;POU1F1:-0.776656705571;ATF2:-0.807123340062;CUX2:-0.824664222548;PAX4:-0.837392899444;ZFP161:-0.855356488289;ADNP_IRX_SIX_ZHX:-0.862062219497;ZEB1:-0.862972092305;TEF:-0.959832933219;SOX2:-0.962186051765;FOXN1:-0.985247816428;CDX1,2,4:-1.01639983303;LMO2:-1.01671386533;ATF4:-1.03307690778;BPTF:-1.06051145428;NRF1:-1.07117142899;CREB1:-1.07472210419;FOX{F1,F2,J1}:-1.10281983485;EGR1..3:-1.11200004448;MYOD1:-1.12023909517;SREBF1,2:-1.17455906984;FOXQ1:-1.18786197015;PAX5:-1.21960035744;IKZF2:-1.24211973808;NKX6-1,2:-1.2617134861;ZBTB16:-1.35410323246;T:-1.56953671449;FOXP1:-1.59822400634;FOXD3:-1.60262790406;ARID5B:-1.62781776477;BREu{core}:-1.63261044523;FOX{I1,J2}:-1.71650476799 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11271-116H2;search_select_hide=table117:FF:11271-116H2 | |||
}} | }} | ||
Latest revision as of 16:29, 3 June 2020
| Name: | Hair Follicle Dermal Papilla Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12501 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12501
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12501
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.315 |
| 10 | 10 | 0.828 |
| 100 | 100 | 0.879 |
| 101 | 101 | 0.895 |
| 102 | 102 | 0.354 |
| 103 | 103 | 0.0962 |
| 104 | 104 | 0.365 |
| 105 | 105 | 0.559 |
| 106 | 106 | 0.00476 |
| 107 | 107 | 0.0298 |
| 108 | 108 | 0.791 |
| 109 | 109 | 0.0926 |
| 11 | 11 | 0.0802 |
| 110 | 110 | 0.205 |
| 111 | 111 | 0.699 |
| 112 | 112 | 0.133 |
| 113 | 113 | 0.359 |
| 114 | 114 | 0.115 |
| 115 | 115 | 0.436 |
| 116 | 116 | 0.0911 |
| 117 | 117 | 0.451 |
| 118 | 118 | 0.864 |
| 119 | 119 | 0.284 |
| 12 | 12 | 0.874 |
| 120 | 120 | 0.332 |
| 121 | 121 | 0.426 |
| 122 | 122 | 0.477 |
| 123 | 123 | 0.222 |
| 124 | 124 | 0.269 |
| 125 | 125 | 0.957 |
| 126 | 126 | 0.285 |
| 127 | 127 | 0.0434 |
| 128 | 128 | 0.00555 |
| 129 | 129 | 0.38 |
| 13 | 13 | 0.521 |
| 130 | 130 | 0.0774 |
| 131 | 131 | 0.697 |
| 132 | 132 | 0.82 |
| 133 | 133 | 0.548 |
| 134 | 134 | 0.137 |
| 135 | 135 | 0.0279 |
| 136 | 136 | 0.355 |
| 137 | 137 | 0.477 |
| 138 | 138 | 0.767 |
| 139 | 139 | 0.436 |
| 14 | 14 | 0.86 |
| 140 | 140 | 0.991 |
| 141 | 141 | 0.397 |
| 142 | 142 | 0.0574 |
| 143 | 143 | 0.0305 |
| 144 | 144 | 0.519 |
| 145 | 145 | 0.162 |
| 146 | 146 | 0.156 |
| 147 | 147 | 0.362 |
| 148 | 148 | 0.471 |
| 149 | 149 | 0.0357 |
| 15 | 15 | 0.48 |
| 150 | 150 | 0.173 |
| 151 | 151 | 0.582 |
| 152 | 152 | 0.0948 |
| 153 | 153 | 0.803 |
| 154 | 154 | 0.668 |
| 155 | 155 | 0.265 |
| 156 | 156 | 0.823 |
| 157 | 157 | 0.642 |
| 158 | 158 | 0.342 |
| 159 | 159 | 0.451 |
| 16 | 16 | 0.182 |
| 160 | 160 | 0.0961 |
| 161 | 161 | 0.653 |
| 162 | 162 | 0.294 |
| 163 | 163 | 0.929 |
| 164 | 164 | 0.851 |
| 165 | 165 | 0.437 |
| 166 | 166 | 0.321 |
| 167 | 167 | 0.962 |
| 168 | 168 | 0.257 |
| 169 | 169 | 0.0227 |
| 17 | 17 | 0.151 |
| 18 | 18 | 0.0795 |
| 19 | 19 | 0.0224 |
| 2 | 2 | 0.165 |
| 20 | 20 | 0.464 |
| 21 | 21 | 0.461 |
| 22 | 22 | 0.138 |
| 23 | 23 | 0.117 |
| 24 | 24 | 0.44 |
| 25 | 25 | 0.964 |
| 26 | 26 | 0.0214 |
| 27 | 27 | 0.241 |
| 28 | 28 | 0.942 |
| 29 | 29 | 0.277 |
| 3 | 3 | 0.461 |
| 30 | 30 | 0.155 |
| 31 | 31 | 0.836 |
| 32 | 32 | 5.48849e-5 |
| 33 | 33 | 0.621 |
| 34 | 34 | 0.304 |
| 35 | 35 | 0.516 |
| 36 | 36 | 0.86 |
| 37 | 37 | 0.0669 |
| 38 | 38 | 0.543 |
| 39 | 39 | 0.75 |
| 4 | 4 | 0.725 |
| 40 | 40 | 0.565 |
| 41 | 41 | 0.144 |
| 42 | 42 | 0.607 |
| 43 | 43 | 0.12 |
| 44 | 44 | 0.484 |
| 45 | 45 | 0.165 |
| 46 | 46 | 0.071 |
| 47 | 47 | 0.295 |
| 48 | 48 | 0.307 |
| 49 | 49 | 0.251 |
| 5 | 5 | 0.452 |
| 50 | 50 | 0.529 |
| 51 | 51 | 0.646 |
| 52 | 52 | 0.169 |
| 53 | 53 | 0.795 |
| 54 | 54 | 0.716 |
| 55 | 55 | 0.531 |
| 56 | 56 | 0.287 |
| 57 | 57 | 0.288 |
| 58 | 58 | 0.534 |
| 59 | 59 | 0.0362 |
| 6 | 6 | 0.666 |
| 60 | 60 | 0.0932 |
| 61 | 61 | 0.686 |
| 62 | 62 | 0.203 |
| 63 | 63 | 0.178 |
| 64 | 64 | 0.309 |
| 65 | 65 | 0.0666 |
| 66 | 66 | 0.757 |
| 67 | 67 | 0.688 |
| 68 | 68 | 0.0793 |
| 69 | 69 | 0.938 |
| 7 | 7 | 0.678 |
| 70 | 70 | 0.0527 |
| 71 | 71 | 0.112 |
| 72 | 72 | 0.347 |
| 73 | 73 | 0.0991 |
| 74 | 74 | 0.536 |
| 75 | 75 | 0.497 |
| 76 | 76 | 0.819 |
| 77 | 77 | 0.0441 |
| 78 | 78 | 0.904 |
| 79 | 79 | 0.0234 |
| 8 | 8 | 0.103 |
| 80 | 80 | 0.251 |
| 81 | 81 | 0.666 |
| 82 | 82 | 0.412 |
| 83 | 83 | 0.0972 |
| 84 | 84 | 0.533 |
| 85 | 85 | 0.0368 |
| 86 | 86 | 0.365 |
| 87 | 87 | 0.139 |
| 88 | 88 | 0.457 |
| 89 | 89 | 0.061 |
| 9 | 9 | 0.0911 |
| 90 | 90 | 0.129 |
| 91 | 91 | 0.701 |
| 92 | 92 | 0.202 |
| 93 | 93 | 0.93 |
| 94 | 94 | 0.189 |
| 95 | 95 | 0.378 |
| 96 | 96 | 0.477 |
| 97 | 97 | 0.52 |
| 98 | 98 | 0.246 |
| 99 | 99 | 0.225 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12501
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000071 human hair follicle dermal papilla cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002559 (hair follicle cell)
0000346 (hair follicle dermal papilla cell)
1000428 (stem cell of epidermis)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002073 (hair follicle)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0000412 (dermal papilla)
0002067 (dermis)
0001992 (papillary layer of dermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000072 (human hair follicle cell sample)
0000001 (sample)
0000071 (human hair follicle dermal papilla cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000221 (ectodermal cell)
