FFCP PHASE1:Mm9::chr7:107756401..107756413,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19346|HGNC=|MCL_coexpression_id=1|UniProt=P35279|association_with_transcript=197bp_to_ENSMUST00000098252_5end|description=CAGE_peak_4_at_Rab6a_5end|id=chr7:107756401..107756413,+|ontology_enrichment_celltype=CL:0000540!1.59e-13!33;CL:0000047!1.59e-13!33;CL:0000031!1.59e-13!33;CL:0000404!1.59e-13!33;CL:0000117!5.27e-13!23;CL:0000337!5.27e-13!23;CL:0000221!2.47e-11!44;CL:0000133!2.47e-11!44;CL:0002319!5.90e-11!43;CL:0000393!2.32e-10!39;CL:0000211!2.32e-10!39;CL:0000055!4.91e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,8.16e-15,23;CL:0000337,8.16e-15,23;CL:0000540,2.13e-14,33;CL:0000047,2.13e-14,33;CL:0000031,2.13e-14,33;CL:0000404,2.13e-14,33;CL:0000221,1.62e-11,44;CL:0000133,1.62e-11,44;CL:0000393,2.64e-11,39;CL:0000211,2.64e-11,39;CL:0002319,4.48e-11,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.48e-24!75;UBERON:0001016!2.48e-24!75;UBERON:0001017!7.93e-24!73;UBERON:0005743!7.93e-24!73;UBERON:0004121!7.85e-22!102;UBERON:0000924!7.85e-22!102;UBERON:0006601!7.85e-22!102;UBERON:0002346!1.48e-20!71;UBERON:0003075!1.48e-20!71;UBERON:0007284!1.48e-20!71;UBERON:0001049!1.45e-19!52;UBERON:0005068!1.45e-19!52;UBERON:0006241!1.45e-19!52;UBERON:0007135!1.45e-19!52;UBERON:0000033!3.99e-19!63;UBERON:0000955!4.12e-18!50;UBERON:0006238!4.12e-18!50;UBERON:0002616!1.29e-17!49;UBERON:0002020!2.36e-17!34;UBERON:0003056!1.61e-16!49;UBERON:0003080!6.68e-15!40;UBERON:0002780!2.89e-14!39;UBERON:0001890!2.89e-14!39;UBERON:0006240!2.89e-14!39;UBERON:0002791!4.50e-14!29;UBERON:0003528!4.50e-14!29;UBERON:0001893!4.50e-14!29;UBERON:0000956!1.81e-09!21;UBERON:0001869!1.81e-09!21;UBERON:0000203!1.81e-09!21;UBERON:0007811!2.19e-08!86;UBERON:0002619!9.49e-08!17;UBERON:0000153!1.77e-07!94;UBERON:0002021!6.55e-07!10;UBERON:0000411!6.55e-07!10;UBERON:0001950!6.55e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.68e-26,75;UBERON:0001017,3.14e-25,73;UBERON:0004121,1.66e-23,95;UBERON:0000924,1.66e-23,95;UBERON:0006601,1.66e-23,95;UBERON:0000073,3.29e-22,54;UBERON:0002346,3.62e-22,64;UBERON:0003075,3.62e-22,64;UBERON:0007284,3.62e-22,64;UBERON:0001049,1.36e-20,52;UBERON:0005068,1.36e-20,52;UBERON:0006241,1.36e-20,52;UBERON:0007135,1.36e-20,52;UBERON:0010371,5.54e-19,73;UBERON:0002020,9.84e-19,34;UBERON:0000955,1.33e-16,47;UBERON:0006238,1.33e-16,47;UBERON:0003056,1.55e-16,49;UBERON:0002616,4.93e-16,46;UBERON:0003080,5.48e-15,40;UBERON:0003528,8.01e-15,29;UBERON:0002791,8.01e-15,29;UBERON:0001893,8.01e-15,29;UBERON:0002780,2.99e-14,39;UBERON:0001890,2.99e-14,39;UBERON:0006240,2.99e-14,39;UBERON:0010314,4.10e-14,92;UBERON:0000956,2.25e-09,21;UBERON:0001869,2.25e-09,21;UBERON:0000203,2.25e-09,21;UBERON:0002021,4.22e-08,10;UBERON:0000411,4.22e-08,10;UBERON:0001950,4.22e-08,10;UBERON:0002619,2.47e-07,17;UBERON:0002420,5.53e-07,8;UBERON:0007245,5.53e-07,8;UBERON:0010009,5.53e-07,8;UBERON:0010011,5.53e-07,8;UBERON:0000454,5.53e-07,8|phase1_expression=1.76163731815273,1.39590163055744,1.81999695755814,1.20985684522732,1.50268718983904,0.671517087647559,0.467225281191051,1.16210991097419,1.54867594366833,1.87251621057595,0,0.0797721589953364,1.36960583944965,0.699363219351979,0.666219523631325,0.404950534779652,0,0.157731082679119,0,0,8.1641558545027,0.297872853602656,0,0.319984845586813,0,0,0.430761996159075,0.215471232685889,0.760093677825496,0.504060259519861,0.221730510655305,0.635030673459631,0,0,0.577703239502549,0.166234645358492,0,1.67412652294763,0,0.523523743973798,2.35292595212406,2.73218193983378,0.485510353031154,0.125896817975577,0.101376931219515,0.183546752161682,0.782391344348039,0,0.878744730937887,0.972149495371417,0.419959264876088,0,0.335565212115473,0,2.01656279485478,0.771778308107841,1.14613375975503,1.03134418455488,8.6996078169627,14.2827564403449,4.43681982454325,0.338844532069132,1.77858959222228,0,0,0.7104801149461,1.79760066311043,1.53687322128622,3.31806759387129,2.97013064329719,3.15487442027073,26.8511925339575,23.1911967999194,3.67472397644862,3.45043695665651,0.919218786610021,17.6185409599022,20.1745994174597,20.7368819895929,12.3973110466382,13.4486836095542,15.106487746146,20.3803589271008,15.757353080887,14.6686317865738,19.1508580557884,18.6506901846825,11.3703661953433,1.66597625333005,2.11600368298999,1.44932244350839,0,0.679971333707751,0,0.649776417447669,0,2.10666630197628,0,0.259786004602869,0,2.95771181531029,0,0,0,0.432982082022428,0.253359865475099,0.505524445014783,1.82694207550496,0.258937883647172,0.445326417194474,1.04091196059682,1.21786191324856,0.691846491768175,1.3565037649736,1.05829836422134,0.753999547978053,1.23597483867187,0.289198713839823,0.884610551949874,1.13236794963186,0.662524555381181,0.484875253135222,0,7.31951992528868,3.97948742945565,0.510914110417183,0.958520996047362,1.79970819298022,1.39777249780371,18.8736205650077,10.5225138648284,13.0680526197379,14.9488915365358,14.5757810678288,26.5968697036237,20.766881672673,0.916554274652847,0.497627882440372,0.758168275301024,0.841767423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| ||
|EntrezGene=19346 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P35279 | |||
|association_with_transcript=197bp_to_ENSMUST00000098252_5end | |||
|description=CAGE_peak_4_at_Rab6a_5end | |||
|id=chr7:107756401..107756413,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.59e-13!33;CL:0000047!1.59e-13!33;CL:0000031!1.59e-13!33;CL:0000404!1.59e-13!33;CL:0000117!5.27e-13!23;CL:0000337!5.27e-13!23;CL:0000221!2.47e-11!44;CL:0000133!2.47e-11!44;CL:0002319!5.90e-11!43;CL:0000393!2.32e-10!39;CL:0000211!2.32e-10!39;CL:0000055!4.91e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.16e-15,23;CL:0000337,8.16e-15,23;CL:0000540,2.13e-14,33;CL:0000047,2.13e-14,33;CL:0000031,2.13e-14,33;CL:0000404,2.13e-14,33;CL:0000221,1.62e-11,44;CL:0000133,1.62e-11,44;CL:0000393,2.64e-11,39;CL:0000211,2.64e-11,39;CL:0002319,4.48e-11,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.48e-24!75;UBERON:0001016!2.48e-24!75;UBERON:0001017!7.93e-24!73;UBERON:0005743!7.93e-24!73;UBERON:0004121!7.85e-22!102;UBERON:0000924!7.85e-22!102;UBERON:0006601!7.85e-22!102;UBERON:0002346!1.48e-20!71;UBERON:0003075!1.48e-20!71;UBERON:0007284!1.48e-20!71;UBERON:0001049!1.45e-19!52;UBERON:0005068!1.45e-19!52;UBERON:0006241!1.45e-19!52;UBERON:0007135!1.45e-19!52;UBERON:0000033!3.99e-19!63;UBERON:0000955!4.12e-18!50;UBERON:0006238!4.12e-18!50;UBERON:0002616!1.29e-17!49;UBERON:0002020!2.36e-17!34;UBERON:0003056!1.61e-16!49;UBERON:0003080!6.68e-15!40;UBERON:0002780!2.89e-14!39;UBERON:0001890!2.89e-14!39;UBERON:0006240!2.89e-14!39;UBERON:0002791!4.50e-14!29;UBERON:0003528!4.50e-14!29;UBERON:0001893!4.50e-14!29;UBERON:0000956!1.81e-09!21;UBERON:0001869!1.81e-09!21;UBERON:0000203!1.81e-09!21;UBERON:0007811!2.19e-08!86;UBERON:0002619!9.49e-08!17;UBERON:0000153!1.77e-07!94;UBERON:0002021!6.55e-07!10;UBERON:0000411!6.55e-07!10;UBERON:0001950!6.55e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.68e-26,75;UBERON:0001017,3.14e-25,73;UBERON:0004121,1.66e-23,95;UBERON:0000924,1.66e-23,95;UBERON:0006601,1.66e-23,95;UBERON:0000073,3.29e-22,54;UBERON:0002346,3.62e-22,64;UBERON:0003075,3.62e-22,64;UBERON:0007284,3.62e-22,64;UBERON:0001049,1.36e-20,52;UBERON:0005068,1.36e-20,52;UBERON:0006241,1.36e-20,52;UBERON:0007135,1.36e-20,52;UBERON:0010371,5.54e-19,73;UBERON:0002020,9.84e-19,34;UBERON:0000955,1.33e-16,47;UBERON:0006238,1.33e-16,47;UBERON:0003056,1.55e-16,49;UBERON:0002616,4.93e-16,46;UBERON:0003080,5.48e-15,40;UBERON:0003528,8.01e-15,29;UBERON:0002791,8.01e-15,29;UBERON:0001893,8.01e-15,29;UBERON:0002780,2.99e-14,39;UBERON:0001890,2.99e-14,39;UBERON:0006240,2.99e-14,39;UBERON:0010314,4.10e-14,92;UBERON:0000956,2.25e-09,21;UBERON:0001869,2.25e-09,21;UBERON:0000203,2.25e-09,21;UBERON:0002021,4.22e-08,10;UBERON:0000411,4.22e-08,10;UBERON:0001950,4.22e-08,10;UBERON:0002619,2.47e-07,17;UBERON:0002420,5.53e-07,8;UBERON:0007245,5.53e-07,8;UBERON:0010009,5.53e-07,8;UBERON:0010011,5.53e-07,8;UBERON:0000454,5.53e-07,8 | |||
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| |||
|short_description=p4@Rab6a | |||
}} |
Revision as of 11:16, 14 September 2013
Short description: | p4@Rab6a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rab6a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 197bp_to_ENSMUST00000098252_5end |
EntrezGene: | Rab6a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.16e-15 | 23 |
neuroblast (sensu Vertebrata) | 8.16e-15 | 23 |
neuron | 2.13e-14 | 33 |
neuronal stem cell | 2.13e-14 | 33 |
neuroblast | 2.13e-14 | 33 |
electrically signaling cell | 2.13e-14 | 33 |
ectodermal cell | 1.62e-11 | 44 |
neurectodermal cell | 1.62e-11 | 44 |
electrically responsive cell | 2.64e-11 | 39 |
electrically active cell | 2.64e-11 | 39 |
neural cell | 4.48e-11 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.