FFCP PHASE1:Mm9::chr2:70401430..70401490,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14415|HGNC=|MCL_coexpression_id=1|UniProt=D3Z5S3|association_with_transcript=-8bp_to_ENSMUST00000123330_5end|description=CAGE_peak_3_at_Gad1_5end|id=chr2:70401430..70401490,+|ontology_enrichment_celltype=CL:0000117!7.45e-20!23;CL:0000337!7.45e-20!23;CL:0000540!2.90e-12!33;CL:0000047!2.90e-12!33;CL:0000031!2.90e-12!33;CL:0000404!2.90e-12!33;CL:0000221!2.06e-10!44;CL:0000133!2.06e-10!44;CL:0002319!7.71e-10!43;CL:0000393!3.86e-09!39;CL:0000211!3.86e-09!39;CL:0000055!2.62e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.34e-24,23;CL:0000337,1.34e-24,23;CL:0000540,1.93e-15,33;CL:0000047,1.93e-15,33;CL:0000031,1.93e-15,33;CL:0000404,1.93e-15,33;CL:0000393,3.13e-12,39;CL:0000211,3.13e-12,39;CL:0000221,2.07e-11,44;CL:0000133,2.07e-11,44;CL:0002319,1.33e-10,43;CL:0002610,7.69e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.15e-28!73;UBERON:0005743!2.15e-28!73;UBERON:0000033!2.20e-28!63;UBERON:0001049!5.16e-28!52;UBERON:0005068!5.16e-28!52;UBERON:0006241!5.16e-28!52;UBERON:0007135!5.16e-28!52;UBERON:0000073!4.06e-27!75;UBERON:0001016!4.06e-27!75;UBERON:0000955!5.83e-27!50;UBERON:0006238!5.83e-27!50;UBERON:0002020!1.06e-26!34;UBERON:0002616!7.32e-26!49;UBERON:0002346!4.62e-24!71;UBERON:0003075!4.62e-24!71;UBERON:0007284!4.62e-24!71;UBERON:0004121!1.41e-22!102;UBERON:0000924!1.41e-22!102;UBERON:0006601!1.41e-22!102;UBERON:0002791!2.49e-22!29;UBERON:0003528!2.49e-22!29;UBERON:0001893!2.49e-22!29;UBERON:0003056!6.75e-22!49;UBERON:0003080!2.66e-20!40;UBERON:0002780!2.69e-19!39;UBERON:0001890!2.69e-19!39;UBERON:0006240!2.69e-19!39;UBERON:0007811!3.98e-16!86;UBERON:0000956!6.43e-15!21;UBERON:0001869!6.43e-15!21;UBERON:0000203!6.43e-15!21;UBERON:0000153!2.33e-13!94;UBERON:0002619!1.33e-12!17;UBERON:0002021!8.49e-10!10;UBERON:0000411!8.49e-10!10;UBERON:0001950!8.49e-10!10;UBERON:0002420!1.18e-08!8;UBERON:0007245!1.18e-08!8;UBERON:0010009!1.18e-08!8;UBERON:0010011!1.18e-08!8;UBERON:0000454!1.18e-08!8;UBERON:0003076!3.63e-08!12;UBERON:0003057!3.63e-08!12;UBERON:0002298!1.47e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.32e-40,54;UBERON:0002346,4.11e-37,64;UBERON:0003075,4.11e-37,64;UBERON:0007284,4.11e-37,64;UBERON:0001049,4.61e-37,52;UBERON:0005068,4.61e-37,52;UBERON:0006241,4.61e-37,52;UBERON:0007135,4.61e-37,52;UBERON:0001017,6.01e-37,73;UBERON:0001016,1.18e-35,75;UBERON:0004121,1.32e-34,95;UBERON:0000924,1.32e-34,95;UBERON:0006601,1.32e-34,95;UBERON:0002020,2.13e-34,34;UBERON:0010371,6.94e-33,73;UBERON:0000955,2.09e-30,47;UBERON:0006238,2.09e-30,47;UBERON:0002616,8.51e-29,46;UBERON:0003528,1.54e-27,29;UBERON:0002791,1.54e-27,29;UBERON:0001893,1.54e-27,29;UBERON:0003056,8.75e-27,49;UBERON:0003080,1.70e-24,40;UBERON:0010314,8.64e-24,92;UBERON:0002780,5.34e-23,39;UBERON:0001890,5.34e-23,39;UBERON:0006240,5.34e-23,39;UBERON:0002619,4.19e-18,17;UBERON:0000956,3.30e-16,21;UBERON:0001869,3.30e-16,21;UBERON:0000203,3.30e-16,21;UBERON:0002021,6.49e-15,10;UBERON:0000411,6.49e-15,10;UBERON:0001950,6.49e-15,10;UBERON:0002420,4.62e-13,8;UBERON:0007245,4.62e-13,8;UBERON:0010009,4.62e-13,8;UBERON:0010011,4.62e-13,8;UBERON:0000454,4.62e-13,8;UBERON:0003076,6.24e-13,12;UBERON:0003057,6.24e-13,12;UBERON:0000025,1.76e-11,114;UBERON:0004111,6.92e-11,122;UBERON:0002240,1.28e-09,6;UBERON:0005174,1.28e-09,6;UBERON:0001137,1.28e-09,6;UBERON:0000369,2.70e-08,5;UBERON:0002435,2.70e-08,5;UBERON:0000204,2.70e-08,5;UBERON:0010082,2.70e-08,5;UBERON:0002950,4.90e-08,4;UBERON:0001891,4.90e-08,4;UBERON:0009616,4.90e-08,4;UBERON:0010286,4.90e-08,4;UBERON:0001948,5.36e-08,5;UBERON:0002315,5.36e-08,5;UBERON:0000483,1.79e-07,174;UBERON:0011216,1.91e-07,194;UBERON:0000119,2.86e-07,176;UBERON:0004684,7.69e-07,3;UBERON:0002275,7.69e-07,3|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23164502574065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,5.46254444320914,6.87688273053643,4.43681982454325,0,0,0,0,0,0.599200221036809,0.384218305321555,0.414758449233911,0.405017814995072,0.841299845405528,7.7125765789027,4.8591079009355,3.1847607795888,3.54628242767475,5.51531271966013,30.8324466798288,24.6436562504412,26.8811433198426,4.87979264601717,3.7509933876988,3.12548022334056,25.4056529091257,10.1297269805702,15.7382195210114,5.89257170947335,4.12877874317399,5.59198337475902,0,0,0,0,0,0,0,0,1.12355536105401,0,0,0,2.81686839553361,0,0,0,0,0,0,0.34255163915718,0,0.29688427812965,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2246014446005,13.4045892360611,0,0,0,0,20.3715269590559,31.5675415944852,11.3088916901578,11.9938780932671,6.13717097592793,23.4800490352303,17.5220564113178,0.407357455401265,0,0,1.89397670297827,0,0,0,0.30140963567143,1.29269348387523,2.17793324484245,1.96773621575431,3.88055056108524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.9350773253346,2.6755199218614,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.2293743384618,17.3473296156461,0,0,0,0,0,0,0,0,0,0,0,26.0270266301664,0,0,0,0,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0,0.258717367565509,0.214337035031592,0,0,0,0,0,0,0,0,0,0,0,0,0,17.8008289930089,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.51801474093653,5.52390283808612,6.30185064783336,8.76451229952807,6.85082519770642,9.06472676867641,2.70009000092722,11.2580300806055,5.43770890781046,7.7664046762773,0.103787347584177,0.399024873401031,0.341467211508268,0.243106717068294,0.628839487883947,0.551530525350042,1.33348036680969,0,0.962757628775446,1.51618327058278,0.760437899670719,0.943131706930381,0.37456602987953,0.512201219238954,0.402048282689293,0.476293691283074,0.695305955669133,0.578727661391115,0,0.588795680537589,0.342869252385415,0.70990322463735,0.238436189947321,0.872078499793971,0.376437521661322,0.846146078916765,0.182927972872773,0.789209134313529,0.271608227691724,0.561142271657738,0.830445126869219,0.29551344712669,0,0.309873682371932,0.771626443924566,0.499621155875892,1.40358965067245,1.07435527024149,0,0.220591419119515,0|short_description=p3@Gad1}} | ||
|EntrezGene=14415 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=D3Z5S3 | |||
|association_with_transcript=-8bp_to_ENSMUST00000123330_5end | |||
|description=CAGE_peak_3_at_Gad1_5end | |||
|id=chr2:70401430..70401490,+ | |||
|ontology_enrichment_celltype=CL:0000117!7.45e-20!23;CL:0000337!7.45e-20!23;CL:0000540!2.90e-12!33;CL:0000047!2.90e-12!33;CL:0000031!2.90e-12!33;CL:0000404!2.90e-12!33;CL:0000221!2.06e-10!44;CL:0000133!2.06e-10!44;CL:0002319!7.71e-10!43;CL:0000393!3.86e-09!39;CL:0000211!3.86e-09!39;CL:0000055!2.62e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.34e-24,23;CL:0000337,1.34e-24,23;CL:0000540,1.93e-15,33;CL:0000047,1.93e-15,33;CL:0000031,1.93e-15,33;CL:0000404,1.93e-15,33;CL:0000393,3.13e-12,39;CL:0000211,3.13e-12,39;CL:0000221,2.07e-11,44;CL:0000133,2.07e-11,44;CL:0002319,1.33e-10,43;CL:0002610,7.69e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.15e-28!73;UBERON:0005743!2.15e-28!73;UBERON:0000033!2.20e-28!63;UBERON:0001049!5.16e-28!52;UBERON:0005068!5.16e-28!52;UBERON:0006241!5.16e-28!52;UBERON:0007135!5.16e-28!52;UBERON:0000073!4.06e-27!75;UBERON:0001016!4.06e-27!75;UBERON:0000955!5.83e-27!50;UBERON:0006238!5.83e-27!50;UBERON:0002020!1.06e-26!34;UBERON:0002616!7.32e-26!49;UBERON:0002346!4.62e-24!71;UBERON:0003075!4.62e-24!71;UBERON:0007284!4.62e-24!71;UBERON:0004121!1.41e-22!102;UBERON:0000924!1.41e-22!102;UBERON:0006601!1.41e-22!102;UBERON:0002791!2.49e-22!29;UBERON:0003528!2.49e-22!29;UBERON:0001893!2.49e-22!29;UBERON:0003056!6.75e-22!49;UBERON:0003080!2.66e-20!40;UBERON:0002780!2.69e-19!39;UBERON:0001890!2.69e-19!39;UBERON:0006240!2.69e-19!39;UBERON:0007811!3.98e-16!86;UBERON:0000956!6.43e-15!21;UBERON:0001869!6.43e-15!21;UBERON:0000203!6.43e-15!21;UBERON:0000153!2.33e-13!94;UBERON:0002619!1.33e-12!17;UBERON:0002021!8.49e-10!10;UBERON:0000411!8.49e-10!10;UBERON:0001950!8.49e-10!10;UBERON:0002420!1.18e-08!8;UBERON:0007245!1.18e-08!8;UBERON:0010009!1.18e-08!8;UBERON:0010011!1.18e-08!8;UBERON:0000454!1.18e-08!8;UBERON:0003076!3.63e-08!12;UBERON:0003057!3.63e-08!12;UBERON:0002298!1.47e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.32e-40,54;UBERON:0002346,4.11e-37,64;UBERON:0003075,4.11e-37,64;UBERON:0007284,4.11e-37,64;UBERON:0001049,4.61e-37,52;UBERON:0005068,4.61e-37,52;UBERON:0006241,4.61e-37,52;UBERON:0007135,4.61e-37,52;UBERON:0001017,6.01e-37,73;UBERON:0001016,1.18e-35,75;UBERON:0004121,1.32e-34,95;UBERON:0000924,1.32e-34,95;UBERON:0006601,1.32e-34,95;UBERON:0002020,2.13e-34,34;UBERON:0010371,6.94e-33,73;UBERON:0000955,2.09e-30,47;UBERON:0006238,2.09e-30,47;UBERON:0002616,8.51e-29,46;UBERON:0003528,1.54e-27,29;UBERON:0002791,1.54e-27,29;UBERON:0001893,1.54e-27,29;UBERON:0003056,8.75e-27,49;UBERON:0003080,1.70e-24,40;UBERON:0010314,8.64e-24,92;UBERON:0002780,5.34e-23,39;UBERON:0001890,5.34e-23,39;UBERON:0006240,5.34e-23,39;UBERON:0002619,4.19e-18,17;UBERON:0000956,3.30e-16,21;UBERON:0001869,3.30e-16,21;UBERON:0000203,3.30e-16,21;UBERON:0002021,6.49e-15,10;UBERON:0000411,6.49e-15,10;UBERON:0001950,6.49e-15,10;UBERON:0002420,4.62e-13,8;UBERON:0007245,4.62e-13,8;UBERON:0010009,4.62e-13,8;UBERON:0010011,4.62e-13,8;UBERON:0000454,4.62e-13,8;UBERON:0003076,6.24e-13,12;UBERON:0003057,6.24e-13,12;UBERON:0000025,1.76e-11,114;UBERON:0004111,6.92e-11,122;UBERON:0002240,1.28e-09,6;UBERON:0005174,1.28e-09,6;UBERON:0001137,1.28e-09,6;UBERON:0000369,2.70e-08,5;UBERON:0002435,2.70e-08,5;UBERON:0000204,2.70e-08,5;UBERON:0010082,2.70e-08,5;UBERON:0002950,4.90e-08,4;UBERON:0001891,4.90e-08,4;UBERON:0009616,4.90e-08,4;UBERON:0010286,4.90e-08,4;UBERON:0001948,5.36e-08,5;UBERON:0002315,5.36e-08,5;UBERON:0000483,1.79e-07,174;UBERON:0011216,1.91e-07,194;UBERON:0000119,2.86e-07,176;UBERON:0004684,7.69e-07,3;UBERON:0002275,7.69e-07,3 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23164502574065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,5.46254444320914,6.87688273053643,4.43681982454325,0,0,0,0,0,0.599200221036809,0.384218305321555,0.414758449233911,0.405017814995072,0.841299845405528,7.7125765789027,4.8591079009355,3.1847607795888,3.54628242767475,5.51531271966013,30.8324466798288,24.6436562504412,26.8811433198426,4.87979264601717,3.7509933876988,3.12548022334056,25.4056529091257,10.1297269805702,15.7382195210114,5.89257170947335,4.12877874317399,5.59198337475902,0,0,0,0,0,0,0,0,1.12355536105401,0,0,0,2.81686839553361,0,0,0,0,0,0,0.34255163915718,0,0.29688427812965,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2246014446005,13.4045892360611,0,0,0,0,20.3715269590559,31.5675415944852,11.3088916901578,11.9938780932671,6.13717097592793,23.4800490352303,17.5220564113178,0.407357455401265,0,0,1.89397670297827,0,0,0,0.30140963567143,1.29269348387523,2.17793324484245,1.96773621575431,3.88055056108524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.9350773253346,2.6755199218614,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.2293743384618,17.3473296156461,0,0,0,0,0,0,0,0,0,0,0,26.0270266301664,0,0,0,0,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0,0.258717367565509,0.214337035031592,0,0,0,0,0,0,0,0,0,0,0,0,0,17.8008289930089,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.51801474093653,5.52390283808612,6.30185064783336,8.76451229952807,6.85082519770642,9.06472676867641,2.70009000092722,11.2580300806055,5.43770890781046,7.7664046762773,0.103787347584177,0.399024873401031,0.341467211508268,0.243106717068294,0.628839487883947,0.551530525350042,1.33348036680969,0,0.962757628775446,1.51618327058278,0.760437899670719,0.943131706930381,0.37456602987953,0.512201219238954,0.402048282689293,0.476293691283074,0.695305955669133,0.578727661391115,0,0.588795680537589,0.342869252385415,0.70990322463735,0.238436189947321,0.872078499793971,0.376437521661322,0.846146078916765,0.182927972872773,0.789209134313529,0.271608227691724,0.561142271657738,0.830445126869219,0.29551344712669,0,0.309873682371932,0.771626443924566,0.499621155875892,1.40358965067245,1.07435527024149,0,0.220591419119515,0 | |||
|short_description=p3@Gad1 | |||
}} |
Revision as of 00:25, 14 September 2013
Short description: | p3@Gad1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gad1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -8bp_to_ENSMUST00000123330_5end |
EntrezGene: | Gad1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.34e-24 | 23 |
neuroblast (sensu Vertebrata) | 1.34e-24 | 23 |
neuron | 1.93e-15 | 33 |
neuronal stem cell | 1.93e-15 | 33 |
neuroblast | 1.93e-15 | 33 |
electrically signaling cell | 1.93e-15 | 33 |
electrically responsive cell | 3.13e-12 | 39 |
electrically active cell | 3.13e-12 | 39 |
ectodermal cell | 2.07e-11 | 44 |
neurectodermal cell | 2.07e-11 | 44 |
neural cell | 1.33e-10 | 43 |
raphe nuclei neuron | 7.69e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.