FFCP PHASE1:Hg19::chr11:1411252..1411304,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9024|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11405|TSSclassifier=S|UniProt=|association_with_transcript=121bp_to_ENST00000308230,ENST00000528841,ENST00000529433,ENST00000531197_5end|coexpression_cluster_id=C2114|description=CAGE_peak_2_at_BRSK2_5end|id=chr11:1411252..1411304,+|ontology_enrichment_celltype=CL:0000047!9.58e-09!8;CL:0002319!4.99e-08!25;CL:0000540!2.97e-07!6;CL:0000031!2.97e-07!6;CL:0000404!2.97e-07!6|ontology_enrichment_celltype_v019=CL:0000540;6.23e-11;6!CL:0000404;6.23e-11;6!CL:0002319;1.28e-09;25!CL:0002322;3.40e-08;5|ontology_enrichment_celltype_v019_2=CL:0000540,5.57e-11,6;CL:0000031,5.57e-11,6;CL:0000404,5.57e-11,6;CL:0000047,6.95e-11,8;CL:0002319,1.17e-09,25;CL:0002322,3.16e-08,5;CL:0000133,5.60e-07,59|ontology_enrichment_development_v019=UBERON:0006601;4.67e-20;82!CL:0000031;6.23e-11;6!UBERON:0006238;6.65e-09;10!UBERON:0006215;6.23e-07;3|ontology_enrichment_disease=DOID:0050687!1.01e-09!143;DOID:305!2.43e-08!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.07e-52!94;UBERON:0001016!2.07e-52!94;UBERON:0005743!8.58e-52!86;UBERON:0001017!5.45e-51!82;UBERON:0001049!1.04e-41!57;UBERON:0005068!1.04e-41!57;UBERON:0006241!1.04e-41!57;UBERON:0007135!1.04e-41!57;UBERON:0000955!1.47e-39!69;UBERON:0006238!1.47e-39!69;UBERON:0002346!3.28e-34!90;UBERON:0002616!4.74e-34!59;UBERON:0002780!6.18e-34!41;UBERON:0001890!6.18e-34!41;UBERON:0006240!6.18e-34!41;UBERON:0003075!5.91e-33!86;UBERON:0007284!5.91e-33!86;UBERON:0003080!9.54e-33!42;UBERON:0001893!5.88e-28!34;UBERON:0002020!9.89e-28!34;UBERON:0003528!9.89e-28!34;UBERON:0002791!6.04e-27!33;UBERON:0001869!2.06e-26!32;UBERON:0000924!2.27e-25!173;UBERON:0006601!2.27e-25!173;UBERON:0003056!6.61e-25!61;UBERON:0004121!3.80e-24!169;UBERON:0002619!4.62e-23!22;UBERON:0001950!1.83e-21!20;UBERON:0000956!1.22e-20!25;UBERON:0000203!1.22e-20!25;UBERON:0007023!2.03e-20!115;UBERON:0000033!7.26e-19!123;UBERON:0000153!1.29e-17!129;UBERON:0007811!1.29e-17!129;UBERON:0000025!4.65e-10!194;UBERON:0003076!5.71e-10!15;UBERON:0003057!5.71e-10!15;UBERON:0000922!2.25e-09!612;UBERON:0001871!1.24e-08!7;UBERON:0002308!1.66e-08!9;UBERON:0000125!1.66e-08!9;UBERON:0002420!1.69e-08!9;UBERON:0007245!1.69e-08!9;UBERON:0010009!1.69e-08!9;UBERON:0010011!1.69e-08!9;UBERON:0000454!1.69e-08!9;UBERON:0004732!1.70e-08!13;UBERON:0000064!3.11e-08!219;UBERON:0004733!1.41e-07!12;UBERON:0002028!1.41e-07!12;UBERON:0007277!1.41e-07!12;UBERON:0000062!1.41e-07!511;UBERON:0000200!2.13e-07!6;UBERON:0001894!2.41e-07!7;UBERON:0006222!2.41e-07!7;UBERON:0000923!3.60e-07!604;UBERON:0005291!3.60e-07!604;UBERON:0006598!3.60e-07!604;UBERON:0002532!3.60e-07!604;UBERON:0002050!4.37e-07!605;UBERON:0005423!4.37e-07!605;UBERON:0009663!6.19e-07!7;UBERON:0000483!7.52e-07!309;UBERON:0000468!7.63e-07!659|ontology_enrichment_uberon_v019=UBERON:0002780;1.92e-38;41!UBERON:0001890;1.92e-38;41!UBERON:0001893;3.43e-37;34!UBERON:0001869;4.03e-37;32!UBERON:0002619;4.33e-37;22!UBERON:0003528;5.29e-37;34!UBERON:0002020;5.29e-37;34!UBERON:0002791;9.53e-37;32!UBERON:0000073;2.20e-35;53!UBERON:0002616;2.20e-35;53!UBERON:0001950;1.61e-34;20!UBERON:0000956;6.52e-32;25!UBERON:0000203;6.52e-32;25!UBERON:0000955;2.79e-29;68!UBERON:0001017;1.81e-27;75!UBERON:0001016;3.34e-26;83!UBERON:0000125;4.14e-13;9!UBERON:0002308;4.14e-13;9!UBERON:0002420;4.96e-13;9!UBERON:0007245;4.96e-13;9!UBERON:0010009;4.96e-13;9!UBERON:0010011;4.96e-13;9!UBERON:0000454;4.96e-13;9!UBERON:0004732;4.55e-12;13!UBERON:0001871;8.76e-12;6!UBERON:0000200;3.55e-11;6!UBERON:0001894;4.51e-11;7!UBERON:0011216;6.64e-11;132!UBERON:0004733;1.35e-10;12!UBERON:0002028;1.35e-10;12!UBERON:0009663;1.72e-10;7!UBERON:0007023;2.88e-10;114!UBERON:0002021;7.69e-10;5!UBERON:0001872;1.13e-09;5!UBERON:0002298;1.27e-09;6!UBERON:0000349;2.82e-08;5!UBERON:0000922;4.29e-08;49!UBERON:0002784;1.64e-07;4!UBERON:0003296;3.69e-07;4!UBERON:0010133;3.69e-07;4!UBERON:0002680;4.81e-07;9!UBERON:0001895;4.81e-07;9!UBERON:0000369;5.31e-07;4!UBERON:0002435;5.31e-07;4!UBERON:0000204;5.31e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.01e-80,89;UBERON:0001017,7.76e-80,81;UBERON:0001049,9.49e-68,56;UBERON:0005068,9.49e-68,56;UBERON:0006241,9.49e-68,56;UBERON:0007135,9.49e-68,56;UBERON:0000955,9.98e-65,68;UBERON:0006238,9.98e-65,68;UBERON:0000073,2.40e-63,53;UBERON:0002616,2.40e-63,53;UBERON:0002780,4.65e-54,41;UBERON:0001890,4.65e-54,41;UBERON:0003080,4.65e-54,41;UBERON:0006240,4.65e-54,41;UBERON:0002346,3.71e-50,86;UBERON:0003075,1.98e-49,82;UBERON:0007284,1.98e-49,82;UBERON:0001893,3.94e-44,34;UBERON:0003528,9.27e-44,34;UBERON:0002020,9.27e-44,34;UBERON:0001869,1.46e-41,32;UBERON:0004121,1.73e-41,171;UBERON:0000924,1.73e-41,171;UBERON:0006601,1.73e-41,171;UBERON:0002791,4.58e-41,32;UBERON:0003056,9.48e-41,61;UBERON:0010371,4.09e-39,104;UBERON:0002619,3.51e-37,22;UBERON:0001950,1.60e-34,20;UBERON:0000956,5.44e-32,25;UBERON:0000203,5.44e-32,25;UBERON:0011216,1.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9024 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11405 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=121bp_to_ENST00000308230,ENST00000528841,ENST00000529433,ENST00000531197_5end | |||
|coexpression_cluster_id=C2114 | |||
|description=CAGE_peak_2_at_BRSK2_5end | |||
|id=chr11:1411252..1411304,+ | |||
|ontology_enrichment_celltype=CL:0000047!9.58e-09!8;CL:0002319!4.99e-08!25;CL:0000540!2.97e-07!6;CL:0000031!2.97e-07!6;CL:0000404!2.97e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000540;6.23e-11;6!CL:0000404;6.23e-11;6!CL:0002319;1.28e-09;25!CL:0002322;3.40e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.57e-11,6;CL:0000031,5.57e-11,6;CL:0000404,5.57e-11,6;CL:0000047,6.95e-11,8;CL:0002319,1.17e-09,25;CL:0002322,3.16e-08,5;CL:0000133,5.60e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.67e-20;82!CL:0000031;6.23e-11;6!UBERON:0006238;6.65e-09;10!UBERON:0006215;6.23e-07;3 | |||
|ontology_enrichment_disease=DOID:0050687!1.01e-09!143;DOID:305!2.43e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.07e-52!94;UBERON:0001016!2.07e-52!94;UBERON:0005743!8.58e-52!86;UBERON:0001017!5.45e-51!82;UBERON:0001049!1.04e-41!57;UBERON:0005068!1.04e-41!57;UBERON:0006241!1.04e-41!57;UBERON:0007135!1.04e-41!57;UBERON:0000955!1.47e-39!69;UBERON:0006238!1.47e-39!69;UBERON:0002346!3.28e-34!90;UBERON:0002616!4.74e-34!59;UBERON:0002780!6.18e-34!41;UBERON:0001890!6.18e-34!41;UBERON:0006240!6.18e-34!41;UBERON:0003075!5.91e-33!86;UBERON:0007284!5.91e-33!86;UBERON:0003080!9.54e-33!42;UBERON:0001893!5.88e-28!34;UBERON:0002020!9.89e-28!34;UBERON:0003528!9.89e-28!34;UBERON:0002791!6.04e-27!33;UBERON:0001869!2.06e-26!32;UBERON:0000924!2.27e-25!173;UBERON:0006601!2.27e-25!173;UBERON:0003056!6.61e-25!61;UBERON:0004121!3.80e-24!169;UBERON:0002619!4.62e-23!22;UBERON:0001950!1.83e-21!20;UBERON:0000956!1.22e-20!25;UBERON:0000203!1.22e-20!25;UBERON:0007023!2.03e-20!115;UBERON:0000033!7.26e-19!123;UBERON:0000153!1.29e-17!129;UBERON:0007811!1.29e-17!129;UBERON:0000025!4.65e-10!194;UBERON:0003076!5.71e-10!15;UBERON:0003057!5.71e-10!15;UBERON:0000922!2.25e-09!612;UBERON:0001871!1.24e-08!7;UBERON:0002308!1.66e-08!9;UBERON:0000125!1.66e-08!9;UBERON:0002420!1.69e-08!9;UBERON:0007245!1.69e-08!9;UBERON:0010009!1.69e-08!9;UBERON:0010011!1.69e-08!9;UBERON:0000454!1.69e-08!9;UBERON:0004732!1.70e-08!13;UBERON:0000064!3.11e-08!219;UBERON:0004733!1.41e-07!12;UBERON:0002028!1.41e-07!12;UBERON:0007277!1.41e-07!12;UBERON:0000062!1.41e-07!511;UBERON:0000200!2.13e-07!6;UBERON:0001894!2.41e-07!7;UBERON:0006222!2.41e-07!7;UBERON:0000923!3.60e-07!604;UBERON:0005291!3.60e-07!604;UBERON:0006598!3.60e-07!604;UBERON:0002532!3.60e-07!604;UBERON:0002050!4.37e-07!605;UBERON:0005423!4.37e-07!605;UBERON:0009663!6.19e-07!7;UBERON:0000483!7.52e-07!309;UBERON:0000468!7.63e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.92e-38;41!UBERON:0001890;1.92e-38;41!UBERON:0001893;3.43e-37;34!UBERON:0001869;4.03e-37;32!UBERON:0002619;4.33e-37;22!UBERON:0003528;5.29e-37;34!UBERON:0002020;5.29e-37;34!UBERON:0002791;9.53e-37;32!UBERON:0000073;2.20e-35;53!UBERON:0002616;2.20e-35;53!UBERON:0001950;1.61e-34;20!UBERON:0000956;6.52e-32;25!UBERON:0000203;6.52e-32;25!UBERON:0000955;2.79e-29;68!UBERON:0001017;1.81e-27;75!UBERON:0001016;3.34e-26;83!UBERON:0000125;4.14e-13;9!UBERON:0002308;4.14e-13;9!UBERON:0002420;4.96e-13;9!UBERON:0007245;4.96e-13;9!UBERON:0010009;4.96e-13;9!UBERON:0010011;4.96e-13;9!UBERON:0000454;4.96e-13;9!UBERON:0004732;4.55e-12;13!UBERON:0001871;8.76e-12;6!UBERON:0000200;3.55e-11;6!UBERON:0001894;4.51e-11;7!UBERON:0011216;6.64e-11;132!UBERON:0004733;1.35e-10;12!UBERON:0002028;1.35e-10;12!UBERON:0009663;1.72e-10;7!UBERON:0007023;2.88e-10;114!UBERON:0002021;7.69e-10;5!UBERON:0001872;1.13e-09;5!UBERON:0002298;1.27e-09;6!UBERON:0000349;2.82e-08;5!UBERON:0000922;4.29e-08;49!UBERON:0002784;1.64e-07;4!UBERON:0003296;3.69e-07;4!UBERON:0010133;3.69e-07;4!UBERON:0002680;4.81e-07;9!UBERON:0001895;4.81e-07;9!UBERON:0000369;5.31e-07;4!UBERON:0002435;5.31e-07;4!UBERON:0000204;5.31e-07;4 | |||
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| |||
|short_description=p2@BRSK2 | |||
}} |
Revision as of 16:49, 10 September 2013
Short description: | p2@BRSK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_BRSK2_5end |
Coexpression cluster: | C2114_neuroblastoma_parietal_occipital_Neurons_brain_medial_amygdala |
Association with transcript: | 121bp_to_ENST00000308230, ENST00000528841, ENST00000529433, ENST00000531197_5end |
EntrezGene: | BRSK2 |
HGNC: | 11405 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.57e-11 | 6 |
neuroblast | 5.57e-11 | 6 |
electrically signaling cell | 5.57e-11 | 6 |
neuronal stem cell | 6.95e-11 | 8 |
neural cell | 1.17e-09 | 25 |
embryonic stem cell | 3.16e-08 | 5 |
neurectodermal cell | 5.60e-07 | 59 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.