FFCP PHASE1:Hg19::chr11:64110226..64110239,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=283234|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26757|TSSclassifier=S|UniProt=A6NC98|association_with_transcript=23bp_to_ENST00000494566,uc001nzz.1_5end|coexpression_cluster_id=C11|description=CAGE_peak_5_at_CCDC88B_5end|id=chr11:64110226..64110239,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000764;1.70e-07;2!CL:0000558;1.70e-07;2|ontology_enrichment_celltype_v019_2=CL:0000764,1.36e-07,2;CL:0000765,1.36e-07,2;CL:0000050,1.36e-07,2;CL:0000038,1.36e-07,2;CL:0000558,1.36e-07,2;CL:0000547,1.36e-07,2;CL:0000549,1.36e-07,2;CL:0000550,1.36e-07,2;CL:0000552,1.36e-07,2|ontology_enrichment_development_v019=UBERON:0006215;4.63e-18;3|ontology_enrichment_disease=DOID:1749!2.28e-09!14;DOID:305!2.85e-07!106;DOID:0050687!3.02e-07!143|ontology_enrichment_disease_v019=DOID:1749;1.55e-08;14|ontology_enrichment_disease_v019_2=DOID:1749,1.84e-08,14|ontology_enrichment_uberon=UBERON:0001049!1.43e-26!57;UBERON:0005068!1.43e-26!57;UBERON:0006241!1.43e-26!57;UBERON:0007135!1.43e-26!57;UBERON:0007023!4.23e-26!115;UBERON:0002616!2.73e-25!59;UBERON:0000955!3.99e-24!69;UBERON:0006238!3.99e-24!69;UBERON:0002346!1.85e-23!90;UBERON:0000033!1.36e-22!123;UBERON:0002780!1.02e-21!41;UBERON:0001890!1.02e-21!41;UBERON:0006240!1.02e-21!41;UBERON:0003075!1.40e-21!86;UBERON:0007284!1.40e-21!86;UBERON:0005743!1.44e-21!86;UBERON:0000073!4.11e-21!94;UBERON:0001016!4.11e-21!94;UBERON:0003080!5.49e-21!42;UBERON:0000153!9.87e-21!129;UBERON:0007811!9.87e-21!129;UBERON:0001017!1.36e-20!82;UBERON:0002020!1.22e-19!34;UBERON:0003528!1.22e-19!34;UBERON:0001893!2.03e-19!34;UBERON:0000924!1.57e-18!173;UBERON:0006601!1.57e-18!173;UBERON:0002791!1.69e-18!33;UBERON:0003056!5.89e-18!61;UBERON:0001869!1.36e-17!32;UBERON:0004121!5.22e-17!169;UBERON:0002619!2.28e-14!22;UBERON:0001950!5.37e-14!20;UBERON:0000956!4.09e-12!25;UBERON:0000203!4.09e-12!25;UBERON:0002420!9.11e-10!9;UBERON:0007245!9.11e-10!9;UBERON:0010009!9.11e-10!9;UBERON:0010011!9.11e-10!9;UBERON:0000454!9.11e-10!9;UBERON:0002308!1.25e-09!9;UBERON:0000125!1.25e-09!9;UBERON:0002298!2.02e-08!8;UBERON:0009663!1.51e-07!7;UBERON:0004733!3.49e-07!12;UBERON:0002028!3.49e-07!12;UBERON:0007277!3.49e-07!12;UBERON:0000064!3.75e-07!219;UBERON:0003076!8.11e-07!15;UBERON:0003057!8.11e-07!15|ontology_enrichment_uberon_v019=UBERON:0002702;1.27e-25;2!UBERON:0001896;1.94e-17;3!UBERON:0001870;1.94e-17;3!UBERON:0005290;1.94e-17;3!UBERON:0004733;4.80e-17;12!UBERON:0002028;4.80e-17;12!UBERON:0004732;9.30e-16;13!UBERON:0001950;9.13e-15;20!UBERON:0000073;4.37e-14;53!UBERON:0002616;4.37e-14;53!UBERON:0002619;1.76e-13;22!UBERON:0000956;6.37e-12;25!UBERON:0000203;6.37e-12;25!UBERON:0002021;5.16e-11;5!UBERON:0002037;1.68e-09;6!UBERON:0002791;2.77e-09;32!UBERON:0001869;2.77e-09;32!UBERON:0000200;3.41e-09;6!UBERON:0002298;3.41e-09;6!UBERON:0000955;1.02e-08;68!UBERON:0001017;1.42e-08;75!UBERON:0001893;2.98e-08;34!UBERON:0003528;8.24e-08;34!UBERON:0002020;8.24e-08;34!UBERON:0002780;9.46e-08;41!UBERON:0001890;9.46e-08;41!UBERON:0001905;1.05e-07;2!UBERON:0002757;1.05e-07;2!UBERON:0010134;1.05e-07;2!UBERON:0005408;1.05e-07;2!UBERON:0001899;1.05e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002702,1.44e-25,2;UBERON:0000073,5.41e-22,53;UBERON:0002616,5.41e-22,53;UBERON:0001049,8.90e-21,56;UBERON:0005068,8.90e-21,56;UBERON:0006241,8.90e-21,56;UBERON:0007135,8.90e-21,56;UBERON:0001896,1.51e-17,3;UBERON:0005290,1.51e-17,3;UBERON:0010096,1.51e-17,3;UBERON:0001870,2.11e-17,3;UBERON:0004733,4.07e-17,12;UBERON:0002028,4.07e-17,12;UBERON:0007277,4.07e-17,12;UBERON:0000955,1.05e-16,68;UBERON:0006238,1.05e-16,68;UBERON:0004732,7.99e-16,13;UBERON:0001950,8.88e-15,20;UBERON:0001017,6.63e-14,81;UBERON:0003075,6.63e-14,82;UBERON:0007284,6.63e-14,82;UBERON:0003076,9.42e-14,15;UBERON:0003057,9.42e-14,15;UBERON:0002619,1.72e-13,22;UBERON:0002346,3.28e-13,86;UBERON:0001016,1.99e-12,89;UBERON:0000956,6.23e-12,25;UBERON:0000203,6.23e-12,25;UBERON:0002021,4.79e-11,5;UBERON:0010371,9.78e-11,104;UBERON:0002780,2.17e-10,41;UBERON:0001890,2.17e-10,41;UBERON:0003080,2.17e-10,41;UBERON:0006240,2.17e-10,41;UBERON:0007023,7.86e-10,114;UBERON:0002037,1.61e-09,6;UBERON:0006215,1.61e-09,6;UBERON:0002791,2.18e-09,32;UBERON:0001869,2.18e-09,32;UBERON:0002298,3.02e-09,6;UBERON:0000200,3.56e-09,6;UBERON:0003528,7.58e-09,34;UBERON:0002020,7.58e-09,34;UBERON:0001893,7.58e-09,34;UBERON:0010314,3.28e-08,132;UBERON:0001905,1.05e-07,2;UBERON:0002757,1.05e-07,2;UBERON:0010134,1.05e-07,2;UBERON:0005408,1.05e-07,2;UBERON:0001899,1.05e-07,2;UBERON:0004121,2.60e-07,171;UBERON:0000924,2.60e-07,171;UBERON:0006601,2.60e-07,171;UBERON:0003056,6.42e-07,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=283234 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26757 | |||
|TSSclassifier=S | |||
|UniProt=A6NC98 | |||
|association_with_transcript=23bp_to_ENST00000494566,uc001nzz.1_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_5_at_CCDC88B_5end | |||
|id=chr11:64110226..64110239,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000764;1.70e-07;2!CL:0000558;1.70e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,1.36e-07,2;CL:0000765,1.36e-07,2;CL:0000050,1.36e-07,2;CL:0000038,1.36e-07,2;CL:0000558,1.36e-07,2;CL:0000547,1.36e-07,2;CL:0000549,1.36e-07,2;CL:0000550,1.36e-07,2;CL:0000552,1.36e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.63e-18;3 | |||
|ontology_enrichment_disease=DOID:1749!2.28e-09!14;DOID:305!2.85e-07!106;DOID:0050687!3.02e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.55e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.84e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.43e-26!57;UBERON:0005068!1.43e-26!57;UBERON:0006241!1.43e-26!57;UBERON:0007135!1.43e-26!57;UBERON:0007023!4.23e-26!115;UBERON:0002616!2.73e-25!59;UBERON:0000955!3.99e-24!69;UBERON:0006238!3.99e-24!69;UBERON:0002346!1.85e-23!90;UBERON:0000033!1.36e-22!123;UBERON:0002780!1.02e-21!41;UBERON:0001890!1.02e-21!41;UBERON:0006240!1.02e-21!41;UBERON:0003075!1.40e-21!86;UBERON:0007284!1.40e-21!86;UBERON:0005743!1.44e-21!86;UBERON:0000073!4.11e-21!94;UBERON:0001016!4.11e-21!94;UBERON:0003080!5.49e-21!42;UBERON:0000153!9.87e-21!129;UBERON:0007811!9.87e-21!129;UBERON:0001017!1.36e-20!82;UBERON:0002020!1.22e-19!34;UBERON:0003528!1.22e-19!34;UBERON:0001893!2.03e-19!34;UBERON:0000924!1.57e-18!173;UBERON:0006601!1.57e-18!173;UBERON:0002791!1.69e-18!33;UBERON:0003056!5.89e-18!61;UBERON:0001869!1.36e-17!32;UBERON:0004121!5.22e-17!169;UBERON:0002619!2.28e-14!22;UBERON:0001950!5.37e-14!20;UBERON:0000956!4.09e-12!25;UBERON:0000203!4.09e-12!25;UBERON:0002420!9.11e-10!9;UBERON:0007245!9.11e-10!9;UBERON:0010009!9.11e-10!9;UBERON:0010011!9.11e-10!9;UBERON:0000454!9.11e-10!9;UBERON:0002308!1.25e-09!9;UBERON:0000125!1.25e-09!9;UBERON:0002298!2.02e-08!8;UBERON:0009663!1.51e-07!7;UBERON:0004733!3.49e-07!12;UBERON:0002028!3.49e-07!12;UBERON:0007277!3.49e-07!12;UBERON:0000064!3.75e-07!219;UBERON:0003076!8.11e-07!15;UBERON:0003057!8.11e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002702;1.27e-25;2!UBERON:0001896;1.94e-17;3!UBERON:0001870;1.94e-17;3!UBERON:0005290;1.94e-17;3!UBERON:0004733;4.80e-17;12!UBERON:0002028;4.80e-17;12!UBERON:0004732;9.30e-16;13!UBERON:0001950;9.13e-15;20!UBERON:0000073;4.37e-14;53!UBERON:0002616;4.37e-14;53!UBERON:0002619;1.76e-13;22!UBERON:0000956;6.37e-12;25!UBERON:0000203;6.37e-12;25!UBERON:0002021;5.16e-11;5!UBERON:0002037;1.68e-09;6!UBERON:0002791;2.77e-09;32!UBERON:0001869;2.77e-09;32!UBERON:0000200;3.41e-09;6!UBERON:0002298;3.41e-09;6!UBERON:0000955;1.02e-08;68!UBERON:0001017;1.42e-08;75!UBERON:0001893;2.98e-08;34!UBERON:0003528;8.24e-08;34!UBERON:0002020;8.24e-08;34!UBERON:0002780;9.46e-08;41!UBERON:0001890;9.46e-08;41!UBERON:0001905;1.05e-07;2!UBERON:0002757;1.05e-07;2!UBERON:0010134;1.05e-07;2!UBERON:0005408;1.05e-07;2!UBERON:0001899;1.05e-07;2 | |||
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|short_description=p5@CCDC88B | |||
}} |
Revision as of 18:45, 10 September 2013
Short description: | p5@CCDC88B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_CCDC88B_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 23bp_to_ENST00000494566, uc001nzz.1_5end |
EntrezGene: | CCDC88B |
HGNC: | 26757 |
UniProt: | A6NC98 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 1.36e-07 | 2 |
erythroblast | 1.36e-07 | 2 |
megakaryocyte-erythroid progenitor cell | 1.36e-07 | 2 |
erythroid progenitor cell | 1.36e-07 | 2 |
reticulocyte | 1.36e-07 | 2 |
proerythroblast | 1.36e-07 | 2 |
basophilic erythroblast | 1.36e-07 | 2 |
polychromatophilic erythroblast | 1.36e-07 | 2 |
orthochromatic erythroblast | 1.36e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.84e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.