FFCP PHASE1:Mm9::chr5:24414378..24414401,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=108099|HGNC=|MCL_coexpression_id=966|UniProt=D3YUS1,Q8BIQ9,Q3TMN8,Q91WG5|association_with_transcript=-51bp_to_ENSMUST00000150135,NM_001170555,NM_001170556,uc008wsk.2,uc008wsn.2,uc012dtj.1_5end|description=CAGE_peak_9_at_Prkag2_5end|id=chr5:24414378..24414401,-|ontology_enrichment_celltype=CL:0000117!1.49e-11!23;CL:0000337!1.49e-11!23;CL:0000540!2.48e-09!33;CL:0000047!2.48e-09!33;CL:0000031!2.48e-09!33;CL:0000404!2.48e-09!33;CL:0002319!1.29e-08!43;CL:0000221!2.56e-08!44;CL:0000133!2.56e-08!44|ontology_enrichment_celltype_v019_2=CL:0000117,7.65e-21,23;CL:0000337,7.65e-21,23;CL:0000540,8.75e-14,33;CL:0000047,8.75e-14,33;CL:0000031,8.75e-14,33;CL:0000404,8.75e-14,33;CL:0002319,2.13e-12,43;CL:0000221,6.15e-12,44;CL:0000133,6.15e-12,44;CL:0000393,1.37e-10,39;CL:0000211,1.37e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.32e-16!73;UBERON:0005743!5.32e-16!73;UBERON:0001049!5.52e-16!52;UBERON:0005068!5.52e-16!52;UBERON:0006241!5.52e-16!52;UBERON:0007135!5.52e-16!52;UBERON:0002020!2.81e-15!34;UBERON:0000073!3.39e-15!75;UBERON:0001016!3.39e-15!75;UBERON:0000955!4.91e-14!50;UBERON:0006238!4.91e-14!50;UBERON:0002616!4.95e-14!49;UBERON:0007811!1.58e-13!86;UBERON:0002791!2.67e-12!29;UBERON:0003528!2.67e-12!29;UBERON:0001893!2.67e-12!29;UBERON:0000153!3.77e-12!94;UBERON:0000033!1.84e-11!63;UBERON:0003080!2.06e-11!40;UBERON:0002346!2.44e-11!71;UBERON:0003075!2.44e-11!71;UBERON:0007284!2.44e-11!71;UBERON:0002780!2.54e-11!39;UBERON:0001890!2.54e-11!39;UBERON:0006240!2.54e-11!39;UBERON:0004121!1.92e-10!102;UBERON:0000924!1.92e-10!102;UBERON:0006601!1.92e-10!102;UBERON:0003056!8.25e-10!49;UBERON:0000956!9.43e-08!21;UBERON:0001869!9.43e-08!21;UBERON:0000203!9.43e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.50e-27,34;UBERON:0000073,2.50e-24,54;UBERON:0001049,1.32e-22,52;UBERON:0005068,1.32e-22,52;UBERON:0006241,1.32e-22,52;UBERON:0007135,1.32e-22,52;UBERON:0003528,1.17e-21,29;UBERON:0002791,1.17e-21,29;UBERON:0001893,1.17e-21,29;UBERON:0001017,6.43e-20,73;UBERON:0001016,4.96e-19,75;UBERON:0002346,1.87e-18,64;UBERON:0003075,1.87e-18,64;UBERON:0007284,1.87e-18,64;UBERON:0002780,5.50e-18,39;UBERON:0001890,5.50e-18,39;UBERON:0006240,5.50e-18,39;UBERON:0003080,2.61e-17,40;UBERON:0002616,1.03e-16,46;UBERON:0010314,3.25e-16,92;UBERON:0000955,3.72e-16,47;UBERON:0006238,3.72e-16,47;UBERON:0010371,1.04e-14,73;UBERON:0003056,1.63e-13,49;UBERON:0004121,4.52e-13,95;UBERON:0000924,4.52e-13,95;UBERON:0006601,4.52e-13,95;UBERON:0000956,4.86e-13,21;UBERON:0001869,4.86e-13,21;UBERON:0000203,4.86e-13,21;UBERON:0002420,2.86e-10,8;UBERON:0007245,2.86e-10,8;UBERON:0010009,2.86e-10,8;UBERON:0010011,2.86e-10,8;UBERON:0000454,2.86e-10,8;UBERON:0002619,2.48e-09,17;UBERON:0000025,3.77e-09,114;UBERON:0004111,6.49e-09,122;UBERON:0002240,6.32e-08,6;UBERON:0005174,6.32e-08,6;UBERON:0001137,6.32e-08,6;UBERON:0000369,7.85e-08,5;UBERON:0002435,7.85e-08,5;UBERON:0000204,7.85e-08,5;UBERON:0010082,7.85e-08,5;UBERON:0001948,5.74e-07,5;UBERON:0002315,5.74e-07,5|phase1_expression=0.80074423552397,0.697950815278722,0.909998478779072,0,0,0.16787927191189,0,1.54947988129892,0.422366166455,0.468129052643987,0.68487187290202,0.638177271962691,0.684802919724823,1.13646523144697,0,0.202475267389826,0,0.946386496074713,0.685572168028694,0,0.425216450755349,0.198581902401771,0,0,0.45881856213434,0,0.430761996159075,0.646413698057667,0.380046838912748,0,0.221730510655305,0.635030673459631,0,15.8481681015439,0,0,0.408338712524738,0.418531630736908,0.7813353445238,0,0,0,0.971020706062307,0,0.101376931219515,0,0.782391344348039,1.74420125104357,1.97717564461025,1.55543919259427,0.55994568650145,0,0.167782606057736,0,1.00828139742739,0,0,0,2.42779753031517,3.70293685490423,0.633831403506179,0,0,0,0,0,0.299600110518405,0.384218305321555,2.28117147078651,2.29510095163874,2.73422449756797,1.42825492201902,2.20868540951614,1.34739879136449,1.82106394934649,0,2.20231761998777,1.53224805702225,1.38245879930619,2.90149833006426,3.11057988248193,2.6045668527838,1.3959149950069,2.8138130501584,1.22238598221448,3.24091444021034,3.27454865837937,2.05039390407831,0.227178579999552,0.226714680320357,0,0,0.679971333707751,0,0,0,0.280888840263504,0.170430322578058,0,0.35333957451034,0.281686839553361,0,0,0,0.216491041011214,1.01343946190039,0,0.45673551887624,0.258937883647172,0.148442139064825,0.173485326766136,0.304465478312141,0,0.301445281105245,0.470354828542819,0.251333182659351,0,0.578397427679647,0,0.161766849947409,0.220841518460394,0,0,0.585561594023094,0.83778682725382,0.510914110417183,0.11981512450592,0.599902730993408,0.381210681219194,0.748953197024114,3.66000482254901,6.40837195775608,1.04294592115366,2.04572365864264,1.0389402227978,1.94689515681309,0.203678727700633,0.124406970610093,0.505445516867349,0.210441855886474,1.17108398666433,0.229902104433473,0.540186389416048,0.150704817835715,0.612328492361951,0.2562274405697,0.655912071918102,0.517406741478031,0.646703978798527,0.3782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| ||
|EntrezGene=108099 | |||
|HGNC= | |||
|MCL_coexpression_id=966 | |||
|UniProt=D3YUS1,Q8BIQ9,Q3TMN8,Q91WG5 | |||
|association_with_transcript=-51bp_to_ENSMUST00000150135,NM_001170555,NM_001170556,uc008wsk.2,uc008wsn.2,uc012dtj.1_5end | |||
|description=CAGE_peak_9_at_Prkag2_5end | |||
|id=chr5:24414378..24414401,- | |||
|ontology_enrichment_celltype=CL:0000117!1.49e-11!23;CL:0000337!1.49e-11!23;CL:0000540!2.48e-09!33;CL:0000047!2.48e-09!33;CL:0000031!2.48e-09!33;CL:0000404!2.48e-09!33;CL:0002319!1.29e-08!43;CL:0000221!2.56e-08!44;CL:0000133!2.56e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.65e-21,23;CL:0000337,7.65e-21,23;CL:0000540,8.75e-14,33;CL:0000047,8.75e-14,33;CL:0000031,8.75e-14,33;CL:0000404,8.75e-14,33;CL:0002319,2.13e-12,43;CL:0000221,6.15e-12,44;CL:0000133,6.15e-12,44;CL:0000393,1.37e-10,39;CL:0000211,1.37e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.32e-16!73;UBERON:0005743!5.32e-16!73;UBERON:0001049!5.52e-16!52;UBERON:0005068!5.52e-16!52;UBERON:0006241!5.52e-16!52;UBERON:0007135!5.52e-16!52;UBERON:0002020!2.81e-15!34;UBERON:0000073!3.39e-15!75;UBERON:0001016!3.39e-15!75;UBERON:0000955!4.91e-14!50;UBERON:0006238!4.91e-14!50;UBERON:0002616!4.95e-14!49;UBERON:0007811!1.58e-13!86;UBERON:0002791!2.67e-12!29;UBERON:0003528!2.67e-12!29;UBERON:0001893!2.67e-12!29;UBERON:0000153!3.77e-12!94;UBERON:0000033!1.84e-11!63;UBERON:0003080!2.06e-11!40;UBERON:0002346!2.44e-11!71;UBERON:0003075!2.44e-11!71;UBERON:0007284!2.44e-11!71;UBERON:0002780!2.54e-11!39;UBERON:0001890!2.54e-11!39;UBERON:0006240!2.54e-11!39;UBERON:0004121!1.92e-10!102;UBERON:0000924!1.92e-10!102;UBERON:0006601!1.92e-10!102;UBERON:0003056!8.25e-10!49;UBERON:0000956!9.43e-08!21;UBERON:0001869!9.43e-08!21;UBERON:0000203!9.43e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.50e-27,34;UBERON:0000073,2.50e-24,54;UBERON:0001049,1.32e-22,52;UBERON:0005068,1.32e-22,52;UBERON:0006241,1.32e-22,52;UBERON:0007135,1.32e-22,52;UBERON:0003528,1.17e-21,29;UBERON:0002791,1.17e-21,29;UBERON:0001893,1.17e-21,29;UBERON:0001017,6.43e-20,73;UBERON:0001016,4.96e-19,75;UBERON:0002346,1.87e-18,64;UBERON:0003075,1.87e-18,64;UBERON:0007284,1.87e-18,64;UBERON:0002780,5.50e-18,39;UBERON:0001890,5.50e-18,39;UBERON:0006240,5.50e-18,39;UBERON:0003080,2.61e-17,40;UBERON:0002616,1.03e-16,46;UBERON:0010314,3.25e-16,92;UBERON:0000955,3.72e-16,47;UBERON:0006238,3.72e-16,47;UBERON:0010371,1.04e-14,73;UBERON:0003056,1.63e-13,49;UBERON:0004121,4.52e-13,95;UBERON:0000924,4.52e-13,95;UBERON:0006601,4.52e-13,95;UBERON:0000956,4.86e-13,21;UBERON:0001869,4.86e-13,21;UBERON:0000203,4.86e-13,21;UBERON:0002420,2.86e-10,8;UBERON:0007245,2.86e-10,8;UBERON:0010009,2.86e-10,8;UBERON:0010011,2.86e-10,8;UBERON:0000454,2.86e-10,8;UBERON:0002619,2.48e-09,17;UBERON:0000025,3.77e-09,114;UBERON:0004111,6.49e-09,122;UBERON:0002240,6.32e-08,6;UBERON:0005174,6.32e-08,6;UBERON:0001137,6.32e-08,6;UBERON:0000369,7.85e-08,5;UBERON:0002435,7.85e-08,5;UBERON:0000204,7.85e-08,5;UBERON:0010082,7.85e-08,5;UBERON:0001948,5.74e-07,5;UBERON:0002315,5.74e-07,5 | |||
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| |||
|short_description=p9@Prkag2 | |||
}} |
Revision as of 07:18, 14 September 2013
Short description: | p9@Prkag2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Prkag2_5end |
Coexpression cluster: | MCL_coexpression_mm9:966 |
Association with transcript: | -51bp_to_ENSMUST00000150135, NM_001170555, NM_001170556, uc008wsk.2, uc008wsn.2, uc012dtj.1_5end |
EntrezGene: | Prkag2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.65e-21 | 23 |
neuroblast (sensu Vertebrata) | 7.65e-21 | 23 |
neuron | 8.75e-14 | 33 |
neuronal stem cell | 8.75e-14 | 33 |
neuroblast | 8.75e-14 | 33 |
electrically signaling cell | 8.75e-14 | 33 |
neural cell | 2.13e-12 | 43 |
ectodermal cell | 6.15e-12 | 44 |
neurectodermal cell | 6.15e-12 | 44 |
electrically responsive cell | 1.37e-10 | 39 |
electrically active cell | 1.37e-10 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.