FFCP PHASE1:Mm9::chr6:30702466..30702486,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=145|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:30702466..30702486,+|id=chr6:30702466..30702486,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000117,3.26e-07,23;CL:0000337,3.26e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!6.18e-14!52;UBERON:0005068!6.18e-14!52;UBERON:0006241!6.18e-14!52;UBERON:0007135!6.18e-14!52;UBERON:0000955!7.11e-13!50;UBERON:0006238!7.11e-13!50;UBERON:0002616!1.77e-12!49;UBERON:0002020!3.40e-12!34;UBERON:0002346!9.18e-12!71;UBERON:0003075!9.18e-12!71;UBERON:0007284!9.18e-12!71;UBERON:0001017!2.57e-11!73;UBERON:0005743!2.57e-11!73;UBERON:0000033!2.83e-11!63;UBERON:0003056!3.59e-11!49;UBERON:0003080!8.93e-11!40;UBERON:0000073!1.81e-10!75;UBERON:0001016!1.81e-10!75;UBERON:0000025!1.93e-10!114;UBERON:0002780!3.41e-10!39;UBERON:0001890!3.41e-10!39;UBERON:0006240!3.41e-10!39;UBERON:0002791!9.07e-10!29;UBERON:0003528!9.07e-10!29;UBERON:0001893!9.07e-10!29;UBERON:0002021!8.49e-09!10;UBERON:0000411!8.49e-09!10;UBERON:0001950!8.49e-09!10;UBERON:0004121!1.08e-08!102;UBERON:0000924!1.08e-08!102;UBERON:0006601!1.08e-08!102;UBERON:0004111!4.15e-08!122|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.34e-19,34;UBERON:0000073,2.64e-19,54;UBERON:0001049,1.15e-17,52;UBERON:0005068,1.15e-17,52;UBERON:0006241,1.15e-17,52;UBERON:0007135,1.15e-17,52;UBERON:0003528,3.22e-16,29;UBERON:0002791,3.22e-16,29;UBERON:0001893,3.22e-16,29;UBERON:0002346,8.09e-16,64;UBERON:0003075,8.09e-16,64;UBERON:0007284,8.09e-16,64;UBERON:0001017,7.14e-15,73;UBERON:0002021,8.61e-15,10;UBERON:0000411,8.61e-15,10;UBERON:0001950,8.61e-15,10;UBERON:0000955,3.26e-14,47;UBERON:0006238,3.26e-14,47;UBERON:0001016,3.39e-14,75;UBERON:0003080,3.76e-14,40;UBERON:0002616,1.41e-13,46;UBERON:0003056,1.76e-13,49;UBERON:0002780,3.45e-13,39;UBERON:0001890,3.45e-13,39;UBERON:0006240,3.45e-13,39;UBERON:0010371,1.20e-12,73;UBERON:0004121,2.19e-11,95;UBERON:0000924,2.19e-11,95;UBERON:0006601,2.19e-11,95;UBERON:0002619,6.06e-11,17;UBERON:0010314,2.36e-10,92;UBERON:0000956,9.98e-10,21;UBERON:0001869,9.98e-10,21;UBERON:0000203,9.98e-10,21;UBERON:0002420,3.30e-08,8;UBERON:0007245,3.30e-08,8;UBERON:0010009,3.30e-08,8;UBERON:0010011,3.30e-08,8;UBERON:0000454,3.30e-08,8;UBERON:0000025,7.09e-08,114;UBERON:0000369,1.94e-07,5;UBERON:0002435,1.94e-07,5;UBERON:0000204,1.94e-07,5;UBERON:0010082,1.94e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523523743973798,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.809265843438391,3.1739458756322,0,0,0,0,0,0,0,0.384218305321555,0.518448061542388,0.405017814995072,0,1.42825492201902,0.441737081903227,0.122490799214954,0.0958454710182364,0,1.10115880999389,2.55374676170375,5.06901559745603,2.50583946687368,4.02545631850602,3.64639359389732,0,1.68828783009504,10.2374826010463,22.6864010814724,11.8168495063255,1.67759501242771,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0.230615497256059,0.301445281105245,1.29347577849275,0,0.741584903203122,0,0,0.647067399789637,0,0,0,0.585561594023094,0.83778682725382,0,0,0,0,3.59497534571574,3.66000482254901,4.64921102817598,3.12883776346098,2.81287003063364,3.1168206683934,3.73154905055843,0.305518091550949,0,0,0.210441855886474,0.130120442962704,0,0,1.50704817835715,0.680364991513279,1.40925092313335,0.374806898238915,2.58703370739016,0,0.567318240503458,0,0,0,0.348252166522167,0,0.199034266818493,0,0,0,0,0.234526059981096,0.900310307305074,0.710234206755631,0.787056926989615,0.617068451549513,0.697601834251224,0,2.6856028744449,0.822799249567402,2.46251196118643,0.486412857275134,0,0.658650345873152,0.134206418760372,2.3131894342054,6.07137213037778,0,0,0.426576501070468,0,0,0,0.444756087689741,0,0,0.329397909448022,0.251335208800269,0,0,0,0.216138049874694,0,0,0.228497025219458,1.1270773567308,0.814605311381257,0.969762435838129,1.33258057791605,0.505892296994058,0.147610147979602,0.156998727841375,0,0,0,0,0,0,0,0.25462585178142,0.575392274901621,0.486405680325106,0.274561413188081,8.62609239164127,0,0.312037673114561,0.505157755894224,0.179397413521912,0,0,0,0.488894929326078,0.339490171550376,0.704070744865506,1.00503754465089,0.714130922658041,3.12213836572478,1.41871629695572,3.32197034473162,0.797273843287435,1.3109065177259,0.345369963731791,0.289298117163023,0,0,0,0,1.44495530989013,1.64096361229084,0,0,0,0,0,0.238968797952552,0.222798674082394,0,0,0.584511715822624,0,1.28528526568723,0,0,0.651547837414304,0,0,0,0,0.377210159511796,0,0.307435147943927,0,0.363533729477506,0.356497378384721,0,0,0,0.680879211507576,0,0.129358683782755,0.428674070063185,0.354680467284547,0.356737635204141,0.658196082408484,0,0.469343416127421,0,0,0,0.322928853391811,0.180938774784468,0.119372344003136,0,0,3.15223013417866,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0,0.324016022465404,0.836353184057875,0.218362563746178,0.269728692769641,0,0,0.129614973291793,0,0,0,0,0,0,0.675824501963113,0.821500670520278,0.2604087696879,0.209718688851422,0,0,0,0,0,0,0,0.198681354781265,0,0.147689527174577,0,0,0.100826185136841,0,0,0.116876902181569,0,0,0.0897138566094757,0.167884616364078,0,0,0,0,0,17.5073071211291,10.5874804396651,12.0308057822273,9.79563139359019,4.7955776383945,6.7985450765073,2.02506750069542,7.65546045481175,6.34399372577886,8.80192529978094,0.207574695168353,0.798049746802062,0.853668028770671,1.70174701947806,0.419226325255965,0.735374033800057,1.33348036680969,1.85431551515005,1.28367683836726,1.51618327058278,1.77435509923168,1.69763707247469,2.1537546718073,0.960377286073039,1.09127391015665,1.90517476513229,0.579421629724277,1.15745532278223,0.824171801606613,2.50238164228475,3.08582327146874,3.01708870470874,0.476872379894642,0.436039249896986,1.78807822789128,1.69229215783353,2.0122077016005,3.6829759601298,2.17286582153379,1.12228454331548,0.593175090620871,2.56111654176465,2.86461730218783,0.929621047115796,0.578719832943424,1.99848462350357,0.935726433781634,0.214871054048298,0.191288332068843,0.441182838239031,0|short_description=p@chr6:30702466..30702486,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=145 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:30702466..30702486,+ | |||
|id=chr6:30702466..30702486,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.26e-07,23;CL:0000337,3.26e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!6.18e-14!52;UBERON:0005068!6.18e-14!52;UBERON:0006241!6.18e-14!52;UBERON:0007135!6.18e-14!52;UBERON:0000955!7.11e-13!50;UBERON:0006238!7.11e-13!50;UBERON:0002616!1.77e-12!49;UBERON:0002020!3.40e-12!34;UBERON:0002346!9.18e-12!71;UBERON:0003075!9.18e-12!71;UBERON:0007284!9.18e-12!71;UBERON:0001017!2.57e-11!73;UBERON:0005743!2.57e-11!73;UBERON:0000033!2.83e-11!63;UBERON:0003056!3.59e-11!49;UBERON:0003080!8.93e-11!40;UBERON:0000073!1.81e-10!75;UBERON:0001016!1.81e-10!75;UBERON:0000025!1.93e-10!114;UBERON:0002780!3.41e-10!39;UBERON:0001890!3.41e-10!39;UBERON:0006240!3.41e-10!39;UBERON:0002791!9.07e-10!29;UBERON:0003528!9.07e-10!29;UBERON:0001893!9.07e-10!29;UBERON:0002021!8.49e-09!10;UBERON:0000411!8.49e-09!10;UBERON:0001950!8.49e-09!10;UBERON:0004121!1.08e-08!102;UBERON:0000924!1.08e-08!102;UBERON:0006601!1.08e-08!102;UBERON:0004111!4.15e-08!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.34e-19,34;UBERON:0000073,2.64e-19,54;UBERON:0001049,1.15e-17,52;UBERON:0005068,1.15e-17,52;UBERON:0006241,1.15e-17,52;UBERON:0007135,1.15e-17,52;UBERON:0003528,3.22e-16,29;UBERON:0002791,3.22e-16,29;UBERON:0001893,3.22e-16,29;UBERON:0002346,8.09e-16,64;UBERON:0003075,8.09e-16,64;UBERON:0007284,8.09e-16,64;UBERON:0001017,7.14e-15,73;UBERON:0002021,8.61e-15,10;UBERON:0000411,8.61e-15,10;UBERON:0001950,8.61e-15,10;UBERON:0000955,3.26e-14,47;UBERON:0006238,3.26e-14,47;UBERON:0001016,3.39e-14,75;UBERON:0003080,3.76e-14,40;UBERON:0002616,1.41e-13,46;UBERON:0003056,1.76e-13,49;UBERON:0002780,3.45e-13,39;UBERON:0001890,3.45e-13,39;UBERON:0006240,3.45e-13,39;UBERON:0010371,1.20e-12,73;UBERON:0004121,2.19e-11,95;UBERON:0000924,2.19e-11,95;UBERON:0006601,2.19e-11,95;UBERON:0002619,6.06e-11,17;UBERON:0010314,2.36e-10,92;UBERON:0000956,9.98e-10,21;UBERON:0001869,9.98e-10,21;UBERON:0000203,9.98e-10,21;UBERON:0002420,3.30e-08,8;UBERON:0007245,3.30e-08,8;UBERON:0010009,3.30e-08,8;UBERON:0010011,3.30e-08,8;UBERON:0000454,3.30e-08,8;UBERON:0000025,7.09e-08,114;UBERON:0000369,1.94e-07,5;UBERON:0002435,1.94e-07,5;UBERON:0000204,1.94e-07,5;UBERON:0010082,1.94e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523523743973798,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.809265843438391,3.1739458756322,0,0,0,0,0,0,0,0.384218305321555,0.518448061542388,0.405017814995072,0,1.42825492201902,0.441737081903227,0.122490799214954,0.0958454710182364,0,1.10115880999389,2.55374676170375,5.06901559745603,2.50583946687368,4.02545631850602,3.64639359389732,0,1.68828783009504,10.2374826010463,22.6864010814724,11.8168495063255,1.67759501242771,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0.230615497256059,0.301445281105245,1.29347577849275,0,0.741584903203122,0,0,0.647067399789637,0,0,0,0.585561594023094,0.83778682725382,0,0,0,0,3.59497534571574,3.66000482254901,4.64921102817598,3.12883776346098,2.81287003063364,3.1168206683934,3.73154905055843,0.305518091550949,0,0,0.210441855886474,0.130120442962704,0,0,1.50704817835715,0.680364991513279,1.40925092313335,0.374806898238915,2.58703370739016,0,0.567318240503458,0,0,0,0.348252166522167,0,0.199034266818493,0,0,0,0,0.234526059981096,0.900310307305074,0.710234206755631,0.787056926989615,0.617068451549513,0.697601834251224,0,2.6856028744449,0.822799249567402,2.46251196118643,0.486412857275134,0,0.658650345873152,0.134206418760372,2.3131894342054,6.07137213037778,0,0,0.426576501070468,0,0,0,0.444756087689741,0,0,0.329397909448022,0.251335208800269,0,0,0,0.216138049874694,0,0,0.228497025219458,1.1270773567308,0.814605311381257,0.969762435838129,1.33258057791605,0.505892296994058,0.147610147979602,0.156998727841375,0,0,0,0,0,0,0,0.25462585178142,0.575392274901621,0.486405680325106,0.274561413188081,8.62609239164127,0,0.312037673114561,0.505157755894224,0.179397413521912,0,0,0,0.488894929326078,0.339490171550376,0.704070744865506,1.00503754465089,0.714130922658041,3.12213836572478,1.41871629695572,3.32197034473162,0.797273843287435,1.3109065177259,0.345369963731791,0.289298117163023,0,0,0,0,1.44495530989013,1.64096361229084,0,0,0,0,0,0.238968797952552,0.222798674082394,0,0,0.584511715822624,0,1.28528526568723,0,0,0.651547837414304,0,0,0,0,0.377210159511796,0,0.307435147943927,0,0.363533729477506,0.356497378384721,0,0,0,0.680879211507576,0,0.129358683782755,0.428674070063185,0.354680467284547,0.356737635204141,0.658196082408484,0,0.469343416127421,0,0,0,0.322928853391811,0.180938774784468,0.119372344003136,0,0,3.15223013417866,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0,0.324016022465404,0.836353184057875,0.218362563746178,0.269728692769641,0,0,0.129614973291793,0,0,0,0,0,0,0.675824501963113,0.821500670520278,0.2604087696879,0.209718688851422,0,0,0,0,0,0,0,0.198681354781265,0,0.147689527174577,0,0,0.100826185136841,0,0,0.116876902181569,0,0,0.0897138566094757,0.167884616364078,0,0,0,0,0,17.5073071211291,10.5874804396651,12.0308057822273,9.79563139359019,4.7955776383945,6.7985450765073,2.02506750069542,7.65546045481175,6.34399372577886,8.80192529978094,0.207574695168353,0.798049746802062,0.853668028770671,1.70174701947806,0.419226325255965,0.735374033800057,1.33348036680969,1.85431551515005,1.28367683836726,1.51618327058278,1.77435509923168,1.69763707247469,2.1537546718073,0.960377286073039,1.09127391015665,1.90517476513229,0.579421629724277,1.15745532278223,0.824171801606613,2.50238164228475,3.08582327146874,3.01708870470874,0.476872379894642,0.436039249896986,1.78807822789128,1.69229215783353,2.0122077016005,3.6829759601298,2.17286582153379,1.12228454331548,0.593175090620871,2.56111654176465,2.86461730218783,0.929621047115796,0.578719832943424,1.99848462350357,0.935726433781634,0.214871054048298,0.191288332068843,0.441182838239031,0 | |||
|short_description=p@chr6:30702466..30702486,+ | |||
}} |
Revision as of 09:36, 14 September 2013
Short description: | p@chr6:30702466..30702486, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:30702466..30702486, + |
Coexpression cluster: | MCL_coexpression_mm9:145 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.26e-07 | 23 |
neuroblast (sensu Vertebrata) | 3.26e-07 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.