FFCP PHASE1:Mm9::chr7:25284618..25284623,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=747|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:25284618..25284623,+|id=chr7:25284618..25284623,+|ontology_enrichment_celltype=CL:0000221!2.83e-26!44;CL:0000133!2.83e-26!44;CL:0002319!6.87e-26!43;CL:0000055!1.08e-22!50;CL:0000540!5.20e-21!33;CL:0000047!5.20e-21!33;CL:0000031!5.20e-21!33;CL:0000404!5.20e-21!33;CL:0000117!5.51e-21!23;CL:0000337!5.51e-21!23;CL:0000393!1.84e-18!39;CL:0000211!1.84e-18!39;CL:0002321!4.04e-15!70;CL:0000220!4.04e-15!70|ontology_enrichment_celltype_v019_2=CL:0000117,7.64e-41,23;CL:0000337,7.64e-41,23;CL:0002319,1.25e-36,43;CL:0000221,1.11e-35,44;CL:0000133,1.11e-35,44;CL:0000540,2.97e-30,33;CL:0000047,2.97e-30,33;CL:0000031,2.97e-30,33;CL:0000404,2.97e-30,33;CL:0000393,6.22e-25,39;CL:0000211,6.22e-25,39;CL:0002321,1.63e-20,70;CL:0000723,1.11e-10,91;CL:0000048,1.11e-10,91;CL:0000034,9.93e-10,97;CL:0002610,1.21e-09,3;CL:0002614,3.04e-09,3;CL:0002612,3.93e-09,3;CL:0002453,6.07e-09,8;CL:0000120,1.30e-08,3;CL:0000878,1.57e-07,2;CL:0000129,1.57e-07,2;CL:0002611,2.94e-07,2;CL:0000333,4.36e-07,10;CL:0000095,4.36e-07,10;CL:0000243,4.36e-07,10;CL:0000123,4.36e-07,10;CL:0000125,4.36e-07,10;CL:0000030,4.36e-07,10;CL:0000339,4.36e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.05e-38!75;UBERON:0001016!1.05e-38!75;UBERON:0001017!2.27e-37!73;UBERON:0005743!2.27e-37!73;UBERON:0004121!5.92e-31!102;UBERON:0000924!5.92e-31!102;UBERON:0006601!5.92e-31!102;UBERON:0002020!6.72e-27!34;UBERON:0001049!3.66e-26!52;UBERON:0005068!3.66e-26!52;UBERON:0006241!3.66e-26!52;UBERON:0007135!3.66e-26!52;UBERON:0000955!3.83e-24!50;UBERON:0006238!3.83e-24!50;UBERON:0002616!1.80e-23!49;UBERON:0002791!1.44e-21!29;UBERON:0003528!1.44e-21!29;UBERON:0001893!1.44e-21!29;UBERON:0000033!4.36e-21!63;UBERON:0002346!4.92e-21!71;UBERON:0003075!4.92e-21!71;UBERON:0007284!4.92e-21!71;UBERON:0003080!2.19e-17!40;UBERON:0002780!8.82e-17!39;UBERON:0001890!8.82e-17!39;UBERON:0006240!8.82e-17!39;UBERON:0003056!5.70e-16!49;UBERON:0000956!6.71e-15!21;UBERON:0001869!6.71e-15!21;UBERON:0000203!6.71e-15!21;UBERON:0007811!4.10e-12!86;UBERON:0002619!2.02e-11!17;UBERON:0000153!6.67e-10!94;UBERON:0003076!1.47e-09!12;UBERON:0003057!1.47e-09!12;UBERON:0002021!2.34e-08!10;UBERON:0000411!2.34e-08!10;UBERON:0001950!2.34e-08!10;UBERON:0002420!7.37e-08!8;UBERON:0007245!7.37e-08!8;UBERON:0010009!7.37e-08!8;UBERON:0010011!7.37e-08!8;UBERON:0000454!7.37e-08!8;UBERON:0002240!4.01e-07!6;UBERON:0005174!4.01e-07!6;UBERON:0001137!4.01e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.04e-35,73;UBERON:0001016,9.61e-34,75;UBERON:0002020,1.48e-32,34;UBERON:0000073,2.47e-28,54;UBERON:0004121,1.87e-25,95;UBERON:0000924,1.87e-25,95;UBERON:0006601,1.87e-25,95;UBERON:0001049,5.18e-22,52;UBERON:0005068,5.18e-22,52;UBERON:0006241,5.18e-22,52;UBERON:0007135,5.18e-22,52;UBERON:0003528,2.11e-21,29;UBERON:0002791,2.11e-21,29;UBERON:0001893,2.11e-21,29;UBERON:0002346,5.34e-17,64;UBERON:0003075,5.34e-17,64;UBERON:0007284,5.34e-17,64;UBERON:0002780,4.96e-15,39;UBERON:0001890,4.96e-15,39;UBERON:0006240,4.96e-15,39;UBERON:0001948,9.45e-15,5;UBERON:0002315,9.45e-15,5;UBERON:0003080,1.44e-14,40;UBERON:0010371,2.55e-14,73;UBERON:0002616,4.22e-14,46;UBERON:0000956,4.32e-14,21;UBERON:0001869,4.32e-14,21;UBERON:0000203,4.32e-14,21;UBERON:0000955,1.01e-13,47;UBERON:0006238,1.01e-13,47;UBERON:0002021,2.95e-13,10;UBERON:0000411,2.95e-13,10;UBERON:0001950,2.95e-13,10;UBERON:0002240,3.06e-12,6;UBERON:0005174,3.06e-12,6;UBERON:0001137,3.06e-12,6;UBERON:0002619,8.57e-12,17;UBERON:0003056,2.88e-11,49;UBERON:0010314,2.17e-10,92;UBERON:0004684,1.21e-09,3;UBERON:0002275,1.21e-09,3;UBERON:0011216,1.77e-09,194;UBERON:0002038,3.04e-09,3;UBERON:0009663,3.04e-09,3;UBERON:0009661,3.04e-09,3;UBERON:0000125,3.04e-09,3;UBERON:0002308,3.04e-09,3;UBERON:0002257,3.93e-09,3;UBERON:0002420,1.31e-08,8;UBERON:0007245,1.31e-08,8;UBERON:0010009,1.31e-08,8;UBERON:0010011,1.31e-08,8;UBERON:0000454,1.31e-08,8;UBERON:0003076,2.11e-08,12;UBERON:0003057,2.11e-08,12;UBERON:0000025,1.74e-07,114;UBERON:0002256,2.94e-07,2;UBERON:0002950,4.99e-07,4;UBERON:0001891,4.99e-07,4;UBERON:0009616,4.99e-07,4;UBERON:0010286,4.99e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,3.70642765846759,0.219686182734472,1.36100929351998,1.53985063787899,0,0,0,0,0.257259436035947,0,0,1.61853168687678,1.5869729378161,1.90149421051854,0,0,0,0,0,5.69240209984969,10.373894243682,1.55534418462716,4.86021377994086,0.630974884054146,4.85606673486466,3.75476519617743,0.489963196859816,1.53352753629178,0,2.20231761998777,3.06449611404451,3.99376986466233,0.791317726381163,1.55528994124096,2.08365348222704,2.79182999001381,2.25105044012672,1.98637722109853,4.41942878210502,2.27794689278565,1.1183966749518,0.681535739998656,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0.649473123033642,0,0.505524445014783,0,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.628340120440365,0,0,0,0,0.299581278809645,0.457500602818626,0.125654352112864,0.695297280769106,0.767146371990992,0.20778804455956,0.162241263067758,0.203678727700633,0,0,0,0,0,0,0.150704817835715,0.0680364991513279,0.2562274405697,0.187403449119458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0.630869845692382,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126473074248515,0.442830443938806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275936746304732,0.642202359951168,0.468846746368813,0,0,0,0,0.646270193198397,0.477937595905104,0.445597348164788,0.283076530788832,0,0.584511715822624,1.58115111178609,0.321321316421807,0,0.178065603667255,0.162886959353576,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0,0,0,0,0,0.119372344003136,0,0,0.370850604021019,0,0,0,0,0,0,0,0.139951452323658,0,0,0.158167996790568,0,0,0.209088296014469,0,0,0,0.26175594198403,0,0,0,0.149516546043979,0,0,0.516639293910924,0,0.117357238645754,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0.221985953374065,0,0.167884616364078,0,0,0,0,0,2.82375921308533,4.14292712856459,1.71868654031819,0.515559547031063,2.74033007908257,0,2.02506750069542,1.80128481289688,0.453142408984205,2.07104124700728,0.103787347584177,0.399024873401031,0,0,0,0,0.222246727801615,0,0,0.252697211763798,0,0,0,0,0.17230640686684,0,0.115884325944855,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0,0,0.470546902076653,0,0,0,0,0,0,0,0,0,0.192906610981141,0,0.233931608445408,0,0,0,0.231867835620421|short_description=p@chr7:25284618..25284623,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=747 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:25284618..25284623,+ | |||
|id=chr7:25284618..25284623,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.83e-26!44;CL:0000133!2.83e-26!44;CL:0002319!6.87e-26!43;CL:0000055!1.08e-22!50;CL:0000540!5.20e-21!33;CL:0000047!5.20e-21!33;CL:0000031!5.20e-21!33;CL:0000404!5.20e-21!33;CL:0000117!5.51e-21!23;CL:0000337!5.51e-21!23;CL:0000393!1.84e-18!39;CL:0000211!1.84e-18!39;CL:0002321!4.04e-15!70;CL:0000220!4.04e-15!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.64e-41,23;CL:0000337,7.64e-41,23;CL:0002319,1.25e-36,43;CL:0000221,1.11e-35,44;CL:0000133,1.11e-35,44;CL:0000540,2.97e-30,33;CL:0000047,2.97e-30,33;CL:0000031,2.97e-30,33;CL:0000404,2.97e-30,33;CL:0000393,6.22e-25,39;CL:0000211,6.22e-25,39;CL:0002321,1.63e-20,70;CL:0000723,1.11e-10,91;CL:0000048,1.11e-10,91;CL:0000034,9.93e-10,97;CL:0002610,1.21e-09,3;CL:0002614,3.04e-09,3;CL:0002612,3.93e-09,3;CL:0002453,6.07e-09,8;CL:0000120,1.30e-08,3;CL:0000878,1.57e-07,2;CL:0000129,1.57e-07,2;CL:0002611,2.94e-07,2;CL:0000333,4.36e-07,10;CL:0000095,4.36e-07,10;CL:0000243,4.36e-07,10;CL:0000123,4.36e-07,10;CL:0000125,4.36e-07,10;CL:0000030,4.36e-07,10;CL:0000339,4.36e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.05e-38!75;UBERON:0001016!1.05e-38!75;UBERON:0001017!2.27e-37!73;UBERON:0005743!2.27e-37!73;UBERON:0004121!5.92e-31!102;UBERON:0000924!5.92e-31!102;UBERON:0006601!5.92e-31!102;UBERON:0002020!6.72e-27!34;UBERON:0001049!3.66e-26!52;UBERON:0005068!3.66e-26!52;UBERON:0006241!3.66e-26!52;UBERON:0007135!3.66e-26!52;UBERON:0000955!3.83e-24!50;UBERON:0006238!3.83e-24!50;UBERON:0002616!1.80e-23!49;UBERON:0002791!1.44e-21!29;UBERON:0003528!1.44e-21!29;UBERON:0001893!1.44e-21!29;UBERON:0000033!4.36e-21!63;UBERON:0002346!4.92e-21!71;UBERON:0003075!4.92e-21!71;UBERON:0007284!4.92e-21!71;UBERON:0003080!2.19e-17!40;UBERON:0002780!8.82e-17!39;UBERON:0001890!8.82e-17!39;UBERON:0006240!8.82e-17!39;UBERON:0003056!5.70e-16!49;UBERON:0000956!6.71e-15!21;UBERON:0001869!6.71e-15!21;UBERON:0000203!6.71e-15!21;UBERON:0007811!4.10e-12!86;UBERON:0002619!2.02e-11!17;UBERON:0000153!6.67e-10!94;UBERON:0003076!1.47e-09!12;UBERON:0003057!1.47e-09!12;UBERON:0002021!2.34e-08!10;UBERON:0000411!2.34e-08!10;UBERON:0001950!2.34e-08!10;UBERON:0002420!7.37e-08!8;UBERON:0007245!7.37e-08!8;UBERON:0010009!7.37e-08!8;UBERON:0010011!7.37e-08!8;UBERON:0000454!7.37e-08!8;UBERON:0002240!4.01e-07!6;UBERON:0005174!4.01e-07!6;UBERON:0001137!4.01e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.04e-35,73;UBERON:0001016,9.61e-34,75;UBERON:0002020,1.48e-32,34;UBERON:0000073,2.47e-28,54;UBERON:0004121,1.87e-25,95;UBERON:0000924,1.87e-25,95;UBERON:0006601,1.87e-25,95;UBERON:0001049,5.18e-22,52;UBERON:0005068,5.18e-22,52;UBERON:0006241,5.18e-22,52;UBERON:0007135,5.18e-22,52;UBERON:0003528,2.11e-21,29;UBERON:0002791,2.11e-21,29;UBERON:0001893,2.11e-21,29;UBERON:0002346,5.34e-17,64;UBERON:0003075,5.34e-17,64;UBERON:0007284,5.34e-17,64;UBERON:0002780,4.96e-15,39;UBERON:0001890,4.96e-15,39;UBERON:0006240,4.96e-15,39;UBERON:0001948,9.45e-15,5;UBERON:0002315,9.45e-15,5;UBERON:0003080,1.44e-14,40;UBERON:0010371,2.55e-14,73;UBERON:0002616,4.22e-14,46;UBERON:0000956,4.32e-14,21;UBERON:0001869,4.32e-14,21;UBERON:0000203,4.32e-14,21;UBERON:0000955,1.01e-13,47;UBERON:0006238,1.01e-13,47;UBERON:0002021,2.95e-13,10;UBERON:0000411,2.95e-13,10;UBERON:0001950,2.95e-13,10;UBERON:0002240,3.06e-12,6;UBERON:0005174,3.06e-12,6;UBERON:0001137,3.06e-12,6;UBERON:0002619,8.57e-12,17;UBERON:0003056,2.88e-11,49;UBERON:0010314,2.17e-10,92;UBERON:0004684,1.21e-09,3;UBERON:0002275,1.21e-09,3;UBERON:0011216,1.77e-09,194;UBERON:0002038,3.04e-09,3;UBERON:0009663,3.04e-09,3;UBERON:0009661,3.04e-09,3;UBERON:0000125,3.04e-09,3;UBERON:0002308,3.04e-09,3;UBERON:0002257,3.93e-09,3;UBERON:0002420,1.31e-08,8;UBERON:0007245,1.31e-08,8;UBERON:0010009,1.31e-08,8;UBERON:0010011,1.31e-08,8;UBERON:0000454,1.31e-08,8;UBERON:0003076,2.11e-08,12;UBERON:0003057,2.11e-08,12;UBERON:0000025,1.74e-07,114;UBERON:0002256,2.94e-07,2;UBERON:0002950,4.99e-07,4;UBERON:0001891,4.99e-07,4;UBERON:0009616,4.99e-07,4;UBERON:0010286,4.99e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,3.70642765846759,0.219686182734472,1.36100929351998,1.53985063787899,0,0,0,0,0.257259436035947,0,0,1.61853168687678,1.5869729378161,1.90149421051854,0,0,0,0,0,5.69240209984969,10.373894243682,1.55534418462716,4.86021377994086,0.630974884054146,4.85606673486466,3.75476519617743,0.489963196859816,1.53352753629178,0,2.20231761998777,3.06449611404451,3.99376986466233,0.791317726381163,1.55528994124096,2.08365348222704,2.79182999001381,2.25105044012672,1.98637722109853,4.41942878210502,2.27794689278565,1.1183966749518,0.681535739998656,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0.649473123033642,0,0.505524445014783,0,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.628340120440365,0,0,0,0,0.299581278809645,0.457500602818626,0.125654352112864,0.695297280769106,0.767146371990992,0.20778804455956,0.162241263067758,0.203678727700633,0,0,0,0,0,0,0.150704817835715,0.0680364991513279,0.2562274405697,0.187403449119458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0.630869845692382,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126473074248515,0.442830443938806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275936746304732,0.642202359951168,0.468846746368813,0,0,0,0,0.646270193198397,0.477937595905104,0.445597348164788,0.283076530788832,0,0.584511715822624,1.58115111178609,0.321321316421807,0,0.178065603667255,0.162886959353576,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0,0,0,0,0,0.119372344003136,0,0,0.370850604021019,0,0,0,0,0,0,0,0.139951452323658,0,0,0.158167996790568,0,0,0.209088296014469,0,0,0,0.26175594198403,0,0,0,0.149516546043979,0,0,0.516639293910924,0,0.117357238645754,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0.221985953374065,0,0.167884616364078,0,0,0,0,0,2.82375921308533,4.14292712856459,1.71868654031819,0.515559547031063,2.74033007908257,0,2.02506750069542,1.80128481289688,0.453142408984205,2.07104124700728,0.103787347584177,0.399024873401031,0,0,0,0,0.222246727801615,0,0,0.252697211763798,0,0,0,0,0.17230640686684,0,0.115884325944855,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0,0,0.470546902076653,0,0,0,0,0,0,0,0,0,0.192906610981141,0,0.233931608445408,0,0,0,0.231867835620421 | |||
|short_description=p@chr7:25284618..25284623,+ | |||
}} |
Revision as of 12:47, 14 September 2013
Short description: | p@chr7:25284618..25284623, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:25284618..25284623, + |
Coexpression cluster: | MCL_coexpression_mm9:747 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.64e-41 | 23 |
neuroblast (sensu Vertebrata) | 7.64e-41 | 23 |
neural cell | 1.25e-36 | 43 |
ectodermal cell | 1.11e-35 | 44 |
neurectodermal cell | 1.11e-35 | 44 |
neuron | 2.97e-30 | 33 |
neuronal stem cell | 2.97e-30 | 33 |
neuroblast | 2.97e-30 | 33 |
electrically signaling cell | 2.97e-30 | 33 |
electrically responsive cell | 6.22e-25 | 39 |
electrically active cell | 6.22e-25 | 39 |
embryonic cell | 1.63e-20 | 70 |
somatic stem cell | 1.11e-10 | 91 |
multi fate stem cell | 1.11e-10 | 91 |
stem cell | 9.93e-10 | 97 |
raphe nuclei neuron | 1.21e-09 | 3 |
neuron of the substantia nigra | 3.04e-09 | 3 |
neuron of the ventral spinal cord | 3.93e-09 | 3 |
oligodendrocyte precursor cell | 6.07e-09 | 8 |
granule cell | 1.30e-08 | 3 |
central nervous system macrophage | 1.57e-07 | 2 |
microglial cell | 1.57e-07 | 2 |
neuron of the dorsal spinal cord | 2.94e-07 | 2 |
migratory neural crest cell | 4.36e-07 | 10 |
neuron associated cell | 4.36e-07 | 10 |
glial cell (sensu Vertebrata) | 4.36e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 4.36e-07 | 10 |
glial cell | 4.36e-07 | 10 |
glioblast | 4.36e-07 | 10 |
glioblast (sensu Vertebrata) | 4.36e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.