FFCP PHASE1:Hg19::chr4:54424366..54424394,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84708 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6657 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000306888_5end | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_1_at_LNX1_5end | |||
|id=chr4:54424366..54424394,- | |||
|ontology_enrichment_celltype=CL:0002620!6.25e-14!23;CL:0002139!7.86e-12!24;CL:0002078!7.92e-09!44;CL:0000115!8.42e-09!35;CL:0000071!5.04e-08!18;CL:0002546!5.04e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.52e-16;23!CL:0002139;9.46e-12;24!CL:0000115;7.51e-09;36!CL:0000153;1.93e-08;9!CL:0000447;1.93e-08;9!CL:0000071;4.59e-07;18!CL:0000138;5.40e-07;6!CL:0002138;6.31e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,4.37e-16,23;CL:0002139,7.61e-12,24;CL:0000115,2.06e-10,36;CL:0002078,1.80e-09,45;CL:0000153,1.86e-08,9;CL:0000447,1.86e-08,9;CL:0005020,3.93e-07,6;CL:0002138,3.93e-07,6;CL:0005022,3.93e-07,6;CL:0000071,5.02e-07,18;CL:0002546,5.02e-07,18;CL:0000058,5.31e-07,6;CL:0000138,5.31e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.04e-10;82!CL:0002546;4.59e-07;18!CL:0005022;6.31e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.24e-07;5!DOID:450;1.24e-07;5!DOID:66;1.24e-07;5!DOID:423;1.24e-07;5!DOID:0080000;1.24e-07;5!DOID:11722;1.24e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.33e-07,5;DOID:450,1.33e-07,5;DOID:66,1.33e-07,5;DOID:423,1.33e-07,5;DOID:0080000,1.33e-07,5;DOID:11722,1.33e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0005743!8.16e-53!86;UBERON:0001017!6.09e-50!82;UBERON:0001049!5.64e-47!57;UBERON:0005068!5.64e-47!57;UBERON:0006241!5.64e-47!57;UBERON:0007135!5.64e-47!57;UBERON:0000073!2.86e-46!94;UBERON:0001016!2.86e-46!94;UBERON:0003075!1.15e-44!86;UBERON:0007284!1.15e-44!86;UBERON:0000955!4.42e-44!69;UBERON:0006238!4.42e-44!69;UBERON:0002616!1.40e-42!59;UBERON:0002346!1.74e-41!90;UBERON:0003080!3.29e-36!42;UBERON:0002780!1.03e-35!41;UBERON:0001890!1.03e-35!41;UBERON:0006240!1.03e-35!41;UBERON:0003056!5.58e-33!61;UBERON:0001893!7.43e-33!34;UBERON:0002020!1.34e-32!34;UBERON:0003528!1.34e-32!34;UBERON:0001869!1.04e-31!32;UBERON:0002791!1.09e-31!33;UBERON:0004121!7.78e-30!169;UBERON:0000033!1.97e-29!123;UBERON:0000924!2.06e-28!173;UBERON:0006601!2.06e-28!173;UBERON:0000153!1.31e-27!129;UBERON:0007811!1.31e-27!129;UBERON:0000956!9.41e-25!25;UBERON:0000203!9.41e-25!25;UBERON:0002619!1.35e-23!22;UBERON:0007023!3.68e-23!115;UBERON:0000119!4.29e-22!312;UBERON:0001950!1.04e-21!20;UBERON:0000483!1.29e-21!309;UBERON:0000025!2.05e-20!194;UBERON:0000475!1.67e-18!365;UBERON:0004111!3.09e-17!241;UBERON:0000477!9.46e-17!286;UBERON:0000467!2.25e-14!625;UBERON:0000480!2.92e-14!626;UBERON:0000468!1.71e-12!659;UBERON:0002097!1.25e-11!40;UBERON:0003076!1.30e-11!15;UBERON:0003057!1.30e-11!15;UBERON:0000064!2.66e-11!219;UBERON:0002199!3.98e-10!45;UBERON:0002416!3.98e-10!45;UBERON:0004733!5.86e-10!12;UBERON:0002028!5.86e-10!12;UBERON:0007277!5.86e-10!12;UBERON:0002420!1.13e-09!9;UBERON:0007245!1.13e-09!9;UBERON:0010009!1.13e-09!9;UBERON:0010011!1.13e-09!9;UBERON:0000454!1.13e-09!9;UBERON:0002308!3.17e-09!9;UBERON:0000125!3.17e-09!9;UBERON:0004732!6.44e-09!13;UBERON:0000200!3.70e-08!6;UBERON:0002680!4.75e-08!9;UBERON:0001895!4.75e-08!9;UBERON:0010092!4.75e-08!9;UBERON:0001986!5.04e-08!18;UBERON:0004638!5.04e-08!18;UBERON:0004852!5.04e-08!18;UBERON:0000481!7.80e-08!347;UBERON:0001871!1.33e-07!7;UBERON:0009663!1.40e-07!7;UBERON:0000062!3.22e-07!511;UBERON:0001872!4.22e-07!5;UBERON:0002021!6.11e-07!5;UBERON:0002298!7.09e-07!8;UBERON:0006914!7.79e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.60e-35;32!UBERON:0001893;3.75e-34;34!UBERON:0003528;1.12e-33;34!UBERON:0002020;1.12e-33;34!UBERON:0002791;4.55e-33;32!UBERON:0002619;2.07e-32;22!UBERON:0000956;5.76e-30;25!UBERON:0000203;5.76e-30;25!UBERON:0001950;8.97e-30;20!UBERON:0002780;1.21e-29;41!UBERON:0001890;1.21e-29;41!UBERON:0000073;4.27e-27;53!UBERON:0002616;4.27e-27;53!UBERON:0001017;1.20e-20;75!UBERON:0000955;1.98e-20;68!UBERON:0001016;3.06e-17;83!UBERON:0002420;7.56e-11;9!UBERON:0007245;7.56e-11;9!UBERON:0010009;7.56e-11;9!UBERON:0010011;7.56e-11;9!UBERON:0000454;7.56e-11;9!UBERON:0000200;1.05e-10;6!UBERON:0002097;1.11e-10;41!UBERON:0000125;2.68e-10;9!UBERON:0002308;2.68e-10;9!UBERON:0001872;3.07e-09;5!UBERON:0002021;4.88e-09;5!UBERON:0001871;9.30e-09;6!UBERON:0000349;1.04e-08;5!UBERON:0004733;2.46e-08;12!UBERON:0002028;2.46e-08;12!UBERON:0009663;5.11e-08;7!UBERON:0010314;5.99e-08;132!UBERON:0007023;9.03e-08;114!UBERON:0002199;1.17e-07;46!UBERON:0002416;1.17e-07;46!UBERON:0004732;1.53e-07;13!UBERON:0000369;2.34e-07;4!UBERON:0002435;2.34e-07;4!UBERON:0000204;2.34e-07;4!UBERON:0002680;2.91e-07;9!UBERON:0001895;2.91e-07;9!UBERON:0004638;4.59e-07;18!UBERON:0001986;4.59e-07;18!UBERON:0004852;4.59e-07;18!UBERON:0002067;6.10e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.66e-51,81;UBERON:0001049,2.34e-49,56;UBERON:0005068,2.34e-49,56;UBERON:0006241,2.34e-49,56;UBERON:0007135,2.34e-49,56;UBERON:0000073,1.06e-48,53;UBERON:0002616,1.06e-48,53;UBERON:0001016,6.40e-44,89;UBERON:0000955,8.41e-44,68;UBERON:0006238,8.41e-44,68;UBERON:0003075,2.31e-42,82;UBERON:0007284,2.31e-42,82;UBERON:0002780,7.82e-42,41;UBERON:0001890,7.82e-42,41;UBERON:0003080,7.82e-42,41;UBERON:0006240,7.82e-42,41;UBERON:0001869,1.49e-39,32;UBERON:0002346,1.52e-39,86;UBERON:0001893,3.65e-39,34;UBERON:0003528,7.80e-39,34;UBERON:0002020,7.80e-39,34;UBERON:0010371,9.16e-37,104;UBERON:0002791,1.80e-36,32;UBERON:0010314,2.44e-34,132;UBERON:0003056,2.16e-33,61;UBERON:0002619,2.11e-32,22;UBERON:0000956,5.87e-30,25;UBERON:0000203,5.87e-30,25;UBERON:0001950,8.94e-30,20;UBERON:0004121,3.32e-26,171;UBERON:0000924,3.32e-26,171;UBERON:0006601,3.32e-26,171;UBERON:0007023,9.88e-23,114;UBERON:0000025,2.51e-19,192;UBERON:0000483,8.94e-18,306;UBERON:0000119,2.36e-17,309;UBERON:0004111,4.00e-15,240;UBERON:0002097,9.08e-14,41;UBERON:0002199,1.63e-11,46;UBERON:0002416,1.63e-11,46;UBERON:0002420,8.72e-11,9;UBERON:0007245,8.72e-11,9;UBERON:0010009,8.72e-11,9;UBERON:0010011,8.72e-11,9;UBERON:0000454,8.72e-11,9;UBERON:0000200,1.04e-10,6;UBERON:0000125,3.18e-10,9;UBERON:0002308,3.18e-10,9;UBERON:0011216,7.65e-10,223;UBERON:0001872,3.01e-09,5;UBERON:0003076,4.18e-09,15;UBERON:0003057,4.18e-09,15;UBERON:0002021,5.02e-09,5;UBERON:0001871,9.15e-09,6;UBERON:0000349,1.08e-08,5;UBERON:0004733,2.68e-08,12;UBERON:0002028,2.68e-08,12;UBERON:0007277,2.68e-08,12;UBERON:0009663,5.81e-08,7;UBERON:0004732,1.66e-07,13;UBERON:0000369,2.36e-07,4;UBERON:0002435,2.36e-07,4;UBERON:0000204,2.36e-07,4;UBERON:0010082,2.36e-07,4;UBERON:0002680,3.01e-07,9;UBERON:0001895,3.01e-07,9;UBERON:0010092,3.01e-07,9;UBERON:0004638,5.02e-07,18;UBERON:0001986,5.02e-07,18;UBERON:0004852,5.02e-07,18;UBERON:0002067,5.99e-07,9;UBERON:0004016,5.99e-07,9;UBERON:0010083,5.99e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,1.36142988256051,0.662794751455832,0,0,0,0,2.46242116153576,0.408001382488506,0.313454721478088,0.572471974262113,1.36874425072884,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,20.9634708383048,21.0561922467074,35.4873971454018,13.5198610998687,35.5243455320924,1.13441780596881,0.221729397462564,1.31752178539689,8.77559805834675,0,0,0,0,0,0,0,0,1.78886166630035,0.860234595106124,2.42998351125316,1.13061588384802,1.67799774483962,0,1.25396979922086,2.58416759169329,1.77883131343355,2.67776490211736,2.41697590265488,4.56163263431108,1.95249646038536,0,0.81014194788176,1.51809538082936,1.12264686313085,1.23872628531654,0,0.949265659568129,1.09921046358244,0,0,0,0,0,0,0,0,0,0,0,0,0.538842688278752,0,0,0.576175924479999,0,0.624320153660641,3.4228309292667,4.63290909710583,3.28816596202542,6.151171885989,3.51127016755621,0.204154171254893,0,0.413303124703062,0,0,0,0,0.336672227908132,0,0.277064115484183,0,0,0,0.226864366320042,9.68704032719855,7.26095121983129,4.23863802319124,12.9039171316293,7.62588716364448,4.12224864073007,5.02515512095292,14.1772119082664,2.92311015483596,4.79624171063818,8.28449087780694,0,7.81021103536552,3.32481924151213,0.339121184620975,0,0,0,0,0,0,0,0,0,0,4.5026865673502,6.90674606762403,4.64367928031979,10.8281922250438,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,2.23038153388083,0,0,0,0,0,0,0,0.927443239800615,0.70445216541493,2.59859605969933,1.38895653772983,1.71228737011138,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0,0.12624243342638,0,0,0,1.71072446022705,0.102827492703324,0,0,0.560655421726804,0,0.07333828582095,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,1.42636905040718,2.31650090668127,6.1642896765115,4.47652408099739,0,0,0,0,13.2129204595681,31.2335649258292,20.1055091322201,34.8433831895445,18.5002237979417,0,0,0,0.858840442033979,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55140557914773,1.0795795805107,1.54227252690289,0,0,0,0,0.223874754722178,0,0,1.79515087581472,2.95213181129735,0.650756789328606,0.515205058238611,0,0,0,1.95018073810956,0,0.48335359146061,0.308097234229289,0,0.551346289938122,0,0,0.340906509664404,2.67096106940212,0,0,0,0,0,0,0,0,0,0,0,0.429374660225974,0.372158369359667,0,0,0,0,0,0,0,0.274537029736055,0,0,3.17020642346017,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0.6196469961995,0,0,0,0.35667105148125,0,14.5664268355388,35.5638484396694,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,46.724939445016,28.5558915313341,0,0,0,2.59022384726391,0,0,0,0,6.84287092855976,0,0,0,0,0,0,48.4666373047609,38.8698331298157,25.9497937401552,0,0,0.724999575434793,0,0,0,1.72371686620732,0,0,23.9150174169737,28.9431452700979,7.62908681585416,7.51938967532327,7.38869047383869,35.1016635446356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97666684585995,0,19.6782134409285,0,0,0,0,0,27.5465485467441,1.32691817219825,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.193978032976839,0,3.61569185248852,0,0,71.1613346544077,0,0,1.06726497369676,0,0,0,0,0,0,0,2.44627570932505,2.824276850433,0,0,11.407985485486,2.19048606227189,0,0.429765441419957,0,2.79282401272254,1.83328339209347,2.15361907373044,0.199679000498991,0.429226048136571,0.223171457441873,1.34366944973453,0,0,0,0,0,0,0,19.0855125554233,13.2117303928228,0,0,0,0,0,73.8107113395,0,0.394028536495991,0,0,0,0,4.2881719582402,0,0.25426853765475,0,0,0,0,0,0,0,0,0,5.04203529810047,6.08269968016374,0,0,0.533937062838473,1.25763444079733,0,0,0,0,0,0,0,0,0,0,48.7337498981842,47.9563221064715,34.1771240828745,0.573409195690071,2.21858103073705,5.40238705590036,0.553394539744923,0.124980407962107,0,0,0,0,0.144921028610825,0,0,0,21.9707486119103,6.54076544556695,34.7026376422649,0.228840068396924,0.907385542579434,0,2.21782724984451,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40016658797892,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.5456197411323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,54.0810075312189,38.2580756079079,22.5083741270583,47.1767637753737,31.5089620277148,60.2359668963338,26.3205302379917,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0,0,63.6204047105278,35.1485144376231,35.963502591206,55.4888339196685,36.1003373952025,0,0,0,0,1.07140367175657,1.3451348888753,0,0.227662191351298,2.12885688390333,0,0,9.51576261675644,60.8398155456354,0,0.111231401892069,0,27.3381126453843,0,0.913158720509496,0,0,2.35872595782966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0.971421986118279,0.701818390386317,0,0,0,0.109940516745429,0,0,0,0,0,0,1.57046773691956,0.594092800654172,1.6906229103336,0,0,0.0644578879735772,0,0,0,0,0,0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| |||
|short_description=p1@LNX1 | |||
}} |
Revision as of 01:03, 22 January 2014
Short description: | p1@LNX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LNX1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 0bp_to_ENST00000306888_5end |
EntrezGene: | LNX1 |
HGNC: | 6657 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 4.37e-16 | 23 |
endothelial cell of vascular tree | 7.61e-12 | 24 |
endothelial cell | 2.06e-10 | 36 |
meso-epithelial cell | 1.80e-09 | 45 |
GAG secreting cell | 1.86e-08 | 9 |
carbohydrate secreting cell | 1.86e-08 | 9 |
lymphangioblast | 3.93e-07 | 6 |
endothelial cell of lymphatic vessel | 3.93e-07 | 6 |
vascular lymphangioblast | 3.93e-07 | 6 |
blood vessel endothelial cell | 5.02e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.02e-07 | 18 |
chondroblast | 5.31e-07 | 6 |
chondrocyte | 5.31e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.33e-07 | 5 |
myotonic disease | 1.33e-07 | 5 |
muscle tissue disease | 1.33e-07 | 5 |
myopathy | 1.33e-07 | 5 |
muscular disease | 1.33e-07 | 5 |
myotonic dystrophy | 1.33e-07 | 5 |