FFCP PHASE1:Mm9::chr2:28048589..28048596,+: Difference between revisions
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{{FFCP|EntrezGene=56177|HGNC=|MCL_coexpression_id=13|UniProt=G3X9Q7,Q8R357,O88998,A3KGE4|association_with_transcript=-16bp_to_ENSMUST00000100244,NM_001038613,NM_001038614,uc008iya.1,uc008iyb.1_5end|description=CAGE_peak_12_at_Olfm1_5end|id=chr2:28048589..28048596,+|ontology_enrichment_celltype=CL:0000117!4.76e-15!23;CL:0000337!4.76e-15!23;CL:0000221!3.62e-14!44;CL:0000133!3.62e-14!44;CL:0002319!6.29e-14!43;CL:0000540!7.96e-13!33;CL:0000047!7.96e-13!33;CL:0000031!7.96e-13!33;CL:0000404!7.96e-13!33;CL:0000055!9.99e-11!50;CL:0000393!7.60e-10!39;CL:0000211!7.60e-10!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.87e-26,23;CL:0000337,2.87e-26,23;CL:0000540,1.29e-18,33;CL:0000047,1.29e-18,33;CL:0000031,1.29e-18,33;CL:0000404,1.29e-18,33;CL:0000393,6.06e-15,39;CL:0000211,6.06e-15,39;CL:0002319,1.63e-14,43;CL:0000221,4.62e-14,44;CL:0000133,4.62e-14,44;CL:0002612,4.89e-07,3;CL:0002321,6.28e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.06e-35!75;UBERON:0001016!5.06e-35!75;UBERON:0001017!6.90e-35!73;UBERON:0005743!6.90e-35!73;UBERON:0001049!7.79e-34!52;UBERON:0005068!7.79e-34!52;UBERON:0006241!7.79e-34!52;UBERON:0007135!7.79e-34!52;UBERON:0004121!2.31e-32!102;UBERON:0000924!2.31e-32!102;UBERON:0006601!2.31e-32!102;UBERON:0000033!6.25e-32!63;UBERON:0002346!3.59e-30!71;UBERON:0003075!3.59e-30!71;UBERON:0007284!3.59e-30!71;UBERON:0000955!4.59e-30!50;UBERON:0006238!4.59e-30!50;UBERON:0002616!3.43e-29!49;UBERON:0003056!1.66e-27!49;UBERON:0003080!2.26e-25!40;UBERON:0002020!1.22e-24!34;UBERON:0002780!1.47e-24!39;UBERON:0001890!1.47e-24!39;UBERON:0006240!1.47e-24!39;UBERON:0002791!1.43e-20!29;UBERON:0003528!1.43e-20!29;UBERON:0001893!1.43e-20!29;UBERON:0007811!1.86e-16!86;UBERON:0000956!3.83e-15!21;UBERON:0001869!3.83e-15!21;UBERON:0000203!3.83e-15!21;UBERON:0000153!2.39e-14!94;UBERON:0002619!1.03e-12!17;UBERON:0000025!1.82e-09!114;UBERON:0004111!3.29e-09!122;UBERON:0003076!1.19e-08!12;UBERON:0003057!1.19e-08!12;UBERON:0002021!2.52e-08!10;UBERON:0000411!2.52e-08!10;UBERON:0001950!2.52e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.48e-49,54;UBERON:0001049,2.06e-48,52;UBERON:0005068,2.06e-48,52;UBERON:0006241,2.06e-48,52;UBERON:0007135,2.06e-48,52;UBERON:0001017,2.01e-47,73;UBERON:0001016,6.84e-46,75;UBERON:0002020,4.45e-42,34;UBERON:0000955,1.99e-39,47;UBERON:0006238,1.99e-39,47;UBERON:0002616,1.22e-37,46;UBERON:0002346,1.43e-37,64;UBERON:0003075,1.43e-37,64;UBERON:0007284,1.43e-37,64;UBERON:0004121,4.08e-34,95;UBERON:0000924,4.08e-34,95;UBERON:0006601,4.08e-34,95;UBERON:0003080,6.02e-34,40;UBERON:0003528,6.30e-33,29;UBERON:0002791,6.30e-33,29;UBERON:0001893,6.30e-33,29;UBERON:0002780,2.97e-32,39;UBERON:0001890,2.97e-32,39;UBERON:0006240,2.97e-32,39;UBERON:0010371,8.91e-32,73;UBERON:0003056,2.64e-26,49;UBERON:0010314,2.89e-23,92;UBERON:0000956,3.56e-23,21;UBERON:0001869,3.56e-23,21;UBERON:0000203,3.56e-23,21;UBERON:0002619,4.70e-20,17;UBERON:0002021,1.66e-17,10;UBERON:0000411,1.66e-17,10;UBERON:0001950,1.66e-17,10;UBERON:0000025,5.88e-17,114;UBERON:0004111,3.15e-15,122;UBERON:0003076,4.87e-14,12;UBERON:0003057,4.87e-14,12;UBERON:0002240,5.90e-12,6;UBERON:0005174,5.90e-12,6;UBERON:0001137,5.90e-12,6;UBERON:0011216,1.79e-11,194;UBERON:0002420,1.20e-10,8;UBERON:0007245,1.20e-10,8;UBERON:0010009,1.20e-10,8;UBERON:0010011,1.20e-10,8;UBERON:0000454,1.20e-10,8;UBERON:0001948,2.62e-10,5;UBERON:0002315,2.62e-10,5;UBERON:0000483,6.75e-08,174;UBERON:0000119,1.05e-07,176;UBERON:0002950,1.86e-07,4;UBERON:0001891,1.86e-07,4;UBERON:0009616,1.86e-07,4;UBERON:0010286,1.86e-07,4;UBERON:0002257,4.89e-07,3|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.418531630736908,0,0,0,0,0,0,0.304130793658544,0,0.782391344348039,0.218025156380447,0.659058548203415,0.58328969722285,0,0,0,0,0,0,0,0,0.809265843438391,3.70293685490423,1.90149421051854,0,0,0,0,0,0.599200221036809,1.15265491596466,1.24427534770173,1.4850653216486,0.841299845405528,1.71390590642282,2.20868540951614,1.83736198822431,0.862609239164127,2.75765635983006,0,2.68143409978894,1.38245879930619,1.58263545276233,1.73826522844578,2.08365348222704,1.11673199600552,1.12552522006336,1.98637722109853,3.24091444021034,1.56608848879013,3.72798891650601,0.227178579999552,0.0755715601067855,0.289864488701678,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0.608930956624282,0,0,0,0.125666591329675,0,0.144599356919912,0,0.161766849947409,0,0,0,1.17112318804619,1.04723353406728,0,0,0,0,1.9472783122627,0.915001205637253,2.26177833803156,1.91206752211504,1.53429274398198,2.49345653471472,1.62241263067758,0.101839363850316,0,0,0.210441855886474,0,0.229902104433473,0.900310649026746,0.753524089178575,0.680364991513279,0.640568601424249,0.937017245597288,0.517406741478031,0,0,0,0,0,0.348252166522167,0.205782136407943,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0,0,0,0.134206418760372,3.78521907415429,3.08713837137853,0,0,0,0.232236671860439,0.128867461322093,0,0,0,0,0,0,0,0.38992817423824,0,0,0,0,0.114248512609729,0,0,0.193952487167626,0,0.0632365371242573,0.147610147979602,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0.169745085775188,0,0,0.476087281772027,0.195133647857799,0,0,0.159454768657487,0.327726629431476,0.172684981865896,0,0,0,0,0,1.76605648986571,1.17211686592203,0,0,0,0,0,0.238968797952552,0,1.13230612315533,0.404810701674894,0.292255857911312,0.395287777946524,2.24924921495265,0.141940085208269,0,0.325773918707152,0.164970122972535,0,0.728341908464944,0,0,0,0,0.258428293168221,0,0,0,0,0,1.02131881726136,0.18006109403131,0.129358683782755,0.643011105094777,0.177340233642274,0.891844088010353,0.658196082408484,1.8267896946876,0,0,0,0.16488625294148,0,0.0603129249281559,0.238744688006273,0,0,1.8542530201051,0,0,0,0,0.136694227721025,0,0,0,0,0,0.158167996790568,0.203319467126849,0.216010681643603,0.209088296014469,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0.165458490457098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.386379188064381,1.50145980360946,0,0,0,2.25900737046827,3.22227665555024,2.29158205375759,1.54667864109319,1.37016503954128,2.2661816921691,1.35004500046361,1.80128481289688,1.81256963593682,1.03552062350364,0.103787347584177,0.798049746802062,0.512200817262403,0.486213434136588,0.838452650511929,0.551530525350042,0.44449345560323,0,0,0,0.25347929989024,0,0.280924522409647,0.576226371643824,0.34461281373368,0.476293691283074,0.695305955669133,0.192909220463705,0.412085900803307,0.441596760403192,0.342869252385415,0.354951612318675,0.238436189947321,0.145346416632329,0.188218760830661,0.0846146078916765,0.73171189149109,0,0.407412341537585,0,0.237270036248348,0.492522411877817,0.409231043169689,0.77468420592983,0.192906610981141,0.249810577937946,0.467863216890817,0,0.191288332068843,1.10295709559758,0|short_description=p12@Olfm1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:56177 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:G3X9Q7,uniprot:Q8R357,uniprot:O88998,uniprot:A3KGE4 | |||
|association_with_transcript=-16bp_to_ENSMUST00000100244,NM_001038613,NM_001038614,uc008iya.1,uc008iyb.1_5end | |||
|cluster_id=chr2:28048589..28048596,+ | |||
|description=CAGE_peak_12_at_Olfm1_5end | |||
|id=chr2:28048589..28048596,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.76e-15!23;CL:0000337!4.76e-15!23;CL:0000221!3.62e-14!44;CL:0000133!3.62e-14!44;CL:0002319!6.29e-14!43;CL:0000540!7.96e-13!33;CL:0000047!7.96e-13!33;CL:0000031!7.96e-13!33;CL:0000404!7.96e-13!33;CL:0000055!9.99e-11!50;CL:0000393!7.60e-10!39;CL:0000211!7.60e-10!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.87e-26,23;CL:0000337,2.87e-26,23;CL:0000540,1.29e-18,33;CL:0000047,1.29e-18,33;CL:0000031,1.29e-18,33;CL:0000404,1.29e-18,33;CL:0000393,6.06e-15,39;CL:0000211,6.06e-15,39;CL:0002319,1.63e-14,43;CL:0000221,4.62e-14,44;CL:0000133,4.62e-14,44;CL:0002612,4.89e-07,3;CL:0002321,6.28e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.06e-35!75;UBERON:0001016!5.06e-35!75;UBERON:0001017!6.90e-35!73;UBERON:0005743!6.90e-35!73;UBERON:0001049!7.79e-34!52;UBERON:0005068!7.79e-34!52;UBERON:0006241!7.79e-34!52;UBERON:0007135!7.79e-34!52;UBERON:0004121!2.31e-32!102;UBERON:0000924!2.31e-32!102;UBERON:0006601!2.31e-32!102;UBERON:0000033!6.25e-32!63;UBERON:0002346!3.59e-30!71;UBERON:0003075!3.59e-30!71;UBERON:0007284!3.59e-30!71;UBERON:0000955!4.59e-30!50;UBERON:0006238!4.59e-30!50;UBERON:0002616!3.43e-29!49;UBERON:0003056!1.66e-27!49;UBERON:0003080!2.26e-25!40;UBERON:0002020!1.22e-24!34;UBERON:0002780!1.47e-24!39;UBERON:0001890!1.47e-24!39;UBERON:0006240!1.47e-24!39;UBERON:0002791!1.43e-20!29;UBERON:0003528!1.43e-20!29;UBERON:0001893!1.43e-20!29;UBERON:0007811!1.86e-16!86;UBERON:0000956!3.83e-15!21;UBERON:0001869!3.83e-15!21;UBERON:0000203!3.83e-15!21;UBERON:0000153!2.39e-14!94;UBERON:0002619!1.03e-12!17;UBERON:0000025!1.82e-09!114;UBERON:0004111!3.29e-09!122;UBERON:0003076!1.19e-08!12;UBERON:0003057!1.19e-08!12;UBERON:0002021!2.52e-08!10;UBERON:0000411!2.52e-08!10;UBERON:0001950!2.52e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.48e-49,54;UBERON:0001049,2.06e-48,52;UBERON:0005068,2.06e-48,52;UBERON:0006241,2.06e-48,52;UBERON:0007135,2.06e-48,52;UBERON:0001017,2.01e-47,73;UBERON:0001016,6.84e-46,75;UBERON:0002020,4.45e-42,34;UBERON:0000955,1.99e-39,47;UBERON:0006238,1.99e-39,47;UBERON:0002616,1.22e-37,46;UBERON:0002346,1.43e-37,64;UBERON:0003075,1.43e-37,64;UBERON:0007284,1.43e-37,64;UBERON:0004121,4.08e-34,95;UBERON:0000924,4.08e-34,95;UBERON:0006601,4.08e-34,95;UBERON:0003080,6.02e-34,40;UBERON:0003528,6.30e-33,29;UBERON:0002791,6.30e-33,29;UBERON:0001893,6.30e-33,29;UBERON:0002780,2.97e-32,39;UBERON:0001890,2.97e-32,39;UBERON:0006240,2.97e-32,39;UBERON:0010371,8.91e-32,73;UBERON:0003056,2.64e-26,49;UBERON:0010314,2.89e-23,92;UBERON:0000956,3.56e-23,21;UBERON:0001869,3.56e-23,21;UBERON:0000203,3.56e-23,21;UBERON:0002619,4.70e-20,17;UBERON:0002021,1.66e-17,10;UBERON:0000411,1.66e-17,10;UBERON:0001950,1.66e-17,10;UBERON:0000025,5.88e-17,114;UBERON:0004111,3.15e-15,122;UBERON:0003076,4.87e-14,12;UBERON:0003057,4.87e-14,12;UBERON:0002240,5.90e-12,6;UBERON:0005174,5.90e-12,6;UBERON:0001137,5.90e-12,6;UBERON:0011216,1.79e-11,194;UBERON:0002420,1.20e-10,8;UBERON:0007245,1.20e-10,8;UBERON:0010009,1.20e-10,8;UBERON:0010011,1.20e-10,8;UBERON:0000454,1.20e-10,8;UBERON:0001948,2.62e-10,5;UBERON:0002315,2.62e-10,5;UBERON:0000483,6.75e-08,174;UBERON:0000119,1.05e-07,176;UBERON:0002950,1.86e-07,4;UBERON:0001891,1.86e-07,4;UBERON:0009616,1.86e-07,4;UBERON:0010286,1.86e-07,4;UBERON:0002257,4.89e-07,3 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.418531630736908,0,0,0,0,0,0,0.304130793658544,0,0.782391344348039,0.218025156380447,0.659058548203415,0.58328969722285,0,0,0,0,0,0,0,0,0.809265843438391,3.70293685490423,1.90149421051854,0,0,0,0,0,0.599200221036809,1.15265491596466,1.24427534770173,1.4850653216486,0.841299845405528,1.71390590642282,2.20868540951614,1.83736198822431,0.862609239164127,2.75765635983006,0,2.68143409978894,1.38245879930619,1.58263545276233,1.73826522844578,2.08365348222704,1.11673199600552,1.12552522006336,1.98637722109853,3.24091444021034,1.56608848879013,3.72798891650601,0.227178579999552,0.0755715601067855,0.289864488701678,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0.608930956624282,0,0,0,0.125666591329675,0,0.144599356919912,0,0.161766849947409,0,0,0,1.17112318804619,1.04723353406728,0,0,0,0,1.9472783122627,0.915001205637253,2.26177833803156,1.91206752211504,1.53429274398198,2.49345653471472,1.62241263067758,0.101839363850316,0,0,0.210441855886474,0,0.229902104433473,0.900310649026746,0.753524089178575,0.680364991513279,0.640568601424249,0.937017245597288,0.517406741478031,0,0,0,0,0,0.348252166522167,0.205782136407943,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0,0,0,0.134206418760372,3.78521907415429,3.08713837137853,0,0,0,0.232236671860439,0.128867461322093,0,0,0,0,0,0,0,0.38992817423824,0,0,0,0,0.114248512609729,0,0,0.193952487167626,0,0.0632365371242573,0.147610147979602,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0.169745085775188,0,0,0.476087281772027,0.195133647857799,0,0,0.159454768657487,0.327726629431476,0.172684981865896,0,0,0,0,0,1.76605648986571,1.17211686592203,0,0,0,0,0,0.238968797952552,0,1.13230612315533,0.404810701674894,0.292255857911312,0.395287777946524,2.24924921495265,0.141940085208269,0,0.325773918707152,0.164970122972535,0,0.728341908464944,0,0,0,0,0.258428293168221,0,0,0,0,0,1.02131881726136,0.18006109403131,0.129358683782755,0.643011105094777,0.177340233642274,0.891844088010353,0.658196082408484,1.8267896946876,0,0,0,0.16488625294148,0,0.0603129249281559,0.238744688006273,0,0,1.8542530201051,0,0,0,0,0.136694227721025,0,0,0,0,0,0.158167996790568,0.203319467126849,0.216010681643603,0.209088296014469,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0.165458490457098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.386379188064381,1.50145980360946,0,0,0,2.25900737046827,3.22227665555024,2.29158205375759,1.54667864109319,1.37016503954128,2.2661816921691,1.35004500046361,1.80128481289688,1.81256963593682,1.03552062350364,0.103787347584177,0.798049746802062,0.512200817262403,0.486213434136588,0.838452650511929,0.551530525350042,0.44449345560323,0,0,0,0.25347929989024,0,0.280924522409647,0.576226371643824,0.34461281373368,0.476293691283074,0.695305955669133,0.192909220463705,0.412085900803307,0.441596760403192,0.342869252385415,0.354951612318675,0.238436189947321,0.145346416632329,0.188218760830661,0.0846146078916765,0.73171189149109,0,0.407412341537585,0,0.237270036248348,0.492522411877817,0.409231043169689,0.77468420592983,0.192906610981141,0.249810577937946,0.467863216890817,0,0.191288332068843,1.10295709559758,0 | |||
|short_description=p12@Olfm1 | |||
}} |
Revision as of 22:37, 4 August 2015
Short description: | p12@Olfm1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_Olfm1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -16bp_to_ENSMUST00000100244, NM_001038613, NM_001038614, uc008iya.1, uc008iyb.1_5end |
EntrezGene: | 56177 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.87e-26 | 23 |
neuroblast (sensu Vertebrata) | 2.87e-26 | 23 |
neuron | 1.29e-18 | 33 |
neuronal stem cell | 1.29e-18 | 33 |
neuroblast | 1.29e-18 | 33 |
electrically signaling cell | 1.29e-18 | 33 |
electrically responsive cell | 6.06e-15 | 39 |
electrically active cell | 6.06e-15 | 39 |
neural cell | 1.63e-14 | 43 |
ectodermal cell | 4.62e-14 | 44 |
neurectodermal cell | 4.62e-14 | 44 |
neuron of the ventral spinal cord | 4.89e-07 | 3 |
embryonic cell | 6.28e-07 | 70 |