FFCP PHASE1:Mm9::chr4:49858602..49858646,-: Difference between revisions
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{{FFCP|EntrezGene=242443|HGNC=|MCL_coexpression_id=13|UniProt=|association_with_transcript=0bp_to_ENSMUST00000131797_5end|description=CAGE_peak_1_at_Grin3a_5end|id=chr4:49858602..49858646,-|ontology_enrichment_celltype=CL:0000117!1.54e-12!23;CL:0000337!1.54e-12!23;CL:0000221!4.66e-07!44;CL:0000133!4.66e-07!44;CL:0002319!8.05e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,4.88e-13,23;CL:0000337,4.88e-13,23;CL:0000540,7.72e-07,33;CL:0000047,7.72e-07,33;CL:0000031,7.72e-07,33;CL:0000404,7.72e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!9.84e-23!52;UBERON:0005068!9.84e-23!52;UBERON:0006241!9.84e-23!52;UBERON:0007135!9.84e-23!52;UBERON:0001017!3.15e-21!73;UBERON:0005743!3.15e-21!73;UBERON:0000073!6.49e-21!75;UBERON:0001016!6.49e-21!75;UBERON:0000955!6.56e-21!50;UBERON:0006238!6.56e-21!50;UBERON:0002616!2.43e-20!49;UBERON:0002346!1.28e-19!71;UBERON:0003075!1.28e-19!71;UBERON:0007284!1.28e-19!71;UBERON:0000033!2.00e-19!63;UBERON:0004121!1.80e-17!102;UBERON:0000924!1.80e-17!102;UBERON:0006601!1.80e-17!102;UBERON:0002020!1.61e-16!34;UBERON:0003056!7.34e-16!49;UBERON:0003080!7.35e-16!40;UBERON:0002780!3.32e-15!39;UBERON:0001890!3.32e-15!39;UBERON:0006240!3.32e-15!39;UBERON:0002791!7.30e-13!29;UBERON:0003528!7.30e-13!29;UBERON:0001893!7.30e-13!29;UBERON:0000153!1.03e-09!94;UBERON:0007811!4.85e-09!86;UBERON:0000956!3.24e-08!21;UBERON:0001869!3.24e-08!21;UBERON:0000203!3.24e-08!21;UBERON:0002619!3.94e-08!17;UBERON:0000468!1.03e-07!333;UBERON:0003076!1.25e-07!12;UBERON:0003057!1.25e-07!12;UBERON:0002021!4.22e-07!10;UBERON:0000411!4.22e-07!10;UBERON:0001950!4.22e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.22e-24,54;UBERON:0001049,8.85e-23,52;UBERON:0005068,8.85e-23,52;UBERON:0006241,8.85e-23,52;UBERON:0007135,8.85e-23,52;UBERON:0001017,3.49e-22,73;UBERON:0001016,4.78e-21,75;UBERON:0002346,1.98e-19,64;UBERON:0003075,1.98e-19,64;UBERON:0007284,1.98e-19,64;UBERON:0000955,4.84e-18,47;UBERON:0006238,4.84e-18,47;UBERON:0002616,2.34e-17,46;UBERON:0002020,2.45e-17,34;UBERON:0004121,2.02e-16,95;UBERON:0000924,2.02e-16,95;UBERON:0006601,2.02e-16,95;UBERON:0010371,1.10e-15,73;UBERON:0003080,5.01e-15,40;UBERON:0002780,3.10e-14,39;UBERON:0001890,3.10e-14,39;UBERON:0006240,3.10e-14,39;UBERON:0003056,8.06e-14,49;UBERON:0003528,9.04e-13,29;UBERON:0002791,9.04e-13,29;UBERON:0001893,9.04e-13,29;UBERON:0010314,4.17e-10,92;UBERON:0002021,5.71e-09,10;UBERON:0000411,5.71e-09,10;UBERON:0001950,5.71e-09,10;UBERON:0003076,1.06e-08,12;UBERON:0003057,1.06e-08,12;UBERON:0002619,1.81e-08,17;UBERON:0002420,9.64e-08,8;UBERON:0007245,9.64e-08,8;UBERON:0010009,9.64e-08,8;UBERON:0010011,9.64e-08,8;UBERON:0000454,9.64e-08,8;UBERON:0002240,3.95e-07,6;UBERON:0005174,3.95e-07,6;UBERON:0001137,3.95e-07,6;UBERON:0000956,4.29e-07,21;UBERON:0001869,4.29e-07,21;UBERON:0000203,4.29e-07,21|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.550640256485045,1.56478268869608,0.872100625521786,0.219686182734472,0.58328969722285,0.699932108126813,1.43752564364972,0,0,0,0,0,0,13.3528864167335,11.1088105647127,15.2119536841483,0.338844532069132,0,0,0,0,1.19840044207362,1.92109152660777,0.414758449233911,0.540023753326763,0.841299845405528,17.7103610330358,18.7738259808871,4.40966877173835,2.97120960156533,0.919218786610021,13.2139057199266,11.3641730895817,13.5173749265494,15.2988093767025,15.186948838,20.3156214517136,9.21303896704557,9.56696437053856,7.79271063661732,29.7574871328404,30.6099113718071,17.7079473534036,0.302904773332736,0.453429360640713,0.289864488701678,0,0,0.539703191637817,0,0,0.421333260395256,0,0,0,1.97180787687353,0,0,0,0,0,0,0,0,0.593768556259299,1.56136794089522,0.608930956624282,0.461230994512117,0.452167921657868,0.470354828542819,0.125666591329675,0,0,0,0.970601099684455,0.220841518460394,0.969750506270444,3.72783522436244,3.22058876712702,4.60782754989601,0,0,0,0,12.7322043494099,3.66000482254901,7.79056983099759,8.34356736922927,6.64860189058859,11.4283424507758,11.356888414743,0.305518091550949,0.124406970610093,0,0.210441855886474,0.260240885925407,0.459804208866946,1.62055916824814,1.05493372485001,1.42876648217788,0.768682321709099,1.12442069471675,2.58703370739016,0,2.45837904218165,4.22282697993477,3.72632745126877,3.05851974148158,0.696504333044333,0.823128545631774,1.79130840136644,0,0,0,1.44988040774851,0.469052119962192,0.720248245844059,0.23674473558521,0.393528463494808,0.154267112887378,0.232533944750408,0,0,0.822799249567402,0,0.56748166682099,0.438599962275997,0.439100230582101,0,7.78072809687271,11.216602749342,0,0.264450566663544,0.639864751605702,1.62565670302307,0.128867461322093,0,0.444756087689741,1.14135375667535,0,0.329397909448022,1.25667604400135,0.397912944082302,0.38992817423824,0,1.29682829924817,1.59313018603494,0.189667900953082,1.14248512609729,1.1270773567308,0.203651327845314,0.775809948670503,0.631222379012867,0.505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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:242443 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000131797_5end | |||
|cluster_id=chr4:49858602..49858646,- | |||
|description=CAGE_peak_1_at_Grin3a_5end | |||
|id=chr4:49858602..49858646,- | |||
|ontology_enrichment_celltype=CL:0000117!1.54e-12!23;CL:0000337!1.54e-12!23;CL:0000221!4.66e-07!44;CL:0000133!4.66e-07!44;CL:0002319!8.05e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.88e-13,23;CL:0000337,4.88e-13,23;CL:0000540,7.72e-07,33;CL:0000047,7.72e-07,33;CL:0000031,7.72e-07,33;CL:0000404,7.72e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!9.84e-23!52;UBERON:0005068!9.84e-23!52;UBERON:0006241!9.84e-23!52;UBERON:0007135!9.84e-23!52;UBERON:0001017!3.15e-21!73;UBERON:0005743!3.15e-21!73;UBERON:0000073!6.49e-21!75;UBERON:0001016!6.49e-21!75;UBERON:0000955!6.56e-21!50;UBERON:0006238!6.56e-21!50;UBERON:0002616!2.43e-20!49;UBERON:0002346!1.28e-19!71;UBERON:0003075!1.28e-19!71;UBERON:0007284!1.28e-19!71;UBERON:0000033!2.00e-19!63;UBERON:0004121!1.80e-17!102;UBERON:0000924!1.80e-17!102;UBERON:0006601!1.80e-17!102;UBERON:0002020!1.61e-16!34;UBERON:0003056!7.34e-16!49;UBERON:0003080!7.35e-16!40;UBERON:0002780!3.32e-15!39;UBERON:0001890!3.32e-15!39;UBERON:0006240!3.32e-15!39;UBERON:0002791!7.30e-13!29;UBERON:0003528!7.30e-13!29;UBERON:0001893!7.30e-13!29;UBERON:0000153!1.03e-09!94;UBERON:0007811!4.85e-09!86;UBERON:0000956!3.24e-08!21;UBERON:0001869!3.24e-08!21;UBERON:0000203!3.24e-08!21;UBERON:0002619!3.94e-08!17;UBERON:0000468!1.03e-07!333;UBERON:0003076!1.25e-07!12;UBERON:0003057!1.25e-07!12;UBERON:0002021!4.22e-07!10;UBERON:0000411!4.22e-07!10;UBERON:0001950!4.22e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.22e-24,54;UBERON:0001049,8.85e-23,52;UBERON:0005068,8.85e-23,52;UBERON:0006241,8.85e-23,52;UBERON:0007135,8.85e-23,52;UBERON:0001017,3.49e-22,73;UBERON:0001016,4.78e-21,75;UBERON:0002346,1.98e-19,64;UBERON:0003075,1.98e-19,64;UBERON:0007284,1.98e-19,64;UBERON:0000955,4.84e-18,47;UBERON:0006238,4.84e-18,47;UBERON:0002616,2.34e-17,46;UBERON:0002020,2.45e-17,34;UBERON:0004121,2.02e-16,95;UBERON:0000924,2.02e-16,95;UBERON:0006601,2.02e-16,95;UBERON:0010371,1.10e-15,73;UBERON:0003080,5.01e-15,40;UBERON:0002780,3.10e-14,39;UBERON:0001890,3.10e-14,39;UBERON:0006240,3.10e-14,39;UBERON:0003056,8.06e-14,49;UBERON:0003528,9.04e-13,29;UBERON:0002791,9.04e-13,29;UBERON:0001893,9.04e-13,29;UBERON:0010314,4.17e-10,92;UBERON:0002021,5.71e-09,10;UBERON:0000411,5.71e-09,10;UBERON:0001950,5.71e-09,10;UBERON:0003076,1.06e-08,12;UBERON:0003057,1.06e-08,12;UBERON:0002619,1.81e-08,17;UBERON:0002420,9.64e-08,8;UBERON:0007245,9.64e-08,8;UBERON:0010009,9.64e-08,8;UBERON:0010011,9.64e-08,8;UBERON:0000454,9.64e-08,8;UBERON:0002240,3.95e-07,6;UBERON:0005174,3.95e-07,6;UBERON:0001137,3.95e-07,6;UBERON:0000956,4.29e-07,21;UBERON:0001869,4.29e-07,21;UBERON:0000203,4.29e-07,21 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.550640256485045,1.56478268869608,0.872100625521786,0.219686182734472,0.58328969722285,0.699932108126813,1.43752564364972,0,0,0,0,0,0,13.3528864167335,11.1088105647127,15.2119536841483,0.338844532069132,0,0,0,0,1.19840044207362,1.92109152660777,0.414758449233911,0.540023753326763,0.841299845405528,17.7103610330358,18.7738259808871,4.40966877173835,2.97120960156533,0.919218786610021,13.2139057199266,11.3641730895817,13.5173749265494,15.2988093767025,15.186948838,20.3156214517136,9.21303896704557,9.56696437053856,7.79271063661732,29.7574871328404,30.6099113718071,17.7079473534036,0.302904773332736,0.453429360640713,0.289864488701678,0,0,0.539703191637817,0,0,0.421333260395256,0,0,0,1.97180787687353,0,0,0,0,0,0,0,0,0.593768556259299,1.56136794089522,0.608930956624282,0.461230994512117,0.452167921657868,0.470354828542819,0.125666591329675,0,0,0,0.970601099684455,0.220841518460394,0.969750506270444,3.72783522436244,3.22058876712702,4.60782754989601,0,0,0,0,12.7322043494099,3.66000482254901,7.79056983099759,8.34356736922927,6.64860189058859,11.4283424507758,11.356888414743,0.305518091550949,0.124406970610093,0,0.210441855886474,0.260240885925407,0.459804208866946,1.62055916824814,1.05493372485001,1.42876648217788,0.768682321709099,1.12442069471675,2.58703370739016,0,2.45837904218165,4.22282697993477,3.72632745126877,3.05851974148158,0.696504333044333,0.823128545631774,1.79130840136644,0,0,0,1.44988040774851,0.469052119962192,0.720248245844059,0.23674473558521,0.393528463494808,0.154267112887378,0.232533944750408,0,0,0.822799249567402,0,0.56748166682099,0.438599962275997,0.439100230582101,0,7.78072809687271,11.216602749342,0,0.264450566663544,0.639864751605702,1.62565670302307,0.128867461322093,0,0.444756087689741,1.14135375667535,0,0.329397909448022,1.25667604400135,0.397912944082302,0.38992817423824,0,1.29682829924817,1.59313018603494,0.189667900953082,1.14248512609729,1.1270773567308,0.203651327845314,0.775809948670503,0.631222379012867,0.505892296994058,0.442830443938806,0.941992367048249,0.616985819609003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32643988239339,0.651859905768103,0.169745085775188,0,0,0,0.195133647857799,0.157635144106191,0,0.637819074629948,0.327726629431476,0.345369963731791,0,0,0,0,0,11.3990918891332,13.1277088983268,0,0.252470927204373,0,0,0,0,0.222798674082394,0.283076530788832,0,0,0,5.14114106274891,0.141940085208269,1.78065603667255,1.46598263418218,0.329940245945071,0,1.45668381692989,2.11626489875326,1.13163047853539,0.885905678642318,1.84461088766356,0.516856586336442,0,1.06949213515416,0,0,0,3.40439605753788,0.720244376125241,0.258717367565509,0.857348140126369,2.30542303734956,2.31879462882692,2.30368628842969,3.04464949114599,0,0,0,0,0.322928853391811,0.603129249281559,0.119372344003136,0.164140899745061,0.291480836629851,10.198391610578,0,0.619160603889667,0,0,0,0,0,0,0,0,0.949007980743406,1.82987520414164,1.40406943068342,1.25452977608681,1.31017538247707,1.21377911746339,0.991841468704031,0.523511883968059,0.518459893167171,0,0,0.897099276263873,0.496375471371293,0.583353565032143,0.516639293910924,0.337912250981556,0.234714477291508,0.13020438484395,0.209718688851422,0,0,0,1.82452693761148,0.924398614483445,0.25984164595559,0.358053391334963,0,0,0,0,0,0,0,0.0962118416403295,0,0,0,0.0897138566094757,0,0,0,0.36630324853453,0.214368379079066,0,15.2482997506608,13.8097570952153,10.8850147553485,11.5141632170271,12.3314853558716,7.55393897389701,10.8003600037089,7.20513925158753,3.62513927187364,4.14208249401456,0.207574695168353,2.39414924040619,1.70733605754134,2.91728060481953,3.14419743941973,4.41224420280034,3.55594764482584,3.09052585858341,3.20919209591815,3.53776096469316,2.28131369901216,4.14977951049368,2.99652823903624,4.09760975391163,2.46972516509137,0.476293691283074,4.51948871184936,3.47236596834669,4.53294490883637,5.00476328456951,4.80016953339582,2.30718548007139,1.90748951957857,2.76158191601424,3.01150017329058,3.63842813934209,3.65855945745545,1.8414879800649,3.39510284614654,4.48913817326191,3.32178050747688,3.74317033027141,1.63692417267876,3.25367366490529,3.08650577569826,5.74564329257276,3.50897412668113,3.43793686477277,1.53030665655075,1.10295709559758,1.39120701372253 | |||
|short_description=p1@Grin3a | |||
}} |
Revision as of 14:11, 5 August 2015
Short description: | p1@Grin3a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Grin3a_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000131797_5end |
EntrezGene: | 242443 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.88e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.88e-13 | 23 |
neuron | 7.72e-07 | 33 |
neuronal stem cell | 7.72e-07 | 33 |
neuroblast | 7.72e-07 | 33 |
electrically signaling cell | 7.72e-07 | 33 |