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MCL coexpression mm9:121

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:10800785..10800821,-p3@Grm1
Mm9::chr10:69169067..69169072,+p44@Ank3
Mm9::chr10:69169074..69169130,+p4@Ank3
Mm9::chr11:114953151..114953171,+p3@Rab37
Mm9::chr11:118063929..118063943,-p9@Cyth1
Mm9::chr11:41993156..41993185,-p@chr11:41993156..41993185
-
Mm9::chr11:41993192..41993227,-p@chr11:41993192..41993227
-
Mm9::chr11:41995595..41995606,-p8@Gabra1
Mm9::chr11:41996426..41996437,-p12@Gabra1
Mm9::chr11:60835625..60835663,+p3@Kcnj12
Mm9::chr11:61267018..61267055,-p@chr11:61267018..61267055
-
Mm9::chr11:76391508..76391521,-p25@Abr
Mm9::chr11:76391527..76391550,-p26@Abr
Mm9::chr11:78136467..78136498,+p10@Aldoc
Mm9::chr11:87394547..87394569,+p2@Sept4
Mm9::chr11:97408516..97408538,-p@chr11:97408516..97408538
-
Mm9::chr12:109648835..109648872,+p8@Eml1
Mm9::chr12:11443304..11443315,-p3@Vsnl1
Mm9::chr12:91050907..91050928,+p2@LOC100505240
p3@Nrxn3
Mm9::chr13:109906367..109906396,+p20@Pde4d
Mm9::chr13:109906401..109906412,+p46@Pde4d
Mm9::chr14:50403002..50403069,-p1@3632451O06Rik
Mm9::chr15:22478819..22478837,+p3@Cdh18
Mm9::chr15:76351334..76351349,+p@chr15:76351334..76351349
+
Mm9::chr15:78034658..78034669,-p3@Pvalb
Mm9::chr15:78034859..78034880,-p4@Pvalb
Mm9::chr15:82086756..82086763,+p4@1500009C09Rik
Mm9::chr15:89354121..89354141,-p1@ENSMUST00000155610
Mm9::chr15:89354138..89354174,+p@chr15:89354138..89354174
+
Mm9::chr16:17489732..17489776,+p1@Aifm3
Mm9::chr16:17489784..17489796,+p4@Aifm3
Mm9::chr16:41533441..41533473,+p5@Lsamp
Mm9::chr17:35153521..35153549,+p2@D17H6S56E-3
Mm9::chr18:31476636..31476645,-p7@Rit2
Mm9::chr18:36124742..36124764,+p2@Psd2
Mm9::chr1:173310275..173310297,+p@chr1:173310275..173310297
+
Mm9::chr1:180728527..180728558,+p4@Kif26b
Mm9::chr1:180728579..180728598,+p5@Kif26b
Mm9::chr1:189475390..189475413,+p@chr1:189475390..189475413
+
Mm9::chr1:66514486..66514568,+p1@Unc80
Mm9::chr1:78306952..78306961,+p3@Sgpp2
Mm9::chr1:78306966..78306975,+p2@Sgpp2
Mm9::chr1:83404605..83404615,-p5@Sphkap
Mm9::chr2:135485029..135485093,+p1@Plcb4
Mm9::chr2:25284237..25284250,+p3@Abca2
Mm9::chr2:52414059..52414091,-p1@Cacnb4
Mm9::chr2:52414098..52414121,-p4@Cacnb4
Mm9::chr2:70401375..70401387,+p10@Gad1
Mm9::chr3:106904185..106904199,+p3@Kcna2
Mm9::chr3:114607131..114607142,+p7@Olfm3
Mm9::chr3:114607156..114607183,+p4@Olfm3
Mm9::chr3:115711293..115711320,+p3@Extl2
Mm9::chr3:58809735..58809787,+p1@Med12l
Mm9::chr4:123204925..123204955,-p4@Macf1
Mm9::chr4:123363950..123363972,-p@chr4:123363950..123363972
-
Mm9::chr4:133053687..133053703,-p4@Trnp1
Mm9::chr4:155068564..155068632,+p2@B930041F14Rik
Mm9::chr4:43532917..43532931,-p8@Tpm2
Mm9::chr4:98213322..98213346,+p10@Inadl
Mm9::chr4:98213353..98213380,+p9@Inadl
Mm9::chr4:98213387..98213400,+p14@Inadl
Mm9::chr4:98213401..98213430,+p6@Inadl
Mm9::chr4:98213437..98213454,+p13@Inadl
Mm9::chr4:98213488..98213496,+p19@Inadl
Mm9::chr4:98213588..98213600,+p15@Inadl
Mm9::chr4:98213610..98213650,+p8@Inadl
Mm9::chr5:121459010..121459026,-p@chr5:121459010..121459026
-
Mm9::chr5:121459642..121459653,-p8@Rph3a
Mm9::chr5:151062731..151062836,+p2@Fry
Mm9::chr5:27231168..27231211,+p6@Dpp6
Mm9::chr5:27231436..27231454,+p13@Dpp6
Mm9::chr6:21165331..21165353,+p3@Kcnd2
Mm9::chr7:114514259..114514362,+p1@Syt9
Mm9::chr7:147080756..147080765,+p4@Kndc1
Mm9::chr7:147080886..147080947,+p3@Kndc1
Mm9::chr7:51846256..51846275,+p@chr7:51846256..51846275
+
Mm9::chr7:51846276..51846287,+p@chr7:51846276..51846287
+
Mm9::chr7:51857960..51857971,+p@chr7:51857960..51857971
+
Mm9::chr7:51858002..51858013,+p@chr7:51858002..51858013
+
Mm9::chr7:53651809..53651909,+p1@Kcnc1
Mm9::chr7:53651910..53651927,+p3@Kcnc1
Mm9::chr7:70589627..70589648,+p3@Otud7a
Mm9::chr7:99383645..99383654,+p31@Dlg2
Mm9::chr8:107873195..107873269,+p@chr8:107873195..107873269
+
Mm9::chr8:112692104..112692121,-p1@Calb2
Mm9::chr8:122159367..122159378,-p4@Kcng4
Mm9::chr8:122159391..122159405,-p3@Kcng4
Mm9::chr8:122159411..122159436,-p1@Kcng4
Mm9::chr8:12915677..12915690,+p17@Mcf2l
Mm9::chr8:24085318..24085354,+p5@Ank1
Mm9::chr9:62384774..62384793,-p4@Coro2b
Mm9::chr9:73816477..73816516,-p@chr9:73816477..73816516
-
Mm9::chr9:73816838..73816852,-p@chr9:73816838..73816852
-
Mm9::chr9:73816906..73816916,-p@chr9:73816906..73816916
-
Mm9::chr9:86775482..86775494,-p2@Snap91
Mm9::chr9:86775533..86775547,-p4@Snap91
Mm9::chrX:154481337..154481357,-p4@Cnksr2
Mm9::chrX:35917464..35917511,-p5@Cul4b


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


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