Personal tools

Coexpression cluster:C705: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Coexpression_clusters
{{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620032815069762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225296951675135,0,0,0,0,0,0.0975809997847489,0.0211437342385579,0,0,0,0,0,0,0,0,0,0.0385280079017836,0,0,0,0,0,0,0,0.128639412800133,0,0.0695293501927681,0,0.152535577680334,0.402401944384513,0.656786871701751,0.67762977360133,0.0430704948946057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115967372264001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636501778654779,0,0,0,0,0,0,0.177546444600632,0,0,0,0,0,0,0.055118134803774,0,0.0557243212092205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254120022070344,0.261038495240818,0,0,0,0,0,0.0377058967400814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0528027736253869,0.0539356558948951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137778694054377,0.0500030232022126,0.224811526771169,0,0.105890785834578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167122600236633,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160233527741937,0,0,0.157407972322813,0,0.0418542907017061,0.096169875949207,0,0,0,0,0,0,0.0270351810347199,0,0.214455838206723,0.104133196045535,0.420855444885096,0,0.36883462809276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0417038986531836,0.250682963288844,0.279901319077359,0.0392810691025314,0.421755973572414,0,0,0,0,0,0,0.103003290575171,0.0890788809625826,0,0,0,0.0285589446518912,0,0,0,0,0.118671766513265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.84438548751448,0,0,0,0,0,0,0,0,0,0,0,0.076549908334415,0,0,0,0,0,0,0,0,0,0.0581752393062885,0,0.0285677922263843,0.317951128701987,0,0,0,0,0,0,0,0,0,0.0190904186583736,0,0,0,0,0.0816590494793475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|full_id=C705_small_cerebellum_parietal_occipital_temporal_amygdala_olfactory|id=C705|ontology_enrichment_celltype=|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0001049!9.98e-77!56;UBERON:0005068!9.98e-77!56;UBERON:0006241!9.98e-77!56;UBERON:0007135!9.98e-77!56;UBERON:0000073!1.26e-76!53;UBERON:0002616!1.26e-76!53;UBERON:0000955!2.67e-68!68;UBERON:0006238!2.67e-68!68;UBERON:0003528!3.01e-64!34;UBERON:0002020!3.01e-64!34;UBERON:0001017!5.02e-63!81;UBERON:0001016!1.01e-62!89;UBERON:0002780!8.61e-62!41;UBERON:0001890!8.61e-62!41;UBERON:0003080!8.61e-62!41;UBERON:0006240!8.61e-62!41;UBERON:0001893!4.61e-59!34;UBERON:0002791!7.63e-58!32;UBERON:0001869!9.48e-58!32;UBERON:0002346!1.75e-53!86;UBERON:0002619!4.49e-52!22;UBERON:0003075!4.57e-50!82;UBERON:0007284!4.57e-50!82;UBERON:0000956!1.54e-45!25;UBERON:0000203!1.54e-45!25;UBERON:0001950!9.31e-45!20;UBERON:0003056!1.17e-39!61;UBERON:0010371!8.08e-38!104;UBERON:0004121!2.50e-32!171;UBERON:0000924!2.50e-32!171;UBERON:0006601!2.50e-32!171;UBERON:0010314!3.92e-30!132;UBERON:0007023!1.79e-29!114;UBERON:0011216!9.70e-23!223;UBERON:0000125!7.92e-20!9;UBERON:0002308!7.92e-20!9;UBERON:0000025!8.69e-17!192;UBERON:0000200!3.08e-16!6;UBERON:0003076!1.07e-15!15;UBERON:0003057!1.07e-15!15;UBERON:0002680!1.80e-15!9;UBERON:0001895!1.80e-15!9;UBERON:0010092!1.80e-15!9;UBERON:0004733!2.09e-15!12;UBERON:0002028!2.09e-15!12;UBERON:0007277!2.09e-15!12;UBERON:0002420!4.99e-15!9;UBERON:0007245!4.99e-15!9;UBERON:0010009!4.99e-15!9;UBERON:0010011!4.99e-15!9;UBERON:0000454!4.99e-15!9;UBERON:0004732!3.82e-14!13;UBERON:0001871!8.27e-14!6;UBERON:0009663!1.54e-13!7;UBERON:0001872!2.42e-13!5;UBERON:0000349!3.77e-13!5;UBERON:0001870!1.21e-12!3;UBERON:0004111!7.95e-12!240;UBERON:0000988!1.18e-11!3;UBERON:0000064!8.05e-11!218;UBERON:0002298!3.29e-10!6;UBERON:0000477!6.64e-10!373;UBERON:0001954!1.97e-09!2;UBERON:0003022!1.97e-09!2;UBERON:0002421!1.97e-09!2;UBERON:0002600!1.97e-09!2;UBERON:0000369!2.73e-09!4;UBERON:0002435!2.73e-09!4;UBERON:0000204!2.73e-09!4;UBERON:0010082!2.73e-09!4;UBERON:0002702!3.47e-09!2;UBERON:0000007!8.35e-09!2;UBERON:0002771!8.69e-09!2;UBERON:0002148!1.97e-08!2;UBERON:0006331!1.97e-08!2;UBERON:0009662!1.97e-08!2;UBERON:0000483!2.65e-08!306;UBERON:0000119!3.81e-08!309;UBERON:0002021!5.48e-08!5;UBERON:0002037!5.16e-07!6;UBERON:0006215!5.16e-07!6|tfbs_overrepresentation=0.471217,0.214819,0.879355,0.17763,0.589915,0.39346,0.161246,0.361586,0.124595,0.0989254,0.451521,0.272137,0.566914,0.416434,0.474741,0.225545,0.455486,0.33864,0.195229,0.367081,0.566623,0.433861,0.289745,0.328896,0.156203,0.621218,0.6093,0.316422,0.462463,0.324351,0.60045,0.383909,0.0701981,0.60702,0.240705,0.0494176,0.49822,0.161109,0.401261,0.241288,0.333574,0.0948711,0.45309,0.556678,0.4028,0.137274,0.143613,0.5512,0.376187,0.403572,0.487923,0.199733,0.25248,0.0590045,0.587909,0.145034,0.365371,0.615815,0.278371,0.359999,0.112625,0.47656,0.368626,0.270903,0.201051,0.187169,0.823983,0.21928,0.302334,0.518642,0.851205,0.244449,0.31134,0.39862,0.0295705,0.0667328,0.333615,0.163653,0.140878,0.028696,0.33106,0.642796,0.159466,0.386132,0.747777,0.32306,0.233574,0.608587,0.323445,0.228338,0.30137,0.184079,0.330331,0.176449,0.300245,0.386636,0.27774,0.486857,0.32249,0.0412751,0.210864,0.370723,0.457743,0.140224,0.628115,0.153935,0.242212,0.491239,0.463641,0.357207,0.553583,0.12921,0.476893,0.0688872,0.347453,0.128327,0.078906,0.208078,0.450497,0.295491,0.517848,0.619702,0.453306,0.30145,0.350778,0.541029,0.31632,0.0578734,0.297092,0.439984,0.217846,0.267382,0.209962,0.0880761,0.415939,0.367204,0.235287,0.20364,0.125753,0.0157274,0.0880383,0.420771,0.598376,0.492572,0.299484,0.249748,0.34046,0.296684,0.146902,0.402572,0.591723,0.462287,0.549447,0.102162,0.160199,0.393597,0.267144,0.64551,0.191303,0.128228,0.644286,0.330036,0.391099,0.47254,0.0409268,0.384569,0.150767,0.42014,0.151906,0.440968,0.547191,0.119512,0.241197,0.199584,0.283397,0.314489,0.453841,0.551872,0.544447,0.135096,0.499382,0.407019,0.1052,0.388148,0.26386,0.397155,0.554525,0.151275,0.292504,0.533511,0.364488,0.563758,0.408265,0.278692,0.380075,0.175409,0.278148,0.2202,0.244357,0.371655,0.312144,0.220572,0.11774,0.221255,0.443906,0.699178,0.721548,0.482523,0.603149,0.544248,0.171226,0.0728294,0.403444,0.380714,0.776697,0.523257,0.512017,0.346644,0.229154,0.352576,0.457885,0.555855,0.148435,0.504557,0.26429,0.418124,0.450065,0.302031,0.220755,0.218905,0.655088,0.856746,0.157148,0.272652,0.331923,0.323829,0.175943,0.705107,0.510379,0.619886,0.553305,0.511997,0.339219,0.29319,0.390108,0.444902,0.2883,0.37721,0.556506,0.392161,0.499877,0.559161,0.560411,0.338133,0.338313,0.501355,0.364764,0.228206,0.250606,0.863364,0.225616,0.536975,0.510085,0.42207,0.131069,0.286927,0.287225,0.320454,0.395048,0.26954,0.374902,0.230131,0.328778,0.214584,0.303915,0.143717,0.427561,0.682305,0.734431,0.729461,0.98242,0.642921,0.969066,0.893939,0.804934,0.757729,0.702643,0.906008,0.84612,0.435395,0.933104,0.799333,0.598243,0.474852,0.809703,0.978199,0.719052,0.748952,0.875317,0.868042,0.862662,0.877899,0.56366,0.835136,0.551649,0.889909,0.372543,0.799563,0.626667,0.652123,0.849283,0.710324,0.785988,0.57812,0.947252,0.552779,0.883399,0.494177,0.689578,0.726496,0.762343,0.738242,0.782237,0.636454,0.939096,0.505298,0.736783,0.446139,0.858493,0.748322,0.907219,0.857437,0.365738,0.403313,0.261984,0.672843,0.846304,0.968172,0.723818,0.553083,0.866737,0.684538,0.644186,0.724252,0.660139,0.198961,0.817416,0.810783,0.717546,0.751975,0.768432,0.165793,0.947831,0.681283,0.733607,0.724309,0.509776,0.242412,0.261851,0.558359,0.702842,0.514458,0.460675,0.358412,0.458643,0.612962,0.95956,0.686543,0.259382,0.776996,0.698428,0.168585,0.267123,0.646646,0.410432,0.690075,0.528117,0.752542,0.814031,0.731652,0.744742,0.470106,0.486346,0.0107661,0.487649,0.893452,0.64498,0.805978,0.585524,0.493323,0.650958,0.37434,0.490645,0.887322,0.945333,0.522933,0.80456,0.465124,0.466948,0.579708,0.848572,0.685399,0.914924,0.687343,0.484549,0.173671,0.44557,0.698893,0.439611,0.339766,0.957599,0.751136,0.738054,0.81451,0.768769,0.767729,0.881912,0.768465,0.948182,0.738106,0.704226,0.831656,0.641584,0.875469,0.635261,0.836058,0.917996,0.658277,0.602995,0.79801,0.791968,0.899656,0.714812,0.80942,0.22201,0.733383,0.457451,0.698176,0.947134,0.50122,0.66389,0.555544,0.652563,0.5685,0.311649,0.217794,0.949092,0.552064,0.818507,0.599017,0.821362,0.924071,0.874303,0.983353,0.906935,0.781339,0.251202,0.204811,0.574916,0.277351,0.211138,0.463905,0.636245,0.597836,0.678249,0.412346,0.573299,0.378006,0.396458,0.163107,0.764444,0.417769,0.439775,0.363763,0.137649,0.228487,0.301978,0.0697395,0.425056,0.730955,0.588493,0.173364,0.524508,0.385403,0.357093,0.314111,0.304239,0.501726,0.364391,0.164245,0.0154717,0.410038,0.424876,0.611227,0.577291,0.817475,0.185412,0.292584,0.241259,0.552678,0.376171,0.628677,0.801847,0.581293,0.432877,0.204362,0.179232,0.59034,0.158268,0.421174,0.538511,0.557692,0.523662,0.307117,0.329886,0.0442684,0.634444,0.364197,0.72409,0.0191144,0.533842,0.455832,0.613634,0.11496,0.431176,0.16655,0.193564,0.241135,0.485778,0.282952,0.336348,0.502482,0.409859,0.3162,0.205223,0.0460028,0.78809,0.446171,0.0571331,0.238008,0.613931,0.63087,0.28407,0.270403,0.506384,0.576327,0.20218,0.277268,0.206495,0.156878,0.131172,0.14666,0.691408,0.526119,0.592511,0.181697,0.536572,0.552112,0.125872,0.820124,0.26114,0.148776,0.218077,0.639006,0.407026,0.369392,0.372635,0.341782,0.109594,0.827265,0.464519,0.146569,0.306536,0.2026,0.463266,0.689781,0.624253,0.569634,0.429963,0.865199,0.661258,0.741544,0.271458,0.531088,0.28944,0.553806,0.0833165,0.472317,0.456705,0.519136,0.454574,0.311108,0.772787,0.74172,0.176206,0.328845,0.905478,0.434667,0.275592,0.370302,0.423311,0.430918,0.496231,0.68772,0.191779,0.342148,0.185619,0.22531,0.269526,0.325191,0.463285,0.129293,0.265309,0.726892,0.451089,0.797604,0.62464,0.396392,0.398163,0.57477,0.543378,0.614864,0.21115,0.177201,0.864222,0.222137,0.537466,0.173825,0.25619,0.269303,0.747474,0.134915,0.41544,0.53696,0.750566,0.985027,0.60346,0.626406,0.367706,0.24338,0.369039,0.183457,0.331712,0.602014,0.269743,0.170487,0.373185,0.252836,0.273665,0.486464,0.142454,0.433971,0.168221,0.198836,0.384455,0.323114,0.53094,0.358209,0.632962,0.2098,0.656252,0.271015,0.741362,0.483796,0.579941,0.626557,0.348572,0.212629,0.5322,0.811327,0.481905,0.228099,0.572363,0.474483,0.770533,0.492146,0.258012,0.319962,0.220039,0.46386,0.47954,0.336233,0.490242,0.526092,0.577247,0.445882,0.645068,0.68606,0.743146,0.397656,0.0487855,0.800228,0.3814,0.380019,0.562342,0.536245,0.328739,0.706691,0.681987,0.454346,0.343245,0.334283,0.354528,0.381187,0.0983715,0.520619,0.316238,0.8665,0.518441,0.566658,0.287927,0.558692,0.493205,0.775746,0.780348,0.216238,0.679054,0.544315,0.258641,0.283009,0.348247,0.540597,0.136714,0.357219,0.429975,0.162833,0.436568,0.6371,0.549983,0.688135,0.618513,0.651105,0.609109,0.901345,0.842531,0.891612,0.907691,0.585223,0.867785,0.833743,0.875523,0.853255,0.86136,0.917408,0.89594,0.580787,0.861874,0.931329,0.937789,0.209264,0.79482,0.989525,0.911245,0.643151,0.335769,0.341456,0.310939,0.738101,0.770758,0.622452,0.59803,0.744549,0.161892,0.709549,0.742836,0.855325,0.481994,0.487751,0.463296,0.697237,0.906181,0.672279,0.716098,0.862424,0.438237,0.48642,0.505907,0.652367,0.781671,0.758679,0.767415,0.557916,0.734537,0.925383,0.85977,0.79793,0.934058,0.597358,0.225703,0.60171,0.418335,0.69452,0.891417,0.82061,0.575676,0.492827,0.456337,0.880413,0.332595,0.779104,0.826697,0.511141,0.649529,0.40092,0.737536,0.963332,0.779093,0.550992,0.734659,0.563353,0.978344,0.877518,0.786509,0.788956,0.986014,0.809584,0.976939,0.582883,0.948059,0.774231,0.812927,0.6337,0.884174,0.63393,0.709586,0.968694,0.672553,0.600176,0.910099,0.450113,0.823842,0.518298,0.585938,0.294093,0.781691,0.486758,0.537197,0.481306,0.845998,0.795747,0.877888,0.837908,0.953143,0.589362,0.538693,0.659319,0.597492,0.721269,0.848179,0.90621,0.822662,0.724248,0.770316,0.767874,0.668362,0.84388,0.430372,0.764949,0.75847,0.858371,0.941436,0.321369,0.855335,0.702099,0.770695,0.630288,0.541383,0.584171,0.572748,0.917308,0.711846,0.769805,0.914798,0.384928,0.423339,0.725136,0.870027,0.721089,0.840557,0.368502,0.856567,0.925724,0.83142,0.494363,0.585886,0.176809,0.58251,0.801806,0.950502,0.759745,0.571298,0.601374,0.539864,0.277046,0.726556,0.601143,0.128187,0.568809,0.698272,0.565829,0.258106,0.707973,0.508189,0.571738,0.509337,0.628762,0.606566,0.31447,0.330278,0.51649,0.687263,0.566702,0.6928,0.605605,0.685175,0.54658,0.577137,0.631563,0.635468,0.812179,0.774213,0.626057,0.587554,0.562698,0.409315,0.589309,0.124134,0.324178,0.411267,0.547634,0.642717,0.729345,0.300771,0.430043,0.607274,0.679503,0.634269,0.24333,0.607473,0.351762,0.381251,0.467353,0.647425,0.507195,0.646558,0.522546,0.145314,0.239319,0.193007,0.170131,0.714054,0.593672,0.51476,0.490026,0.400838,0.340023,0.36823,0.217794,0.622063,0.498512,0.630454,0.580519,0.411706,0.699538,0.770596,0.549214,0.501854,0.695724,0.139823,0.624336,0.410912,0.557325,0.55953,0.259414,0.697688,0.702951,0.598088,0.617979,0.605663,0.457727,0.575939,0.682074,0.389251,0.638444,0.67697,0.532301,0.591284,0.452445,0.219536,0.667217,0.493696,0.429941,0.117929,0.635133,0.530279,0.540756,0.334915,0.594759,0.43768,0.732667,0.626346,0.29055,0.594614,0.36333,0.197788,0.198359,0.480763,0.277407,0.15321,0.198229,0.786088,0.70292,0.613119,0.564689,0.655045,0.568595,0.287612,0.338385,0.232931,0.405501,0.232029,0.35722,0.240057,0.271862,0.423765,0.370237,0.165105,0.242093,0.313071,0.139077,0.440083,0.599323,0.754042,0.391262,0.818215,0.457378,0.705222,0.693525,0.590616,0.643865,0.757656,0.689474,0.542703,0.736669,0.707224,0.431728,0.503688,0.236271,0.588841,0.741401,0.660126,0.792588,0.38882,0.626139,0.637069,0.387334,0.580026,0.571641,0.73383,0.384447,0.683517,0.513034,0.637864,0.324971,0.795613,0.640649,0.606125,0.33179,0.301892,0.782217,0.529255,0.49939,0.717997,0.255516,0.716956,0.346873,0.634662,0.538845,0.495634,0.621629,0.688286,0.602459,0.833727|tfbs_overrepresentation_for_novel_motifs=0.22923,0.00275938,0.223258,0.345441,0.190185,0.344001,0.411652,0.340819,0.102889,0.0552668,0.317729,0.451026,0.0765797,0.401301,0.553807,0.207465,0.617549,0.148925,0.0839658,0.0292507,0.635173,0.0148753,0.337221,0.546841,0.260754,0.471832,0.0648754,0.335332,0.562141,0.206722,0.298956,0.65246,0.12577,0.268295,0.163884,0.0497783,0.161511,0.345014,0.871544,0.0916487,0.162847,0.285097,0.0815132,0.187953,0.00327556,0.24831,0.412635,0.308385,0.369629,0.192687,0.484909,0.423285,0.0382824,0.725869,0.873575,0.403938,0.570319,0.374657,0.0564659,0.373762,1.65239,0.414771,0.103208,0.591384,0.43102,0.559038,0.959746,1.32257,0.642589,1.16217,0.273995,0.108268,0.0373297,0.871629,0.0739759,0.237079,0.059808,0.575479,0.639503,0.255642,0.0868483,0.590372,0.4307,1.70185,0.821696,0.180819,0.527748,0.440676,0.508983,1.42111,1.05129,0.795567,1.60439,0.409242,0.190761,0.140087,0.282722,0.709167,0.51326,0.396174,0.446192,0.663075,0.703825,0.621018,0.54826,0.313822,0.606045,0.398205,0.260543,0.177931,0.232335,0.701175,0.624605,0.325885,1.00416,3.65403,0.104888,0.297931,0.556847,0.132787,0.863578,0.506732,0.341589,0.44095,1.11293,0.576194,0.405934,0.673222,0.905059,0.140769,0.796235,0.301402,0.919079,0.437919,1.06395,19.6857,0.293853,0.335825,1.02226,1.87395,1.47317,0.985665,0.407489,0.70579,0.549903,0.367151,0.534339,1.71519,0.282284,0.403378,0.0329025,0.0163338,0.796604,0.0978005,0.414334,1.19239,0.494,0.530398,0.260802,0.237047,0.984474,0.778717,0.638755,0.239672,1.38738,0.429983,0.120139,0.410452,0.00249101|tfbs_overrepresentation_jaspar=MA0003.1;0.00251029,MA0004.1;0.32225,MA0006.1;0.188769,MA0007.1;0.305951,MA0009.1;0.756202,MA0014.1;0.0339142,MA0017.1;0.220105,MA0019.1;0.45566,MA0024.1;0.654931,MA0025.1;0.886436,MA0027.1;2.35633,MA0028.1;0.201461,MA0029.1;0.673506,MA0030.1;0.662482,MA0031.1;0.600685,MA0038.1;0.414169,MA0040.1;1.62663,MA0041.1;0.338572,MA0042.1;0.835565,MA0043.1;0.756508,MA0046.1;0.745626,MA0048.1;0.0399193,MA0050.1;0.837296,MA0051.1;0.410316,MA0052.1;1.63439,MA0055.1;0.00698536,MA0056.1;0,MA0057.1;0.147728,MA0058.1;0.240796,MA0059.1;0.239727,MA0060.1;0.103131,MA0061.1;0.0856761,MA0063.1;0,MA0066.1;0.414559,MA0067.1;1.06751,MA0068.1;0.0633085,MA0069.1;0.741884,MA0070.1;0.731026,MA0071.1;0.379038,MA0072.1;0.726666,MA0073.1;0.0136807,MA0074.1;0.40963,MA0076.1;0.254045,MA0077.1;0.719193,MA0078.1;0.502027,MA0081.1;0.239862,MA0083.1;0.763502,MA0084.1;1.25286,MA0087.1;0.724294,MA0088.1;1.34245,MA0089.1;0,MA0090.1;0.266215,MA0091.1;0.86696,MA0092.1;0.291716,MA0093.1;0.191154,MA0095.1;0,MA0098.1;0,MA0100.1;0.426863,MA0101.1;0.19375,MA0103.1;0.181541,MA0105.1;0.0320473,MA0106.1;0.452066,MA0107.1;0.137948,MA0108.2;0.597764,MA0109.1;0,MA0111.1;0.277713,MA0113.1;0.467266,MA0114.1;0.134281,MA0115.1;0.992167,MA0116.1;0.140463,MA0117.1;0.792789,MA0119.1;0.226505,MA0122.1;0.818044,MA0124.1;0.951337,MA0125.1;0.868909,MA0130.1;0,MA0131.1;0.519055,MA0132.1;0,MA0133.1;0,MA0135.1;0.785738,MA0136.1;0.420617,MA0139.1;0.268952,MA0140.1;0.376643,MA0141.1;0.238287,MA0142.1;0.570448,MA0143.1;0.467429,MA0144.1;0.124153,MA0145.1;0.0212759,MA0146.1;0.000996775,MA0147.1;0.440281,MA0148.1;0.910784,MA0149.1;0.367947,MA0062.2;0.0823902,MA0035.2;0.376007,MA0039.2;0.000717146,MA0138.2;0.503176,MA0002.2;0.0954816,MA0137.2;0.20663,MA0104.2;0.335786,MA0047.2;0.440861,MA0112.2;0.0192555,MA0065.2;0.0221687,MA0150.1;0.261236,MA0151.1;0,MA0152.1;0.382565,MA0153.1;0.852412,MA0154.1;0.126936,MA0155.1;0.202876,MA0156.1;0.208455,MA0157.1;0.544523,MA0158.1;0,MA0159.1;0.143477,MA0160.1;0.357736,MA0161.1;0,MA0162.1;0.0602299,MA0163.1;0.00158421,MA0164.1;1.20414,MA0080.2;0.191221,MA0018.2;0.453345,MA0099.2;0.382887,MA0079.2;6.44716e-05,MA0102.2;1.28978,MA0258.1;0.117513,MA0259.1;0.149181,MA0442.1;0}}
|full_id=C705_small_cerebellum_parietal_occipital_temporal_amygdala_olfactory
|id=C705
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007023!9.94e-31!115;UBERON:0001049!2.53e-29!57;UBERON:0005068!2.53e-29!57;UBERON:0006241!2.53e-29!57;UBERON:0007135!2.53e-29!57;UBERON:0000073!5.92e-29!94;UBERON:0001016!5.92e-29!94;UBERON:0001017!5.76e-27!82;UBERON:0000955!1.13e-25!69;UBERON:0006238!1.13e-25!69;UBERON:0005743!1.73e-25!86;UBERON:0002616!4.13e-25!59;UBERON:0002780!5.90e-25!41;UBERON:0001890!5.90e-25!41;UBERON:0006240!5.90e-25!41;UBERON:0003080!7.13e-24!42;UBERON:0002346!1.02e-23!90;UBERON:0003075!1.06e-22!86;UBERON:0007284!1.06e-22!86;UBERON:0002020!5.08e-21!34;UBERON:0003528!5.08e-21!34;UBERON:0001893!1.29e-20!34;UBERON:0002791!6.51e-20!33;UBERON:0001869!1.07e-19!32;UBERON:0003056!6.42e-17!61;UBERON:0002619!9.10e-17!22;UBERON:0000924!1.60e-16!173;UBERON:0006601!1.60e-16!173;UBERON:0004121!1.30e-15!169;UBERON:0001950!3.37e-15!20;UBERON:0000956!6.90e-15!25;UBERON:0000203!6.90e-15!25;UBERON:0000153!1.93e-13!129;UBERON:0007811!1.93e-13!129;UBERON:0000033!2.03e-13!123;UBERON:0002420!7.58e-08!9;UBERON:0007245!7.58e-08!9;UBERON:0010009!7.58e-08!9;UBERON:0010011!7.58e-08!9;UBERON:0000454!7.58e-08!9;UBERON:0002308!1.14e-07!9;UBERON:0000125!1.14e-07!9;UBERON:0000062!1.48e-07!511;UBERON:0000468!9.13e-07!659;UBERON:0003076!9.25e-07!15;UBERON:0003057!9.25e-07!15
}}

Latest revision as of 11:29, 17 September 2013


Full id: C705_small_cerebellum_parietal_occipital_temporal_amygdala_olfactory



Phase1 CAGE Peaks

Hg19::chr17:47653077..47653091,+p3@NXPH3
Hg19::chr20:30573367..30573378,+p@chr20:30573367..30573378
+
Hg19::chr20:30574743..30574753,+p@chr20:30574743..30574753
+
Hg19::chr20:30574762..30574771,+p@chr20:30574762..30574771
+
Hg19::chr6:102297713..102297717,+p@chr6:102297713..102297717
+
Hg19::chr6:102357270..102357274,+p@chr6:102357270..102357274
+
Hg19::chr6:102358656..102358697,+p@chr6:102358656..102358697
+
Hg19::chr6:102365472..102365475,+p@chr6:102365472..102365475
+
Hg19::chr6:102367060..102367078,+p@chr6:102367060..102367078
+
Hg19::chr6:102368618..102368631,+p@chr6:102368618..102368631
+
Hg19::chr6:102374094..102374097,+p@chr6:102374094..102374097
+
Hg19::chr7:29274566..29274570,+p@chr7:29274566..29274570
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
neural tube9.98e-7756
neural rod9.98e-7756
future spinal cord9.98e-7756
neural keel9.98e-7756
regional part of nervous system1.26e-7653
regional part of brain1.26e-7653
brain2.67e-6868
future brain2.67e-6868
brain grey matter3.01e-6434
gray matter3.01e-6434
central nervous system5.02e-6381
nervous system1.01e-6289
regional part of forebrain8.61e-6241
forebrain8.61e-6241
anterior neural tube8.61e-6241
future forebrain8.61e-6241
telencephalon4.61e-5934
regional part of telencephalon7.63e-5832
cerebral hemisphere9.48e-5832
neurectoderm1.75e-5386
regional part of cerebral cortex4.49e-5222
neural plate4.57e-5082
presumptive neural plate4.57e-5082
cerebral cortex1.54e-4525
pallium1.54e-4525
neocortex9.31e-4520
pre-chordal neural plate1.17e-3961
ecto-epithelium8.08e-38104
ectoderm-derived structure2.50e-32171
ectoderm2.50e-32171
presumptive ectoderm2.50e-32171
structure with developmental contribution from neural crest3.92e-30132
adult organism1.79e-29114
organ system subdivision9.70e-23223
neural nucleus7.92e-209
nucleus of brain7.92e-209
tube8.69e-17192
gyrus3.08e-166
posterior neural tube1.07e-1515
chordal neural plate1.07e-1515
regional part of metencephalon1.80e-159
metencephalon1.80e-159
future metencephalon1.80e-159
segmental subdivision of hindbrain2.09e-1512
hindbrain2.09e-1512
presumptive hindbrain2.09e-1512
basal ganglion4.99e-159
nuclear complex of neuraxis4.99e-159
aggregate regional part of brain4.99e-159
collection of basal ganglia4.99e-159
cerebral subcortex4.99e-159
segmental subdivision of nervous system3.82e-1413
temporal lobe8.27e-146
telencephalic nucleus1.54e-137
parietal lobe2.42e-135
limbic system3.77e-135
frontal cortex1.21e-123
anatomical conduit7.95e-12240
pons1.18e-113
organ part8.05e-11218
brainstem3.29e-106
anatomical cluster6.64e-10373
Ammon's horn1.97e-092
lobe parts of cerebral cortex1.97e-092
hippocampal formation1.97e-092
limbic lobe1.97e-092
corpus striatum2.73e-094
striatum2.73e-094
ventral part of telencephalon2.73e-094
future corpus striatum2.73e-094
middle frontal gyrus3.47e-092
pituitary gland8.35e-092
middle temporal gyrus8.69e-092
locus ceruleus1.97e-082
brainstem nucleus1.97e-082
hindbrain nucleus1.97e-082
epithelium2.65e-08306
cell layer3.81e-08309
occipital lobe5.48e-085
cerebellum5.16e-076
rhombic lip5.16e-076


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10.00251029
MA0004.10.32225
MA0006.10.188769
MA0007.10.305951
MA0009.10.756202
MA0014.10.0339142
MA0017.10.220105
MA0019.10.45566
MA0024.10.654931
MA0025.10.886436
MA0027.12.35633
MA0028.10.201461
MA0029.10.673506
MA0030.10.662482
MA0031.10.600685
MA0038.10.414169
MA0040.11.62663
MA0041.10.338572
MA0042.10.835565
MA0043.10.756508
MA0046.10.745626
MA0048.10.0399193
MA0050.10.837296
MA0051.10.410316
MA0052.11.63439
MA0055.10.00698536
MA0056.10
MA0057.10.147728
MA0058.10.240796
MA0059.10.239727
MA0060.10.103131
MA0061.10.0856761
MA0063.10
MA0066.10.414559
MA0067.11.06751
MA0068.10.0633085
MA0069.10.741884
MA0070.10.731026
MA0071.10.379038
MA0072.10.726666
MA0073.10.0136807
MA0074.10.40963
MA0076.10.254045
MA0077.10.719193
MA0078.10.502027
MA0081.10.239862
MA0083.10.763502
MA0084.11.25286
MA0087.10.724294
MA0088.11.34245
MA0089.10
MA0090.10.266215
MA0091.10.86696
MA0092.10.291716
MA0093.10.191154
MA0095.10
MA0098.10
MA0100.10.426863
MA0101.10.19375
MA0103.10.181541
MA0105.10.0320473
MA0106.10.452066
MA0107.10.137948
MA0108.20.597764
MA0109.10
MA0111.10.277713
MA0113.10.467266
MA0114.10.134281
MA0115.10.992167
MA0116.10.140463
MA0117.10.792789
MA0119.10.226505
MA0122.10.818044
MA0124.10.951337
MA0125.10.868909
MA0130.10
MA0131.10.519055
MA0132.10
MA0133.10
MA0135.10.785738
MA0136.10.420617
MA0139.10.268952
MA0140.10.376643
MA0141.10.238287
MA0142.10.570448
MA0143.10.467429
MA0144.10.124153
MA0145.10.0212759
MA0146.10.000996775
MA0147.10.440281
MA0148.10.910784
MA0149.10.367947
MA0062.20.0823902
MA0035.20.376007
MA0039.20.000717146
MA0138.20.503176
MA0002.20.0954816
MA0137.20.20663
MA0104.20.335786
MA0047.20.440861
MA0112.20.0192555
MA0065.20.0221687
MA0150.10.261236
MA0151.10
MA0152.10.382565
MA0153.10.852412
MA0154.10.126936
MA0155.10.202876
MA0156.10.208455
MA0157.10.544523
MA0158.10
MA0159.10.143477
MA0160.10.357736
MA0161.10
MA0162.10.0602299
MA0163.10.00158421
MA0164.11.20414
MA0080.20.191221
MA0018.20.453345
MA0099.20.382887
MA0079.26.44716e-05
MA0102.21.28978
MA0258.10.117513
MA0259.10.149181
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C705&oldid=3067822"