FFCP PHASE1:Hg19::chr2:74669383..74669398,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6242 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10466 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=147bp_to_ENST00000484453_5end | |||
|cluster_id=chr2:74669383..74669398,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_7_at_RTKN_5end | |||
|id=chr2:74669383..74669398,- | |||
|ontology_enrichment_celltype=CL:0000223!1.91e-11!59;CL:0002076!1.85e-07!43;CL:0000066!4.19e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000039;6.40e-10;7!CL:0000586;6.40e-10;7!CL:0000182;1.61e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,4.12e-10,7;CL:0000586,4.12e-10,7;CL:0000182,1.51e-08,12 | |||
|ontology_enrichment_development_v019=UBERON:0006601;8.87e-10;82!UBERON:0009497;1.88e-07;13!UBERON:0003104;5.51e-07;31!UBERON:0004161;9.30e-07;11 | |||
|ontology_enrichment_disease=DOID:305!1.42e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.65e-35!115;UBERON:0001049!6.83e-22!57;UBERON:0005068!6.83e-22!57;UBERON:0006241!6.83e-22!57;UBERON:0007135!6.83e-22!57;UBERON:0003080!3.43e-18!42;UBERON:0002616!7.93e-18!59;UBERON:0002780!8.80e-18!41;UBERON:0001890!8.80e-18!41;UBERON:0006240!8.80e-18!41;UBERON:0003075!2.16e-17!86;UBERON:0007284!2.16e-17!86;UBERON:0000481!7.67e-16!347;UBERON:0002346!1.24e-15!90;UBERON:0001017!6.47e-15!82;UBERON:0005743!7.17e-15!86;UBERON:0000475!9.03e-15!365;UBERON:0002020!2.85e-14!34;UBERON:0003528!2.85e-14!34;UBERON:0000955!3.00e-14!69;UBERON:0006238!3.00e-14!69;UBERON:0001893!3.60e-14!34;UBERON:0000033!3.80e-14!123;UBERON:0000062!5.63e-14!511;UBERON:0000153!6.58e-14!129;UBERON:0007811!6.58e-14!129;UBERON:0004111!1.47e-13!241;UBERON:0002791!1.51e-13!33;UBERON:0004121!4.76e-13!169;UBERON:0000483!1.00e-12!309;UBERON:0001869!1.11e-12!32;UBERON:0003056!1.13e-12!61;UBERON:0000119!1.72e-12!312;UBERON:0000924!4.24e-12!173;UBERON:0006601!4.24e-12!173;UBERON:0000073!1.33e-11!94;UBERON:0001016!1.33e-11!94;UBERON:0000477!3.68e-11!286;UBERON:0004119!6.20e-11!169;UBERON:0000925!6.20e-11!169;UBERON:0006595!6.20e-11!169;UBERON:0000466!1.43e-10!126;UBERON:0000922!1.60e-10!612;UBERON:0000064!2.12e-10!219;UBERON:0000468!3.51e-10!659;UBERON:0000025!3.93e-10!194;UBERON:0000467!9.96e-10!625;UBERON:0000480!1.33e-09!626;UBERON:0001007!1.99e-09!155;UBERON:0001555!1.99e-09!155;UBERON:0007026!1.99e-09!155;UBERON:0000077!3.50e-09!130;UBERON:0004921!4.11e-09!129;UBERON:0004185!4.11e-09!129;UBERON:0002050!7.10e-09!605;UBERON:0005423!7.10e-09!605;UBERON:0002619!9.48e-09!22;UBERON:0000923!1.11e-08!604;UBERON:0005291!1.11e-08!604;UBERON:0006598!1.11e-08!604;UBERON:0002532!1.11e-08!604;UBERON:0002308!2.61e-08!9;UBERON:0000125!2.61e-08!9;UBERON:0000956!2.69e-08!25;UBERON:0000203!2.69e-08!25;UBERON:0002530!2.88e-08!59;UBERON:0005177!1.05e-07!107;UBERON:0001950!1.91e-07!20;UBERON:0000464!3.79e-07!104;UBERON:0001041!6.11e-07!98;UBERON:0005911!6.15e-07!82;UBERON:0002298!6.33e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.16e-20;41!UBERON:0001890;1.16e-20;41!UBERON:0001893;3.18e-20;34!UBERON:0003528;5.60e-20;34!UBERON:0002020;5.60e-20;34!UBERON:0002791;4.18e-19;32!UBERON:0001869;7.54e-19;32!UBERON:0000073;2.10e-16;53!UBERON:0002616;2.10e-16;53!UBERON:0002619;2.12e-15;22!UBERON:0000125;2.51e-14;9!UBERON:0002308;2.51e-14;9!UBERON:0000956;3.62e-13;25!UBERON:0000203;3.62e-13;25!UBERON:0001950;1.16e-12;20!UBERON:0002420;6.79e-11;9!UBERON:0007245;6.79e-11;9!UBERON:0010009;6.79e-11;9!UBERON:0010011;6.79e-11;9!UBERON:0000454;6.79e-11;9!UBERON:0009663;1.18e-10;7!UBERON:0000955;1.92e-10;68!UBERON:0001017;3.72e-10;75!UBERON:0002365;8.23e-10;31!UBERON:0002330;8.23e-10;31!UBERON:0007023;1.57e-09;114!UBERON:0002298;1.17e-08;6!UBERON:0002107;4.35e-08;19!UBERON:0006925;4.35e-08;19!UBERON:0000200;5.60e-08;6!UBERON:0001016;7.60e-08;83!UBERON:0002423;5.17e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,9.84e-32,56;UBERON:0005068,9.84e-32,56;UBERON:0006241,9.84e-32,56;UBERON:0007135,9.84e-32,56;UBERON:0000073,1.40e-29,53;UBERON:0002616,1.40e-29,53;UBERON:0007023,2.62e-28,114;UBERON:0002780,3.92e-25,41;UBERON:0001890,3.92e-25,41;UBERON:0003080,3.92e-25,41;UBERON:0006240,3.92e-25,41;UBERON:0003528,3.08e-24,34;UBERON:0002020,3.08e-24,34;UBERON:0001017,3.25e-24,81;UBERON:0001893,4.94e-24,34;UBERON:0000955,8.36e-24,68;UBERON:0006238,8.36e-24,68;UBERON:0003075,1.18e-22,82;UBERON:0007284,1.18e-22,82;UBERON:0002791,4.05e-21,32;UBERON:0002346,4.11e-21,86;UBERON:0001869,7.57e-21,32;UBERON:0001016,9.44e-21,89;UBERON:0011216,1.76e-19,223;UBERON:0010371,3.76e-19,104;UBERON:0003056,7.09e-16,61;UBERON:0010314,2.38e-15,132;UBERON:0002619,2.79e-15,22;UBERON:0000125,1.76e-14,9;UBERON:0002308,1.76e-14,9;UBERON:0000025,1.21e-13,192;UBERON:0000956,4.59e-13,25;UBERON:0000203,4.59e-13,25;UBERON:0004121,6.89e-13,171;UBERON:0000924,6.89e-13,171;UBERON:0006601,6.89e-13,171;UBERON:0001950,1.88e-12,20;UBERON:0004111,4.15e-12,240;UBERON:0002420,4.22e-11,9;UBERON:0007245,4.22e-11,9;UBERON:0010009,4.22e-11,9;UBERON:0010011,4.22e-11,9;UBERON:0000454,4.22e-11,9;UBERON:0009663,7.75e-11,7;UBERON:0002365,3.63e-10,31;UBERON:0002330,3.63e-10,31;UBERON:0002298,9.74e-09,6;UBERON:0008835,2.35e-08,22;UBERON:0003894,2.35e-08,22;UBERON:0000200,3.94e-08,6;UBERON:0002107,3.97e-08,19;UBERON:0006925,3.97e-08,19;UBERON:0008836,3.97e-08,19;UBERON:0000483,6.72e-08,306;UBERON:0009854,6.90e-08,23;UBERON:0003076,8.39e-08,15;UBERON:0003057,8.39e-08,15;UBERON:0000119,1.09e-07,309;UBERON:0007499,4.56e-07,25;UBERON:0009497,4.56e-07,25;UBERON:0000015,4.56e-07,25;UBERON:0002423,4.56e-07,25;UBERON:0006235,4.56e-07,25;UBERON:0004161,4.56e-07,25;UBERON:0001896,7.32e-07,3;UBERON:0005290,7.32e-07,3;UBERON:0010096,7.32e-07,3;UBERON:0000349,7.84e-07,5 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0.446961094427288,0.872338524100369,0,0,0.261185628199839,0.245733936501509,2.09340350391728,0.655324116390517,0.527533956456907,0.123766352960047,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0.251085279189606,0,0.164201178899891,0,0,0,0,1.83884244895785,0.90361775633475,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.12786256184353,0,0,0,0,0.973269740605272,0.189069634328136,0,0.087834785693126,1.17881167947941,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468642863667593,0,0,0.149448680551801,0.117434498643765,0,0,0.204154171254893,0,0.516628905878827,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0.193260853163297,0,0.573609190778008,0.487894824518382,1.98794652482228,0.813357600086629,1.0366105501537,0.756962552626885,1.45990943630332,0,0,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.8861076608028,14.7424082501644,12.9973779469909,0,0.983907508344908,0,0.768251997860379,2.24803506515239,0.703702806881416,0.185176890317059,0,0,0,0.115930404975077,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0.93733833986777,0.16798212819886,0.708875486211932,0.447792613514241,0.290633938513962,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,2.42502057157008,0,0.30239029332968,0,0,0,0,0.511707249066704,0,0,0.154209693802656,0.532685175939381,0.328508624055237,0,0,1.81289174387433,0.802025881213139,0.460404944679482,0,0,0.131124414959424,0.902399225814824,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0.541892875087706,0,0.254876273045038,0,0,0,0,0.512900250232778,0,0,4.12164046590889,0,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0.644521469209642,0.290033387828457,0.0852266274161009,0,0.661139661443912,1.53752053892085,0.255225424989168,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0.42793898803392,0.318203247925937,0,0,0.274537029736055,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0.354761064070598,0.422215270595328,0.329294892959902,0.379473173765715,0,0.673554789078584,0,1.08890984861323,3.67160823029439,1.29151611801369,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0.640944426764839,0,0.980160863924127,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0.879049075631364,1.09224469574562,0,0,0.95497793895076,0,0.307160702099232,0,2.67271891179974,0,0.329607748453519,0,0.996239941255349,0.552567831062295,0.755798243562828,0,0,0,0.539210106883961,2.86433879480975,0,0.394573622547734,0,0,3.87733098438087,1.11321717794222,0,0.7812832832557,0.262379999988587,0.724999575434793,0,0.508507300585533,0,0,0,0,4.42870692906919,1.5677537021303,6.10326945268333,0.884634079449797,0,0.438770794307945,0,0.975966209950223,0.384751292518985,0,8.0697366535821,1.52587995496613,0.217294743844016,0.638002319463839,0.366390373607449,0.533034776018635,0,0,0,0,0,0,0,0,0.843992258112108,1.95879369790977,2.12029607150911,0,0,0.619202951523374,0,0,0,0,2.96564985114979,0.802577647298789,3.27970224015475,0,0.391329237864179,0,0,0,0,1.0741718536843,0,0,0,0,0,0,0.569219092059585,0,0.867798691675654,0.195984794828755,0.783532859223623,0.17472666824203,0,0,0,0,0.387956065953678,0,0,0,0,1.64608069485285,0.782205530939212,0.320635281006135,0,0,0.576361668616424,0.572682980829578,0.686379991447858,0,0.124252535565433,1.41416420770077,0,0,0,0,4.20294202096853,4.10716136675979,0,0,0,1.39641200636127,0.916641696046735,1.43574604915363,0.798716001995964,1.71690419254628,0.669514372325618,1.81395375714161,0,8.15471646692177,2.91497774536727,3.04938676010316,2.49393112260484,0.492137407573744,0.338693328263138,1.59045937961861,2.99647493445466,0.964518890790115,0.962776056180637,1.66176135211674,1.349843349309,0,0.971992906528395,0,1.33969702408637,1.25891011523995,0,0,0.575745591958336,0,0.662091970365432,0.76280561296425,0,0,0.326587360109409,0,0,0,0,12.1638353952808,2.65013777824443,3.10279095267721,2.38018683136842,0,0.704815022316672,0.320362237703084,0.943225830597996,0.414239055347196,0.496166021811951,0,0,0.638341257770182,1.08803560673895,0.5013797880454,1.22538230705385,0.983617892129413,1.88464915500281,1.77213635993397,0.732157589411779,2.3786276834235,2.29363678276028,1.99672292766334,2.11127770000704,0,0,0,0,0,0,0,0.298509605773748,0,0,0,0,0,0,0.302461847526478,0.310874401165561,0.147855149989634,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0.464033759878494,0.398095888698616,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,2.07387654227596,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,1.79841830270087,1.41696576325585,3.35231104020018,1.02558182120378,0,1.1756732918917,1.93770774758221,0,0.88332946650923,0.471878893390961,0.366857197043358,0.346576998451015,0,0,0,0.601682626794058,0,3.90757005616546,4.45241380618418,0.327543835020193,0.887136517302272,1.48582686160468,0.781078098613847,1.2401207790071,1.26831620387814,0,1.09651553371436,0,0,0,0.535701835878287,0.672567444437648,0.606965604236632,1.13831095675649,0.0887023701626388,0,0.342976018874837,0.611727596791485,1.77586488619693,0.590969204419841,0.556157009460346,0.863424021355654,0.628462359664008,0.560544326627578,0.913158720509496,0.863710364874486,0,1.35805433935647,0,0.23248285073625,0,0,0.414432328326074,0.85359238546975,1.38251932362818,3.01159151174194,0,0,0.423387050190929,0.9164274741762,0,0,0.447421727191169,1.27595303699816,0.365753774946808,0.647428837187895,0.102662806856247,1.1598144313382,0.971421986118279,0.233939463462106,2.58636007709779,0,0.11294608203896,0,5.1327366812669,0.617393264863557,0,0,0.490296643507811,2.59244201811789,1.57046773691956,3.26751040359795,0,0,0,0.0644578879735772,0,0.535661815816973,0.705789743431384,0.160482733378337,1.46067277649303,1.83491713361816,3.44014999563483,0,2.17572768610927,0,2.1161073620616,0.743990036333503,1.84870251452567,0.865253124247578,0.630832124175395,0.218531143927391,0.253397002022874,1.93778776509765,2.40495664739004,1.37842349302267,2.50707539292375,0.454672189309436,0.267964130156178,0.829169439458779,3.93045384275202,0,1.1903221573187,0.193766729508018,0.124149428591716,0,0.954707374172474,1.21270313374932,0.217716747896961,0,0.26940821205835,1.2192774916755,1.66330178273007,0.814032686109745,0,0,0.269475606319761,0,0.488965776731466,0.406896178315738,1.99727032255654,0.402547587182052,0 | |||
|short_description=p7@RTKN | |||
}} |
Latest revision as of 11:03, 18 September 2015
Short description: | p7@RTKN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_RTKN_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 147bp_to_ENST00000484453_5end |
EntrezGene: | RTKN |
HGNC: | 10466 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 4.12e-10 | 7 |
germ cell | 4.12e-10 | 7 |
hepatocyte | 1.51e-08 | 12 |