FFCP PHASE1:Hg19::chr4:77356369..77356405,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:77356369..77356405,+
|short_description=p4@SHROOM3
|description=CAGE_peak_4_at_SHROOM3_5end
|association_with_transcript=116bp_to_ENST00000296043,NM_020859...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57619 | |EntrezGene=57619 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |HGNC=30422 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TF72,B3KY47 | |UniProt=Q8TF72,B3KY47 | ||
|association_with_transcript=116bp_to_ENST00000296043,NM_020859,uc011cbx.1_5end | |||
|cluster_id=chr4:77356369..77356405,+ | |||
|coexpression_cluster_id=C2796 | |||
|description=CAGE_peak_4_at_SHROOM3_5end | |||
|id=chr4:77356369..77356405,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.85e-09!25;CL:0000047!3.40e-08!8;CL:0000128!8.99e-08!7;CL:0000126!8.99e-08!7;CL:0000127!8.99e-08!7;CL:0002453!8.99e-08!7;CL:0000133!1.56e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002319;2.90e-10;25!CL:0000128;1.08e-08;7!CL:0000126;1.08e-08;7!CL:0000127;1.08e-08;7!CL:0002605;1.19e-08;3!CL:0000064;1.28e-08;3!CL:0000067;1.28e-08;3!CL:0005012;1.28e-08;3!CL:0002304;1.28e-08;3!CL:0002586;4.66e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,3.09e-10,8;CL:0002319,3.87e-10,25;CL:0002605,1.16e-08,3;CL:0000064,1.28e-08,3;CL:0000067,1.28e-08,3;CL:0005012,1.28e-08,3;CL:0002304,1.28e-08,3;CL:0000128,1.44e-08,7;CL:0000126,1.44e-08,7;CL:0000127,1.44e-08,7;CL:0002453,1.44e-08,7;CL:0002586,4.03e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006241;4.00e-08;3!UBERON:0003057;4.00e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!3.70e-43!86;UBERON:0001017!3.21e-39!82;UBERON:0000073!1.23e-37!94;UBERON:0001016!1.23e-37!94;UBERON:0003075!2.28e-34!86;UBERON:0007284!2.28e-34!86;UBERON:0002346!9.94e-32!90;UBERON:0001049!6.49e-31!57;UBERON:0005068!6.49e-31!57;UBERON:0006241!6.49e-31!57;UBERON:0007135!6.49e-31!57;UBERON:0000955!7.23e-29!69;UBERON:0006238!7.23e-29!69;UBERON:0000153!2.96e-27!129;UBERON:0007811!2.96e-27!129;UBERON:0002616!1.08e-26!59;UBERON:0000033!1.85e-26!123;UBERON:0004121!7.21e-25!169;UBERON:0003056!1.50e-24!61;UBERON:0000924!1.39e-23!173;UBERON:0006601!1.39e-23!173;UBERON:0007023!1.09e-21!115;UBERON:0002780!2.40e-21!41;UBERON:0001890!2.40e-21!41;UBERON:0006240!2.40e-21!41;UBERON:0003080!1.56e-20!42;UBERON:0002020!2.43e-18!34;UBERON:0003528!2.43e-18!34;UBERON:0001893!3.36e-18!34;UBERON:0002791!1.83e-17!33;UBERON:0001869!1.05e-16!32;UBERON:0000956!2.79e-13!25;UBERON:0000203!2.79e-13!25;UBERON:0003076!1.03e-11!15;UBERON:0003057!1.03e-11!15;UBERON:0002619!1.81e-10!22;UBERON:0001950!2.45e-10!20;UBERON:0007625!3.52e-10!11;UBERON:0004733!7.92e-09!12;UBERON:0002028!7.92e-09!12;UBERON:0007277!7.92e-09!12;UBERON:0000475!1.53e-08!365;UBERON:0004732!6.99e-08!13;UBERON:0000025!2.44e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;1.24e-20;11!UBERON:0003528;1.25e-14;34!UBERON:0002020;1.25e-14;34!UBERON:0002791;1.37e-14;32!UBERON:0001869;1.53e-14;32!UBERON:0001893;7.31e-14;34!UBERON:0000073;9.40e-14;53!UBERON:0002616;9.40e-14;53!UBERON:0000956;2.17e-13;25!UBERON:0000203;2.17e-13;25!UBERON:0000019;2.42e-13;19!UBERON:0000047;2.42e-13;19!UBERON:0004088;2.42e-13;19!UBERON:0010230;2.42e-13;19!UBERON:0002780;3.54e-13;41!UBERON:0001890;3.54e-13;41!UBERON:0000970;1.55e-12;20!UBERON:0001017;3.46e-12;75!UBERON:0002104;8.25e-12;21!UBERON:0001456;8.25e-12;21!UBERON:0000488;1.07e-10;4!UBERON:0000020;1.51e-10;23!UBERON:0000955;2.21e-10;68!UBERON:0001016;4.75e-10;83!UBERON:0001032;5.36e-10;24!UBERON:0004456;5.36e-10;24!UBERON:0002619;8.04e-09;22!UBERON:0001778;1.28e-08;3!UBERON:0001775;1.28e-08;3!UBERON:0000966;3.68e-08;5!UBERON:0005388;3.68e-08;5!UBERON:0001802;3.68e-08;5!UBERON:0002240;4.00e-08;3!UBERON:0005174;4.00e-08;3!UBERON:0001137;4.00e-08;3!UBERON:0001781;4.66e-08;3!UBERON:0001782;4.66e-08;3!UBERON:0001950;5.97e-08;20!UBERON:0001801;1.21e-07;14!UBERON:0001896;1.80e-07;3!UBERON:0005290;1.80e-07;3!UBERON:0002203;4.52e-07;6!UBERON:0001768;4.52e-07;6!UBERON:0002200;4.52e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003075,2.68e-33,82;UBERON:0007284,2.68e-33,82;UBERON:0001017,1.41e-32,81;UBERON:0002346,3.18e-31,86;UBERON:0003056,8.42e-29,61;UBERON:0001016,2.99e-28,89;UBERON:0010314,4.95e-26,132;UBERON:0001049,5.30e-25,56;UBERON:0005068,5.30e-25,56;UBERON:0006241,5.30e-25,56;UBERON:0007135,5.30e-25,56;UBERON:0010371,7.05e-24,104;UBERON:0004121,4.41e-23,171;UBERON:0000924,4.41e-23,171;UBERON:0006601,4.41e-23,171;UBERON:0000955,7.41e-22,68;UBERON:0006238,7.41e-22,68;UBERON:0007625,9.79e-21,11;UBERON:0000073,1.49e-20,53;UBERON:0002616,1.49e-20,53;UBERON:0003528,9.07e-18,34;UBERON:0002020,9.07e-18,34;UBERON:0001893,1.24e-17,34;UBERON:0002780,2.07e-17,41;UBERON:0001890,2.07e-17,41;UBERON:0003080,2.07e-17,41;UBERON:0006240,2.07e-17,41;UBERON:0002791,5.34e-17,32;UBERON:0001869,8.36e-17,32;UBERON:0000956,1.78e-13,25;UBERON:0000203,1.78e-13,25;UBERON:0000019,1.38e-12,20;UBERON:0000047,1.38e-12,20;UBERON:0010312,1.38e-12,20;UBERON:0004088,1.38e-12,20;UBERON:0010230,1.38e-12,20;UBERON:0003072,1.38e-12,20;UBERON:0004128,1.38e-12,20;UBERON:0003071,1.38e-12,20;UBERON:0000970,7.42e-12,21;UBERON:0002104,7.42e-12,21;UBERON:0001456,3.41e-11,22;UBERON:0000488,1.10e-10,4;UBERON:0000020,4.90e-10,24;UBERON:0001032,4.90e-10,24;UBERON:0004456,4.90e-10,24;UBERON:0011216,1.50e-09,223;UBERON:0002619,6.89e-09,22;UBERON:0003076,7.45e-09,15;UBERON:0003057,7.45e-09,15;UBERON:0001778,1.28e-08,3;UBERON:0001775,1.28e-08,3;UBERON:0007023,2.65e-08,114;UBERON:0002240,4.03e-08,3;UBERON:0005174,4.03e-08,3;UBERON:0001782,4.03e-08,3;UBERON:0001137,4.03e-08,3;UBERON:0005424,4.03e-08,3;UBERON:0001950,5.08e-08,20;UBERON:0001896,1.11e-07,3;UBERON:0005290,1.11e-07,3;UBERON:0010096,1.11e-07,3;UBERON:0001801,1.14e-07,14;UBERON:0005085,3.45e-07,31;UBERON:0002203,4.58e-07,6;UBERON:0001768,4.58e-07,6;UBERON:0002200,4.58e-07,6;UBERON:0000966,8.39e-07,6;UBERON:0005388,8.39e-07,6;UBERON:0001802,8.39e-07,6 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,3.0780264519197,0.816002764977012,0.940364164434263,18.8915751506497,6.84372125364421,26.112869035719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15076305659177,0.361439152384566,0,0.724232594804119,0,0,12.6676654999851,9.97782288581538,10.2766699260957,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.506522046658319,0.529636723252875,0.573673241497627,0,1.12135520028461,0,0,0.311211035399766,0,0,0.454072282934794,0.576175924479999,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.89694817844431,0,0,0,0,0.772921620136887,0.37223371266318,0.337552664482532,0.0974370051611986,0.504867548488229,0.276149695926898,0,1.06502877754984,0.403008392910561,0.169560592310488,0,0,0,0.243947412259191,0.397589304964456,0.464775771478074,3.10983165046111,0.252320850875628,1.45990943630332,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,3.43135620597051,0,0,0,0.0925884451585296,0,0,1.44331342025273,9.97001482785661,2.34817388471643,0,0,0,0,0,0,0,0,0,0,0.283550194484773,0,0,0,0,0,0,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.4670150837906,1.30139853857622,7.73288812777695,2.01019518401218,6.37938751653163,0,0,0,0,0,0,0.415941723061614,0.535286966391485,0.788512075169673,0.468565659970853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2276957863045,0.280660094433074,0.128139149255701,1.53512174720011,0,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.66770325302612,3.60816110269676,3.90454073597164,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0.0890320356467374,0,0,0.127612712494584,0,0,0.62962469366128,0,0,0,0,0,0.429374660225974,0,0,0,0,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0,0,0,1.32687795048244,0,0,0,0,0.6196469961995,0,0,0,0,0,0.633322905892992,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,2.13648142254946,2.88743956579008,0.980160863924127,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0.146508179271894,6.06802608747567,0,0,0.23874448473769,0.593929361665277,0,0.994147647766298,1.96937182974718,0,0,9.7117687738877,0.19924798825107,0,0,1.1249555075237,0,0,0,0,0,0.295930216910801,0,0,3.87733098438087,1.29875337426592,3.99227596002388,0,0,0,0,0,0,0,0,0,0,1.08536794762867,0,0.552896299656123,0.886642856860642,0.219385397153973,0.21787692703798,0,0.0769502585037971,0.227884111694002,0.23056390438806,0,1.08647371922008,0,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,1.30586246527318,0,4.54416143458391,0,0,0,0,0,0,0.808813595768125,0,0.702793337176017,0.182454789215666,0.586993856796269,0,0.789168805698781,0,0.91821828489147,0.568679216656392,0,0,0,0,0,0,0.569219092059585,0,1.38847790668105,0,0,1.04836000945218,3.78369271437556,0,0.146178634172371,0.0821154570532092,0.193978032976839,0,0.677942222341597,0,0,1.32952671507345,0,0.160317640503067,0.426905989478705,0,0,1.60351234632282,0,0,0,0,0.271808412147228,0.313808538937,0,0,0.600420288709789,1.50595916781192,0,0,0,0.558564802544508,0.687481272035051,0,0.399358000997982,0.429226048136571,0,1.34366944973453,0,0,0,0,0,0.393709926058995,0.846733320657845,0,4.22230558945884,0.643012593860077,0.412618309791701,2.07720169014593,0,0,1.76173714308272,0,0.788057072991982,0.157363764404994,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,1.93924434542326,0.92562821219883,0,0,0.533937062838473,0.78602152549833,0,0,0,0,0,1.63205341010842,0,0.306345576763462,0,0.628216385000937,0,0.976210119215705,1.502291168478,2.29363678276028,1.88579387612649,4.96771223531068,7.74752355642893,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0.147855149989634,0.159296767163702,0,0,0,0,0,0.150257608997218,0,0.406870733204662,0,0,0,0,0,0.343395705182793,0,0,0,0,0,1.13352962756136,1.389134845943,0,0,0.308801447160972,0,0.530067437837643,0,0,0,2.07258205038719,0,1.10606748921385,0,0,0.163565394255844,0,0.737318726261158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.352675943690684,0,1.66995985250795,0,1.43670473151436,0.82046545696302,3.02486035466062,1.10651603942749,0.484426936895553,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,1.47394725759087,0,1.2156765231311,0,0.826747186004736,1.45856363445986,0.546974809018219,0.548257766857182,0.496211178389294,0,0,0.535701835878287,0.672567444437648,1.82089681270989,2.04895972216168,0.0887023701626388,0,0,0.883606528698812,1.38122824481983,0,0,0.156986185701028,0.942693539496011,0,0,0,0,4.07416301806941,0,0,0.521574816907738,0,0,0.17071847709395,0,10.7556839705069,0,0,0,2.7492824225286,0,0,0,3.82785911099448,10.7287773984397,0,0,0,0,0,0,0,12.6499611883635,0,0,0,0.218559560503957,0,0,0,3.53355240806901,4.4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| ||
|short_description=p4@SHROOM3 | |||
}} | }} |
Latest revision as of 17:53, 18 September 2015
Short description: | p4@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SHROOM3_5end |
Coexpression cluster: | C2796_Astrocyte_signet_Ciliary_small_Neural_anaplastic_Lens |
Association with transcript: | 116bp_to_ENST00000296043, NM_020859, uc011cbx.1_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | Q8TF72B3KY47 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 3.09e-10 | 8 |
neural cell | 3.87e-10 | 25 |
astrocyte of the cerebral cortex | 1.16e-08 | 3 |
ciliated cell | 1.28e-08 | 3 |
ciliated epithelial cell | 1.28e-08 | 3 |
multi-ciliated epithelial cell | 1.28e-08 | 3 |
non-pigmented ciliary epithelial cell | 1.28e-08 | 3 |
oligodendrocyte | 1.44e-08 | 7 |
macroglial cell | 1.44e-08 | 7 |
astrocyte | 1.44e-08 | 7 |
oligodendrocyte precursor cell | 1.44e-08 | 7 |
retinal pigment epithelial cell | 4.03e-08 | 3 |