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{{f5samples
{{f5samples
|id=10151
|DRA_sample_Accession=CAGE@SAMD00005342
|name=amygdala, adult, donor10252
|HumanCAGEScanFiles=NCig10024;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.pairs.bed.gz
|sample_id=FF:10151-102I7
|accession_numbers=CAGE;DRX008618;DRR009490;DRZ000915;DRZ002300;DRZ012265;DRZ013650
|rna_tube_id=102I7
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0001876,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950,UBERON:0000349,UBERON:0010011,UBERON:0000454
|rna_box=102
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|rna_position=I7
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=amygdala
|sample_donor(cell lot)=donor: 10252
|sample_sex=female
|sample_age=76
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.2
|rna_od260/280=2.06
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=Peter Heutink
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=59.61975
|rna_concentration=0.79493
|sample_note=
|profile_hcage=CNhs12311,LSID913,release011,COMPLETED
|profile_cagescan=NCig10024,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000073,UBERON:0000125,UBERON:0000153,UBERON:0000349,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001869,UBERON:0001876,UBERON:0001890,UBERON:0001893,UBERON:0002020,UBERON:0002050,UBERON:0002308,UBERON:0002346,UBERON:0002420,UBERON:0002532,UBERON:0002616,UBERON:0002780,UBERON:0002791,UBERON:0003056,UBERON:0003075,UBERON:0003080,UBERON:0003528,UBERON:0004121,UBERON:0005068,UBERON:0005291,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007023,UBERON:0007135,UBERON:0007284
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010151
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.54!344.78!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.41!254.33!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.15!140.81!SOX10;;chr3:181429704..181429722,+!p1@SOX2!2.11!129.28!SOX2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.10!124.07!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!1.84!68.79!OLIG2;;chr14:29235961..29236008,+!p1@FOXG1!1.82!65.55!FOXG1;;chr19:46801639..46801699,+!p1@HIF3A!1.77!57.25!HIF3A;;chr11:61520075..61520136,+!p1@C11orf9!1.75!112.68!C11orf9;;chr17:53342311..53342400,+!p1@HLF!1.74!61.05!HLF;;chr4:57547454..57547469,-!p1@HOPX!1.74!53.60!HOPX;;chr9:114287433..114287513,+!p1@ZNF483!1.71!126.32!ZNF483;;chr12:54779511..54779577,-!p5@ZNF385A!1.71!50.36!ZNF385A;;chr15:80733570..80733659,+!p2@ARNT2!1.71!49.80!ARNT2;;chr17:37764128..37764258,-!p1@NEUROD2!1.71!49.80!NEUROD2;;chr12:26277817..26277863,-!p2@BHLHE41!1.70!66.26!BHLHE41;;chr4:81118647..81118666,+!p1@PRDM8!1.70!64.43!PRDM8;;chr2:95963052..95963106,+!p1@KCNIP3!1.68!47.41!KCNIP3;;chr21:34442540..34442560,+!p2@OLIG1!1.67!45.44!OLIG1;;chr12:106976678..106976708,+!p2@RFX4!1.66!44.45!RFX4;;chr2:145277882..145277967,-!p3@ZEB2!1.65!73.15!ZEB2;;chr16:1031762..1031781,+!p1@SOX8!1.64!42.90!SOX8;;chr9:77112244..77112262,+!p1@RORB!1.62!45.72!RORB;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.62!40.65!POU3F3;;chr3:181429741..181429767,+!p2@SOX2!1.61!39.67!SOX2;;chr2:162272785..162272836,+!p1@TBR1!1.60!39.11!TBR1;;chr19:46800289..46800327,+!p2@HIF3A!1.57!36.57!HIF3A;;chr15:80696703..80696754,+!p1@ARNT2!1.56!46.14!ARNT2;;chr9:126774018..126774055,+!p1@LHX2!1.56!35.45!LHX2;;chr10:64134120..64134183,+!p1@ZNF365!1.54!40.09!ZNF365;;chr14:33403881..33403924,+!p1@NPAS3!1.53!32.78!NPAS3;;chr2:2334997..2335053,-!p1@MYT1L!1.52!32.07!MYT1L;;chrX:25034067..25034088,-!p1@ARX!1.52!32.07!ARX;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.52!31.79!SMARCE1;;chr6:19837592..19837621,+!p1@ID4!1.50!179.92!ID4;;chr12:26277956..26277980,-!p1@BHLHE41!1.50!105.36!BHLHE41;;chr8:53322304..53322340,-!p1@ST18!1.49!30.10!ST18;;chr11:113930425..113930471,+!p1@ZBTB16!1.48!41.78!ZBTB16;;chr10:119302232..119302265,+!p1@EMX2!1.48!29.40!EMX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.46!28.13!NKX6-2;;chr2:166326200..166326216,+!p1@CSRNP3!1.45!39.39!CSRNP3;;chr14:29236269..29236285,+!p3@FOXG1!1.45!27.29!FOXG1;;chr16:85932760..85932775,+!p1@IRF8!1.45!27.15!IRF8;;chr11:31832862..31832884,-!p2@PAX6!1.42!25.60!PAX6;;chr1:2461692..2461710,-!p1@HES5!1.42!25.04!HES5;;chr8:65492915..65492932,+!p1@BHLHE22!1.41!24.90!BHLHE22;;chr10:48355030..48355090,+!p1@ZNF488!1.39!29.96!ZNF488;;chr11:8102846..8102892,+!p1@TUB!1.38!32.07!TUB;;chr11:47400078..47400106,-!p1@SPI1!1.38!23.21!SPI1;;chr12:106976774..106976788,+!p1@RFX4!1.38!22.93!RFX4;;chr1:61548069..61548102,+!p3@NFIA!1.37!53.31!NFIA;;chr17:7492684..7492778,-!p2@SOX15!1.37!46.84!SOX15;;chr17:38219209..38219230,+!p1@THRA!1.36!272.48!THRA;;chr17:70117153..70117174,+!p1@SOX9!1.36!219.73!SOX9;;chr15:80735246..80735321,+!p3@ARNT2!1.36!21.80!ARNT2;;chr22:41763452..41763466,+!p2@TEF!1.35!21.24!TEF;;chr14:29234581..29234601,+!p2@FOXG1!1.34!21.10!FOXG1;;chr6:143266185..143266238,-!p2@HIVEP2!1.32!27.15!HIVEP2;;chr3:126076242..126076257,-!p1@KLF15!1.32!24.76!KLF15;;chr5:92920256..92920282,+!p7@NR2F1!1.29!22.37!NR2F1;;chr5:88178983..88179012,-!p1@MEF2C!1.28!137.72!MEF2C;;chr8:53322347..53322378,-!p2@ST18!1.27!17.72!ST18;;chr14:33403648..33403710,+!p3@NPAS3!1.27!17.72!NPAS3;;chr6:126112039..126112062,+!p8@NCOA7!1.26!20.54!NCOA7;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.23!16.18!ZBED1;;chr12:24102576..24102623,-!p2@SOX5!1.23!15.90!SOX5;;chr1:214161272..214161322,+!p1@PROX1!1.22!21.80!PROX1;;chr1:244219775..244219893,+!p2@ZNF238!1.21!20.96!ZNF238;;chr8:30890810..30890880,-!p1@PURG!1.21!15.33!PURG;;chr8:40755333..40755352,-!p1@ZMAT4!1.21!15.33!ZMAT4;;chrX:85969626..85969664,+!p1@DACH2!1.20!14.77!DACH2;;chr11:31832658..31832681,-!p1@PAX6!1.19!14.63!PAX6;;chr16:79634624..79634642,-!p1@MAF!1.18!55.71!MAF;;chr16:51185318..51185348,-!p2@SALL1!1.18!14.21!SALL1;;chr9:126773880..126773895,+!p2@LHX2!1.18!14.21!LHX2;;chr14:58798013..58798071,+!p2@ARID4A!1.18!14.21!ARID4A;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.93!POU3F3;;chr4:57522166..57522260,-!p2@HOPX!1.15!15.19!HOPX;;chr9:3525867..3525902,-!p3@RFX3!1.13!42.76!RFX3;;chr19:13135386..13135435,+!p4@NFIX!1.13!12.52!NFIX;;chr11:113930291..113930339,+!p2@ZBTB16!1.12!19.83!ZBTB16;;chr9:126774058..126774081,+!p3@LHX2!1.12!12.24!LHX2;;chr19:57352109..57352153,-!p2@ZIM2!1.12!12.10!ZIM2;;chr7:63505799..63505904,+!p1@ZNF727!1.11!11.96!ZNF727;;chr2:42721205..42721307,+!p4@MTA3!1.11!11.82!MTA3;;chr2:95963120..95963136,+!p2@KCNIP3!1.10!11.68!KCNIP3;;chr14:22005197..22005261,-!p3@SALL2!1.10!11.53!SALL2;;chr6:108487289..108487302,+!p1@NR2E1!1.10!11.53!NR2E1;;chr12:26277929..26277955,-!p3@BHLHE41!1.09!16.32!BHLHE41;;chr2:60781201..60781258,-!p3@BCL11A!1.09!11.39!BCL11A;;chr15:31658288..31658338,+!p4@KLF13!1.09!11.39!KLF13;;chr19:13135582..13135600,+!p3@NFIX!1.09!11.25!NFIX;;chr2:2328299..2328363,-!p3@MYT1L!1.09!11.25!MYT1L;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.25!PKNOX2;;chr19:38085768..38085821,+!p1@ZNF540!1.08!16.46!ZNF540;;chr21:39870339..39870443,-!p1@ERG!1.08!10.97!ERG;;chr12:103351444..103351461,+!p1@ASCL1!1.07!10.83!ASCL1;;chr2:182545234..182545252,-!p1@NEUROD1!1.07!10.83!NEUROD1;;chr17:38219184..38219195,+!p3@THRA!1.06!20.96!THRA;;chr3:24536253..24536328,-!p1@THRB!1.06!20.12!THRB;;chr14:33408072..33408114,+!p2@NPAS3!1.06!12.38!NPAS3;;chr8:106330656..106330684,+!p1@ZFPM2!1.05!26.87!ZFPM2;;chr16:79634595..79634620,-!p2@MAF!1.05!18.99!MAF;;chr5:71803177..71803255,-!p1@ZNF366!1.05!10.27!ZNF366;;chr7:31380292..31380351,-!p1@NEUROD6!1.05!10.13!NEUROD6;;chr18:52989031..52989079,-!p2@TCF4!1.04!23.63!TCF4;;chr12:24715376..24715432,-!p1@SOX5!1.04!12.80!SOX5;;chr11:113930401..113930422,+!p3@ZBTB16!1.04!9.85!ZBTB16;;chr11:31832807..31832823,-!p4@PAX6!1.04!9.85!PAX6;;chr21:34442584..34442587,+!p3@OLIG1!1.04!9.85!OLIG1;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.50!KLF15;;chr1:151032860..151032918,+!p1@MLLT11!1.02!115.07!MLLT11;;chr7:150974206..150974255,-!p1@SMARCD3!1.02!60.63!SMARCD3;;chr3:114819124..114819200,-!p3@ZBTB20!1.02!22.37!ZBTB20;;chr1:167298300..167298319,+!p2@POU2F1!1.02!9.57!POU2F1;;chr7:115670804..115670825,-!p1@TFEC!1.02!9.42!TFEC;;chr16:67197776..67197831,+!p4@HSF4!1.02!9.42!HSF4;;chr12:54785074..54785122,-!p2@ZNF385A!1.01!14.35!ZNF385A;;chr12:125003087..125003141,-!p4@NCOR2!1.01!11.96!NCOR2;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.25!ZBTB38;;chr15:80696666..80696700,+!p4@ARNT2!1.01!9.28!ARNT2;;chr17:38219143..38219154,+!p2@THRA!1.00!32.64!THRA;;chr9:3525910..3525955,-!p4@RFX3!1.00!27.71!RFX3;;chr1:61924375..61924380,+!p6@NFIA!1.00!12.66!NFIA;;chr19:57183114..57183145,-!p1@ZNF835!1.00!10.13!ZNF835;;chr1:40105299..40105326,-!p1@HEYL!1.00!9.00!HEYL;;chr3:187463179..187463201,-!p2@BCL6!0.99!36.71!BCL6;;chr3:114173720..114173794,-!p6@ZBTB20!0.99!8.86!ZBTB20;;chr12:106976656..106976672,+!p4@RFX4!0.99!8.86!RFX4;;chr1:8585945..8586056,-!p3@RERE!0.98!29.54!RERE;;chr8:106330696..106330719,+!p2@ZFPM2!0.98!10.97!ZFPM2;;chr6:126070769..126070801,+!p1@HEY2!0.98!9.99!HEY2;;chr7:73038839..73038862,-!p1@MLXIPL!0.98!8.58!MLXIPL;;chr8:93074803..93074845,-!p1@RUNX1T1!0.98!8.58!RUNX1T1;;chr16:67198633..67198671,+!p1@HSF4!0.98!8.58!HSF4;;chr2:63277948..63277974,+!p1@OTX1!0.98!8.58!OTX1;;chr2:68592406..68592424,+!p1@PLEK!0.98!8.58!PLEK;;chr5:178368186..178368238,+!p1@ZNF454!0.97!15.19!ZNF454;;chr9:14314946..14314983,-!p8@NFIB!0.97!8.44!NFIB;;chr14:29234870..29234930,+!p7@FOXG1!0.97!8.44!FOXG1;;chr12:103352277..103352324,+!p2@ASCL1!0.97!8.30!ASCL1;;chr3:181429641..181429650,+!p3@SOX2!0.97!8.30!SOX2;;chr5:88081308..88081333,-!p8@MEF2C!0.97!8.30!MEF2C;;chr8:10588010..10588030,-!p1@SOX7!0.97!8.30!SOX7;;chr18:53070846..53070902,-!p6@TCF4!0.97!8.30!TCF4;;chr19:30863271..30863338,+!p1@ZNF536!0.97!8.30!ZNF536;;chr16:51185172..51185197,-!p1@SALL1!0.96!8.16!SALL1;;chr16:67197654..67197716,+!p3@HSF4!0.96!8.16!HSF4;;chr13:100623375..100623425,-!p1@ZIC5!0.96!8.16!ZIC5;;chr9:3525727..3525828,-!p2@RFX3!0.95!20.96!RFX3;;chr7:64023410..64023428,-!p2@ZNF680!0.95!12.80!ZNF680;;chr10:38265517..38265591,-!p1@ZNF25!0.94!30.81!ZNF25;;chr14:73360799..73360817,-!p1@DPF3!0.94!27.85!DPF3;;chr11:31839488..31839515,-!p3@PAX6!0.94!7.74!PAX6;;chr13:95364784..95364806,-!p1@SOX21!0.94!7.74!SOX21;;chr17:17726907..17726958,-!p2@SREBF1!0.93!48.81!SREBF1;;chr20:3388541..3388575,-!p2@C20orf194!0.93!30.38!C20orf194;;chr19:53636125..53636178,-!p1@ZNF415!0.93!21.94!ZNF415;;chr2:2335109..2335134,-!p2@MYT1L!0.93!7.60!MYT1L;;chr8:65493017..65493035,+!p4@BHLHE22!0.93!7.46!BHLHE22;;chr14:21994337..21994442,-!p1@SALL2!0.92!21.10!SALL2;;chr2:113057415..113057477,+!p3@ZC3H6!0.92!9.57!ZC3H6;;chr2:73520667..73520683,-!p1@EGR4!0.92!7.31!EGR4;;chr15:31618903..31618962,+!p3@KLF13!0.91!20.40!KLF13;;chr8:80679993..80680011,-!p1@HEY1!0.91!10.41!HEY1;;chr15:80696836..80696853,+!p7@ARNT2!0.91!7.17!ARNT2;;chr16:67198683..67198698,+!p2@HSF4!0.91!7.17!HSF4;;chr9:77112225..77112238,+!p2@RORB!0.91!7.17!RORB;;chr17:38256822..38256851,-!p1@NR1D1!0.90!57.67!NR1D1;;chr5:88179017..88179046,-!p2@MEF2C!0.90!28.84!MEF2C;;chr15:57511609..57511651,+!p2@TCF12!0.90!11.96!TCF12;;chr19:57019215..57019250,+!p1@ZNF471!0.90!10.69!ZNF471;;chr19:58545454..58545498,+!p1@ZSCAN1!0.90!7.03!ZSCAN1;;chr1:2985760..2985774,+!p1@PRDM16!0.90!7.03!PRDM16;;chr8:22550530..22550609,-!p2@EGR3!0.90!7.03!EGR3;;chr13:100634031..100634045,+!p1@ZIC2!0.90!7.03!ZIC2;;chrX:82763292..82763317,+!p1@POU3F4!0.90!7.03!POU3F4;;chr1:244214577..244214593,+!p1@ZNF238!0.90!6.89!ZNF238;;chr17:4890919..4890985,-!p1@CAMTA2!0.89!67.24!CAMTA2;;chr13:45151434..45151507,-!p3@TSC22D1!0.89!39.25!TSC22D1;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.65!NR2F1;;chr1:61547894..61547968,+!p2@NFIA!0.89!20.40!NFIA;;chrX:70315688..70315709,+!p1@FOXO4!0.89!16.32!FOXO4;;chr7:6655225..6655279,+!p1@ENST00000457543!0.89!10.41!ZNF853;;chr20:50159198..50159299,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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001871;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg19.nobarcode.rdna.fa.gz
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg38.nobarcode.ctss.bed.gz
|id=FF:10151-102I7
|is_a=EFO:0002091;;FF:0000002;;FF:0010151
|is_obsolete=
|library_id=CNhs12311
|library_id_phase_based=2:CNhs12311
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10151
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10151
|name=amygdala, adult, donor10252
|namespace=FANTOM5
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|rna_box=102
|rna_catalog_number=
|rna_concentration=0.79493
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.2
|rna_od260/280=2.06
|rna_position=I7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=102I7
|rna_weight_ug=59.61975
|sample_age=76
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=Peter Heutink
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor: 10252
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.850659674102e-282!GO:0005737;cytoplasm;6.30522867932427e-147!GO:0043226;organelle;3.17386052282538e-97!GO:0043229;intracellular organelle;8.90729435637343e-97!GO:0043227;membrane-bound organelle;4.52334187291667e-90!GO:0043231;intracellular membrane-bound organelle;6.83883873698074e-90!GO:0044444;cytoplasmic part;7.67597983030042e-89!GO:0005515;protein binding;1.10990527379022e-74!GO:0044422;organelle part;4.60657012347414e-59!GO:0044446;intracellular organelle part;3.96283068767069e-58!GO:0032991;macromolecular complex;8.8453325060685e-57!GO:0016043;cellular component organization and biogenesis;9.42418098711389e-48!GO:0030529;ribonucleoprotein complex;1.1714824886242e-37!GO:0003723;RNA binding;3.75128630798445e-37!GO:0033036;macromolecule localization;3.75323660747773e-36!GO:0015031;protein transport;1.40418231411422e-35!GO:0005739;mitochondrion;2.37895477989885e-34!GO:0008104;protein localization;1.18467894462867e-32!GO:0045184;establishment of protein localization;3.68619612970576e-32!GO:0043234;protein complex;1.36870637038966e-31!GO:0031090;organelle membrane;1.44868225796339e-31!GO:0043233;organelle lumen;1.80914068688301e-30!GO:0031974;membrane-enclosed lumen;1.80914068688301e-30!GO:0044428;nuclear part;2.30688471621277e-30!GO:0046907;intracellular transport;3.06222042616948e-29!GO:0016192;vesicle-mediated transport;1.00101480293496e-27!GO:0051649;establishment of cellular localization;1.1312567667327e-27!GO:0051641;cellular localization;2.40703418866499e-27!GO:0044238;primary metabolic process;1.55558964924958e-25!GO:0016071;mRNA metabolic process;1.76707769284243e-25!GO:0044429;mitochondrial part;3.55264963185533e-25!GO:0005634;nucleus;6.99788405136455e-25!GO:0043170;macromolecule metabolic process;6.99788405136455e-25!GO:0019538;protein metabolic process;6.67554557006692e-24!GO:0044237;cellular metabolic process;7.70117492055639e-24!GO:0031975;envelope;2.69351391699438e-23!GO:0031967;organelle envelope;3.66343006703355e-23!GO:0005829;cytosol;3.84780433394331e-23!GO:0008380;RNA splicing;5.74521585362851e-23!GO:0006396;RNA processing;2.02317818358537e-22!GO:0006886;intracellular protein transport;5.5946623104489e-21!GO:0044260;cellular macromolecule metabolic process;1.0378220707248e-20!GO:0006397;mRNA processing;1.66346522202729e-20!GO:0006996;organelle organization and biogenesis;4.37961317420582e-20!GO:0044267;cellular protein metabolic process;4.84813467148346e-20!GO:0005840;ribosome;1.16203042452634e-19!GO:0006119;oxidative phosphorylation;2.20307908019562e-19!GO:0031981;nuclear lumen;4.1036998967522e-19!GO:0005740;mitochondrial envelope;1.72296384116881e-18!GO:0031966;mitochondrial membrane;2.8442355209244e-18!GO:0005794;Golgi apparatus;3.24636883506893e-18!GO:0000166;nucleotide binding;1.59655891123103e-17!GO:0031982;vesicle;2.51546366230547e-17!GO:0019866;organelle inner membrane;8.13587222656404e-17!GO:0043283;biopolymer metabolic process;1.41980565465295e-16!GO:0031410;cytoplasmic vesicle;1.41980565465295e-16!GO:0065003;macromolecular complex assembly;3.12392143114735e-16!GO:0031988;membrane-bound vesicle;3.57560337107387e-16!GO:0005743;mitochondrial inner membrane;4.06314328923655e-16!GO:0006412;translation;7.16374913507257e-16!GO:0005681;spliceosome;1.60801261484216e-15!GO:0016023;cytoplasmic membrane-bound vesicle;1.84373078950564e-15!GO:0003735;structural constituent of ribosome;2.97305901726209e-15!GO:0044455;mitochondrial membrane part;2.37247391206105e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.14926378296365e-14!GO:0022607;cellular component assembly;3.33161166923216e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;3.63387630245998e-14!GO:0016462;pyrophosphatase activity;3.7066151600336e-14!GO:0006512;ubiquitin cycle;5.56761023443038e-14!GO:0043412;biopolymer modification;5.96476417167734e-14!GO:0043687;post-translational protein modification;7.46127753923085e-14!GO:0017111;nucleoside-triphosphatase activity;1.40493223127306e-13!GO:0045045;secretory pathway;1.46893233905641e-13!GO:0005746;mitochondrial respiratory chain;1.69799841114327e-13!GO:0006464;protein modification process;2.48773254010096e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.50886502313159e-13!GO:0032553;ribonucleotide binding;2.62034680558919e-13!GO:0032555;purine ribonucleotide binding;2.62034680558919e-13!GO:0007264;small GTPase mediated signal transduction;2.62094670989579e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.28079143796176e-13!GO:0003954;NADH dehydrogenase activity;3.28079143796176e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.28079143796176e-13!GO:0033279;ribosomal subunit;4.00529816945992e-13!GO:0030695;GTPase regulator activity;6.58589639063768e-13!GO:0005654;nucleoplasm;7.5202727070001e-13!GO:0017076;purine nucleotide binding;2.9028049534372e-12!GO:0010467;gene expression;6.75961697134935e-12!GO:0048770;pigment granule;6.75961697134935e-12!GO:0042470;melanosome;6.75961697134935e-12!GO:0044451;nucleoplasm part;8.37428521525339e-12!GO:0009058;biosynthetic process;1.0676568560305e-11!GO:0006457;protein folding;1.58339893973836e-11!GO:0006793;phosphorus metabolic process;1.80647447274959e-11!GO:0006796;phosphate metabolic process;1.80647447274959e-11!GO:0008134;transcription factor binding;2.69568044328779e-11!GO:0016874;ligase activity;3.05385934315653e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.05385934315653e-11!GO:0045271;respiratory chain complex I;3.05385934315653e-11!GO:0005747;mitochondrial respiratory chain complex I;3.05385934315653e-11!GO:0009059;macromolecule biosynthetic process;4.01990879027218e-11!GO:0012505;endomembrane system;4.44856007022704e-11!GO:0042775;organelle ATP synthesis coupled electron transport;6.1774720194856e-11!GO:0042773;ATP synthesis coupled electron transport;6.1774720194856e-11!GO:0048193;Golgi vesicle transport;7.34127135894967e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.09238516307586e-11!GO:0005083;small GTPase regulator activity;1.07152914625585e-10!GO:0043228;non-membrane-bound organelle;1.37877379417312e-10!GO:0043232;intracellular non-membrane-bound organelle;1.37877379417312e-10!GO:0044445;cytosolic part;1.59582310183698e-10!GO:0044249;cellular biosynthetic process;2.34221282317072e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.77974158139068e-10!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.14723000472944e-10!GO:0006511;ubiquitin-dependent protein catabolic process;3.3399341683036e-10!GO:0008092;cytoskeletal protein binding;3.72071155254364e-10!GO:0019941;modification-dependent protein catabolic process;4.02314263728184e-10!GO:0043632;modification-dependent macromolecule catabolic process;4.02314263728184e-10!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.07069714543241e-10!GO:0044257;cellular protein catabolic process;6.66830808570443e-10!GO:0007010;cytoskeleton organization and biogenesis;6.95149414331703e-10!GO:0007399;nervous system development;7.49592920983395e-10!GO:0003924;GTPase activity;9.15643944485429e-10!GO:0030135;coated vesicle;9.66771484119905e-10!GO:0005768;endosome;1.25802264578313e-09!GO:0019829;cation-transporting ATPase activity;1.38007953167523e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.48259781224565e-09!GO:0044265;cellular macromolecule catabolic process;1.63291707854044e-09!GO:0006605;protein targeting;1.76532267374023e-09!GO:0022618;protein-RNA complex assembly;1.76532267374023e-09!GO:0016044;membrane organization and biogenesis;2.02272470941038e-09!GO:0051082;unfolded protein binding;2.59606923521935e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.64972922848442e-09!GO:0006810;transport;3.11338951140116e-09!GO:0032940;secretion by cell;4.18224040988724e-09!GO:0031980;mitochondrial lumen;4.61791295291219e-09!GO:0005759;mitochondrial matrix;4.61791295291219e-09!GO:0000502;proteasome complex (sensu Eukaryota);5.19542219572246e-09!GO:0008565;protein transporter activity;5.31657572389639e-09!GO:0030036;actin cytoskeleton organization and biogenesis;8.13306753595335e-09!GO:0005525;GTP binding;9.5052788227752e-09!GO:0043285;biopolymer catabolic process;1.05583614616982e-08!GO:0016604;nuclear body;1.69904023287764e-08!GO:0016310;phosphorylation;1.94262838837127e-08!GO:0008135;translation factor activity, nucleic acid binding;2.05418562210562e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.05956449423985e-08!GO:0006461;protein complex assembly;3.75280670214822e-08!GO:0019899;enzyme binding;4.16969706144813e-08!GO:0030163;protein catabolic process;4.79767350849743e-08!GO:0032559;adenyl ribonucleotide binding;6.31142842077577e-08!GO:0008639;small protein conjugating enzyme activity;6.92507618374196e-08!GO:0016607;nuclear speck;7.72128428498179e-08!GO:0004842;ubiquitin-protein ligase activity;9.12681384616723e-08!GO:0051179;localization;9.49116600923171e-08!GO:0015986;ATP synthesis coupled proton transport;9.49116600923171e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.49116600923171e-08!GO:0007242;intracellular signaling cascade;1.00711517465464e-07!GO:0048523;negative regulation of cellular process;1.11792763130291e-07!GO:0015935;small ribosomal subunit;1.24607261137911e-07!GO:0030029;actin filament-based process;1.28669600882711e-07!GO:0044431;Golgi apparatus part;1.32070170453264e-07!GO:0043005;neuron projection;1.52439399883219e-07!GO:0005524;ATP binding;1.92462108092384e-07!GO:0032561;guanyl ribonucleotide binding;2.16506005104902e-07!GO:0019001;guanyl nucleotide binding;2.16506005104902e-07!GO:0019787;small conjugating protein ligase activity;2.16506005104902e-07!GO:0019717;synaptosome;2.33112221333405e-07!GO:0009057;macromolecule catabolic process;3.25910773219013e-07!GO:0031252;leading edge;3.79622456741176e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.87727864461689e-07!GO:0030554;adenyl nucleotide binding;5.05244469459622e-07!GO:0051234;establishment of localization;5.08677296991497e-07!GO:0006913;nucleocytoplasmic transport;5.49961359570466e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;5.9979582210684e-07!GO:0000375;RNA splicing, via transesterification reactions;5.9979582210684e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.9979582210684e-07!GO:0044248;cellular catabolic process;6.72421724130843e-07!GO:0030136;clathrin-coated vesicle;8.57170683043687e-07!GO:0006446;regulation of translational initiation;8.74550330199946e-07!GO:0005783;endoplasmic reticulum;8.98492786697203e-07!GO:0007265;Ras protein signal transduction;9.15103511544033e-07!GO:0051169;nuclear transport;9.24783146443254e-07!GO:0008047;enzyme activator activity;1.1739597421002e-06!GO:0044440;endosomal part;1.40255257625457e-06!GO:0010008;endosome membrane;1.40255257625457e-06!GO:0015630;microtubule cytoskeleton;1.76288703144371e-06!GO:0008287;protein serine/threonine phosphatase complex;1.87472269178017e-06!GO:0046034;ATP metabolic process;1.89689796938276e-06!GO:0015934;large ribosomal subunit;2.49954683080021e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.8086307784868e-06!GO:0003712;transcription cofactor activity;2.82300580628529e-06!GO:0006897;endocytosis;3.04281993460432e-06!GO:0010324;membrane invagination;3.04281993460432e-06!GO:0048519;negative regulation of biological process;3.2570156056919e-06!GO:0006754;ATP biosynthetic process;3.50368952501276e-06!GO:0006753;nucleoside phosphate metabolic process;3.50368952501276e-06!GO:0051186;cofactor metabolic process;3.51100715015864e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.51767303673921e-06!GO:0048475;coated membrane;3.71783173973612e-06!GO:0030117;membrane coat;3.71783173973612e-06!GO:0005096;GTPase activator activity;3.7344208839815e-06!GO:0016881;acid-amino acid ligase activity;3.80997372211562e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.31122794063038e-06!GO:0015631;tubulin binding;4.4278888056969e-06!GO:0006413;translational initiation;4.90969034836762e-06!GO:0051056;regulation of small GTPase mediated signal transduction;5.01937346548252e-06!GO:0000902;cell morphogenesis;5.15259207047911e-06!GO:0032989;cellular structure morphogenesis;5.15259207047911e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.23998659395276e-06!GO:0009144;purine nucleoside triphosphate metabolic process;5.23998659395276e-06!GO:0048471;perinuclear region of cytoplasm;5.97608387372184e-06!GO:0005730;nucleolus;5.98018780588221e-06!GO:0003779;actin binding;6.09941250691894e-06!GO:0003743;translation initiation factor activity;6.562535809755e-06!GO:0009199;ribonucleoside triphosphate metabolic process;7.5897360649117e-06!GO:0031965;nuclear membrane;7.7197983026686e-06!GO:0009060;aerobic respiration;7.95081743176545e-06!GO:0005905;coated pit;8.63980979941855e-06!GO:0009141;nucleoside triphosphate metabolic process;8.71299832266575e-06!GO:0015078;hydrogen ion transmembrane transporter activity;9.66006712308534e-06!GO:0005635;nuclear envelope;1.02098884655174e-05!GO:0016564;transcription repressor activity;1.06410865652245e-05!GO:0000139;Golgi membrane;1.06500080059918e-05!GO:0005770;late endosome;1.20210194175772e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.3460143522093e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.3460143522093e-05!GO:0030027;lamellipodium;1.44509471362638e-05!GO:0009150;purine ribonucleotide metabolic process;1.44938633396438e-05!GO:0006163;purine nucleotide metabolic process;1.56057904602126e-05!GO:0016070;RNA metabolic process;1.78132994756887e-05!GO:0042623;ATPase activity, coupled;1.8084887395086e-05!GO:0045333;cellular respiration;1.86157280926334e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.86531634492754e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.86859415160502e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.99715956553175e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.99715956553175e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.05855256609191e-05!GO:0016887;ATPase activity;2.08216712822541e-05!GO:0006164;purine nucleotide biosynthetic process;2.10045431806208e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;2.1644558485707e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.27316577080068e-05!GO:0005761;mitochondrial ribosome;2.85712227614118e-05!GO:0000313;organellar ribosome;2.85712227614118e-05!GO:0017038;protein import;3.03437735273836e-05!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.08726240326765e-05!GO:0016568;chromatin modification;3.14373443770501e-05!GO:0009055;electron carrier activity;3.14373443770501e-05!GO:0005769;early endosome;3.45982259359634e-05!GO:0032446;protein modification by small protein conjugation;3.45982259359634e-05!GO:0005874;microtubule;3.59019626801648e-05!GO:0045259;proton-transporting ATP synthase complex;3.75752557285564e-05!GO:0045786;negative regulation of progression through cell cycle;3.98496798519654e-05!GO:0005085;guanyl-nucleotide exchange factor activity;5.00889882493286e-05!GO:0009259;ribonucleotide metabolic process;5.71371864870784e-05!GO:0030425;dendrite;5.84461327687617e-05!GO:0016567;protein ubiquitination;6.05445941145293e-05!GO:0009966;regulation of signal transduction;6.65101382437451e-05!GO:0050789;regulation of biological process;6.73449756235989e-05!GO:0051128;regulation of cellular component organization and biogenesis;6.85055135340109e-05!GO:0006099;tricarboxylic acid cycle;7.64202569865456e-05!GO:0046356;acetyl-CoA catabolic process;7.64202569865456e-05!GO:0006323;DNA packaging;8.27542774699731e-05!GO:0051246;regulation of protein metabolic process;9.64664494025097e-05!GO:0009109;coenzyme catabolic process;0.000125823294584854!GO:0016301;kinase activity;0.000129830726035161!GO:0030120;vesicle coat;0.000133071916804729!GO:0030662;coated vesicle membrane;0.000133071916804729!GO:0050794;regulation of cellular process;0.000138529618676841!GO:0009260;ribonucleotide biosynthetic process;0.000145159074948919!GO:0006366;transcription from RNA polymerase II promoter;0.000148268174521932!GO:0005798;Golgi-associated vesicle;0.000155389020551952!GO:0004674;protein serine/threonine kinase activity;0.000162398583598775!GO:0045055;regulated secretory pathway;0.000168356395136325!GO:0000245;spliceosome assembly;0.000174932992663438!GO:0005793;ER-Golgi intermediate compartment;0.000185021915102887!GO:0003714;transcription corepressor activity;0.000185689734357826!GO:0048489;synaptic vesicle transport;0.000188925449250933!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000193817033104297!GO:0015399;primary active transmembrane transporter activity;0.000193817033104297!GO:0004721;phosphoprotein phosphatase activity;0.000208253530761677!GO:0000159;protein phosphatase type 2A complex;0.000208561085110638!GO:0006732;coenzyme metabolic process;0.000210280884810499!GO:0008219;cell death;0.000221654875619932!GO:0016265;death;0.000221654875619932!GO:0000151;ubiquitin ligase complex;0.000235849303622984!GO:0008017;microtubule binding;0.000251155591578227!GO:0016311;dephosphorylation;0.00025978437566182!GO:0051187;cofactor catabolic process;0.000262346080214474!GO:0044432;endoplasmic reticulum part;0.000342341425119698!GO:0019208;phosphatase regulator activity;0.000345140375853867!GO:0006084;acetyl-CoA metabolic process;0.000366315782642559!GO:0008154;actin polymerization and/or depolymerization;0.000374189428228461!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000374669483672165!GO:0043492;ATPase activity, coupled to movement of substances;0.000384809657355992!GO:0046578;regulation of Ras protein signal transduction;0.000386666485723039!GO:0005773;vacuole;0.000405347030736771!GO:0007266;Rho protein signal transduction;0.000405347030736771!GO:0008021;synaptic vesicle;0.000428140755896884!GO:0031072;heat shock protein binding;0.000442066553986087!GO:0022890;inorganic cation transmembrane transporter activity;0.000465663002035424!GO:0006403;RNA localization;0.000467198590706588!GO:0007269;neurotransmitter secretion;0.000468050045469234!GO:0012501;programmed cell death;0.000479068325572525!GO:0044453;nuclear membrane part;0.000499981314287594!GO:0006613;cotranslational protein targeting to membrane;0.000502458137694519!GO:0008601;protein phosphatase type 2A regulator activity;0.000512751032788609!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000534829428452599!GO:0006259;DNA metabolic process;0.000535843027682748!GO:0006915;apoptosis;0.000548731504778716!GO:0048468;cell development;0.000564919786299414!GO:0003729;mRNA binding;0.000583936119903696!GO:0050657;nucleic acid transport;0.000594289450685838!GO:0051236;establishment of RNA localization;0.000594289450685838!GO:0050658;RNA transport;0.000594289450685838!GO:0006606;protein import into nucleus;0.000612926974197472!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000624427699702386!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000640888357144903!GO:0043623;cellular protein complex assembly;0.00064142406178021!GO:0005643;nuclear pore;0.000718503762074288!GO:0016197;endosome transport;0.000736314503311333!GO:0016791;phosphoric monoester hydrolase activity;0.000758723564843813!GO:0030133;transport vesicle;0.00076407336241246!GO:0006888;ER to Golgi vesicle-mediated transport;0.000796164798144377!GO:0019902;phosphatase binding;0.000814006745462203!GO:0030118;clathrin coat;0.000820340553114072!GO:0050767;regulation of neurogenesis;0.00082054470073615!GO:0051170;nuclear import;0.000853588786334904!GO:0006470;protein amino acid dephosphorylation;0.000887363874898569!GO:0009892;negative regulation of metabolic process;0.000898150018799946!GO:0005741;mitochondrial outer membrane;0.00101540357794479!GO:0009056;catabolic process;0.00106914133115275!GO:0019904;protein domain specific binding;0.00107568385651818!GO:0022406;membrane docking;0.00113432481272534!GO:0048278;vesicle docking;0.00113432481272534!GO:0003724;RNA helicase activity;0.00123027850655335!GO:0005938;cell cortex;0.0012541651478938!GO:0006607;NLS-bearing substrate import into nucleus;0.00127284705449697!GO:0019888;protein phosphatase regulator activity;0.00134432358204854!GO:0006904;vesicle docking during exocytosis;0.00136665532644419!GO:0031901;early endosome membrane;0.00139618104221972!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00151499574126875!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00151499574126875!GO:0016050;vesicle organization and biogenesis;0.00162684069852012!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00175003710032398!GO:0030532;small nuclear ribonucleoprotein complex;0.00179483570088574!GO:0043566;structure-specific DNA binding;0.00179483570088574!GO:0008654;phospholipid biosynthetic process;0.00180304286311071!GO:0008026;ATP-dependent helicase activity;0.00180914756837771!GO:0016481;negative regulation of transcription;0.00189908823835371!GO:0006752;group transfer coenzyme metabolic process;0.00190862191109024!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00197257938873135!GO:0006650;glycerophospholipid metabolic process;0.00197257938873135!GO:0004722;protein serine/threonine phosphatase activity;0.00197257938873135!GO:0051188;cofactor biosynthetic process;0.00200905814801638!GO:0051087;chaperone binding;0.00205282561804985!GO:0005100;Rho GTPase activator activity;0.0021175061005618!GO:0030867;rough endoplasmic reticulum membrane;0.00213328214362662!GO:0030030;cell projection organization and biogenesis;0.00214435325726507!GO:0048858;cell projection morphogenesis;0.00214435325726507!GO:0032990;cell part morphogenesis;0.00214435325726507!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00216674876604437!GO:0043209;myelin sheath;0.00216800298168175!GO:0006402;mRNA catabolic process;0.00242000539919759!GO:0031902;late endosome membrane;0.00248056587149283!GO:0030427;site of polarized growth;0.00251903392102491!GO:0003676;nucleic acid binding;0.00255292777274165!GO:0005789;endoplasmic reticulum membrane;0.00268837476084819!GO:0030426;growth cone;0.00271215491473863!GO:0019226;transmission of nerve impulse;0.00277786749033374!GO:0001726;ruffle;0.0028207198137786!GO:0031968;organelle outer membrane;0.0028831330720357!GO:0003713;transcription coactivator activity;0.00295242494238243!GO:0051726;regulation of cell cycle;0.00304741713858364!GO:0000323;lytic vacuole;0.00304741713858364!GO:0005764;lysosome;0.00304741713858364!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00304741713858364!GO:0004812;aminoacyl-tRNA ligase activity;0.00304741713858364!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00304741713858364!GO:0005839;proteasome core complex (sensu Eukaryota);0.00326393779683126!GO:0016740;transferase activity;0.00327092961276833!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0033043267605502!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0033043267605502!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0033043267605502!GO:0048699;generation of neurons;0.0033043267605502!GO:0019867;outer membrane;0.00336208555212805!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0034995464837835!GO:0006887;exocytosis;0.0034995464837835!GO:0004386;helicase activity;0.00363861902756346!GO:0043069;negative regulation of programmed cell death;0.00382340798617112!GO:0005875;microtubule associated complex;0.00389358675982245!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00392431085535177!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00409642779538235!GO:0030041;actin filament polymerization;0.00415101910837759!GO:0008139;nuclear localization sequence binding;0.00417402712969717!GO:0007019;microtubule depolymerization;0.00419401019144913!GO:0003697;single-stranded DNA binding;0.00423917192654454!GO:0008286;insulin receptor signaling pathway;0.00429952129947034!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00430581394674812!GO:0019198;transmembrane receptor protein phosphatase activity;0.00430581394674812!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00432522523144146!GO:0006916;anti-apoptosis;0.0043899994747954!GO:0000074;regulation of progression through cell cycle;0.0044560245144419!GO:0043066;negative regulation of apoptosis;0.0044572137280197!GO:0005048;signal sequence binding;0.00456653225074423!GO:0015980;energy derivation by oxidation of organic compounds;0.00462485995173413!GO:0005791;rough endoplasmic reticulum;0.00476011803434102!GO:0051276;chromosome organization and biogenesis;0.00483985854264763!GO:0051261;protein depolymerization;0.00489105612140384!GO:0030182;neuron differentiation;0.00491490199610607!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00505558604404086!GO:0022008;neurogenesis;0.00509270560444409!GO:0051028;mRNA transport;0.00509286905711585!GO:0006892;post-Golgi vesicle-mediated transport;0.00513677668161512!GO:0031324;negative regulation of cellular metabolic process;0.00535975547498372!GO:0032011;ARF protein signal transduction;0.00560084544618657!GO:0032012;regulation of ARF protein signal transduction;0.00560084544618657!GO:0005774;vacuolar membrane;0.00560084544618657!GO:0043038;amino acid activation;0.00567242760353732!GO:0006418;tRNA aminoacylation for protein translation;0.00567242760353732!GO:0043039;tRNA aminoacylation;0.00567242760353732!GO:0033673;negative regulation of kinase activity;0.00589021802027643!GO:0006469;negative regulation of protein kinase activity;0.00589021802027643!GO:0008361;regulation of cell size;0.00593768297746681!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00597176143484883!GO:0007049;cell cycle;0.00597176143484883!GO:0007017;microtubule-based process;0.00604065328757856!GO:0043087;regulation of GTPase activity;0.00606717845706539!GO:0006891;intra-Golgi vesicle-mediated transport;0.00610114592413078!GO:0005099;Ras GTPase activator activity;0.00610566728130977!GO:0046467;membrane lipid biosynthetic process;0.00615329967669678!GO:0045892;negative regulation of transcription, DNA-dependent;0.00619916946445841!GO:0006612;protein targeting to membrane;0.00659411069325104!GO:0050839;cell adhesion molecule binding;0.00673193326940271!GO:0006414;translational elongation;0.00692062561502621!GO:0048487;beta-tubulin binding;0.0069779297849442!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00703977979684018!GO:0055083;monovalent inorganic anion homeostasis;0.00703977979684018!GO:0055064;chloride ion homeostasis;0.00703977979684018!GO:0030644;cellular chloride ion homeostasis;0.00703977979684018!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00708602121559214!GO:0009108;coenzyme biosynthetic process;0.00711869509813558!GO:0005885;Arp2/3 protein complex;0.00743041992047465!GO:0042802;identical protein binding;0.00743041992047465!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00743041992047465!GO:0050811;GABA receptor binding;0.00769378543124535!GO:0005516;calmodulin binding;0.00787460903771395!GO:0007272;ensheathment of neurons;0.0079689286169648!GO:0008366;axon ensheathment;0.0079689286169648!GO:0005869;dynactin complex;0.00814948317973683!GO:0005813;centrosome;0.00833087426322059!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0085300952970069!GO:0004667;prostaglandin-D synthase activity;0.0085300952970069!GO:0050802;circadian sleep/wake cycle, sleep;0.0085300952970069!GO:0022410;circadian sleep/wake cycle process;0.0085300952970069!GO:0042749;regulation of circadian sleep/wake cycle;0.0085300952970069!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00862045014169165!GO:0019887;protein kinase regulator activity;0.00862590774512307!GO:0051168;nuclear export;0.00871318589539327!GO:0001505;regulation of neurotransmitter levels;0.00871805325930912!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00891612874237232!GO:0051920;peroxiredoxin activity;0.00960938092534834!GO:0044448;cell cortex part;0.0099061586313457!GO:0001508;regulation of action potential;0.0104189501036076!GO:0012506;vesicle membrane;0.0106422784303812!GO:0065007;biological regulation;0.0109734700050351!GO:0016049;cell growth;0.0111966625971725!GO:0004672;protein kinase activity;0.0112418733958436!GO:0051348;negative regulation of transferase activity;0.0112418733958436!GO:0031114;regulation of microtubule depolymerization;0.0115827243508522!GO:0007026;negative regulation of microtubule depolymerization;0.0115827243508522!GO:0042578;phosphoric ester hydrolase activity;0.0116760126934634!GO:0008186;RNA-dependent ATPase activity;0.0116782612851559!GO:0030424;axon;0.0118202096866717!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0119041319078022!GO:0033043;regulation of organelle organization and biogenesis;0.0119041319078022!GO:0000904;cellular morphogenesis during differentiation;0.0120990681719371!GO:0030384;phosphoinositide metabolic process;0.01212501423919!GO:0051427;hormone receptor binding;0.0123829900623137!GO:0016363;nuclear matrix;0.0124981969452509!GO:0030660;Golgi-associated vesicle membrane;0.0129267923501969!GO:0004298;threonine endopeptidase activity;0.0131780769424865!GO:0048167;regulation of synaptic plasticity;0.0133297486930304!GO:0065009;regulation of a molecular function;0.0134305851792432!GO:0006333;chromatin assembly or disassembly;0.0136138705399379!GO:0006643;membrane lipid metabolic process;0.0137488446021399!GO:0051020;GTPase binding;0.0139788783980844!GO:0000059;protein import into nucleus, docking;0.0140856632609368!GO:0043021;ribonucleoprotein binding;0.0142875935510085!GO:0019903;protein phosphatase binding;0.0142875935510085!GO:0005765;lysosomal membrane;0.0143280873789083!GO:0048666;neuron development;0.0144368526100473!GO:0046488;phosphatidylinositol metabolic process;0.0144368526100473!GO:0048667;neuron morphogenesis during differentiation;0.0145655087350411!GO:0048812;neurite morphogenesis;0.0145655087350411!GO:0030742;GTP-dependent protein binding;0.0150925276712315!GO:0030258;lipid modification;0.0153419374618804!GO:0031175;neurite development;0.0157115223435677!GO:0048500;signal recognition particle;0.0163636959313335!GO:0007243;protein kinase cascade;0.0165786503647298!GO:0004183;carboxypeptidase E activity;0.0168216461063073!GO:0030070;insulin processing;0.0168216461063073!GO:0005092;GDP-dissociation inhibitor activity;0.0168917767473124!GO:0051789;response to protein stimulus;0.0171302631049294!GO:0006986;response to unfolded protein;0.0171302631049294!GO:0030658;transport vesicle membrane;0.0177887147359159!GO:0006468;protein amino acid phosphorylation;0.0179106240596806!GO:0006401;RNA catabolic process;0.0183039259616413!GO:0035035;histone acetyltransferase binding;0.018407931541824!GO:0044437;vacuolar part;0.0185580902807082!GO:0005815;microtubule organizing center;0.0187707189400279!GO:0035257;nuclear hormone receptor binding;0.0198591851356432!GO:0007050;cell cycle arrest;0.0200292922800091!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0201099876807316!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0201099876807316!GO:0015629;actin cytoskeleton;0.0201099876807316!GO:0000062;acyl-CoA binding;0.0202378068951592!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0202902897040268!GO:0019207;kinase regulator activity;0.0203728833230405!GO:0045296;cadherin binding;0.0203728833230405!GO:0030054;cell junction;0.0204017414260004!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0209643422590139!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0220470704065033!GO:0043488;regulation of mRNA stability;0.0222896902587208!GO:0043487;regulation of RNA stability;0.0222896902587208!GO:0003746;translation elongation factor activity;0.0226250858092742!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0227263034301973!GO:0008022;protein C-terminus binding;0.0228406183634322!GO:0030132;clathrin coat of coated pit;0.0228406183634322!GO:0017166;vinculin binding;0.0239168949856512!GO:0044433;cytoplasmic vesicle part;0.0242283610801431!GO:0046930;pore complex;0.0242283610801431!GO:0050803;regulation of synapse structure and activity;0.024368583176551!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0244326223687017!GO:0001666;response to hypoxia;0.0244517345510236!GO:0043086;negative regulation of catalytic activity;0.0246735337916214!GO:0030137;COPI-coated vesicle;0.024891074517465!GO:0030031;cell projection biogenesis;0.0249041501400354!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.024946974234321!GO:0008088;axon cargo transport;0.0251078610102107!GO:0019894;kinesin binding;0.0252205040955141!GO:0065002;intracellular protein transport across a membrane;0.0254404236730884!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0266960295785836!GO:0000118;histone deacetylase complex;0.0268242818039023!GO:0030125;clathrin vesicle coat;0.0274547526879407!GO:0030665;clathrin coated vesicle membrane;0.0274547526879407!GO:0004004;ATP-dependent RNA helicase activity;0.0275874285290231!GO:0042254;ribosome biogenesis and assembly;0.0282442554632438!GO:0016079;synaptic vesicle exocytosis;0.0286824848051974!GO:0042026;protein refolding;0.0289677425424032!GO:0051252;regulation of RNA metabolic process;0.0292307689622611!GO:0005868;cytoplasmic dynein complex;0.0292650530192331!GO:0009117;nucleotide metabolic process;0.0292650530192331!GO:0031371;ubiquitin conjugating enzyme complex;0.0302626553689238!GO:0030119;AP-type membrane coat adaptor complex;0.0303807385347618!GO:0000314;organellar small ribosomal subunit;0.0313326128789251!GO:0005763;mitochondrial small ribosomal subunit;0.0313326128789251!GO:0005667;transcription factor complex;0.0314547995933058!GO:0051540;metal cluster binding;0.0326401115940784!GO:0051536;iron-sulfur cluster binding;0.0326401115940784!GO:0031267;small GTPase binding;0.032707487959071!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0330945039040138!GO:0043681;protein import into mitochondrion;0.0332533209161137!GO:0007034;vacuolar transport;0.0334207570752157!GO:0032535;regulation of cellular component size;0.0337931495113481!GO:0046839;phospholipid dephosphorylation;0.0343609532347085!GO:0016859;cis-trans isomerase activity;0.0347417554520697!GO:0001578;microtubule bundle formation;0.0352643550951904!GO:0042995;cell projection;0.0353391753842214!GO:0030911;TPR domain binding;0.0357158590556751!GO:0004423;iduronate-2-sulfatase activity;0.0357158590556751!GO:0035023;regulation of Rho protein signal transduction;0.0359645657808238!GO:0043403;skeletal muscle regeneration;0.0368525644008759!GO:0006376;mRNA splice site selection;0.0368525644008759!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0368525644008759!GO:0030832;regulation of actin filament length;0.0369734410263755!GO:0006818;hydrogen transport;0.0376587818278321!GO:0000287;magnesium ion binding;0.0382541719841623!GO:0016585;chromatin remodeling complex;0.0384961131140995!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0386356898893325!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0396387306382539!GO:0007268;synaptic transmission;0.0401822538801353!GO:0032318;regulation of Ras GTPase activity;0.0406078011416711!GO:0000209;protein polyubiquitination;0.0407356753975574!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0409202711363896!GO:0050770;regulation of axonogenesis;0.0409841770294187!GO:0019911;structural constituent of myelin sheath;0.0412763488796652!GO:0019783;small conjugating protein-specific protease activity;0.0412763488796652!GO:0030131;clathrin adaptor complex;0.042989608457158!GO:0008250;oligosaccharyl transferase complex;0.0439563717188646!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0439588719990815!GO:0045047;protein targeting to ER;0.0439588719990815!GO:0051287;NAD binding;0.0439588719990815!GO:0016579;protein deubiquitination;0.0443907937178362!GO:0008180;signalosome;0.0443907937178362!GO:0001558;regulation of cell growth;0.0443907937178362!GO:0031124;mRNA 3'-end processing;0.0445876447395418!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0457698038366555!GO:0030641;cellular hydrogen ion homeostasis;0.0457862019247628!GO:0003725;double-stranded RNA binding;0.046501477471761!GO:0004971;alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity;0.0468198211795203!GO:0043407;negative regulation of MAP kinase activity;0.0472827221316901!GO:0004683;calmodulin-dependent protein kinase activity;0.0474386629858168!GO:0051539;4 iron, 4 sulfur cluster binding;0.0474843079796051!GO:0050749;apolipoprotein E receptor binding;0.0474870235599975!GO:0046474;glycerophospholipid biosynthetic process;0.0475700157146499!GO:0007409;axonogenesis;0.0482650732160677!GO:0015992;proton transport;0.048380648029694!GO:0004843;ubiquitin-specific protease activity;0.0488456578861277
|sample_id=10151
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=amygdala
|top_motifs=DBP:3.91930354962;REST:3.59768582994;RREB1:3.4848859783;PRRX1,2:3.4572065615;CUX2:3.43677683225;EGR1..3:3.42400897964;MYFfamily:3.38199135299;ZFP161:3.3123794287;OCT4_SOX2{dimer}:3.27390598195;NHLH1,2:3.22019255777;HBP1_HMGB_SSRP1_UBTF:3.18909787216;ATF2:3.17708257018;PRDM1:3.08388675028;AHR_ARNT_ARNT2:3.07230498478;RFX2..5_RFXANK_RFXAP:3.01246590696;HOXA9_MEIS1:3.00464807361;MED-1{core}:3.00368604819;RFX1:2.94652700365;ZBTB6:2.93499329675;GATA4:2.91574888158;MTE{core}:2.91250337947;POU5F1:2.90529140795;MZF1:2.86974146424;PATZ1:2.75262927299;TFAP2B:2.74990230547;SOX2:2.74303569654;GTF2I:2.74291704887;POU6F1:2.51824420666;MTF1:2.47631097599;FOXP1:2.44235234778;NKX6-1,2:2.31598166905;PAX5:2.28786918687;SOX5:2.24976815829;PAX6:2.22282604578;PAX4:2.2084386514;NKX3-2:2.18722931696;MAZ:2.18290449182;IKZF2:2.16495006905;ZNF384:2.14403675941;FOXM1:2.1354809774;HIC1:2.08744038589;BREu{core}:2.06344617205;TGIF1:2.00588710265;NANOG:1.9918037075;FOXD3:1.97155487329;SOX{8,9,10}:1.96997912548;CDC5L:1.91392991619;HOX{A4,D4}:1.90630891038;FOX{F1,F2,J1}:1.85839851837;HMGA1,2:1.75697748536;BPTF:1.74293190859;ARID5B:1.72926765417;KLF4:1.68755683405;SMAD1..7,9:1.68045380847;RBPJ:1.6656886499;LMO2:1.63000056941;GFI1B:1.61766512866;NRF1:1.57330358395;MAFB:1.50944415761;TEF:1.507323359;POU3F1..4:1.45281632609;NFIX:1.45025099191;EP300:1.42889010071;NFIL3:1.39855281873;TLX2:1.39156006099;SP1:1.3660862721;ADNP_IRX_SIX_ZHX:1.31613582969;GCM1,2:1.31408198212;SOX17:1.27491285364;ZBTB16:1.24602045548;POU1F1:1.2385332664;NKX2-3_NKX2-5:1.12900525119;HAND1,2:1.08954995237;GTF2A1,2:1.07086522655;TFDP1:1.07041751885;TOPORS:1.06502292061;FOX{I1,J2}:1.04655875418;ONECUT1,2:1.04053168543;T:1.03986253229;AR:1.02608333174;MYOD1:1.01487216315;FOXP3:0.991043163017;ZNF143:0.972093154107;EBF1:0.947007323223;LEF1_TCF7_TCF7L1,2:0.921716667229;ZIC1..3:0.882019164033;ZNF423:0.827239066693;JUN:0.826896743608;GFI1:0.779619110334;AIRE:0.742492235541;HMX1:0.722267795228;FOXL1:0.683135060717;TFAP2{A,C}:0.660307945551;NR3C1:0.645271329078;SPZ1:0.639789631157;XBP1:0.639067552047;VSX1,2:0.637701743396;TLX1..3_NFIC{dimer}:0.631995934065;CRX:0.619920864927;STAT1,3:0.581866960231;HSF1,2:0.550876969462;SREBF1,2:0.540269930847;MYBL2:0.529967910948;MEF2{A,B,C,D}:0.513805164146;CREB1:0.502462529197;FOX{D1,D2}:0.500998430861;STAT2,4,6:0.458204657593;FOXO1,3,4:0.458163937446;ZEB1:0.422406383371;XCPE1{core}:0.384423360766;FOXQ1:0.375113071455;HOX{A6,A7,B6,B7}:0.352197867918;ALX1:0.326292460053;IRF7:0.291127106548;GZF1:0.233631832337;RORA:0.219872375916;LHX3,4:0.206421823439;ZNF238:0.192304700536;PDX1:0.140484843026;ATF5_CREB3:0.108895164348;UFEwm:0.103853743014;YY1:0.0872498396368;FOXN1:0.069117028427;IKZF1:0.0403042550571;IRF1,2:-0.0337757701907;FOXA2:-0.0474215328467;PITX1..3:-0.0560380017295;PBX1:-0.0856856895679;NFY{A,B,C}:-0.115355409314;CDX1,2,4:-0.131998091327;DMAP1_NCOR{1,2}_SMARC:-0.140442962239;PAX2:-0.193938379809;ESRRA:-0.200207204174;PAX1,9:-0.216229778436;NANOG{mouse}:-0.241974539936;PAX3,7:-0.272451350624;NFATC1..3:-0.284374561861;ATF4:-0.353033513434;SPI1:-0.388961262054;NFE2L2:-0.406451872769;SNAI1..3:-0.493164555755;CEBPA,B_DDIT3:-0.523047013299;SPIB:-0.548085519441;NKX3-1:-0.565065336283;NKX2-2,8:-0.567013104078;bHLH_family:-0.634744631823;TBX4,5:-0.657489355947;NFE2:-0.684736891574;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.709672622843;TFCP2:-0.750068319899;GATA6:-0.798988472032;ETS1,2:-0.805124433278;HIF1A:-0.840483926703;TFAP4:-0.848647546988;EVI1:-0.945732860756;TP53:-0.952532396772;ATF6:-0.976542306667;TEAD1:-1.00999330559;HNF1A:-1.01518822787;TAL1_TCF{3,4,12}:-1.0181653304;ZNF148:-1.03142791431;HNF4A_NR2F1,2:-1.06611552303;BACH2:-1.07292131193;RUNX1..3:-1.12687303552;GLI1..3:-1.13752499946;FOSL2:-1.18662887974;FOS_FOS{B,L1}_JUN{B,D}:-1.18913685252;PAX8:-1.22622664872;NFKB1_REL_RELA:-1.3162356343;ELK1,4_GABP{A,B1}:-1.33224148911;E2F1..5:-1.35383203332;TBP:-1.38552064382;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.39379824296;NR5A1,2:-1.40929713875;NFE2L1:-1.41553753769;ELF1,2,4:-1.50248565982;HLF:-1.5393525299;ALX4:-1.53973494081;NR1H4:-1.5671765415;POU2F1..3:-1.59462549411;MYB:-1.62872516719;RXR{A,B,G}:-1.66121337543;ESR1:-1.67051180683;SRF:-1.82964430961;NKX2-1,4:-1.84321943459;RXRA_VDR{dimer}:-1.86283600022;STAT5{A,B}:-2.29224773378;HOX{A5,B5}:-2.50440769862;NR6A1:-2.50540453055;HES1:-2.66257486743;PPARG:-2.82769170361;EN1,2:-3.04991463947
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10151-102I7;search_select_hide=table117:FF:10151-102I7
}}
}}

Latest revision as of 12:22, 3 June 2020

Name:amygdala, adult, donor10252
Species:Human (Homo sapiens)
Library ID:CNhs12311
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueamygdala
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005342
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12311 CAGE DRX008618 DRR009490
Accession ID Hg19

Library idBAMCTSS
CNhs12311 DRZ000915 DRZ002300
Accession ID Hg38

Library idBAMCTSS
CNhs12311 DRZ012265 DRZ013650
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10024downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.406
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.857
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.308
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.0572
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.194
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.493
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0686
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.153
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0572
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.153
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.266
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.153
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0572
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.243
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.818
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.108
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.108
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.153
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0762
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0572
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.746
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.265
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.194
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.108
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.0572
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.493
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0377
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.355
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0877
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0702
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.565
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0572
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.597
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.452
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.545
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0572
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.562
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.762
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0572
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.153
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.327
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.108
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.627
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.612
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.173
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.452
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.106
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.53
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0572
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12311

Jaspar motifP-value
MA0002.20.0143
MA0003.10.226
MA0004.10.372
MA0006.10.279
MA0007.10.335
MA0009.10.0958
MA0014.10.658
MA0017.10.00116
MA0018.20.538
MA0019.10.589
MA0024.10.99
MA0025.10.826
MA0027.10.404
MA0028.10.0663
MA0029.10.0276
MA0030.10.631
MA0031.10.824
MA0035.20.00405
MA0038.10.385
MA0039.20.189
MA0040.10.677
MA0041.10.446
MA0042.10.919
MA0043.10.974
MA0046.10.00182
MA0047.20.0371
MA0048.10.188
MA0050.10.0613
MA0051.10.163
MA0052.10.906
MA0055.10.00313
MA0057.10.815
MA0058.10.295
MA0059.10.068
MA0060.10.698
MA0061.10.00825
MA0062.20.00351
MA0065.22.42865e-4
MA0066.10.00912
MA0067.10.934
MA0068.10.669
MA0069.10.396
MA0070.10.786
MA0071.10.0148
MA0072.10.261
MA0073.10.407
MA0074.10.211
MA0076.10.12
MA0077.10.198
MA0078.10.749
MA0079.20.612
MA0080.23.23671e-8
MA0081.10.04
MA0083.10.0183
MA0084.10.873
MA0087.10.744
MA0088.10.193
MA0090.10.371
MA0091.10.598
MA0092.10.274
MA0093.10.375
MA0099.23.22385e-18
MA0100.10.556
MA0101.10.0043
MA0102.20.203
MA0103.10.175
MA0104.20.434
MA0105.18.58906e-4
MA0106.10.0243
MA0107.10.00552
MA0108.20.327
MA0111.10.483
MA0112.26.33143e-4
MA0113.10.49
MA0114.10.00187
MA0115.10.316
MA0116.10.00696
MA0117.10.844
MA0119.10.114
MA0122.10.618
MA0124.10.672
MA0125.10.225
MA0131.10.992
MA0135.10.0506
MA0136.11.26195e-11
MA0137.20.656
MA0138.20.519
MA0139.10.368
MA0140.14.90543e-4
MA0141.10.00186
MA0142.10.994
MA0143.10.547
MA0144.10.301
MA0145.10.166
MA0146.10.0169
MA0147.10.301
MA0148.10.0357
MA0149.10.0193
MA0150.11.88282e-4
MA0152.10.51
MA0153.10.0796
MA0154.10.0401
MA0155.10.553
MA0156.11.04266e-7
MA0157.10.486
MA0159.10.00421
MA0160.10.00742
MA0162.10.102
MA0163.19.13749e-6
MA0164.10.708
MA0258.10.00847
MA0259.10.75



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12311

Novel motifP-value
10.048
100.049
1000.374
1010.378
1020.9
1030.0703
1040.151
1050.207
1060.0436
1070.111
1080.993
1090.00174
110.013
1100.0577
1110.16
1120.275
1130.571
1140.106
1150.966
1160.205
1170.0122
1180.147
1190.164
120.633
1200.204
1210.194
1220.834
1230.747
1240.334
1250.242
1260.0335
1270.435
1280.187
1290.386
130.00218
1300.307
1310.0492
1320.648
1330.0678
1340.407
1350.325
1360.00345
1370.774
1380.908
1390.101
140.925
1400.837
1410.437
1420.794
1430.0375
1440.898
1450.172
1460.495
1470.94
1480.23
1490.201
150.0707
1500.16
1510.577
1520.0874
1530.99
1540.489
1550.582
1560.313
1570.459
1580.513
1590.0389
160.0496
1600.223
1610.159
1620.793
1630.796
1640.0425
1650.035
1660.81
1670.663
1680.398
1690.00987
170.125
180.112
190.201
20.8
200.202
210.0781
220.202
230.351
240.0392
250.49
267.77333e-4
270.673
280.684
290.00827
30.0482
300.936
310.806
320.0348
330.0517
340.654
350.58
360.131
370.0339
380.302
390.273
40.636
400.0252
410.263
420.215
430.119
440.155
450.651
460.078
470.0549
480.0462
490.201
50.483
500.371
510.384
520.511
530.803
540.386
550.566
560.468
570.374
580.283
590.0668
60.957
600.0653
610.0906
620.168
630.2
640.187
650.227
660.127
670.276
680.127
690.479
70.0527
700.0463
710.0101
720.347
730.0295
740.685
750.0315
760.42
770.166
780.00163
790.26
80.0762
800.383
810.638
820.588
830.0321
840.68
850.256
860.2
872.35461e-4
880.825
890.361
90.362
900.0733
910.698
920.583
930.883
940.192
950.0105
960.972
970.757
980.257
990.475



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12311


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0001876 (amygdala)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
0000349 (limbic system)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010151 (human amygdala - adult donor sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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