FF:10151-102I7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005342 | ||
|HumanCAGEScanFiles=NCig10024;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008618;DRR009490;DRZ000915;DRZ002300;DRZ012265;DRZ013650 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0001876,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950,UBERON:0000349,UBERON:0010011,UBERON:0000454 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010151 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.54!344.78!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.41!254.33!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.15!140.81!SOX10;;chr3:181429704..181429722,+!p1@SOX2!2.11!129.28!SOX2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.10!124.07!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!1.84!68.79!OLIG2;;chr14:29235961..29236008,+!p1@FOXG1!1.82!65.55!FOXG1;;chr19:46801639..46801699,+!p1@HIF3A!1.77!57.25!HIF3A;;chr11:61520075..61520136,+!p1@C11orf9!1.75!112.68!C11orf9;;chr17:53342311..53342400,+!p1@HLF!1.74!61.05!HLF;;chr4:57547454..57547469,-!p1@HOPX!1.74!53.60!HOPX;;chr9:114287433..114287513,+!p1@ZNF483!1.71!126.32!ZNF483;;chr12:54779511..54779577,-!p5@ZNF385A!1.71!50.36!ZNF385A;;chr15:80733570..80733659,+!p2@ARNT2!1.71!49.80!ARNT2;;chr17:37764128..37764258,-!p1@NEUROD2!1.71!49.80!NEUROD2;;chr12:26277817..26277863,-!p2@BHLHE41!1.70!66.26!BHLHE41;;chr4:81118647..81118666,+!p1@PRDM8!1.70!64.43!PRDM8;;chr2:95963052..95963106,+!p1@KCNIP3!1.68!47.41!KCNIP3;;chr21:34442540..34442560,+!p2@OLIG1!1.67!45.44!OLIG1;;chr12:106976678..106976708,+!p2@RFX4!1.66!44.45!RFX4;;chr2:145277882..145277967,-!p3@ZEB2!1.65!73.15!ZEB2;;chr16:1031762..1031781,+!p1@SOX8!1.64!42.90!SOX8;;chr9:77112244..77112262,+!p1@RORB!1.62!45.72!RORB;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.62!40.65!POU3F3;;chr3:181429741..181429767,+!p2@SOX2!1.61!39.67!SOX2;;chr2:162272785..162272836,+!p1@TBR1!1.60!39.11!TBR1;;chr19:46800289..46800327,+!p2@HIF3A!1.57!36.57!HIF3A;;chr15:80696703..80696754,+!p1@ARNT2!1.56!46.14!ARNT2;;chr9:126774018..126774055,+!p1@LHX2!1.56!35.45!LHX2;;chr10:64134120..64134183,+!p1@ZNF365!1.54!40.09!ZNF365;;chr14:33403881..33403924,+!p1@NPAS3!1.53!32.78!NPAS3;;chr2:2334997..2335053,-!p1@MYT1L!1.52!32.07!MYT1L;;chrX:25034067..25034088,-!p1@ARX!1.52!32.07!ARX;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.52!31.79!SMARCE1;;chr6:19837592..19837621,+!p1@ID4!1.50!179.92!ID4;;chr12:26277956..26277980,-!p1@BHLHE41!1.50!105.36!BHLHE41;;chr8:53322304..53322340,-!p1@ST18!1.49!30.10!ST18;;chr11:113930425..113930471,+!p1@ZBTB16!1.48!41.78!ZBTB16;;chr10:119302232..119302265,+!p1@EMX2!1.48!29.40!EMX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.46!28.13!NKX6-2;;chr2:166326200..166326216,+!p1@CSRNP3!1.45!39.39!CSRNP3;;chr14:29236269..29236285,+!p3@FOXG1!1.45!27.29!FOXG1;;chr16:85932760..85932775,+!p1@IRF8!1.45!27.15!IRF8;;chr11:31832862..31832884,-!p2@PAX6!1.42!25.60!PAX6;;chr1:2461692..2461710,-!p1@HES5!1.42!25.04!HES5;;chr8:65492915..65492932,+!p1@BHLHE22!1.41!24.90!BHLHE22;;chr10:48355030..48355090,+!p1@ZNF488!1.39!29.96!ZNF488;;chr11:8102846..8102892,+!p1@TUB!1.38!32.07!TUB;;chr11:47400078..47400106,-!p1@SPI1!1.38!23.21!SPI1;;chr12:106976774..106976788,+!p1@RFX4!1.38!22.93!RFX4;;chr1:61548069..61548102,+!p3@NFIA!1.37!53.31!NFIA;;chr17:7492684..7492778,-!p2@SOX15!1.37!46.84!SOX15;;chr17:38219209..38219230,+!p1@THRA!1.36!272.48!THRA;;chr17:70117153..70117174,+!p1@SOX9!1.36!219.73!SOX9;;chr15:80735246..80735321,+!p3@ARNT2!1.36!21.80!ARNT2;;chr22:41763452..41763466,+!p2@TEF!1.35!21.24!TEF;;chr14:29234581..29234601,+!p2@FOXG1!1.34!21.10!FOXG1;;chr6:143266185..143266238,-!p2@HIVEP2!1.32!27.15!HIVEP2;;chr3:126076242..126076257,-!p1@KLF15!1.32!24.76!KLF15;;chr5:92920256..92920282,+!p7@NR2F1!1.29!22.37!NR2F1;;chr5:88178983..88179012,-!p1@MEF2C!1.28!137.72!MEF2C;;chr8:53322347..53322378,-!p2@ST18!1.27!17.72!ST18;;chr14:33403648..33403710,+!p3@NPAS3!1.27!17.72!NPAS3;;chr6:126112039..126112062,+!p8@NCOA7!1.26!20.54!NCOA7;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.23!16.18!ZBED1;;chr12:24102576..24102623,-!p2@SOX5!1.23!15.90!SOX5;;chr1:214161272..214161322,+!p1@PROX1!1.22!21.80!PROX1;;chr1:244219775..244219893,+!p2@ZNF238!1.21!20.96!ZNF238;;chr8:30890810..30890880,-!p1@PURG!1.21!15.33!PURG;;chr8:40755333..40755352,-!p1@ZMAT4!1.21!15.33!ZMAT4;;chrX:85969626..85969664,+!p1@DACH2!1.20!14.77!DACH2;;chr11:31832658..31832681,-!p1@PAX6!1.19!14.63!PAX6;;chr16:79634624..79634642,-!p1@MAF!1.18!55.71!MAF;;chr16:51185318..51185348,-!p2@SALL1!1.18!14.21!SALL1;;chr9:126773880..126773895,+!p2@LHX2!1.18!14.21!LHX2;;chr14:58798013..58798071,+!p2@ARID4A!1.18!14.21!ARID4A;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.93!POU3F3;;chr4:57522166..57522260,-!p2@HOPX!1.15!15.19!HOPX;;chr9:3525867..3525902,-!p3@RFX3!1.13!42.76!RFX3;;chr19:13135386..13135435,+!p4@NFIX!1.13!12.52!NFIX;;chr11:113930291..113930339,+!p2@ZBTB16!1.12!19.83!ZBTB16;;chr9:126774058..126774081,+!p3@LHX2!1.12!12.24!LHX2;;chr19:57352109..57352153,-!p2@ZIM2!1.12!12.10!ZIM2;;chr7:63505799..63505904,+!p1@ZNF727!1.11!11.96!ZNF727;;chr2:42721205..42721307,+!p4@MTA3!1.11!11.82!MTA3;;chr2:95963120..95963136,+!p2@KCNIP3!1.10!11.68!KCNIP3;;chr14:22005197..22005261,-!p3@SALL2!1.10!11.53!SALL2;;chr6:108487289..108487302,+!p1@NR2E1!1.10!11.53!NR2E1;;chr12:26277929..26277955,-!p3@BHLHE41!1.09!16.32!BHLHE41;;chr2:60781201..60781258,-!p3@BCL11A!1.09!11.39!BCL11A;;chr15:31658288..31658338,+!p4@KLF13!1.09!11.39!KLF13;;chr19:13135582..13135600,+!p3@NFIX!1.09!11.25!NFIX;;chr2:2328299..2328363,-!p3@MYT1L!1.09!11.25!MYT1L;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.25!PKNOX2;;chr19:38085768..38085821,+!p1@ZNF540!1.08!16.46!ZNF540;;chr21:39870339..39870443,-!p1@ERG!1.08!10.97!ERG;;chr12:103351444..103351461,+!p1@ASCL1!1.07!10.83!ASCL1;;chr2:182545234..182545252,-!p1@NEUROD1!1.07!10.83!NEUROD1;;chr17:38219184..38219195,+!p3@THRA!1.06!20.96!THRA;;chr3:24536253..24536328,-!p1@THRB!1.06!20.12!THRB;;chr14:33408072..33408114,+!p2@NPAS3!1.06!12.38!NPAS3;;chr8:106330656..106330684,+!p1@ZFPM2!1.05!26.87!ZFPM2;;chr16:79634595..79634620,-!p2@MAF!1.05!18.99!MAF;;chr5:71803177..71803255,-!p1@ZNF366!1.05!10.27!ZNF366;;chr7:31380292..31380351,-!p1@NEUROD6!1.05!10.13!NEUROD6;;chr18:52989031..52989079,-!p2@TCF4!1.04!23.63!TCF4;;chr12:24715376..24715432,-!p1@SOX5!1.04!12.80!SOX5;;chr11:113930401..113930422,+!p3@ZBTB16!1.04!9.85!ZBTB16;;chr11:31832807..31832823,-!p4@PAX6!1.04!9.85!PAX6;;chr21:34442584..34442587,+!p3@OLIG1!1.04!9.85!OLIG1;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.50!KLF15;;chr1:151032860..151032918,+!p1@MLLT11!1.02!115.07!MLLT11;;chr7:150974206..150974255,-!p1@SMARCD3!1.02!60.63!SMARCD3;;chr3:114819124..114819200,-!p3@ZBTB20!1.02!22.37!ZBTB20;;chr1:167298300..167298319,+!p2@POU2F1!1.02!9.57!POU2F1;;chr7:115670804..115670825,-!p1@TFEC!1.02!9.42!TFEC;;chr16:67197776..67197831,+!p4@HSF4!1.02!9.42!HSF4;;chr12:54785074..54785122,-!p2@ZNF385A!1.01!14.35!ZNF385A;;chr12:125003087..125003141,-!p4@NCOR2!1.01!11.96!NCOR2;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.25!ZBTB38;;chr15:80696666..80696700,+!p4@ARNT2!1.01!9.28!ARNT2;;chr17:38219143..38219154,+!p2@THRA!1.00!32.64!THRA;;chr9:3525910..3525955,-!p4@RFX3!1.00!27.71!RFX3;;chr1:61924375..61924380,+!p6@NFIA!1.00!12.66!NFIA;;chr19:57183114..57183145,-!p1@ZNF835!1.00!10.13!ZNF835;;chr1:40105299..40105326,-!p1@HEYL!1.00!9.00!HEYL;;chr3:187463179..187463201,-!p2@BCL6!0.99!36.71!BCL6;;chr3:114173720..114173794,-!p6@ZBTB20!0.99!8.86!ZBTB20;;chr12:106976656..106976672,+!p4@RFX4!0.99!8.86!RFX4;;chr1:8585945..8586056,-!p3@RERE!0.98!29.54!RERE;;chr8:106330696..106330719,+!p2@ZFPM2!0.98!10.97!ZFPM2;;chr6:126070769..126070801,+!p1@HEY2!0.98!9.99!HEY2;;chr7:73038839..73038862,-!p1@MLXIPL!0.98!8.58!MLXIPL;;chr8:93074803..93074845,-!p1@RUNX1T1!0.98!8.58!RUNX1T1;;chr16:67198633..67198671,+!p1@HSF4!0.98!8.58!HSF4;;chr2:63277948..63277974,+!p1@OTX1!0.98!8.58!OTX1;;chr2:68592406..68592424,+!p1@PLEK!0.98!8.58!PLEK;;chr5:178368186..178368238,+!p1@ZNF454!0.97!15.19!ZNF454;;chr9:14314946..14314983,-!p8@NFIB!0.97!8.44!NFIB;;chr14:29234870..29234930,+!p7@FOXG1!0.97!8.44!FOXG1;;chr12:103352277..103352324,+!p2@ASCL1!0.97!8.30!ASCL1;;chr3:181429641..181429650,+!p3@SOX2!0.97!8.30!SOX2;;chr5:88081308..88081333,-!p8@MEF2C!0.97!8.30!MEF2C;;chr8:10588010..10588030,-!p1@SOX7!0.97!8.30!SOX7;;chr18:53070846..53070902,-!p6@TCF4!0.97!8.30!TCF4;;chr19:30863271..30863338,+!p1@ZNF536!0.97!8.30!ZNF536;;chr16:51185172..51185197,-!p1@SALL1!0.96!8.16!SALL1;;chr16:67197654..67197716,+!p3@HSF4!0.96!8.16!HSF4;;chr13:100623375..100623425,-!p1@ZIC5!0.96!8.16!ZIC5;;chr9:3525727..3525828,-!p2@RFX3!0.95!20.96!RFX3;;chr7:64023410..64023428,-!p2@ZNF680!0.95!12.80!ZNF680;;chr10:38265517..38265591,-!p1@ZNF25!0.94!30.81!ZNF25;;chr14:73360799..73360817,-!p1@DPF3!0.94!27.85!DPF3;;chr11:31839488..31839515,-!p3@PAX6!0.94!7.74!PAX6;;chr13:95364784..95364806,-!p1@SOX21!0.94!7.74!SOX21;;chr17:17726907..17726958,-!p2@SREBF1!0.93!48.81!SREBF1;;chr20:3388541..3388575,-!p2@C20orf194!0.93!30.38!C20orf194;;chr19:53636125..53636178,-!p1@ZNF415!0.93!21.94!ZNF415;;chr2:2335109..2335134,-!p2@MYT1L!0.93!7.60!MYT1L;;chr8:65493017..65493035,+!p4@BHLHE22!0.93!7.46!BHLHE22;;chr14:21994337..21994442,-!p1@SALL2!0.92!21.10!SALL2;;chr2:113057415..113057477,+!p3@ZC3H6!0.92!9.57!ZC3H6;;chr2:73520667..73520683,-!p1@EGR4!0.92!7.31!EGR4;;chr15:31618903..31618962,+!p3@KLF13!0.91!20.40!KLF13;;chr8:80679993..80680011,-!p1@HEY1!0.91!10.41!HEY1;;chr15:80696836..80696853,+!p7@ARNT2!0.91!7.17!ARNT2;;chr16:67198683..67198698,+!p2@HSF4!0.91!7.17!HSF4;;chr9:77112225..77112238,+!p2@RORB!0.91!7.17!RORB;;chr17:38256822..38256851,-!p1@NR1D1!0.90!57.67!NR1D1;;chr5:88179017..88179046,-!p2@MEF2C!0.90!28.84!MEF2C;;chr15:57511609..57511651,+!p2@TCF12!0.90!11.96!TCF12;;chr19:57019215..57019250,+!p1@ZNF471!0.90!10.69!ZNF471;;chr19:58545454..58545498,+!p1@ZSCAN1!0.90!7.03!ZSCAN1;;chr1:2985760..2985774,+!p1@PRDM16!0.90!7.03!PRDM16;;chr8:22550530..22550609,-!p2@EGR3!0.90!7.03!EGR3;;chr13:100634031..100634045,+!p1@ZIC2!0.90!7.03!ZIC2;;chrX:82763292..82763317,+!p1@POU3F4!0.90!7.03!POU3F4;;chr1:244214577..244214593,+!p1@ZNF238!0.90!6.89!ZNF238;;chr17:4890919..4890985,-!p1@CAMTA2!0.89!67.24!CAMTA2;;chr13:45151434..45151507,-!p3@TSC22D1!0.89!39.25!TSC22D1;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.65!NR2F1;;chr1:61547894..61547968,+!p2@NFIA!0.89!20.40!NFIA;;chrX:70315688..70315709,+!p1@FOXO4!0.89!16.32!FOXO4;;chr7:6655225..6655279,+!p1@ENST00000457543!0.89!10.41!ZNF853;;chr20:50159198..50159299,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| |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.54!344.78!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.41!254.33!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.15!140.81!SOX10;;chr3:181429704..181429722,+!p1@SOX2!2.11!129.28!SOX2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.10!124.07!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!1.84!68.79!OLIG2;;chr14:29235961..29236008,+!p1@FOXG1!1.82!65.55!FOXG1;;chr19:46801639..46801699,+!p1@HIF3A!1.77!57.25!HIF3A;;chr11:61520075..61520136,+!p1@C11orf9!1.75!112.68!C11orf9;;chr17:53342311..53342400,+!p1@HLF!1.74!61.05!HLF;;chr4:57547454..57547469,-!p1@HOPX!1.74!53.60!HOPX;;chr9:114287433..114287513,+!p1@ZNF483!1.71!126.32!ZNF483;;chr12:54779511..54779577,-!p5@ZNF385A!1.71!50.36!ZNF385A;;chr15:80733570..80733659,+!p2@ARNT2!1.71!49.80!ARNT2;;chr17:37764128..37764258,-!p1@NEUROD2!1.71!49.80!NEUROD2;;chr12:26277817..26277863,-!p2@BHLHE41!1.70!66.26!BHLHE41;;chr4:81118647..81118666,+!p1@PRDM8!1.70!64.43!PRDM8;;chr2:95963052..95963106,+!p1@KCNIP3!1.68!47.41!KCNIP3;;chr21:34442540..34442560,+!p2@OLIG1!1.67!45.44!OLIG1;;chr12:106976678..106976708,+!p2@RFX4!1.66!44.45!RFX4;;chr2:145277882..145277967,-!p3@ZEB2!1.65!73.15!ZEB2;;chr16:1031762..1031781,+!p1@SOX8!1.64!42.90!SOX8;;chr9:77112244..77112262,+!p1@RORB!1.62!45.72!RORB;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.62!40.65!POU3F3;;chr3:181429741..181429767,+!p2@SOX2!1.61!39.67!SOX2;;chr2:162272785..162272836,+!p1@TBR1!1.60!39.11!TBR1;;chr19:46800289..46800327,+!p2@HIF3A!1.57!36.57!HIF3A;;chr15:80696703..80696754,+!p1@ARNT2!1.56!46.14!ARNT2;;chr9:126774018..126774055,+!p1@LHX2!1.56!35.45!LHX2;;chr10:64134120..64134183,+!p1@ZNF365!1.54!40.09!ZNF365;;chr14:33403881..33403924,+!p1@NPAS3!1.53!32.78!NPAS3;;chr2:2334997..2335053,-!p1@MYT1L!1.52!32.07!MYT1L;;chrX:25034067..25034088,-!p1@ARX!1.52!32.07!ARX;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.52!31.79!SMARCE1;;chr6:19837592..19837621,+!p1@ID4!1.50!179.92!ID4;;chr12:26277956..26277980,-!p1@BHLHE41!1.50!105.36!BHLHE41;;chr8:53322304..53322340,-!p1@ST18!1.49!30.10!ST18;;chr11:113930425..113930471,+!p1@ZBTB16!1.48!41.78!ZBTB16;;chr10:119302232..119302265,+!p1@EMX2!1.48!29.40!EMX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.46!28.13!NKX6-2;;chr2:166326200..166326216,+!p1@CSRNP3!1.45!39.39!CSRNP3;;chr14:29236269..29236285,+!p3@FOXG1!1.45!27.29!FOXG1;;chr16:85932760..85932775,+!p1@IRF8!1.45!27.15!IRF8;;chr11:31832862..31832884,-!p2@PAX6!1.42!25.60!PAX6;;chr1:2461692..2461710,-!p1@HES5!1.42!25.04!HES5;;chr8:65492915..65492932,+!p1@BHLHE22!1.41!24.90!BHLHE22;;chr10:48355030..48355090,+!p1@ZNF488!1.39!29.96!ZNF488;;chr11:8102846..8102892,+!p1@TUB!1.38!32.07!TUB;;chr11:47400078..47400106,-!p1@SPI1!1.38!23.21!SPI1;;chr12:106976774..106976788,+!p1@RFX4!1.38!22.93!RFX4;;chr1:61548069..61548102,+!p3@NFIA!1.37!53.31!NFIA;;chr17:7492684..7492778,-!p2@SOX15!1.37!46.84!SOX15;;chr17:38219209..38219230,+!p1@THRA!1.36!272.48!THRA;;chr17:70117153..70117174,+!p1@SOX9!1.36!219.73!SOX9;;chr15:80735246..80735321,+!p3@ARNT2!1.36!21.80!ARNT2;;chr22:41763452..41763466,+!p2@TEF!1.35!21.24!TEF;;chr14:29234581..29234601,+!p2@FOXG1!1.34!21.10!FOXG1;;chr6:143266185..143266238,-!p2@HIVEP2!1.32!27.15!HIVEP2;;chr3:126076242..126076257,-!p1@KLF15!1.32!24.76!KLF15;;chr5:92920256..92920282,+!p7@NR2F1!1.29!22.37!NR2F1;;chr5:88178983..88179012,-!p1@MEF2C!1.28!137.72!MEF2C;;chr8:53322347..53322378,-!p2@ST18!1.27!17.72!ST18;;chr14:33403648..33403710,+!p3@NPAS3!1.27!17.72!NPAS3;;chr6:126112039..126112062,+!p8@NCOA7!1.26!20.54!NCOA7;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.23!16.18!ZBED1;;chr12:24102576..24102623,-!p2@SOX5!1.23!15.90!SOX5;;chr1:214161272..214161322,+!p1@PROX1!1.22!21.80!PROX1;;chr1:244219775..244219893,+!p2@ZNF238!1.21!20.96!ZNF238;;chr8:30890810..30890880,-!p1@PURG!1.21!15.33!PURG;;chr8:40755333..40755352,-!p1@ZMAT4!1.21!15.33!ZMAT4;;chrX:85969626..85969664,+!p1@DACH2!1.20!14.77!DACH2;;chr11:31832658..31832681,-!p1@PAX6!1.19!14.63!PAX6;;chr16:79634624..79634642,-!p1@MAF!1.18!55.71!MAF;;chr16:51185318..51185348,-!p2@SALL1!1.18!14.21!SALL1;;chr9:126773880..126773895,+!p2@LHX2!1.18!14.21!LHX2;;chr14:58798013..58798071,+!p2@ARID4A!1.18!14.21!ARID4A;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.93!POU3F3;;chr4:57522166..57522260,-!p2@HOPX!1.15!15.19!HOPX;;chr9:3525867..3525902,-!p3@RFX3!1.13!42.76!RFX3;;chr19:13135386..13135435,+!p4@NFIX!1.13!12.52!NFIX;;chr11:113930291..113930339,+!p2@ZBTB16!1.12!19.83!ZBTB16;;chr9:126774058..126774081,+!p3@LHX2!1.12!12.24!LHX2;;chr19:57352109..57352153,-!p2@ZIM2!1.12!12.10!ZIM2;;chr7:63505799..63505904,+!p1@ZNF727!1.11!11.96!ZNF727;;chr2:42721205..42721307,+!p4@MTA3!1.11!11.82!MTA3;;chr2:95963120..95963136,+!p2@KCNIP3!1.10!11.68!KCNIP3;;chr14:22005197..22005261,-!p3@SALL2!1.10!11.53!SALL2;;chr6:108487289..108487302,+!p1@NR2E1!1.10!11.53!NR2E1;;chr12:26277929..26277955,-!p3@BHLHE41!1.09!16.32!BHLHE41;;chr2:60781201..60781258,-!p3@BCL11A!1.09!11.39!BCL11A;;chr15:31658288..31658338,+!p4@KLF13!1.09!11.39!KLF13;;chr19:13135582..13135600,+!p3@NFIX!1.09!11.25!NFIX;;chr2:2328299..2328363,-!p3@MYT1L!1.09!11.25!MYT1L;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.25!PKNOX2;;chr19:38085768..38085821,+!p1@ZNF540!1.08!16.46!ZNF540;;chr21:39870339..39870443,-!p1@ERG!1.08!10.97!ERG;;chr12:103351444..103351461,+!p1@ASCL1!1.07!10.83!ASCL1;;chr2:182545234..182545252,-!p1@NEUROD1!1.07!10.83!NEUROD1;;chr17:38219184..38219195,+!p3@THRA!1.06!20.96!THRA;;chr3:24536253..24536328,-!p1@THRB!1.06!20.12!THRB;;chr14:33408072..33408114,+!p2@NPAS3!1.06!12.38!NPAS3;;chr8:106330656..106330684,+!p1@ZFPM2!1.05!26.87!ZFPM2;;chr16:79634595..79634620,-!p2@MAF!1.05!18.99!MAF;;chr5:71803177..71803255,-!p1@ZNF366!1.05!10.27!ZNF366;;chr7:31380292..31380351,-!p1@NEUROD6!1.05!10.13!NEUROD6;;chr18:52989031..52989079,-!p2@TCF4!1.04!23.63!TCF4;;chr12:24715376..24715432,-!p1@SOX5!1.04!12.80!SOX5;;chr11:113930401..113930422,+!p3@ZBTB16!1.04!9.85!ZBTB16;;chr11:31832807..31832823,-!p4@PAX6!1.04!9.85!PAX6;;chr21:34442584..34442587,+!p3@OLIG1!1.04!9.85!OLIG1;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.50!KLF15;;chr1:151032860..151032918,+!p1@MLLT11!1.02!115.07!MLLT11;;chr7:150974206..150974255,-!p1@SMARCD3!1.02!60.63!SMARCD3;;chr3:114819124..114819200,-!p3@ZBTB20!1.02!22.37!ZBTB20;;chr1:167298300..167298319,+!p2@POU2F1!1.02!9.57!POU2F1;;chr7:115670804..115670825,-!p1@TFEC!1.02!9.42!TFEC;;chr16:67197776..67197831,+!p4@HSF4!1.02!9.42!HSF4;;chr12:54785074..54785122,-!p2@ZNF385A!1.01!14.35!ZNF385A;;chr12:125003087..125003141,-!p4@NCOR2!1.01!11.96!NCOR2;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.25!ZBTB38;;chr15:80696666..80696700,+!p4@ARNT2!1.01!9.28!ARNT2;;chr17:38219143..38219154,+!p2@THRA!1.00!32.64!THRA;;chr9:3525910..3525955,-!p4@RFX3!1.00!27.71!RFX3;;chr1:61924375..61924380,+!p6@NFIA!1.00!12.66!NFIA;;chr19:57183114..57183145,-!p1@ZNF835!1.00!10.13!ZNF835;;chr1:40105299..40105326,-!p1@HEYL!1.00!9.00!HEYL;;chr3:187463179..187463201,-!p2@BCL6!0.99!36.71!BCL6;;chr3:114173720..114173794,-!p6@ZBTB20!0.99!8.86!ZBTB20;;chr12:106976656..106976672,+!p4@RFX4!0.99!8.86!RFX4;;chr1:8585945..8586056,-!p3@RERE!0.98!29.54!RERE;;chr8:106330696..106330719,+!p2@ZFPM2!0.98!10.97!ZFPM2;;chr6:126070769..126070801,+!p1@HEY2!0.98!9.99!HEY2;;chr7:73038839..73038862,-!p1@MLXIPL!0.98!8.58!MLXIPL;;chr8:93074803..93074845,-!p1@RUNX1T1!0.98!8.58!RUNX1T1;;chr16:67198633..67198671,+!p1@HSF4!0.98!8.58!HSF4;;chr2:63277948..63277974,+!p1@OTX1!0.98!8.58!OTX1;;chr2:68592406..68592424,+!p1@PLEK!0.98!8.58!PLEK;;chr5:178368186..178368238,+!p1@ZNF454!0.97!15.19!ZNF454;;chr9:14314946..14314983,-!p8@NFIB!0.97!8.44!NFIB;;chr14:29234870..29234930,+!p7@FOXG1!0.97!8.44!FOXG1;;chr12:103352277..103352324,+!p2@ASCL1!0.97!8.30!ASCL1;;chr3:181429641..181429650,+!p3@SOX2!0.97!8.30!SOX2;;chr5:88081308..88081333,-!p8@MEF2C!0.97!8.30!MEF2C;;chr8:10588010..10588030,-!p1@SOX7!0.97!8.30!SOX7;;chr18:53070846..53070902,-!p6@TCF4!0.97!8.30!TCF4;;chr19:30863271..30863338,+!p1@ZNF536!0.97!8.30!ZNF536;;chr16:51185172..51185197,-!p1@SALL1!0.96!8.16!SALL1;;chr16:67197654..67197716,+!p3@HSF4!0.96!8.16!HSF4;;chr13:100623375..100623425,-!p1@ZIC5!0.96!8.16!ZIC5;;chr9:3525727..3525828,-!p2@RFX3!0.95!20.96!RFX3;;chr7:64023410..64023428,-!p2@ZNF680!0.95!12.80!ZNF680;;chr10:38265517..38265591,-!p1@ZNF25!0.94!30.81!ZNF25;;chr14:73360799..73360817,-!p1@DPF3!0.94!27.85!DPF3;;chr11:31839488..31839515,-!p3@PAX6!0.94!7.74!PAX6;;chr13:95364784..95364806,-!p1@SOX21!0.94!7.74!SOX21;;chr17:17726907..17726958,-!p2@SREBF1!0.93!48.81!SREBF1;;chr20:3388541..3388575,-!p2@C20orf194!0.93!30.38!C20orf194;;chr19:53636125..53636178,-!p1@ZNF415!0.93!21.94!ZNF415;;chr2:2335109..2335134,-!p2@MYT1L!0.93!7.60!MYT1L;;chr8:65493017..65493035,+!p4@BHLHE22!0.93!7.46!BHLHE22;;chr14:21994337..21994442,-!p1@SALL2!0.92!21.10!SALL2;;chr2:113057415..113057477,+!p3@ZC3H6!0.92!9.57!ZC3H6;;chr2:73520667..73520683,-!p1@EGR4!0.92!7.31!EGR4;;chr15:31618903..31618962,+!p3@KLF13!0.91!20.40!KLF13;;chr8:80679993..80680011,-!p1@HEY1!0.91!10.41!HEY1;;chr15:80696836..80696853,+!p7@ARNT2!0.91!7.17!ARNT2;;chr16:67198683..67198698,+!p2@HSF4!0.91!7.17!HSF4;;chr9:77112225..77112238,+!p2@RORB!0.91!7.17!RORB;;chr17:38256822..38256851,-!p1@NR1D1!0.90!57.67!NR1D1;;chr5:88179017..88179046,-!p2@MEF2C!0.90!28.84!MEF2C;;chr15:57511609..57511651,+!p2@TCF12!0.90!11.96!TCF12;;chr19:57019215..57019250,+!p1@ZNF471!0.90!10.69!ZNF471;;chr19:58545454..58545498,+!p1@ZSCAN1!0.90!7.03!ZSCAN1;;chr1:2985760..2985774,+!p1@PRDM16!0.90!7.03!PRDM16;;chr8:22550530..22550609,-!p2@EGR3!0.90!7.03!EGR3;;chr13:100634031..100634045,+!p1@ZIC2!0.90!7.03!ZIC2;;chrX:82763292..82763317,+!p1@POU3F4!0.90!7.03!POU3F4;;chr1:244214577..244214593,+!p1@ZNF238!0.90!6.89!ZNF238;;chr17:4890919..4890985,-!p1@CAMTA2!0.89!67.24!CAMTA2;;chr13:45151434..45151507,-!p3@TSC22D1!0.89!39.25!TSC22D1;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.65!NR2F1;;chr1:61547894..61547968,+!p2@NFIA!0.89!20.40!NFIA;;chrX:70315688..70315709,+!p1@FOXO4!0.89!16.32!FOXO4;;chr7:6655225..6655279,+!p1@ENST00000457543!0.89!10.41!ZNF853;;chr20:50159198..50159299,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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001871;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10151-102I7 | |id=FF:10151-102I7 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0010151 | ||
|is_obsolete= | |||
|library_id=CNhs12311 | |||
|library_id_phase_based=2:CNhs12311 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10151 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10151 | |||
|name=amygdala, adult, donor10252 | |name=amygdala, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10024,,, | |profile_cagescan=NCig10024,,, | ||
|profile_hcage=CNhs12311,LSID913,release011,COMPLETED | |profile_hcage=CNhs12311,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=59.61975 | |rna_weight_ug=59.61975 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 101: | ||
|sample_tissue=amygdala | |sample_tissue=amygdala | ||
|top_motifs=DBP:3.91930354962;REST:3.59768582994;RREB1:3.4848859783;PRRX1,2:3.4572065615;CUX2:3.43677683225;EGR1..3:3.42400897964;MYFfamily:3.38199135299;ZFP161:3.3123794287;OCT4_SOX2{dimer}:3.27390598195;NHLH1,2:3.22019255777;HBP1_HMGB_SSRP1_UBTF:3.18909787216;ATF2:3.17708257018;PRDM1:3.08388675028;AHR_ARNT_ARNT2:3.07230498478;RFX2..5_RFXANK_RFXAP:3.01246590696;HOXA9_MEIS1:3.00464807361;MED-1{core}:3.00368604819;RFX1:2.94652700365;ZBTB6:2.93499329675;GATA4:2.91574888158;MTE{core}:2.91250337947;POU5F1:2.90529140795;MZF1:2.86974146424;PATZ1:2.75262927299;TFAP2B:2.74990230547;SOX2:2.74303569654;GTF2I:2.74291704887;POU6F1:2.51824420666;MTF1:2.47631097599;FOXP1:2.44235234778;NKX6-1,2:2.31598166905;PAX5:2.28786918687;SOX5:2.24976815829;PAX6:2.22282604578;PAX4:2.2084386514;NKX3-2:2.18722931696;MAZ:2.18290449182;IKZF2:2.16495006905;ZNF384:2.14403675941;FOXM1:2.1354809774;HIC1:2.08744038589;BREu{core}:2.06344617205;TGIF1:2.00588710265;NANOG:1.9918037075;FOXD3:1.97155487329;SOX{8,9,10}:1.96997912548;CDC5L:1.91392991619;HOX{A4,D4}:1.90630891038;FOX{F1,F2,J1}:1.85839851837;HMGA1,2:1.75697748536;BPTF:1.74293190859;ARID5B:1.72926765417;KLF4:1.68755683405;SMAD1..7,9:1.68045380847;RBPJ:1.6656886499;LMO2:1.63000056941;GFI1B:1.61766512866;NRF1:1.57330358395;MAFB:1.50944415761;TEF:1.507323359;POU3F1..4:1.45281632609;NFIX:1.45025099191;EP300:1.42889010071;NFIL3:1.39855281873;TLX2:1.39156006099;SP1:1.3660862721;ADNP_IRX_SIX_ZHX:1.31613582969;GCM1,2:1.31408198212;SOX17:1.27491285364;ZBTB16:1.24602045548;POU1F1:1.2385332664;NKX2-3_NKX2-5:1.12900525119;HAND1,2:1.08954995237;GTF2A1,2:1.07086522655;TFDP1:1.07041751885;TOPORS:1.06502292061;FOX{I1,J2}:1.04655875418;ONECUT1,2:1.04053168543;T:1.03986253229;AR:1.02608333174;MYOD1:1.01487216315;FOXP3:0.991043163017;ZNF143:0.972093154107;EBF1:0.947007323223;LEF1_TCF7_TCF7L1,2:0.921716667229;ZIC1..3:0.882019164033;ZNF423:0.827239066693;JUN:0.826896743608;GFI1:0.779619110334;AIRE:0.742492235541;HMX1:0.722267795228;FOXL1:0.683135060717;TFAP2{A,C}:0.660307945551;NR3C1:0.645271329078;SPZ1:0.639789631157;XBP1:0.639067552047;VSX1,2:0.637701743396;TLX1..3_NFIC{dimer}:0.631995934065;CRX:0.619920864927;STAT1,3:0.581866960231;HSF1,2:0.550876969462;SREBF1,2:0.540269930847;MYBL2:0.529967910948;MEF2{A,B,C,D}:0.513805164146;CREB1:0.502462529197;FOX{D1,D2}:0.500998430861;STAT2,4,6:0.458204657593;FOXO1,3,4:0.458163937446;ZEB1:0.422406383371;XCPE1{core}:0.384423360766;FOXQ1:0.375113071455;HOX{A6,A7,B6,B7}:0.352197867918;ALX1:0.326292460053;IRF7:0.291127106548;GZF1:0.233631832337;RORA:0.219872375916;LHX3,4:0.206421823439;ZNF238:0.192304700536;PDX1:0.140484843026;ATF5_CREB3:0.108895164348;UFEwm:0.103853743014;YY1:0.0872498396368;FOXN1:0.069117028427;IKZF1:0.0403042550571;IRF1,2:-0.0337757701907;FOXA2:-0.0474215328467;PITX1..3:-0.0560380017295;PBX1:-0.0856856895679;NFY{A,B,C}:-0.115355409314;CDX1,2,4:-0.131998091327;DMAP1_NCOR{1,2}_SMARC:-0.140442962239;PAX2:-0.193938379809;ESRRA:-0.200207204174;PAX1,9:-0.216229778436;NANOG{mouse}:-0.241974539936;PAX3,7:-0.272451350624;NFATC1..3:-0.284374561861;ATF4:-0.353033513434;SPI1:-0.388961262054;NFE2L2:-0.406451872769;SNAI1..3:-0.493164555755;CEBPA,B_DDIT3:-0.523047013299;SPIB:-0.548085519441;NKX3-1:-0.565065336283;NKX2-2,8:-0.567013104078;bHLH_family:-0.634744631823;TBX4,5:-0.657489355947;NFE2:-0.684736891574;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.709672622843;TFCP2:-0.750068319899;GATA6:-0.798988472032;ETS1,2:-0.805124433278;HIF1A:-0.840483926703;TFAP4:-0.848647546988;EVI1:-0.945732860756;TP53:-0.952532396772;ATF6:-0.976542306667;TEAD1:-1.00999330559;HNF1A:-1.01518822787;TAL1_TCF{3,4,12}:-1.0181653304;ZNF148:-1.03142791431;HNF4A_NR2F1,2:-1.06611552303;BACH2:-1.07292131193;RUNX1..3:-1.12687303552;GLI1..3:-1.13752499946;FOSL2:-1.18662887974;FOS_FOS{B,L1}_JUN{B,D}:-1.18913685252;PAX8:-1.22622664872;NFKB1_REL_RELA:-1.3162356343;ELK1,4_GABP{A,B1}:-1.33224148911;E2F1..5:-1.35383203332;TBP:-1.38552064382;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.39379824296;NR5A1,2:-1.40929713875;NFE2L1:-1.41553753769;ELF1,2,4:-1.50248565982;HLF:-1.5393525299;ALX4:-1.53973494081;NR1H4:-1.5671765415;POU2F1..3:-1.59462549411;MYB:-1.62872516719;RXR{A,B,G}:-1.66121337543;ESR1:-1.67051180683;SRF:-1.82964430961;NKX2-1,4:-1.84321943459;RXRA_VDR{dimer}:-1.86283600022;STAT5{A,B}:-2.29224773378;HOX{A5,B5}:-2.50440769862;NR6A1:-2.50540453055;HES1:-2.66257486743;PPARG:-2.82769170361;EN1,2:-3.04991463947 | |top_motifs=DBP:3.91930354962;REST:3.59768582994;RREB1:3.4848859783;PRRX1,2:3.4572065615;CUX2:3.43677683225;EGR1..3:3.42400897964;MYFfamily:3.38199135299;ZFP161:3.3123794287;OCT4_SOX2{dimer}:3.27390598195;NHLH1,2:3.22019255777;HBP1_HMGB_SSRP1_UBTF:3.18909787216;ATF2:3.17708257018;PRDM1:3.08388675028;AHR_ARNT_ARNT2:3.07230498478;RFX2..5_RFXANK_RFXAP:3.01246590696;HOXA9_MEIS1:3.00464807361;MED-1{core}:3.00368604819;RFX1:2.94652700365;ZBTB6:2.93499329675;GATA4:2.91574888158;MTE{core}:2.91250337947;POU5F1:2.90529140795;MZF1:2.86974146424;PATZ1:2.75262927299;TFAP2B:2.74990230547;SOX2:2.74303569654;GTF2I:2.74291704887;POU6F1:2.51824420666;MTF1:2.47631097599;FOXP1:2.44235234778;NKX6-1,2:2.31598166905;PAX5:2.28786918687;SOX5:2.24976815829;PAX6:2.22282604578;PAX4:2.2084386514;NKX3-2:2.18722931696;MAZ:2.18290449182;IKZF2:2.16495006905;ZNF384:2.14403675941;FOXM1:2.1354809774;HIC1:2.08744038589;BREu{core}:2.06344617205;TGIF1:2.00588710265;NANOG:1.9918037075;FOXD3:1.97155487329;SOX{8,9,10}:1.96997912548;CDC5L:1.91392991619;HOX{A4,D4}:1.90630891038;FOX{F1,F2,J1}:1.85839851837;HMGA1,2:1.75697748536;BPTF:1.74293190859;ARID5B:1.72926765417;KLF4:1.68755683405;SMAD1..7,9:1.68045380847;RBPJ:1.6656886499;LMO2:1.63000056941;GFI1B:1.61766512866;NRF1:1.57330358395;MAFB:1.50944415761;TEF:1.507323359;POU3F1..4:1.45281632609;NFIX:1.45025099191;EP300:1.42889010071;NFIL3:1.39855281873;TLX2:1.39156006099;SP1:1.3660862721;ADNP_IRX_SIX_ZHX:1.31613582969;GCM1,2:1.31408198212;SOX17:1.27491285364;ZBTB16:1.24602045548;POU1F1:1.2385332664;NKX2-3_NKX2-5:1.12900525119;HAND1,2:1.08954995237;GTF2A1,2:1.07086522655;TFDP1:1.07041751885;TOPORS:1.06502292061;FOX{I1,J2}:1.04655875418;ONECUT1,2:1.04053168543;T:1.03986253229;AR:1.02608333174;MYOD1:1.01487216315;FOXP3:0.991043163017;ZNF143:0.972093154107;EBF1:0.947007323223;LEF1_TCF7_TCF7L1,2:0.921716667229;ZIC1..3:0.882019164033;ZNF423:0.827239066693;JUN:0.826896743608;GFI1:0.779619110334;AIRE:0.742492235541;HMX1:0.722267795228;FOXL1:0.683135060717;TFAP2{A,C}:0.660307945551;NR3C1:0.645271329078;SPZ1:0.639789631157;XBP1:0.639067552047;VSX1,2:0.637701743396;TLX1..3_NFIC{dimer}:0.631995934065;CRX:0.619920864927;STAT1,3:0.581866960231;HSF1,2:0.550876969462;SREBF1,2:0.540269930847;MYBL2:0.529967910948;MEF2{A,B,C,D}:0.513805164146;CREB1:0.502462529197;FOX{D1,D2}:0.500998430861;STAT2,4,6:0.458204657593;FOXO1,3,4:0.458163937446;ZEB1:0.422406383371;XCPE1{core}:0.384423360766;FOXQ1:0.375113071455;HOX{A6,A7,B6,B7}:0.352197867918;ALX1:0.326292460053;IRF7:0.291127106548;GZF1:0.233631832337;RORA:0.219872375916;LHX3,4:0.206421823439;ZNF238:0.192304700536;PDX1:0.140484843026;ATF5_CREB3:0.108895164348;UFEwm:0.103853743014;YY1:0.0872498396368;FOXN1:0.069117028427;IKZF1:0.0403042550571;IRF1,2:-0.0337757701907;FOXA2:-0.0474215328467;PITX1..3:-0.0560380017295;PBX1:-0.0856856895679;NFY{A,B,C}:-0.115355409314;CDX1,2,4:-0.131998091327;DMAP1_NCOR{1,2}_SMARC:-0.140442962239;PAX2:-0.193938379809;ESRRA:-0.200207204174;PAX1,9:-0.216229778436;NANOG{mouse}:-0.241974539936;PAX3,7:-0.272451350624;NFATC1..3:-0.284374561861;ATF4:-0.353033513434;SPI1:-0.388961262054;NFE2L2:-0.406451872769;SNAI1..3:-0.493164555755;CEBPA,B_DDIT3:-0.523047013299;SPIB:-0.548085519441;NKX3-1:-0.565065336283;NKX2-2,8:-0.567013104078;bHLH_family:-0.634744631823;TBX4,5:-0.657489355947;NFE2:-0.684736891574;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.709672622843;TFCP2:-0.750068319899;GATA6:-0.798988472032;ETS1,2:-0.805124433278;HIF1A:-0.840483926703;TFAP4:-0.848647546988;EVI1:-0.945732860756;TP53:-0.952532396772;ATF6:-0.976542306667;TEAD1:-1.00999330559;HNF1A:-1.01518822787;TAL1_TCF{3,4,12}:-1.0181653304;ZNF148:-1.03142791431;HNF4A_NR2F1,2:-1.06611552303;BACH2:-1.07292131193;RUNX1..3:-1.12687303552;GLI1..3:-1.13752499946;FOSL2:-1.18662887974;FOS_FOS{B,L1}_JUN{B,D}:-1.18913685252;PAX8:-1.22622664872;NFKB1_REL_RELA:-1.3162356343;ELK1,4_GABP{A,B1}:-1.33224148911;E2F1..5:-1.35383203332;TBP:-1.38552064382;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.39379824296;NR5A1,2:-1.40929713875;NFE2L1:-1.41553753769;ELF1,2,4:-1.50248565982;HLF:-1.5393525299;ALX4:-1.53973494081;NR1H4:-1.5671765415;POU2F1..3:-1.59462549411;MYB:-1.62872516719;RXR{A,B,G}:-1.66121337543;ESR1:-1.67051180683;SRF:-1.82964430961;NKX2-1,4:-1.84321943459;RXRA_VDR{dimer}:-1.86283600022;STAT5{A,B}:-2.29224773378;HOX{A5,B5}:-2.50440769862;NR6A1:-2.50540453055;HES1:-2.66257486743;PPARG:-2.82769170361;EN1,2:-3.04991463947 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10151-102I7;search_select_hide=table117:FF:10151-102I7 | |||
}} | }} | ||
Latest revision as of 12:22, 3 June 2020
| Name: | amygdala, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12311 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12311
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12311
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.048 |
| 10 | 10 | 0.049 |
| 100 | 100 | 0.374 |
| 101 | 101 | 0.378 |
| 102 | 102 | 0.9 |
| 103 | 103 | 0.0703 |
| 104 | 104 | 0.151 |
| 105 | 105 | 0.207 |
| 106 | 106 | 0.0436 |
| 107 | 107 | 0.111 |
| 108 | 108 | 0.993 |
| 109 | 109 | 0.00174 |
| 11 | 11 | 0.013 |
| 110 | 110 | 0.0577 |
| 111 | 111 | 0.16 |
| 112 | 112 | 0.275 |
| 113 | 113 | 0.571 |
| 114 | 114 | 0.106 |
| 115 | 115 | 0.966 |
| 116 | 116 | 0.205 |
| 117 | 117 | 0.0122 |
| 118 | 118 | 0.147 |
| 119 | 119 | 0.164 |
| 12 | 12 | 0.633 |
| 120 | 120 | 0.204 |
| 121 | 121 | 0.194 |
| 122 | 122 | 0.834 |
| 123 | 123 | 0.747 |
| 124 | 124 | 0.334 |
| 125 | 125 | 0.242 |
| 126 | 126 | 0.0335 |
| 127 | 127 | 0.435 |
| 128 | 128 | 0.187 |
| 129 | 129 | 0.386 |
| 13 | 13 | 0.00218 |
| 130 | 130 | 0.307 |
| 131 | 131 | 0.0492 |
| 132 | 132 | 0.648 |
| 133 | 133 | 0.0678 |
| 134 | 134 | 0.407 |
| 135 | 135 | 0.325 |
| 136 | 136 | 0.00345 |
| 137 | 137 | 0.774 |
| 138 | 138 | 0.908 |
| 139 | 139 | 0.101 |
| 14 | 14 | 0.925 |
| 140 | 140 | 0.837 |
| 141 | 141 | 0.437 |
| 142 | 142 | 0.794 |
| 143 | 143 | 0.0375 |
| 144 | 144 | 0.898 |
| 145 | 145 | 0.172 |
| 146 | 146 | 0.495 |
| 147 | 147 | 0.94 |
| 148 | 148 | 0.23 |
| 149 | 149 | 0.201 |
| 15 | 15 | 0.0707 |
| 150 | 150 | 0.16 |
| 151 | 151 | 0.577 |
| 152 | 152 | 0.0874 |
| 153 | 153 | 0.99 |
| 154 | 154 | 0.489 |
| 155 | 155 | 0.582 |
| 156 | 156 | 0.313 |
| 157 | 157 | 0.459 |
| 158 | 158 | 0.513 |
| 159 | 159 | 0.0389 |
| 16 | 16 | 0.0496 |
| 160 | 160 | 0.223 |
| 161 | 161 | 0.159 |
| 162 | 162 | 0.793 |
| 163 | 163 | 0.796 |
| 164 | 164 | 0.0425 |
| 165 | 165 | 0.035 |
| 166 | 166 | 0.81 |
| 167 | 167 | 0.663 |
| 168 | 168 | 0.398 |
| 169 | 169 | 0.00987 |
| 17 | 17 | 0.125 |
| 18 | 18 | 0.112 |
| 19 | 19 | 0.201 |
| 2 | 2 | 0.8 |
| 20 | 20 | 0.202 |
| 21 | 21 | 0.0781 |
| 22 | 22 | 0.202 |
| 23 | 23 | 0.351 |
| 24 | 24 | 0.0392 |
| 25 | 25 | 0.49 |
| 26 | 26 | 7.77333e-4 |
| 27 | 27 | 0.673 |
| 28 | 28 | 0.684 |
| 29 | 29 | 0.00827 |
| 3 | 3 | 0.0482 |
| 30 | 30 | 0.936 |
| 31 | 31 | 0.806 |
| 32 | 32 | 0.0348 |
| 33 | 33 | 0.0517 |
| 34 | 34 | 0.654 |
| 35 | 35 | 0.58 |
| 36 | 36 | 0.131 |
| 37 | 37 | 0.0339 |
| 38 | 38 | 0.302 |
| 39 | 39 | 0.273 |
| 4 | 4 | 0.636 |
| 40 | 40 | 0.0252 |
| 41 | 41 | 0.263 |
| 42 | 42 | 0.215 |
| 43 | 43 | 0.119 |
| 44 | 44 | 0.155 |
| 45 | 45 | 0.651 |
| 46 | 46 | 0.078 |
| 47 | 47 | 0.0549 |
| 48 | 48 | 0.0462 |
| 49 | 49 | 0.201 |
| 5 | 5 | 0.483 |
| 50 | 50 | 0.371 |
| 51 | 51 | 0.384 |
| 52 | 52 | 0.511 |
| 53 | 53 | 0.803 |
| 54 | 54 | 0.386 |
| 55 | 55 | 0.566 |
| 56 | 56 | 0.468 |
| 57 | 57 | 0.374 |
| 58 | 58 | 0.283 |
| 59 | 59 | 0.0668 |
| 6 | 6 | 0.957 |
| 60 | 60 | 0.0653 |
| 61 | 61 | 0.0906 |
| 62 | 62 | 0.168 |
| 63 | 63 | 0.2 |
| 64 | 64 | 0.187 |
| 65 | 65 | 0.227 |
| 66 | 66 | 0.127 |
| 67 | 67 | 0.276 |
| 68 | 68 | 0.127 |
| 69 | 69 | 0.479 |
| 7 | 7 | 0.0527 |
| 70 | 70 | 0.0463 |
| 71 | 71 | 0.0101 |
| 72 | 72 | 0.347 |
| 73 | 73 | 0.0295 |
| 74 | 74 | 0.685 |
| 75 | 75 | 0.0315 |
| 76 | 76 | 0.42 |
| 77 | 77 | 0.166 |
| 78 | 78 | 0.00163 |
| 79 | 79 | 0.26 |
| 8 | 8 | 0.0762 |
| 80 | 80 | 0.383 |
| 81 | 81 | 0.638 |
| 82 | 82 | 0.588 |
| 83 | 83 | 0.0321 |
| 84 | 84 | 0.68 |
| 85 | 85 | 0.256 |
| 86 | 86 | 0.2 |
| 87 | 87 | 2.35461e-4 |
| 88 | 88 | 0.825 |
| 89 | 89 | 0.361 |
| 9 | 9 | 0.362 |
| 90 | 90 | 0.0733 |
| 91 | 91 | 0.698 |
| 92 | 92 | 0.583 |
| 93 | 93 | 0.883 |
| 94 | 94 | 0.192 |
| 95 | 95 | 0.0105 |
| 96 | 96 | 0.972 |
| 97 | 97 | 0.757 |
| 98 | 98 | 0.257 |
| 99 | 99 | 0.475 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12311
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010151 human amygdala - adult donor sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0001876 (amygdala)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
0000349 (limbic system)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010151 (human amygdala - adult donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
