FFCP PHASE1:Hg19::chr1:35246775..35246797,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2707 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4285 | |||
|TSSclassifier=strong | |||
|UniProt=O75712 | |||
|association_with_transcript=0bp_to_ENST00000373366,NM_024009,uc001bxx.2_5end | |||
|cluster_id=chr1:35246775..35246797,+ | |||
|coexpression_cluster_id=C511 | |||
|description=CAGE_peak_2_at_GJB3_5end | |||
|id=chr1:35246775..35246797,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.25e-46!254;CL:0002076!2.76e-27!43;CL:0000223!4.97e-21!59;CL:0002368!5.03e-12!13;CL:0002251!1.02e-11!21;CL:0002159!1.06e-08!13;CL:0002202!3.09e-08!9;CL:0002632!3.09e-08!9;CL:1000507!4.93e-08!12;CL:1000494!4.93e-08!12;CL:1000449!9.31e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.64e-23;42!CL:0002251;4.67e-16;20!CL:0002368;1.40e-14;13!CL:1000507;4.78e-14;10!CL:1000494;4.78e-14;10!CL:0002159;2.58e-11;14!CL:1000449;1.02e-10;15!CL:0000349;7.60e-10;19!CL:0002202;2.98e-09;9!CL:0002632;2.98e-09;9!CL:1000497;3.84e-09;17!CL:0002518;3.84e-09;17!CL:0000244;1.88e-08;4!CL:0000731;1.88e-08;4!CL:0000622;7.75e-08;5!CL:0002681;2.47e-07;12!CL:0002584;2.47e-07;12!CL:0002577;8.79e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.24e-54,253;CL:0002076,5.08e-33,42;CL:0000223,3.84e-24,58;CL:0002251,5.02e-16,20;CL:0002368,1.47e-14,13;CL:1000507,5.61e-14,10;CL:1000494,5.61e-14,10;CL:0002159,2.43e-11,14;CL:1000449,1.17e-10,15;CL:0000349,7.85e-10,19;CL:0002202,3.07e-09,9;CL:0002632,3.07e-09,9;CL:1000497,4.29e-09,17;CL:0002518,4.29e-09,17;CL:0000244,1.85e-08,4;CL:0000731,1.85e-08,4;CL:0000622,7.81e-08,5;CL:0002681,2.89e-07,12;CL:0002584,2.89e-07,12;CL:0000076,5.97e-07,63;CL:0002577,8.96e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;1.09e-12;58 | |||
|ontology_enrichment_disease=DOID:305!1.62e-24!106;DOID:0050687!2.16e-15!143;DOID:1749!4.33e-12!14;DOID:299!1.02e-11!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.85e-17;14!DOID:299;2.60e-12;25!DOID:305;6.65e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.01e-25,106;DOID:1749,6.72e-17,14;DOID:0050687,5.96e-16,143;DOID:299,2.03e-12,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.05e-26!169;UBERON:0000925!9.05e-26!169;UBERON:0006595!9.05e-26!169;UBERON:0001004!1.47e-18!72;UBERON:0001007!2.03e-17!155;UBERON:0001555!2.03e-17!155;UBERON:0007026!2.03e-17!155;UBERON:0000077!2.29e-16!130;UBERON:0000065!3.49e-16!53;UBERON:0008947!2.10e-13!38;UBERON:0003258!2.10e-13!38;UBERON:0006554!5.43e-13!44;UBERON:0004921!6.48e-13!129;UBERON:0004185!6.48e-13!129;UBERON:0000072!8.56e-13!46;UBERON:0001008!1.70e-12!45;UBERON:0005631!7.09e-12!14;UBERON:0000158!7.09e-12!14;UBERON:0000464!5.44e-11!104;UBERON:0000064!6.62e-11!219;UBERON:0001041!3.07e-10!98;UBERON:0003064!3.24e-10!37;UBERON:0000161!3.80e-10!35;UBERON:0005911!5.26e-10!82;UBERON:0000062!1.19e-09!511;UBERON:0005153!2.12e-09!37;UBERON:0003124!5.36e-09!7;UBERON:0000466!5.59e-09!126;UBERON:0005157!1.47e-08!51;UBERON:0001737!2.24e-08!9;UBERON:0000058!3.49e-08!26;UBERON:0009773!4.93e-08!12;UBERON:0001231!4.93e-08!12;UBERON:0004810!4.93e-08!12;UBERON:0005156!5.14e-08!59;UBERON:0000990!5.14e-08!59;UBERON:0003104!8.78e-08!238;UBERON:0009142!8.78e-08!238;UBERON:0000080!8.94e-08!18;UBERON:0002120!8.94e-08!18;UBERON:0004875!8.94e-08!18;UBERON:0005721!8.94e-08!18;UBERON:0005754!8.94e-08!18;UBERON:0007297!8.94e-08!18;UBERON:0005178!9.29e-08!34;UBERON:0002224!9.29e-08!34;UBERON:0005177!1.13e-07!107;UBERON:0004876!1.13e-07!20;UBERON:0005910!1.20e-07!6;UBERON:0001557!1.81e-07!19;UBERON:0005181!2.25e-07!35;UBERON:0006555!2.77e-07!17;UBERON:0005103!2.77e-07!17;UBERON:0000083!2.77e-07!17;UBERON:0009201!2.77e-07!17;UBERON:0004819!2.77e-07!17;UBERON:0006553!2.77e-07!17;UBERON:0003074!2.77e-07!17;UBERON:0003060!2.77e-07!17;UBERON:0000365!3.06e-07!5;UBERON:0000995!4.87e-07!21;UBERON:0004175!5.05e-07!25;UBERON:0000166!5.41e-07!21;UBERON:0000922!5.58e-07!612;UBERON:0000468!5.99e-07!659;UBERON:0007196!6.56e-07!14;UBERON:0001558!6.56e-07!14;UBERON:0004211!9.31e-07!16;UBERON:0001285!9.31e-07!16;UBERON:0007684!9.31e-07!16;UBERON:0003220!9.31e-07!16;UBERON:0004208!9.31e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;4.78e-14;10!UBERON:0009773;4.78e-14;10!UBERON:0001231;4.78e-14;10!UBERON:0004810;4.78e-14;10!UBERON:0006554;1.06e-11;30!UBERON:0001008;1.06e-11;30!UBERON:0001737;2.88e-11;9!UBERON:0001557;2.88e-11;9!UBERON:0000065;4.92e-11;44!UBERON:0005631;5.60e-11;10!UBERON:0000158;5.60e-11;10!UBERON:0006555;1.02e-10;15!UBERON:0004819;1.02e-10;15!UBERON:0001285;1.02e-10;15!UBERON:0007684;1.02e-10;15!UBERON:0000072;1.37e-10;37!UBERON:0001004;6.20e-10;65!UBERON:0000365;1.05e-09;5!UBERON:0000486;6.90e-09;12!UBERON:0000478;2.09e-08;24!UBERON:0005910;5.78e-08;6!UBERON:0001987;1.02e-07;4!UBERON:0000344;1.26e-07;20!UBERON:0000161;1.35e-07;19!UBERON:0000166;1.35e-07;19!UBERON:0000165;1.86e-07;28!UBERON:0001225;2.47e-07;12!UBERON:0008987;2.47e-07;12!UBERON:0003729;5.64e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.38e-24,160;UBERON:0000925,1.38e-24,160;UBERON:0006595,1.38e-24,160;UBERON:0001004,2.47e-18,74;UBERON:0005631,7.97e-17,14;UBERON:0000158,7.97e-17,14;UBERON:0006554,1.65e-15,47;UBERON:0001007,1.96e-15,145;UBERON:0001555,1.96e-15,145;UBERON:0007026,1.96e-15,145;UBERON:0001008,4.98e-15,48;UBERON:0000065,7.29e-15,54;UBERON:0004810,5.61e-14,10;UBERON:0000072,2.26e-12,47;UBERON:0004921,2.60e-12,118;UBERON:0003124,3.15e-12,7;UBERON:0001041,1.59e-11,87;UBERON:0008947,2.23e-11,38;UBERON:0003258,2.23e-11,38;UBERON:0001737,2.45e-11,9;UBERON:0004211,1.17e-10,15;UBERON:0009773,1.17e-10,15;UBERON:0001231,1.17e-10,15;UBERON:0001285,1.17e-10,15;UBERON:0007684,1.17e-10,15;UBERON:0004208,1.17e-10,15;UBERON:0000161,1.72e-10,36;UBERON:0006555,7.94e-10,16;UBERON:0004819,7.94e-10,16;UBERON:0000365,1.03e-09,5;UBERON:0001557,1.37e-09,19;UBERON:0000166,1.20e-08,22;UBERON:0000478,2.16e-08,24;UBERON:0005910,5.66e-08,6;UBERON:0001987,1.06e-07,4;UBERON:0004340,1.06e-07,4;UBERON:0000344,1.28e-07,20;UBERON:0004923,1.44e-07,66;UBERON:0001225,2.89e-07,12;UBERON:0008987,2.89e-07,12;UBERON:0003102,2.92e-07,99;UBERON:0000165,4.75e-07,29;UBERON:0000930,4.75e-07,29;UBERON:0003729,5.52e-07,13 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,4.17747692052565,24.423040879035,25.3391991671,25.0578629317031,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.464448369948228,25.74379428541,29.2169741214903,19.227208528673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.0654895377488563,21.8577172975525,18.168437696437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.752044242129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.2160845618413,18.8194823207676,17.7818849141182,0,0.397589304964456,0.116193942869518,0.207322110030741,0.504641701751257,0,0,0,0,0,0,2.60274960087657,2.02301628093722,5.06123162755312,4.52205288202815,3.92182999366331,4.98268300133303,4.31460186112526,2.94332197688019,1.92373578473195,0,0,0,0,0,0.982827216677626,0,0,0.983907508344908,0,38.4125998930189,15.7362454560667,28.9523440545497,19.8139272639253,0,0,0,0.115930404975077,0,0,0,0,3.95102198979638,0,0,0,0,14.9974134378843,19.3179447428688,10.9166824876638,20.8671357897637,21.2162775115192,38.3382679165211,0,0,0.207328115540772,0,0.12624243342638,0.126995788584338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,30.3127571446259,59.9167582237789,35.0772740262429,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,19.0481146788121,27.532215691833,0,0,0.131124414959424,9.02399225814824,11.1672238801401,10.980896768476,7.30696123266303,5.91089121800104,0,0,0,0,1.08378575017541,1.00337954770971,14.0181950174771,14.1282921517883,6.49236788694317,0,0,0.512900250232778,0.328014645699706,0,0.206082023295445,0,0,18.9507627538737,26.0024098414608,0,0,0,0,0,0,0,0,0,15.040927297849,10.7626437724459,7.01869918720213,14.7690360049103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,24.9215271959076,24.8011841948241,21.7781969722645,0.659006605437454,30.5658814596573,30.3248656201726,41.2390042789108,31.9315526287674,0,0,0,0,0,0,0,0,0,0,17.8879357666153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8071081061233,0,0,0,0,64.9384998486517,9.2059051058118,80.4761039499988,0,0,0,0,0,0.398495976502139,0.828851746593443,0,0.613612095012929,0,0,9.52604522161664,1.61119057208048,0,1.67693789582787,0,0,0,0,0,0.520855522170466,0,0,4.43794448313449,0.762760950878299,0.709163045303809,0,0,0,0,0,0,0,0.295547618953547,0.219385397153973,0.980446171670911,5.29810228258692,0.846452843541768,0,0,0,0,51.0401855571071,6.04544116452291,22.3874605927827,0,0,0,0,0,0,0,0,0,3.91758739581955,0,0,1.99052386215701,0.176915129006678,0,0,0,0,0,0,0,0,10.3702248034008,0.971121518136371,0,0,0,0,0.300646838828985,0,0,0,0,0,0.853828638089378,0,1.90915712168644,11.0731409078247,20.8942095792966,0.52418000472609,0.171986032471617,3.87025325156341,4.38535902517113,4.76269650908614,5.14041787388623,0,0.451961481561065,0,0,0,8.40870945759653,3.04603516955828,0.426905989478705,1.39866726707491,4.7549837660855,0,0,5.04191792958524,0.49701014226173,11.0776196269894,0,0,0,0,0,0,0,0,0,0,0,0,2.99518500748487,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,1.10031549277787,0,0.2249738915515,0.77380195455795,0.0607495566580247,11.7402140659743,0.157611414598396,0.157363764404994,0,0,9.97959026061116,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0.171086837884329,9.16259529011673,0.213574825135389,0.157204305099666,0,0.496166021811951,0,0,12.7668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0.214441591374926,0,0,0.231522474323834,0,0,0,0,0.530067437837643,0.771656153083659,1.01365464391844,0,0,0,0,0,0.132864840313363,0,0,0.245772908753719,12.8900395248762,0,0,0,0,0,24.4789138509028,9.95323616052756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.90738592505128,2.47736419030255,11.0057159113007,4.73655231216387,0,0,0,0.150420656698515,0,0,0,1.63771917510097,13.4549038457511,0,0,0,0.0634158101939068,0,0,0.496211178389294,0,4.08839768446705,0,0,0,0,2.57236873471653,0,0,0,0,4.96414131712666,7.5637353286607,0.941917114206168,0,3.08299379645168,0,0,0,0,0,0,0,0,4.14432328326074,3.92652497316085,1.38251932362818,0,0.118332000730565,0.170426809518315,0.423387050190929,4.35303050233695,1.86123831398592,4.77769469488717,1.90154234056247,3.33710794291826,5.12055284925532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.42794178980367,11.2926358949021,10.2708949362135,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01988829741982,0.534434810531121,0,0,0.0757786982182394,0,0,0,1.27940389140589,0,0,0,0.448527450322454,0.0636471582781649,0,3.04803447055746,1.02669990325584,3.03084238565644,3.87299909120452,0.99798106963804,8.54734320415232,0.426909383510862,0,3.4133576800503,0,0.122241444182866,0,0,0,0 | |||
|short_description=p2@GJB3 | |||
}} |
Latest revision as of 17:48, 17 September 2015
Short description: | p2@GJB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GJB3_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 0bp_to_ENST00000373366, NM_024009, uc001bxx.2_5end |
EntrezGene: | GJB3 |
HGNC: | 4285 |
UniProt: | O75712 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.24e-54 | 253 |
endo-epithelial cell | 5.08e-33 | 42 |
endodermal cell | 3.84e-24 | 58 |
epithelial cell of alimentary canal | 5.02e-16 | 20 |
respiratory epithelial cell | 1.47e-14 | 13 |
kidney tubule cell | 5.61e-14 | 10 |
nephron tubule epithelial cell | 5.61e-14 | 10 |
general ecto-epithelial cell | 2.43e-11 | 14 |
epithelial cell of nephron | 1.17e-10 | 15 |
extraembryonic cell | 7.85e-10 | 19 |
epithelial cell of tracheobronchial tree | 3.07e-09 | 9 |
epithelial cell of lower respiratory tract | 3.07e-09 | 9 |
kidney cell | 4.29e-09 | 17 |
kidney epithelial cell | 4.29e-09 | 17 |
transitional epithelial cell | 1.85e-08 | 4 |
urothelial cell | 1.85e-08 | 4 |
acinar cell | 7.81e-08 | 5 |
kidney cortical cell | 2.89e-07 | 12 |
renal cortical epithelial cell | 2.89e-07 | 12 |
squamous epithelial cell | 5.97e-07 | 63 |
placental epithelial cell | 8.96e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.01e-25 | 106 |
squamous cell carcinoma | 6.72e-17 | 14 |
cell type cancer | 5.96e-16 | 143 |
adenocarcinoma | 2.03e-12 | 25 |