FFCP PHASE1:Hg19::chr4:2420357..2420413,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:2420357..2420413,- to FFCP PHASE1:Hg19::chr4:2420357..2420413,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57732 | |EntrezGene=57732 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29334 | |HGNC=29334 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HCC9,E9PB54,E9PG77,Q7Z6J3 | |UniProt=Q9HCC9,E9PB54,E9PG77,Q7Z6J3 | ||
|association_with_transcript=0bp_to_ENST00000290974,ENST00000509171,ENST00000511071,NM_001172656,NM_001172657,NM_001172658,NM_020972,uc003gex.1,uc003gez.2,uc011bvl.1_5end | |||
|cluster_id=chr4:2420357..2420413,- | |||
|coexpression_cluster_id=C2519 | |||
|description=CAGE_peak_1_at_ZFYVE28_5end | |||
|id=chr4:2420357..2420413,- | |||
|ontology_enrichment_celltype=CL:0000738!5.46e-12!140;CL:0002087!7.49e-11!119;CL:0000791!3.81e-10!18;CL:0000789!3.81e-10!18;CL:0002420!3.81e-10!18;CL:0002419!3.81e-10!18;CL:0000790!3.81e-10!18;CL:0002031!8.52e-10!124;CL:0000766!1.19e-09!76;CL:0000557!3.45e-09!71;CL:0002057!9.78e-09!42;CL:0002194!2.11e-08!63;CL:0000576!2.11e-08!63;CL:0000040!2.11e-08!63;CL:0000559!2.11e-08!63;CL:0000839!2.82e-08!70;CL:0000860!3.61e-08!45;CL:0002009!5.70e-08!65;CL:0000988!6.72e-08!182;CL:0000084!7.48e-08!25;CL:0000827!7.48e-08!25;CL:0000037!1.57e-07!172;CL:0000566!1.57e-07!172;CL:0002032!4.03e-07!165;CL:0000837!4.03e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.32e-11;18!CL:0000789;5.32e-11;18!CL:0002419;5.32e-11;18!CL:0000860;3.59e-10;33!CL:0002057;3.59e-10;33!CL:0000473;3.89e-10;39!CL:0000234;3.89e-10;39!CL:0000084;1.75e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,9.79e-15,136;CL:0002087,6.04e-13,115;CL:0002031,3.55e-12,120;CL:0000766,3.91e-12,72;CL:0000557,1.90e-11,67;CL:0000791,6.15e-11,18;CL:0000789,6.15e-11,18;CL:0002420,6.15e-11,18;CL:0002419,6.15e-11,18;CL:0000790,6.15e-11,18;CL:0000473,6.34e-11,48;CL:0000234,6.34e-11,48;CL:0000839,1.54e-10,66;CL:0002194,1.64e-10,59;CL:0000576,1.64e-10,59;CL:0000040,1.64e-10,59;CL:0000559,1.64e-10,59;CL:0000988,2.15e-10,177;CL:0002009,3.85e-10,61;CL:0000037,4.61e-10,168;CL:0002032,1.80e-09,161;CL:0000837,1.80e-09,161;CL:0000860,3.57e-09,42;CL:0002057,3.57e-09,42;CL:0000084,1.81e-08,25;CL:0000827,1.81e-08,25;CL:0000763,4.38e-07,108;CL:0000049,4.38e-07,108 | |||
|ontology_enrichment_development_v019=CL:0000790;5.32e-11;18!CL:0002057;4.66e-07;42!UBERON:0006601;7.53e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.17e-30!115;UBERON:0001049!2.70e-21!57;UBERON:0005068!2.70e-21!57;UBERON:0006241!2.70e-21!57;UBERON:0007135!2.70e-21!57;UBERON:0002616!2.92e-18!59;UBERON:0000955!1.32e-17!69;UBERON:0006238!1.32e-17!69;UBERON:0003080!1.14e-16!42;UBERON:0002780!2.17e-16!41;UBERON:0001890!2.17e-16!41;UBERON:0006240!2.17e-16!41;UBERON:0001017!4.20e-16!82;UBERON:0005743!1.60e-15!86;UBERON:0000073!2.28e-15!94;UBERON:0001016!2.28e-15!94;UBERON:0003075!1.52e-14!86;UBERON:0007284!1.52e-14!86;UBERON:0002346!6.75e-14!90;UBERON:0002020!1.00e-13!34;UBERON:0003528!1.00e-13!34;UBERON:0001893!1.51e-13!34;UBERON:0002791!4.69e-13!33;UBERON:0001869!1.06e-12!32;UBERON:0002193!8.01e-12!112;UBERON:0002619!1.21e-11!22;UBERON:0002390!1.78e-11!102;UBERON:0003061!1.78e-11!102;UBERON:0001950!1.02e-10!20;UBERON:0003056!1.05e-09!61;UBERON:0000956!4.69e-09!25;UBERON:0000203!4.69e-09!25;UBERON:0002371!1.14e-07!80;UBERON:0000025!1.26e-07!194;UBERON:0000153!2.79e-07!129;UBERON:0007811!2.79e-07!129;UBERON:0000033!7.72e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;7.24e-13;41!UBERON:0001890;7.24e-13;41!UBERON:0000073;1.38e-12;53!UBERON:0002616;1.38e-12;53!UBERON:0003528;1.55e-12;34!UBERON:0002020;1.55e-12;34!UBERON:0002619;1.57e-12;22!UBERON:0001893;1.89e-12;34!UBERON:0002791;3.47e-12;32!UBERON:0001869;3.57e-12;32!UBERON:0001950;1.66e-11;20!UBERON:0000956;1.21e-09;25!UBERON:0000203;1.21e-09;25!UBERON:0000955;3.90e-09;68!UBERON:0007023;5.51e-09;114!UBERON:0001017;1.20e-08;75!UBERON:0001016;2.73e-08;83!UBERON:0000125;6.39e-07;9!UBERON:0002308;6.39e-07;9!UBERON:0002420;8.81e-07;9!UBERON:0007245;8.81e-07;9!UBERON:0010009;8.81e-07;9!UBERON:0010011;8.81e-07;9!UBERON:0000454;8.81e-07;9 | |||
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| ||
|short_description=p1@ZFYVE28 | |||
}} | }} |
Latest revision as of 09:41, 17 September 2015
Short description: | p1@ZFYVE28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ZFYVE28_5end |
Coexpression cluster: | C2519_cerebellum_CD8_Natural_CD4_Mast_Basophils_Peripheral |
Association with transcript: | 0bp_to_ENST00000290974, ENST00000509171, ENST00000511071, NM_001172656, NM_001172657, NM_001172658, NM_020972, uc003gex.1, uc003gez.2, uc011bvl.1_5end |
EntrezGene: | ZFYVE28 |
HGNC: | 29334 |
UniProt: | Q9HCC9E9PB54E9PG77Q7Z6J3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 9.79e-15 | 136 |
nongranular leukocyte | 6.04e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 3.55e-12 | 120 |
myeloid leukocyte | 3.91e-12 | 72 |
granulocyte monocyte progenitor cell | 1.90e-11 | 67 |
mature alpha-beta T cell | 6.15e-11 | 18 |
alpha-beta T cell | 6.15e-11 | 18 |
immature T cell | 6.15e-11 | 18 |
mature T cell | 6.15e-11 | 18 |
immature alpha-beta T cell | 6.15e-11 | 18 |
defensive cell | 6.34e-11 | 48 |
phagocyte | 6.34e-11 | 48 |
myeloid lineage restricted progenitor cell | 1.54e-10 | 66 |
monopoietic cell | 1.64e-10 | 59 |
monocyte | 1.64e-10 | 59 |
monoblast | 1.64e-10 | 59 |
promonocyte | 1.64e-10 | 59 |
hematopoietic cell | 2.15e-10 | 177 |
macrophage dendritic cell progenitor | 3.85e-10 | 61 |
hematopoietic stem cell | 4.61e-10 | 168 |
hematopoietic oligopotent progenitor cell | 1.80e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.80e-09 | 161 |
classical monocyte | 3.57e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.57e-09 | 42 |
T cell | 1.81e-08 | 25 |
pro-T cell | 1.81e-08 | 25 |
myeloid cell | 4.38e-07 | 108 |
common myeloid progenitor | 4.38e-07 | 108 |