FFCP PHASE1:Mm9::chr7:51683968..51683999,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=272381|HGNC=|MCL_coexpression_id=1|UniProt=D3YZP3|association_with_transcript=-388bp_to_ENSMUST00000127790_5end|description=CAGE_peak_9_at_Lrrc4b_5end|id=chr7:51683968..51683999,+|ontology_enrichment_celltype=CL:0000117!1.62e-17!23;CL:0000337!1.62e-17!23;CL:0000540!4.11e-17!33;CL:0000047!4.11e-17!33;CL:0000031!4.11e-17!33;CL:0000404!4.11e-17!33;CL:0002319!3.27e-15!43;CL:0000221!1.40e-14!44;CL:0000133!1.40e-14!44;CL:0000393!9.39e-13!39;CL:0000211!9.39e-13!39;CL:0000055!2.25e-11!50|ontology_enrichment_celltype_v019_2=CL:0000117,2.23e-21,23;CL:0000337,2.23e-21,23;CL:0000540,8.03e-14,33;CL:0000047,8.03e-14,33;CL:0000031,8.03e-14,33;CL:0000404,8.03e-14,33;CL:0000393,3.69e-11,39;CL:0000211,3.69e-11,39;CL:0002319,8.41e-10,43;CL:0000221,1.68e-09,44;CL:0000133,1.68e-09,44;CL:0002610,1.39e-07,3;CL:0002608,2.61e-07,3;CL:0002612,3.38e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.98e-42!73;UBERON:0005743!2.98e-42!73;UBERON:0000073!2.03e-40!75;UBERON:0001016!2.03e-40!75;UBERON:0001049!1.77e-36!52;UBERON:0005068!1.77e-36!52;UBERON:0006241!1.77e-36!52;UBERON:0007135!1.77e-36!52;UBERON:0000955!3.49e-35!50;UBERON:0006238!3.49e-35!50;UBERON:0002616!4.64e-34!49;UBERON:0000033!8.13e-33!63;UBERON:0002346!1.46e-32!71;UBERON:0003075!1.46e-32!71;UBERON:0007284!1.46e-32!71;UBERON:0004121!8.74e-32!102;UBERON:0000924!8.74e-32!102;UBERON:0006601!8.74e-32!102;UBERON:0003080!1.19e-29!40;UBERON:0003056!4.10e-29!49;UBERON:0002780!9.98e-29!39;UBERON:0001890!9.98e-29!39;UBERON:0006240!9.98e-29!39;UBERON:0002020!7.31e-28!34;UBERON:0002791!9.27e-24!29;UBERON:0003528!9.27e-24!29;UBERON:0001893!9.27e-24!29;UBERON:0007811!5.49e-19!86;UBERON:0000153!2.86e-18!94;UBERON:0000956!1.60e-17!21;UBERON:0001869!1.60e-17!21;UBERON:0000203!1.60e-17!21;UBERON:0002619!1.12e-14!17;UBERON:0002021!1.75e-10!10;UBERON:0000411!1.75e-10!10;UBERON:0001950!1.75e-10!10;UBERON:0000025!2.21e-08!114;UBERON:0002420!2.43e-07!8;UBERON:0007245!2.43e-07!8;UBERON:0010009!2.43e-07!8;UBERON:0010011!2.43e-07!8;UBERON:0000454!2.43e-07!8;UBERON:0004111!2.68e-07!122;UBERON:0003076!3.55e-07!12;UBERON:0003057!3.55e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.27e-48,54;UBERON:0002020,5.42e-47,34;UBERON:0001049,1.18e-41,52;UBERON:0005068,1.18e-41,52;UBERON:0006241,1.18e-41,52;UBERON:0007135,1.18e-41,52;UBERON:0001017,6.29e-39,73;UBERON:0001016,1.06e-37,75;UBERON:0003528,4.99e-37,29;UBERON:0002791,4.99e-37,29;UBERON:0001893,4.99e-37,29;UBERON:0003080,1.60e-36,40;UBERON:0000955,1.24e-35,47;UBERON:0006238,1.24e-35,47;UBERON:0002780,1.58e-34,39;UBERON:0001890,1.58e-34,39;UBERON:0006240,1.58e-34,39;UBERON:0002616,1.90e-33,46;UBERON:0002346,1.44e-32,64;UBERON:0003075,1.44e-32,64;UBERON:0007284,1.44e-32,64;UBERON:0000956,5.36e-31,21;UBERON:0001869,5.36e-31,21;UBERON:0000203,5.36e-31,21;UBERON:0002619,3.93e-30,17;UBERON:0003056,1.07e-28,49;UBERON:0004121,2.95e-28,95;UBERON:0000924,2.95e-28,95;UBERON:0006601,2.95e-28,95;UBERON:0010371,1.05e-27,73;UBERON:0002021,2.14e-24,10;UBERON:0000411,2.14e-24,10;UBERON:0001950,2.14e-24,10;UBERON:0010314,1.46e-20,92;UBERON:0000025,2.97e-15,114;UBERON:0004111,8.51e-14,122;UBERON:0001948,5.45e-11,5;UBERON:0002315,5.45e-11,5;UBERON:0011216,4.54e-10,194;UBERON:0002240,4.10e-09,6;UBERON:0005174,4.10e-09,6;UBERON:0001137,4.10e-09,6;UBERON:0000369,2.61e-08,5;UBERON:0002435,2.61e-08,5;UBERON:0000204,2.61e-08,5;UBERON:0010082,2.61e-08,5;UBERON:0001954,3.53e-08,7;UBERON:0003022,3.53e-08,7;UBERON:0002421,3.53e-08,7;UBERON:0000349,3.53e-08,7;UBERON:0002600,3.53e-08,7;UBERON:0004684,1.39e-07,3;UBERON:0002275,1.39e-07,3;UBERON:0000483,1.39e-07,174;UBERON:0002420,1.83e-07,8;UBERON:0007245,1.83e-07,8;UBERON:0010009,1.83e-07,8;UBERON:0010011,1.83e-07,8;UBERON:0000454,1.83e-07,8;UBERON:0000119,2.03e-07,176;UBERON:0002257,3.38e-07,3|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.219686182734472,0.194429899074283,0.279972843250725,0,0,0,0,0,0,0,1.01158230429799,0.528990979272033,0.633831403506179,0,0,0,0,0,0.599200221036809,0,0.414758449233911,2.16009501330705,0.630974884054146,2.28520787523043,1.32521124570968,2.08234358665422,2.01275489138296,1.83843757322004,2.20231761998777,3.83062014255563,1.38245879930619,0.923204014111357,3.01909223887952,1.04182674111352,0.558365998002762,0.56276261003168,1.37518422999129,2.06240009831567,1.70846016958924,1.67759501242771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0,0.23517741427141,0,0,0,0,0,0,0,0,1.17112318804619,0.41889341362691,0,0,0,0,2.54644086988199,7.32000964509802,8.54449594367478,7.82209440865244,5.8814555185976,2.28566849015516,5.67844420737152,0.203678727700633,0,0,0,0.130120442962704,0,0.360124259610698,0.60281927134286,0.204109497453984,0.640568601424249,0.374806898238915,0,0,0.567318240503458,0,0,0.278047249225598,0,0.411564272815887,0,0,0,0,0,0,0,0,0.393528463494808,0,0,0,0,0,0,0.08106880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| ||
|EntrezGene=272381 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=D3YZP3 | |||
|association_with_transcript=-388bp_to_ENSMUST00000127790_5end | |||
|description=CAGE_peak_9_at_Lrrc4b_5end | |||
|id=chr7:51683968..51683999,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.62e-17!23;CL:0000337!1.62e-17!23;CL:0000540!4.11e-17!33;CL:0000047!4.11e-17!33;CL:0000031!4.11e-17!33;CL:0000404!4.11e-17!33;CL:0002319!3.27e-15!43;CL:0000221!1.40e-14!44;CL:0000133!1.40e-14!44;CL:0000393!9.39e-13!39;CL:0000211!9.39e-13!39;CL:0000055!2.25e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.23e-21,23;CL:0000337,2.23e-21,23;CL:0000540,8.03e-14,33;CL:0000047,8.03e-14,33;CL:0000031,8.03e-14,33;CL:0000404,8.03e-14,33;CL:0000393,3.69e-11,39;CL:0000211,3.69e-11,39;CL:0002319,8.41e-10,43;CL:0000221,1.68e-09,44;CL:0000133,1.68e-09,44;CL:0002610,1.39e-07,3;CL:0002608,2.61e-07,3;CL:0002612,3.38e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.98e-42!73;UBERON:0005743!2.98e-42!73;UBERON:0000073!2.03e-40!75;UBERON:0001016!2.03e-40!75;UBERON:0001049!1.77e-36!52;UBERON:0005068!1.77e-36!52;UBERON:0006241!1.77e-36!52;UBERON:0007135!1.77e-36!52;UBERON:0000955!3.49e-35!50;UBERON:0006238!3.49e-35!50;UBERON:0002616!4.64e-34!49;UBERON:0000033!8.13e-33!63;UBERON:0002346!1.46e-32!71;UBERON:0003075!1.46e-32!71;UBERON:0007284!1.46e-32!71;UBERON:0004121!8.74e-32!102;UBERON:0000924!8.74e-32!102;UBERON:0006601!8.74e-32!102;UBERON:0003080!1.19e-29!40;UBERON:0003056!4.10e-29!49;UBERON:0002780!9.98e-29!39;UBERON:0001890!9.98e-29!39;UBERON:0006240!9.98e-29!39;UBERON:0002020!7.31e-28!34;UBERON:0002791!9.27e-24!29;UBERON:0003528!9.27e-24!29;UBERON:0001893!9.27e-24!29;UBERON:0007811!5.49e-19!86;UBERON:0000153!2.86e-18!94;UBERON:0000956!1.60e-17!21;UBERON:0001869!1.60e-17!21;UBERON:0000203!1.60e-17!21;UBERON:0002619!1.12e-14!17;UBERON:0002021!1.75e-10!10;UBERON:0000411!1.75e-10!10;UBERON:0001950!1.75e-10!10;UBERON:0000025!2.21e-08!114;UBERON:0002420!2.43e-07!8;UBERON:0007245!2.43e-07!8;UBERON:0010009!2.43e-07!8;UBERON:0010011!2.43e-07!8;UBERON:0000454!2.43e-07!8;UBERON:0004111!2.68e-07!122;UBERON:0003076!3.55e-07!12;UBERON:0003057!3.55e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.27e-48,54;UBERON:0002020,5.42e-47,34;UBERON:0001049,1.18e-41,52;UBERON:0005068,1.18e-41,52;UBERON:0006241,1.18e-41,52;UBERON:0007135,1.18e-41,52;UBERON:0001017,6.29e-39,73;UBERON:0001016,1.06e-37,75;UBERON:0003528,4.99e-37,29;UBERON:0002791,4.99e-37,29;UBERON:0001893,4.99e-37,29;UBERON:0003080,1.60e-36,40;UBERON:0000955,1.24e-35,47;UBERON:0006238,1.24e-35,47;UBERON:0002780,1.58e-34,39;UBERON:0001890,1.58e-34,39;UBERON:0006240,1.58e-34,39;UBERON:0002616,1.90e-33,46;UBERON:0002346,1.44e-32,64;UBERON:0003075,1.44e-32,64;UBERON:0007284,1.44e-32,64;UBERON:0000956,5.36e-31,21;UBERON:0001869,5.36e-31,21;UBERON:0000203,5.36e-31,21;UBERON:0002619,3.93e-30,17;UBERON:0003056,1.07e-28,49;UBERON:0004121,2.95e-28,95;UBERON:0000924,2.95e-28,95;UBERON:0006601,2.95e-28,95;UBERON:0010371,1.05e-27,73;UBERON:0002021,2.14e-24,10;UBERON:0000411,2.14e-24,10;UBERON:0001950,2.14e-24,10;UBERON:0010314,1.46e-20,92;UBERON:0000025,2.97e-15,114;UBERON:0004111,8.51e-14,122;UBERON:0001948,5.45e-11,5;UBERON:0002315,5.45e-11,5;UBERON:0011216,4.54e-10,194;UBERON:0002240,4.10e-09,6;UBERON:0005174,4.10e-09,6;UBERON:0001137,4.10e-09,6;UBERON:0000369,2.61e-08,5;UBERON:0002435,2.61e-08,5;UBERON:0000204,2.61e-08,5;UBERON:0010082,2.61e-08,5;UBERON:0001954,3.53e-08,7;UBERON:0003022,3.53e-08,7;UBERON:0002421,3.53e-08,7;UBERON:0000349,3.53e-08,7;UBERON:0002600,3.53e-08,7;UBERON:0004684,1.39e-07,3;UBERON:0002275,1.39e-07,3;UBERON:0000483,1.39e-07,174;UBERON:0002420,1.83e-07,8;UBERON:0007245,1.83e-07,8;UBERON:0010009,1.83e-07,8;UBERON:0010011,1.83e-07,8;UBERON:0000454,1.83e-07,8;UBERON:0000119,2.03e-07,176;UBERON:0002257,3.38e-07,3 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.219686182734472,0.194429899074283,0.279972843250725,0,0,0,0,0,0,0,1.01158230429799,0.528990979272033,0.633831403506179,0,0,0,0,0,0.599200221036809,0,0.414758449233911,2.16009501330705,0.630974884054146,2.28520787523043,1.32521124570968,2.08234358665422,2.01275489138296,1.83843757322004,2.20231761998777,3.83062014255563,1.38245879930619,0.923204014111357,3.01909223887952,1.04182674111352,0.558365998002762,0.56276261003168,1.37518422999129,2.06240009831567,1.70846016958924,1.67759501242771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0,0.23517741427141,0,0,0,0,0,0,0,0,1.17112318804619,0.41889341362691,0,0,0,0,2.54644086988199,7.32000964509802,8.54449594367478,7.82209440865244,5.8814555185976,2.28566849015516,5.67844420737152,0.203678727700633,0,0,0,0.130120442962704,0,0.360124259610698,0.60281927134286,0.204109497453984,0.640568601424249,0.374806898238915,0,0,0.567318240503458,0,0,0.278047249225598,0,0.411564272815887,0,0,0,0,0,0,0,0,0.393528463494808,0,0,0,0,0,0,0.0810688095458557,0,0,0,5.46753866266731,2.16099685996497,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0.379335801906163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0.321101179975584,0.937693492737625,0,0.252470927204373,0,0.390438744296638,0.215423397732799,0.238968797952552,0.222798674082394,0,0,0.292255857911312,0.395287777946524,9.3183181762324,0,0.178065603667255,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0.18006109403131,0.258717367565509,0.428674070063185,0.354680467284547,0.178368817602071,0.329098041204242,1.2178597964584,0,0,0,0,0,0.0603129249281559,0,0,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218362563746178,0.134864346384821,0.247960367176008,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.64751842617067,4.60325236507177,4.01026859407578,6.8741272937475,2.74033007908257,5.2877572817279,2.70009000092722,4.95353323546643,6.79713613476307,7.24864436452548,0,0,0.512200817262403,0,0.419226325255965,0.735374033800057,0,0.206035057238894,0.320919209591815,0.252697211763798,0.760437899670719,0,0.280924522409647,0.512201219238954,0.17230640686684,0,0,0.192909220463705,0.412085900803307,0.294397840268795,0.342869252385415,0.177475806159338,0.476872379894642,0.145346416632329,0.0941093804153306,0.423073039458382,0.182927972872773,0.263069711437843,0.135804113845862,0.561142271657738,0.237270036248348,0.0985044823755635,0.409231043169689,0.154936841185966,0.771626443924566,0.749431733813838,0,0.214871054048298,0.191288332068843,0,0 | |||
|short_description=p9@Lrrc4b | |||
}} |
Revision as of 13:35, 14 September 2013
Short description: | p9@Lrrc4b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Lrrc4b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -388bp_to_ENSMUST00000127790_5end |
EntrezGene: | Lrrc4b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.23e-21 | 23 |
neuroblast (sensu Vertebrata) | 2.23e-21 | 23 |
neuron | 8.03e-14 | 33 |
neuronal stem cell | 8.03e-14 | 33 |
neuroblast | 8.03e-14 | 33 |
electrically signaling cell | 8.03e-14 | 33 |
electrically responsive cell | 3.69e-11 | 39 |
electrically active cell | 3.69e-11 | 39 |
neural cell | 8.41e-10 | 43 |
ectodermal cell | 1.68e-09 | 44 |
neurectodermal cell | 1.68e-09 | 44 |
raphe nuclei neuron | 1.39e-07 | 3 |
hippocampal neuron | 2.61e-07 | 3 |
neuron of the ventral spinal cord | 3.38e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.