Personal tools

FF:10059-101H5: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 36: Line 36:
|has_quality=
|has_quality=
|id=FF:10059-101H5
|id=FF:10059-101H5
|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010059
|is_a=EFO:0002091;;FF:0010059
|is_obsolete=
|name=tongue, fetal, donor1
|name=tongue, fetal, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 77: Line 78:
|sample_tissue=tongue
|sample_tissue=tongue
|top_motifs=MEF2{A,B,C,D}:6.47186095528;TBP:4.19155801896;NR6A1:3.7256144065;ZNF384:3.53802479752;HOX{A4,D4}:3.46784429997;FOXL1:3.36227896513;TFAP4:3.33777733567;TAL1_TCF{3,4,12}:3.32870855602;NR1H4:3.21835617946;NR5A1,2:3.18768977158;SOX5:3.15271344177;MYOD1:2.87490965537;IKZF2:2.73581952997;ESR1:2.71440259389;KLF4:2.65009404056;GATA4:2.32602788;NFE2L1:2.27439608659;MYBL2:2.2274092384;SPZ1:2.22656777173;ZIC1..3:2.08387787022;IKZF1:2.08303882847;SRF:2.01214719722;LMO2:1.92520257639;FOXQ1:1.91965534159;TBX4,5:1.85944013488;FOXM1:1.85779094819;GCM1,2:1.83188315853;TFAP2{A,C}:1.82064880258;ESRRA:1.74362521677;NKX2-3_NKX2-5:1.6537765586;RXR{A,B,G}:1.62147500071;NKX2-1,4:1.61657720806;ZNF423:1.60096288755;TGIF1:1.57209422169;SNAI1..3:1.56273605775;NHLH1,2:1.55772798062;GLI1..3:1.55248845753;TFCP2:1.54466917966;MAZ:1.53165227528;SMAD1..7,9:1.51691157444;POU3F1..4:1.50104549977;UFEwm:1.49125126707;HAND1,2:1.46648748781;ALX4:1.37299962984;NKX2-2,8:1.36988115086;MAFB:1.36008203309;ATF2:1.34919350361;GTF2A1,2:1.34501117916;PATZ1:1.25372640655;CDC5L:1.24287576967;RXRA_VDR{dimer}:1.2082460266;CUX2:1.19722463292;HIC1:1.16426739562;RBPJ:1.15681877842;NFIX:1.12641312586;HSF1,2:1.11874864132;TLX1..3_NFIC{dimer}:1.11153025822;PAX6:1.109655828;LHX3,4:1.0856838948;TLX2:1.06488640248;XBP1:1.0626898957;ZNF148:1.04415853114;TEF:1.03832811186;RREB1:1.02920828836;NKX6-1,2:0.986916793725;MED-1{core}:0.985543536521;PAX5:0.968770267715;ZBTB6:0.936892907848;PDX1:0.933917237533;SP1:0.919139634213;CDX1,2,4:0.91844681264;POU1F1:0.917134869592;ZNF238:0.897068785091;MTF1:0.881876388114;NFATC1..3:0.855095180209;TEAD1:0.853921305113;ALX1:0.85290351981;YY1:0.844984524374;ZEB1:0.830192297669;HMX1:0.801388030093;FOXO1,3,4:0.771953790562;FOXP3:0.759522063143;TP53:0.733210275326;NR3C1:0.719572051642;NANOG{mouse}:0.707649782322;GTF2I:0.706514324095;PAX1,9:0.676301116408;ARID5B:0.667935603213;BPTF:0.655360954833;EVI1:0.649153679774;MYFfamily:0.647402198309;NKX3-2:0.634463240952;TOPORS:0.577949246766;PBX1:0.577450481875;PPARG:0.568210786199;AR:0.548295029832;POU6F1:0.547462987886;IRF7:0.54098684326;EGR1..3:0.523095784638;HOX{A6,A7,B6,B7}:0.482040149184;MZF1:0.472160195394;PRDM1:0.460203601167;HES1:0.451414750466;NKX3-1:0.444192205044;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.422351747646;TFAP2B:0.40473232339;SOX{8,9,10}:0.388535779275;FOX{F1,F2,J1}:0.384806759935;ONECUT1,2:0.336749124198;REST:0.306963771266;JUN:0.287037972541;ATF6:0.264474513346;FOXA2:0.255297684464;ZBTB16:0.162140017957;RORA:0.132634098863;LEF1_TCF7_TCF7L1,2:0.110692216319;MTE{core}:0.0890326145294;RFX2..5_RFXANK_RFXAP:0.0555950362321;EP300:0.0471731871375;XCPE1{core}:-0.0616286336691;ZNF143:-0.0649207226608;FOXN1:-0.0811938458964;GFI1:-0.0832013350558;ZFP161:-0.0838829067234;ATF4:-0.0923403371139;AIRE:-0.0925992185142;GFI1B:-0.117466668154;SOX2:-0.130045826951;SOX17:-0.132255259893;FOSL2:-0.136151405768;STAT5{A,B}:-0.141622078332;BREu{core}:-0.150182249874;POU5F1:-0.152918225986;FOXP1:-0.224208528031;HNF4A_NR2F1,2:-0.272128133022;DMAP1_NCOR{1,2}_SMARC:-0.318896868753;ETS1,2:-0.333353123189;SPI1:-0.335347678374;HOX{A5,B5}:-0.343429023642;NANOG:-0.344460483715;PAX3,7:-0.355081617056;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.432734119864;NRF1:-0.436301730595;IRF1,2:-0.443002432141;PAX4:-0.445121931896;NFY{A,B,C}:-0.445411189782;FOX{I1,J2}:-0.457807444973;CREB1:-0.470501913039;PITX1..3:-0.479418207166;HMGA1,2:-0.493136768293;FOS_FOS{B,L1}_JUN{B,D}:-0.502113209322;PAX2:-0.502423930689;HLF:-0.504987823998;SPIB:-0.506691244163;CRX:-0.52305268016;E2F1..5:-0.527054773846;GZF1:-0.529338873007;STAT1,3:-0.571804078098;T:-0.592805747778;ELF1,2,4:-0.595023986972;NFKB1_REL_RELA:-0.624584894024;CEBPA,B_DDIT3:-0.657600746854;FOX{D1,D2}:-0.661961107578;SREBF1,2:-0.670317129321;GATA6:-0.686171797903;NFIL3:-0.708855012116;BACH2:-0.720207586311;ATF5_CREB3:-0.743920934007;HNF1A:-0.765248101901;STAT2,4,6:-0.780080032243;EBF1:-0.789782051267;NFE2:-0.803138266396;HOXA9_MEIS1:-1.0336960291;RFX1:-1.04214380921;FOXD3:-1.05103012813;OCT4_SOX2{dimer}:-1.06612409391;RUNX1..3:-1.15371008136;DBP:-1.15934233475;TFDP1:-1.15941901255;ADNP_IRX_SIX_ZHX:-1.17613678894;EN1,2:-1.20799057549;HIF1A:-1.23287913867;NFE2L2:-1.23458359047;bHLH_family:-1.26579862336;POU2F1..3:-1.37850001347;VSX1,2:-1.41821340189;HBP1_HMGB_SSRP1_UBTF:-1.41909289611;ELK1,4_GABP{A,B1}:-1.5240827322;AHR_ARNT_ARNT2:-1.56809661644;PRRX1,2:-1.61811855934;MYB:-1.72248091771;PAX8:-1.73879167121
|top_motifs=MEF2{A,B,C,D}:6.47186095528;TBP:4.19155801896;NR6A1:3.7256144065;ZNF384:3.53802479752;HOX{A4,D4}:3.46784429997;FOXL1:3.36227896513;TFAP4:3.33777733567;TAL1_TCF{3,4,12}:3.32870855602;NR1H4:3.21835617946;NR5A1,2:3.18768977158;SOX5:3.15271344177;MYOD1:2.87490965537;IKZF2:2.73581952997;ESR1:2.71440259389;KLF4:2.65009404056;GATA4:2.32602788;NFE2L1:2.27439608659;MYBL2:2.2274092384;SPZ1:2.22656777173;ZIC1..3:2.08387787022;IKZF1:2.08303882847;SRF:2.01214719722;LMO2:1.92520257639;FOXQ1:1.91965534159;TBX4,5:1.85944013488;FOXM1:1.85779094819;GCM1,2:1.83188315853;TFAP2{A,C}:1.82064880258;ESRRA:1.74362521677;NKX2-3_NKX2-5:1.6537765586;RXR{A,B,G}:1.62147500071;NKX2-1,4:1.61657720806;ZNF423:1.60096288755;TGIF1:1.57209422169;SNAI1..3:1.56273605775;NHLH1,2:1.55772798062;GLI1..3:1.55248845753;TFCP2:1.54466917966;MAZ:1.53165227528;SMAD1..7,9:1.51691157444;POU3F1..4:1.50104549977;UFEwm:1.49125126707;HAND1,2:1.46648748781;ALX4:1.37299962984;NKX2-2,8:1.36988115086;MAFB:1.36008203309;ATF2:1.34919350361;GTF2A1,2:1.34501117916;PATZ1:1.25372640655;CDC5L:1.24287576967;RXRA_VDR{dimer}:1.2082460266;CUX2:1.19722463292;HIC1:1.16426739562;RBPJ:1.15681877842;NFIX:1.12641312586;HSF1,2:1.11874864132;TLX1..3_NFIC{dimer}:1.11153025822;PAX6:1.109655828;LHX3,4:1.0856838948;TLX2:1.06488640248;XBP1:1.0626898957;ZNF148:1.04415853114;TEF:1.03832811186;RREB1:1.02920828836;NKX6-1,2:0.986916793725;MED-1{core}:0.985543536521;PAX5:0.968770267715;ZBTB6:0.936892907848;PDX1:0.933917237533;SP1:0.919139634213;CDX1,2,4:0.91844681264;POU1F1:0.917134869592;ZNF238:0.897068785091;MTF1:0.881876388114;NFATC1..3:0.855095180209;TEAD1:0.853921305113;ALX1:0.85290351981;YY1:0.844984524374;ZEB1:0.830192297669;HMX1:0.801388030093;FOXO1,3,4:0.771953790562;FOXP3:0.759522063143;TP53:0.733210275326;NR3C1:0.719572051642;NANOG{mouse}:0.707649782322;GTF2I:0.706514324095;PAX1,9:0.676301116408;ARID5B:0.667935603213;BPTF:0.655360954833;EVI1:0.649153679774;MYFfamily:0.647402198309;NKX3-2:0.634463240952;TOPORS:0.577949246766;PBX1:0.577450481875;PPARG:0.568210786199;AR:0.548295029832;POU6F1:0.547462987886;IRF7:0.54098684326;EGR1..3:0.523095784638;HOX{A6,A7,B6,B7}:0.482040149184;MZF1:0.472160195394;PRDM1:0.460203601167;HES1:0.451414750466;NKX3-1:0.444192205044;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.422351747646;TFAP2B:0.40473232339;SOX{8,9,10}:0.388535779275;FOX{F1,F2,J1}:0.384806759935;ONECUT1,2:0.336749124198;REST:0.306963771266;JUN:0.287037972541;ATF6:0.264474513346;FOXA2:0.255297684464;ZBTB16:0.162140017957;RORA:0.132634098863;LEF1_TCF7_TCF7L1,2:0.110692216319;MTE{core}:0.0890326145294;RFX2..5_RFXANK_RFXAP:0.0555950362321;EP300:0.0471731871375;XCPE1{core}:-0.0616286336691;ZNF143:-0.0649207226608;FOXN1:-0.0811938458964;GFI1:-0.0832013350558;ZFP161:-0.0838829067234;ATF4:-0.0923403371139;AIRE:-0.0925992185142;GFI1B:-0.117466668154;SOX2:-0.130045826951;SOX17:-0.132255259893;FOSL2:-0.136151405768;STAT5{A,B}:-0.141622078332;BREu{core}:-0.150182249874;POU5F1:-0.152918225986;FOXP1:-0.224208528031;HNF4A_NR2F1,2:-0.272128133022;DMAP1_NCOR{1,2}_SMARC:-0.318896868753;ETS1,2:-0.333353123189;SPI1:-0.335347678374;HOX{A5,B5}:-0.343429023642;NANOG:-0.344460483715;PAX3,7:-0.355081617056;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.432734119864;NRF1:-0.436301730595;IRF1,2:-0.443002432141;PAX4:-0.445121931896;NFY{A,B,C}:-0.445411189782;FOX{I1,J2}:-0.457807444973;CREB1:-0.470501913039;PITX1..3:-0.479418207166;HMGA1,2:-0.493136768293;FOS_FOS{B,L1}_JUN{B,D}:-0.502113209322;PAX2:-0.502423930689;HLF:-0.504987823998;SPIB:-0.506691244163;CRX:-0.52305268016;E2F1..5:-0.527054773846;GZF1:-0.529338873007;STAT1,3:-0.571804078098;T:-0.592805747778;ELF1,2,4:-0.595023986972;NFKB1_REL_RELA:-0.624584894024;CEBPA,B_DDIT3:-0.657600746854;FOX{D1,D2}:-0.661961107578;SREBF1,2:-0.670317129321;GATA6:-0.686171797903;NFIL3:-0.708855012116;BACH2:-0.720207586311;ATF5_CREB3:-0.743920934007;HNF1A:-0.765248101901;STAT2,4,6:-0.780080032243;EBF1:-0.789782051267;NFE2:-0.803138266396;HOXA9_MEIS1:-1.0336960291;RFX1:-1.04214380921;FOXD3:-1.05103012813;OCT4_SOX2{dimer}:-1.06612409391;RUNX1..3:-1.15371008136;DBP:-1.15934233475;TFDP1:-1.15941901255;ADNP_IRX_SIX_ZHX:-1.17613678894;EN1,2:-1.20799057549;HIF1A:-1.23287913867;NFE2L2:-1.23458359047;bHLH_family:-1.26579862336;POU2F1..3:-1.37850001347;VSX1,2:-1.41821340189;HBP1_HMGB_SSRP1_UBTF:-1.41909289611;ELK1,4_GABP{A,B1}:-1.5240827322;AHR_ARNT_ARNT2:-1.56809661644;PRRX1,2:-1.61811855934;MYB:-1.72248091771;PAX8:-1.73879167121
|xref=
}}
}}

Revision as of 16:14, 27 June 2012


Name:tongue, fetal, donor1
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuetongue
dev stage32 weeks fetus
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberB301061
catalog numberCat:RtHFN: Tongue
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.404
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.121
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0.611
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.393
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.521
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0416
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.452
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0.628
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.24
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0.341
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.00805
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.307
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0441
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.375
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.224
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0762
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0383
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0933
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.226
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0.128
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.375
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0.128
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.128
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.246
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.128
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.375
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.662
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.128
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.182
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.811
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea1.146
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.531
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0.573
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0.226
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0496
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0.531
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11768

Jaspar motifP-value
MA0002.20.00532
MA0003.10.147
MA0004.10.0018
MA0006.10.147
MA0007.10.157
MA0009.10.121
MA0014.10.804
MA0017.10.741
MA0018.20.047
MA0019.10.0998
MA0024.10.0808
MA0025.10.321
MA0027.10.879
MA0028.12.48438e-7
MA0029.10.583
MA0030.10.482
MA0031.10.0857
MA0035.20.0856
MA0038.10.122
MA0039.20.333
MA0040.11
MA0041.10.721
MA0042.10.671
MA0043.10.00136
MA0046.10.00416
MA0047.20.48
MA0048.15.86756e-4
MA0050.17.54576e-5
MA0051.14.56068e-4
MA0052.16.14219e-28
MA0055.10.00207
MA0057.10.469
MA0058.16.62782e-5
MA0059.10.00233
MA0060.10.00162
MA0061.11.57204e-5
MA0062.25.22692e-16
MA0065.20.622
MA0066.10.296
MA0067.10.0637
MA0068.10.0975
MA0069.10.829
MA0070.10.662
MA0071.10.986
MA0072.10.552
MA0073.10.279
MA0074.10.736
MA0076.13.86243e-9
MA0077.10.705
MA0078.10.336
MA0079.20.698
MA0080.22.00174e-8
MA0081.18.11094e-4
MA0083.10.0309
MA0084.10.241
MA0087.10.0568
MA0088.10.0609
MA0090.10.43
MA0091.10.0119
MA0092.10.472
MA0093.10.00129
MA0099.26.36756e-13
MA0100.10.0107
MA0101.16.83668e-5
MA0102.28.26436e-4
MA0103.10.0502
MA0104.23.45625e-5
MA0105.10.00154
MA0106.10.101
MA0107.11.47851e-4
MA0108.29.55581e-19
MA0111.10.436
MA0112.20.00205
MA0113.10.0536
MA0114.10.774
MA0115.10.692
MA0116.10.119
MA0117.10.395
MA0119.10.3
MA0122.10.225
MA0124.10.396
MA0125.10.688
MA0131.10.12
MA0135.10.816
MA0136.18.89097e-12
MA0137.20.056
MA0138.20.194
MA0139.10.0475
MA0140.10.0359
MA0141.10.427
MA0142.10.0143
MA0143.10.319
MA0144.10.196
MA0145.10.0358
MA0146.10.962
MA0147.15.95476e-5
MA0148.10.564
MA0149.10.0987
MA0150.13.08729e-7
MA0152.10.329
MA0153.10.813
MA0154.10.838
MA0155.10.0856
MA0156.11.91348e-15
MA0157.10.0335
MA0159.10.196
MA0160.10.88
MA0162.10.0906
MA0163.10.13
MA0164.10.726
MA0258.10.0236
MA0259.10.0587



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11768

Novel motifP-value
10.804
100.158
1000.358
1010.781
1020.703
1030.661
1040.749
1050.523
1060.354
1070.0193
1080.129
1090.302
110.951
1100.904
1110.649
1120.273
1137.79414e-4
1140.652
1150.0231
1160.146
1170.0896
1180.0782
1190.278
120.763
1200.55
1210.99
1220.0216
1230.0582
1240.0276
1250.624
1260.684
1270.824
1280.371
1290.718
130.913
1300.544
1310.51
1320.0408
1330.147
1340.146
1350.263
1360.663
1370.356
1380.542
1390.513
140.894
1400.387
1410.892
1420.786
1430.0351
1440.875
1450.684
1460.802
1470.00712
1480.366
1490.0304
150.236
1500.833
1510.562
1520.128
1530.327
1540.77
1550.383
1560.561
1570.495
1580.364
1590.616
160.213
1600.439
1610.488
1620.238
1630.159
1640.235
1650.0637
1660.131
1670.143
1680.859
1690.0455
170.98
180.306
190.00933
20.0861
200.0101
210.467
220.231
230.324
240.0648
250.892
260.624
270.855
280.622
290.14
30.637
300.00311
310.403
326.18702e-4
330.787
340.723
350.714
360.0581
370.95
380.861
390.269
40.774
400.406
410.352
420.3
430.479
440.00379
450.0942
460.883
470.52
480.627
490.529
50.573
500.804
510.89
520.193
530.802
540.668
550.326
560.579
570.717
580.938
590.372
60.924
600.223
610.68
620.767
630.39
640.596
650.495
660.0283
670.152
680.178
690.277
70.608
700.938
710.25
720.605
730.569
740.145
750.444
760.0648
770.0466
780.224
790.162
80.915
800.336
810.168
820.539
830.926
840.366
850.00209
860.776
870.137
880.507
890.0317
90.861
900.0966
910.217
920.511
930.883
940.127
950.0953
960.914
970.621
980.955
990.0189



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11768


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001723 (tongue)
0006562 (pharynx)
0000033 (head)
0000926 (mesoderm)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0000077 (mixed endoderm/mesoderm-derived structure)
0004121 (ectoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0005423 (developing anatomical structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0003103 (compound organ)
0005291 (embryonic tissue)
0003102 (surface structure)
0000020 (sense organ)
0000078 (mixed ectoderm/mesoderm/endoderm-derived structure)
0000072 (segment of respiratory tract)
0003104 (mesenchyme)
0001032 (sensory system)
0000925 (endoderm)
0006598 (presumptive structure)
0004185 (endodermal part of digestive tract)
0002532 (epiblast (generic))
0001555 (digestive tract)
0000065 (respiratory tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000924 (ectoderm)
0000165 (mouth)
0007026 (primitive gut)
0001041 (foregut)
0004456 (entire sense organ system)
0000166 (oral opening)
0001557 (upper respiratory tract)
0001033 (gustatory system)
0001042 (chordate pharynx)
0008814 (pharyngeal arch system)
0009142 (entire embryonic mesenchyme)
0000930 (stomodeum)
0006601 (presumptive ectoderm)
0006595 (presumptive endoderm)
0006603 (presumptive mesoderm)
0009145 (pharyngeal region of foregut)
0010056 (future tongue)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10059-101H5&oldid=1839762"