FFCP PHASE1:Mm9::chr9:55174766..55174787,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=244886|HGNC=|MCL_coexpression_id=30|UniProt=Q8BZB3,B1B1B2|association_with_transcript=10bp_to_ENSMUST00000034862,NM_172923,uc009psj.1,uc009psk.1_5end|description=CAGE_peak_1_at_AI118078_5end|id=chr9:55174766..55174787,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000117,1.54e-07,23;CL:0000337,1.54e-07,23;CL:0000192,7.08e-07,3;CL:0000359,7.08e-07,3;CL:0002539,7.08e-07,3;CL:0000514,7.08e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!9.99e-14!71;UBERON:0003075!9.99e-14!71;UBERON:0007284!9.99e-14!71;UBERON:0000033!8.33e-13!63;UBERON:0001049!1.37e-11!52;UBERON:0005068!1.37e-11!52;UBERON:0006241!1.37e-11!52;UBERON:0007135!1.37e-11!52;UBERON:0001017!5.15e-11!73;UBERON:0005743!5.15e-11!73;UBERON:0003056!9.99e-11!49;UBERON:0004121!1.97e-10!102;UBERON:0000924!1.97e-10!102;UBERON:0006601!1.97e-10!102;UBERON:0000073!3.43e-10!75;UBERON:0001016!3.43e-10!75;UBERON:0002020!1.81e-09!34;UBERON:0000955!6.19e-09!50;UBERON:0006238!6.19e-09!50;UBERON:0002616!2.27e-08!49;UBERON:0003080!3.02e-07!40;UBERON:0002780!8.79e-07!39;UBERON:0001890!8.79e-07!39;UBERON:0006240!8.79e-07!39;UBERON:0002791!9.95e-07!29;UBERON:0003528!9.95e-07!29;UBERON:0001893!9.95e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.40e-23,64;UBERON:0003075,2.40e-23,64;UBERON:0007284,2.40e-23,64;UBERON:0010371,6.62e-21,73;UBERON:0001049,7.51e-20,52;UBERON:0005068,7.51e-20,52;UBERON:0006241,7.51e-20,52;UBERON:0007135,7.51e-20,52;UBERON:0000073,2.37e-17,54;UBERON:0004121,1.27e-16,95;UBERON:0000924,1.27e-16,95;UBERON:0006601,1.27e-16,95;UBERON:0010314,6.60e-15,92;UBERON:0001017,1.08e-14,73;UBERON:0003076,1.21e-14,12;UBERON:0003057,1.21e-14,12;UBERON:0001016,4.14e-14,75;UBERON:0000955,4.32e-14,47;UBERON:0006238,4.32e-14,47;UBERON:0003056,2.21e-13,49;UBERON:0002020,2.94e-13,34;UBERON:0002616,7.59e-13,46;UBERON:0002240,5.96e-11,6;UBERON:0005174,5.96e-11,6;UBERON:0001137,5.96e-11,6;UBERON:0002420,3.41e-10,8;UBERON:0007245,3.41e-10,8;UBERON:0010009,3.41e-10,8;UBERON:0010011,3.41e-10,8;UBERON:0000454,3.41e-10,8;UBERON:0001948,1.06e-09,5;UBERON:0002315,1.06e-09,5;UBERON:0004111,3.34e-09,122;UBERON:0003080,3.50e-09,40;UBERON:0000025,1.12e-08,114;UBERON:0002780,2.89e-08,39;UBERON:0001890,2.89e-08,39;UBERON:0006240,2.89e-08,39;UBERON:0000474,4.33e-08,9;UBERON:0002950,1.09e-07,4;UBERON:0001891,1.09e-07,4;UBERON:0009616,1.09e-07,4;UBERON:0010286,1.09e-07,4;UBERON:0003528,1.13e-07,29;UBERON:0002791,1.13e-07,29;UBERON:0001893,1.13e-07,29;UBERON:0003975,4.43e-07,5;UBERON:0001135,7.08e-07,3;UBERON:0004237,7.08e-07,3;UBERON:0004695,7.08e-07,3;UBERON:0002111,7.08e-07,3;UBERON:0004178,7.08e-07,3|phase1_expression=0.320297694209588,0,0,0,0,0.16787927191189,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0.157731082679119,0.137114433605739,0,3.91199134694921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.77690453926732,2.23029248682932,11.5634453861859,0,0,0,0,0.279972843250725,0,0,0,0.336093799142464,0,0,0,0.202316460859598,1.05798195854407,0,0,0,0,0,0,0,0,0,0.270011876663381,0,3.14216082844184,3.75476519617743,0.122490799214954,0.191690942036473,0.919218786610021,0,0.893811366596314,0.153606533256243,1.18697658957174,0.823388792421687,1.56274011167028,4.4669279840221,2.25105044012672,1.06958773443767,2.94628585473668,2.42031857358475,1.3047961207771,0,0,0,0,0,0,0,0,1.26399978118577,0,0,0,1.12674735821344,0,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0,0,0,0.150722640552623,0,0,0,0,0,0,0.220841518460394,0,0,89.5909238855334,87.3392767412108,0,0,0,0.127070227073065,1.79748767285787,2.74500361691176,1.00523481690292,1.04294592115366,0.511430914660661,1.66230435647648,1.29793010454206,0,0.124406970610093,0.252722758433675,5.89237196482127,0.130120442962704,0.229902104433473,0.360124259610698,0.753524089178575,2.10913147369116,5.25266253167884,5.43470002446427,21.4723797713383,0,0,0.175951124163949,0.219195732427575,0.556094498451196,0.348252166522167,0.205782136407943,0,0,0.257347907114715,0.284163499395593,0,0,0,0.23674473558521,0.196764231747404,0.308534225774757,0,0,0,0,0.164167464079095,0.162137619091711,0.146199987425332,0.219550115291051,0.268412837520744,0.420579897128254,0.411618449517138,0,0,0,0,0.128867461322093,0,0.444756087689741,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0.193952487167626,0.0701358198903186,0,0.295220295959204,0,0,0.889357881261447,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0.936113019343682,0,0.179397413521912,0.964887042726734,0,0,0,0,0,0.335012514883631,0,0,0,0,0,0,0,0,0,0,0,0,1.60550589987792,1.99259867206745,0,0.252470927204373,0.631016438832513,0.390438744296638,0.215423397732799,0.238968797952552,0.222798674082394,0,0.809621403349789,0,0,8.03303291054518,5.39372323791421,0,0,4.61916344323099,0,0,0,0,0,0,0.258428293168221,0,0.356497378384721,0.632073515871632,0,0,15.6602218646742,0,0.129358683782755,0.428674070063185,0.532020700926821,0,0,0,2.58138878870081,0.847328283455281,0,0,0.161464426695906,0.0603129249281559,0,0.164140899745061,0,1.1125518120630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| ||
|EntrezGene=244886 | |||
|HGNC= | |||
|MCL_coexpression_id=30 | |||
|UniProt=Q8BZB3,B1B1B2 | |||
|association_with_transcript=10bp_to_ENSMUST00000034862,NM_172923,uc009psj.1,uc009psk.1_5end | |||
|description=CAGE_peak_1_at_AI118078_5end | |||
|id=chr9:55174766..55174787,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.54e-07,23;CL:0000337,1.54e-07,23;CL:0000192,7.08e-07,3;CL:0000359,7.08e-07,3;CL:0002539,7.08e-07,3;CL:0000514,7.08e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!9.99e-14!71;UBERON:0003075!9.99e-14!71;UBERON:0007284!9.99e-14!71;UBERON:0000033!8.33e-13!63;UBERON:0001049!1.37e-11!52;UBERON:0005068!1.37e-11!52;UBERON:0006241!1.37e-11!52;UBERON:0007135!1.37e-11!52;UBERON:0001017!5.15e-11!73;UBERON:0005743!5.15e-11!73;UBERON:0003056!9.99e-11!49;UBERON:0004121!1.97e-10!102;UBERON:0000924!1.97e-10!102;UBERON:0006601!1.97e-10!102;UBERON:0000073!3.43e-10!75;UBERON:0001016!3.43e-10!75;UBERON:0002020!1.81e-09!34;UBERON:0000955!6.19e-09!50;UBERON:0006238!6.19e-09!50;UBERON:0002616!2.27e-08!49;UBERON:0003080!3.02e-07!40;UBERON:0002780!8.79e-07!39;UBERON:0001890!8.79e-07!39;UBERON:0006240!8.79e-07!39;UBERON:0002791!9.95e-07!29;UBERON:0003528!9.95e-07!29;UBERON:0001893!9.95e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.40e-23,64;UBERON:0003075,2.40e-23,64;UBERON:0007284,2.40e-23,64;UBERON:0010371,6.62e-21,73;UBERON:0001049,7.51e-20,52;UBERON:0005068,7.51e-20,52;UBERON:0006241,7.51e-20,52;UBERON:0007135,7.51e-20,52;UBERON:0000073,2.37e-17,54;UBERON:0004121,1.27e-16,95;UBERON:0000924,1.27e-16,95;UBERON:0006601,1.27e-16,95;UBERON:0010314,6.60e-15,92;UBERON:0001017,1.08e-14,73;UBERON:0003076,1.21e-14,12;UBERON:0003057,1.21e-14,12;UBERON:0001016,4.14e-14,75;UBERON:0000955,4.32e-14,47;UBERON:0006238,4.32e-14,47;UBERON:0003056,2.21e-13,49;UBERON:0002020,2.94e-13,34;UBERON:0002616,7.59e-13,46;UBERON:0002240,5.96e-11,6;UBERON:0005174,5.96e-11,6;UBERON:0001137,5.96e-11,6;UBERON:0002420,3.41e-10,8;UBERON:0007245,3.41e-10,8;UBERON:0010009,3.41e-10,8;UBERON:0010011,3.41e-10,8;UBERON:0000454,3.41e-10,8;UBERON:0001948,1.06e-09,5;UBERON:0002315,1.06e-09,5;UBERON:0004111,3.34e-09,122;UBERON:0003080,3.50e-09,40;UBERON:0000025,1.12e-08,114;UBERON:0002780,2.89e-08,39;UBERON:0001890,2.89e-08,39;UBERON:0006240,2.89e-08,39;UBERON:0000474,4.33e-08,9;UBERON:0002950,1.09e-07,4;UBERON:0001891,1.09e-07,4;UBERON:0009616,1.09e-07,4;UBERON:0010286,1.09e-07,4;UBERON:0003528,1.13e-07,29;UBERON:0002791,1.13e-07,29;UBERON:0001893,1.13e-07,29;UBERON:0003975,4.43e-07,5;UBERON:0001135,7.08e-07,3;UBERON:0004237,7.08e-07,3;UBERON:0004695,7.08e-07,3;UBERON:0002111,7.08e-07,3;UBERON:0004178,7.08e-07,3 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0.16787927191189,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0.157731082679119,0.137114433605739,0,3.91199134694921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.77690453926732,2.23029248682932,11.5634453861859,0,0,0,0,0.279972843250725,0,0,0,0.336093799142464,0,0,0,0.202316460859598,1.05798195854407,0,0,0,0,0,0,0,0,0,0.270011876663381,0,3.14216082844184,3.75476519617743,0.122490799214954,0.191690942036473,0.919218786610021,0,0.893811366596314,0.153606533256243,1.18697658957174,0.823388792421687,1.56274011167028,4.4669279840221,2.25105044012672,1.06958773443767,2.94628585473668,2.42031857358475,1.3047961207771,0,0,0,0,0,0,0,0,1.26399978118577,0,0,0,1.12674735821344,0,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0,0,0,0.150722640552623,0,0,0,0,0,0,0.220841518460394,0,0,89.5909238855334,87.3392767412108,0,0,0,0.127070227073065,1.79748767285787,2.74500361691176,1.00523481690292,1.04294592115366,0.511430914660661,1.66230435647648,1.29793010454206,0,0.124406970610093,0.252722758433675,5.89237196482127,0.130120442962704,0.229902104433473,0.360124259610698,0.753524089178575,2.10913147369116,5.25266253167884,5.43470002446427,21.4723797713383,0,0,0.175951124163949,0.219195732427575,0.556094498451196,0.348252166522167,0.205782136407943,0,0,0.257347907114715,0.284163499395593,0,0,0,0.23674473558521,0.196764231747404,0.308534225774757,0,0,0,0,0.164167464079095,0.162137619091711,0.146199987425332,0.219550115291051,0.268412837520744,0.420579897128254,0.411618449517138,0,0,0,0,0.128867461322093,0,0.444756087689741,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0.193952487167626,0.0701358198903186,0,0.295220295959204,0,0,0.889357881261447,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0.936113019343682,0,0.179397413521912,0.964887042726734,0,0,0,0,0,0.335012514883631,0,0,0,0,0,0,0,0,0,0,0,0,1.60550589987792,1.99259867206745,0,0.252470927204373,0.631016438832513,0.390438744296638,0.215423397732799,0.238968797952552,0.222798674082394,0,0.809621403349789,0,0,8.03303291054518,5.39372323791421,0,0,4.61916344323099,0,0,0,0,0,0,0.258428293168221,0,0.356497378384721,0.632073515871632,0,0,15.6602218646742,0,0.129358683782755,0.428674070063185,0.532020700926821,0,0,0,2.58138878870081,0.847328283455281,0,0,0.161464426695906,0.0603129249281559,0,0.164140899745061,0,1.11255181206306,0,0,0,0,0.136694227721025,0,0.509935289981566,1.53946597556024,1.65839968565309,0,0.158167996790568,0.609958401380546,0.108005340821801,0,0.436725127492355,0,0.165306911450672,0,0,0,0,0,0.165458490457098,0.388902376688095,0,0,0.117357238645754,0.13020438484395,0.419437377702843,0.483168241652012,0.864090018773596,0,0.202725215290164,0,0.129920822977795,0,0,0,0.147689527174577,0,0,0,0.0974578807397524,0,0,0.226730383615211,0.443971906748129,0.269141569828427,0.335769232728157,0.579568782096571,21.0204372505324,10.9890974560359,3.42989406526505,0,1.12950368523413,3.68260189205742,1.14579102687879,2.40594455281163,2.74033007908257,0,0.675022500231806,0,0.906284817968409,0.51776031175182,0.103787347584177,0.798049746802062,0.170733605754134,0.729320151204882,0,0.551530525350042,0.222246727801615,0.412070114477788,0.320919209591815,0.758091635291392,0.760437899670719,0.754505365544305,0.37456602987953,0.256100609619477,0.631790158511746,0.952587382566147,0.463537303779422,0.578727661391115,0.824171801606613,0.883193520806384,0,0.354951612318675,0.238436189947321,0.145346416632329,0.470546902076653,0.169229215783353,0.365855945745545,0.263069711437843,0.543216455383447,0.561142271657738,0.237270036248348,0.492522411877817,0,0.154936841185966,0,0.999242311751784,0.233931608445408,0.429742108096597,0,0.661774257358546,0.231867835620421 | |||
|short_description=p1@AI118078 | |||
}} |
Revision as of 18:15, 14 September 2013
Short description: | p1@AI118078 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_AI118078_5end |
Coexpression cluster: | MCL_coexpression_mm9:30 |
Association with transcript: | 10bp_to_ENSMUST00000034862, NM_172923, uc009psj.1, uc009psk.1_5end |
EntrezGene: | AI118078 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.54e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.54e-07 | 23 |
smooth muscle cell | 7.08e-07 | 3 |
vascular associated smooth muscle cell | 7.08e-07 | 3 |
aortic smooth muscle cell | 7.08e-07 | 3 |
smooth muscle myoblast | 7.08e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.