FFCP PHASE1:Hg19::chr5:14441157..14441216,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7204 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12303 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=229bp_to_ENST00000515710,uc003jfi.1_5end | |||
|coexpression_cluster_id=C950 | |||
|description=CAGE_peak_3_at_TRIO_5end | |||
|id=chr5:14441157..14441216,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.72e-22!180;CL:0000057!1.97e-15!75;CL:0000183!1.26e-14!59;CL:0000680!1.90e-14!57;CL:0000056!1.90e-14!57;CL:0000355!1.90e-14!57;CL:0000187!5.96e-13!54;CL:0000393!1.64e-11!60;CL:0000211!1.64e-11!60;CL:0000192!1.98e-09!42;CL:0000514!1.98e-09!42;CL:0000359!2.07e-07!32;CL:0002620!3.27e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000187;3.93e-08;55!CL:0002620;4.29e-08;23!CL:0000359;9.29e-08;32!CL:0000192;3.66e-07;43!CL:0000188;6.82e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,6.37e-15,58;CL:0000056,6.37e-15,58;CL:0000355,6.37e-15,58;CL:0000057,1.02e-13,76;CL:0000187,2.88e-13,55;CL:0000393,3.02e-11,61;CL:0000211,3.02e-11,61;CL:0000192,1.13e-09,43;CL:0000514,1.13e-09,43;CL:0002620,3.68e-08,23;CL:0000359,1.11e-07,32;CL:0000188,7.08e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000355;7.01e-09;58!CL:0000514;3.66e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.38e-26!365;UBERON:0000073!1.49e-21!94;UBERON:0001016!1.49e-21!94;UBERON:0005743!9.37e-21!86;UBERON:0003075!1.90e-20!86;UBERON:0007284!1.90e-20!86;UBERON:0001017!2.68e-20!82;UBERON:0002346!4.70e-20!90;UBERON:0000119!1.76e-19!312;UBERON:0000955!2.63e-19!69;UBERON:0006238!2.63e-19!69;UBERON:0002616!3.28e-19!59;UBERON:0000153!1.03e-18!129;UBERON:0007811!1.03e-18!129;UBERON:0000914!1.70e-18!83;UBERON:0002329!1.70e-18!83;UBERON:0003077!1.70e-18!83;UBERON:0003059!1.70e-18!83;UBERON:0007282!1.70e-18!83;UBERON:0009618!1.70e-18!83;UBERON:0007285!1.70e-18!83;UBERON:0004290!1.92e-18!70;UBERON:0000033!2.29e-18!123;UBERON:0007023!3.11e-18!115;UBERON:0000483!3.28e-18!309;UBERON:0000481!3.40e-18!347;UBERON:0001049!2.00e-17!57;UBERON:0005068!2.00e-17!57;UBERON:0006241!2.00e-17!57;UBERON:0007135!2.00e-17!57;UBERON:0004121!3.63e-17!169;UBERON:0000924!3.89e-17!173;UBERON:0006601!3.89e-17!173;UBERON:0003056!9.62e-17!61;UBERON:0002385!4.43e-16!63;UBERON:0001015!4.43e-16!63;UBERON:0000383!4.43e-16!63;UBERON:0001134!9.67e-16!61;UBERON:0002036!9.67e-16!61;UBERON:0003082!9.67e-16!61;UBERON:0002780!2.49e-15!41;UBERON:0001890!2.49e-15!41;UBERON:0006240!2.49e-15!41;UBERON:0003080!2.54e-15!42;UBERON:0001893!5.91e-15!34;UBERON:0001869!1.25e-14!32;UBERON:0002791!2.11e-14!33;UBERON:0002619!2.30e-14!22;UBERON:0002020!2.68e-14!34;UBERON:0003528!2.68e-14!34;UBERON:0000486!7.00e-14!82;UBERON:0000468!8.05e-14!659;UBERON:0000477!1.11e-13!286;UBERON:0000956!1.19e-13!25;UBERON:0000203!1.19e-13!25;UBERON:0001950!1.46e-13!20;UBERON:0000025!5.43e-12!194;UBERON:0000467!7.28e-12!625;UBERON:0000480!1.12e-11!626;UBERON:0004111!1.06e-10!241;UBERON:0005256!4.60e-10!143;UBERON:0000479!3.03e-09!787;UBERON:0000922!3.41e-09!612;UBERON:0002050!4.35e-09!605;UBERON:0005423!4.35e-09!605;UBERON:0000923!7.98e-09!604;UBERON:0005291!7.98e-09!604;UBERON:0006598!7.98e-09!604;UBERON:0002532!7.98e-09!604;UBERON:0002049!4.67e-08!79;UBERON:0007798!4.67e-08!79;UBERON:0001013!6.07e-07!14;UBERON:0000064!7.15e-07!219;UBERON:0004872!7.53e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.87e-16;22!UBERON:0001950;2.53e-15;20!UBERON:0002385;3.13e-14;31!UBERON:0001015;3.13e-14;31!UBERON:0000383;3.13e-14;31!UBERON:0000956;5.08e-14;25!UBERON:0000203;5.08e-14;25!UBERON:0001869;5.00e-13;32!UBERON:0001893;9.67e-13;34!UBERON:0002791;2.07e-12;32!UBERON:0003528;3.45e-12;34!UBERON:0002020;3.45e-12;34!UBERON:0002780;3.40e-11;41!UBERON:0001890;3.40e-11;41!UBERON:0000073;3.30e-10;53!UBERON:0002616;3.30e-10;53!UBERON:0001134;4.72e-10;16!UBERON:0002036;4.72e-10;16!UBERON:0001017;6.25e-10;75!UBERON:0000955;1.36e-08;68!UBERON:0001016;7.19e-08;83!UBERON:0001013;1.96e-07;14!UBERON:0006876;4.36e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.80e-24,132;UBERON:0007524,1.98e-20,73;UBERON:0003077,4.87e-20,72;UBERON:0007285,4.87e-20,72;UBERON:0001017,6.79e-20,81;UBERON:0003075,8.16e-20,82;UBERON:0007284,8.16e-20,82;UBERON:0002329,1.49e-19,71;UBERON:0003059,1.49e-19,71;UBERON:0007282,1.49e-19,71;UBERON:0004290,1.49e-19,71;UBERON:0009618,1.49e-19,71;UBERON:0000955,2.68e-19,68;UBERON:0006238,2.68e-19,68;UBERON:0001016,3.22e-19,89;UBERON:0000119,1.90e-18,309;UBERON:0002346,2.03e-18,86;UBERON:0007503,7.55e-18,78;UBERON:0001049,1.73e-17,56;UBERON:0005068,1.73e-17,56;UBERON:0006241,1.73e-17,56;UBERON:0007135,1.73e-17,56;UBERON:0000483,4.05e-17,306;UBERON:0002385,9.03e-17,64;UBERON:0001015,9.03e-17,64;UBERON:0000383,9.03e-17,64;UBERON:0007023,9.15e-17,114;UBERON:0000073,1.71e-16,53;UBERON:0002616,1.71e-16,53;UBERON:0001134,2.24e-16,62;UBERON:0002036,2.24e-16,62;UBERON:0003082,2.24e-16,62;UBERON:0002619,3.21e-16,22;UBERON:0001950,2.67e-15,20;UBERON:0000486,3.17e-15,83;UBERON:0010371,6.28e-15,104;UBERON:0001893,7.02e-15,34;UBERON:0002780,7.91e-15,41;UBERON:0001890,7.91e-15,41;UBERON:0003080,7.91e-15,41;UBERON:0006240,7.91e-15,41;UBERON:0003056,9.23e-15,61;UBERON:0001869,1.78e-14,32;UBERON:0003528,3.53e-14,34;UBERON:0002020,3.53e-14,34;UBERON:0004121,3.97e-14,171;UBERON:0000924,3.97e-14,171;UBERON:0006601,3.97e-14,171;UBERON:0000956,5.87e-14,25;UBERON:0000203,5.87e-14,25;UBERON:0002791,6.36e-14,32;UBERON:0000479,1.61e-12,773;UBERON:0000923,3.48e-11,560;UBERON:0010316,3.48e-11,560;UBERON:0005291,3.48e-11,560;UBERON:0006598,3.48e-11,560;UBERON:0010317,3.48e-11,560;UBERON:0002532,3.48e-11,560;UBERON:0002050,4.61e-11,564;UBERON:0005256,4.62e-11,122;UBERON:0000025,3.43e-10,192;UBERON:0005423,3.38e-09,581;UBERON:0000922,1.18e-08,592;UBERON:0004111,2.64e-08,240;UBERON:0003104,5.66e-08,160;UBERON:0009142,5.66e-08,160;UBERON:0001013,9.99e-08,14;UBERON:0011216,1.04e-07,223;UBERON:0006876,4.37e-07,11;UBERON:0002199,4.47e-07,46;UBERON:0002416,4.47e-07,46 | |||
|phase1_expression=7.81217030863394,5.78071414505655,3.52386010239928,3.00219895059391,3.12872766099101,1.74467704820074,7.59899634504932,15.7929968356708,3.91778442299758,1.96587149201207,0,0.655324116390517,0,0.990130823680373,0.331397375727916,4.70627602516243,5.42425075221579,1.46062018077475,2.43966399395253,5.29420549730188,5.71201935483908,2.82109249330279,1.43117993565528,0.958120975510189,0.502170558379211,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,1.66221330396589,0,0,0.579386075843295,0,0.973269740605272,5.57755421268,7.31707011626461,7.64162635530197,4.51877810467109,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0.596287222100115,2.58070378531837,0,0.56530794192401,0.838998872419812,0,0,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0.267899184852239,0,0.450445921933289,0,0,0.732806975721629,0,0,0.436094052142534,1.98788780678127,2.65924074495618,6.88527740228738,20.078563452417,7.09336764396714,1.68203280042692,6.4049397437823,0.24666754841716,6.84664277879486,1.34710672069688,4.57693328717684,48.585734274023,39.7561387891199,3.28050004567315,16.8566441488373,5.13424639390004,10.4614076386261,5.98915943083201,5.82742599725274,7.16299114181467,2.24569588380383,4.66770405784718,1.23990937410919,2.37600571456411,0.741800787835671,29.1251635820168,5.03032699271367,4.71341119071385,4.75450375513464,0.554128230968366,2.63386572528503,0.30648779579902,4.05642759047811,1.36118619792025,4.84352016359927,1.70845911054854,4.02670612203168,7.80236849819446,2.88547081867629,1.54584324027377,1.11670113798954,11.6455669246474,1.46155507741798,9.08761587278812,2.39329736469978,11.6385160909545,6.03516307278244,2.31729825923573,1.86516651541536,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,3.21620469096443,12.4321429217232,1.39310378409594,3.60939740834793,0,0,0.241011029883482,0.110293972732394,0,0.237270619111097,0,0,0,0,7.01208869017229,11.1124983059478,8.82052268313252,0,0,0,0,0,2.57351715447788,0,0,0,0.740707561268237,0.651616610620649,1.03993478527958,1.44331342025273,2.89826012437692,2.93521735589554,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0,0,0,0.383382679165211,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,23.8839209655618,13.5147621338317,12.8342000186663,3.87815147273333,21.4593867511129,5.917119267892,2.39344304926383,0,1.80045161983499,2.83698264046557,4.79559922228979,11.0093055116774,5.96883765930587,0.823240336780769,7.49193223875591,6.39705507736582,2.37585561880029,1.20575750823834,0,2.89921674427965,0,0,0,0,0,9.98458335285029,14.1885680534228,8.83548186966649,12.5342674267927,0,0,0,0,19.3111914409072,2.60279707715243,0.773288812777695,6.70065061337395,0.637938751653163,0,0,0,0.858840442033979,0.500170521059677,1.62759014219841,1.87173775377726,1.24900292158013,1.57702415033935,3.39710103478868,2.40756879782175,0,2.0694614258501,0.664225598535437,2.76553752812555,3.12781012085098,41.509845382101,28.8240476001119,0,0,0,0,0,0,3.47350930946288,4.14347327877769,0.841980283299221,1.79394808957981,1.53512174720011,0.804269605718038,2.96836132889982,13.878872442239,28.0547525994741,30.8798106611922,23.8857037424466,20.1043954735729,0,0,0,0.918515585316854,1.63882051206045,1.31124414959424,0.451199612907412,0.0770153371044148,0.784349769176855,0,0.105551628892876,0,2.89159298970077,0.431831832204279,0,3.52230368807009,1.00337954770971,0.254876273045038,0,0.223874754722178,0,0,0.256450125116389,1.96808787419823,0.650756789328606,0.309123034943167,0,0,2.29706215198469,1.95018073810956,1.6068392984416,17.5940707291662,10.9374518151398,10.1312425319246,10.1999063638553,10.9568649765639,6.67076792005451,13.4658071317439,7.21159488738573,0,0,0.510450849978337,0,2.78907329578371,12.5924938732256,8.3644472419272,2.46426864140871,3.72614221221915,13.9189278732012,0.55597265731176,1.28812398067792,13.0255429275884,8.22586504268687,4.38449446024797,2.303080121802,2.1396949401696,41.3664222303718,0,5.75591864266607,3.29444435683266,5.53718291024726,4.85237955775958,4.75530963519025,3.79132610615083,5.85160486907508,4.14312932373184,1.05650146756755,2.18399858252777,1.83827061539827,13.5609739944291,18.7464216805682,1.32687795048244,0,9.83918408253369,1.31178950409327,1.42037263873893,2.16876448669825,3.66204283291914,2.15117028306077,0.294747123039363,1.07001315444375,0.709522128141196,3.16661452946496,14.1596803972758,8.72788299661145,4.89908608342976,0.0962221127255121,0,0,0.376575203107117,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.93016358543788,0,0,0,0,0,0,13.9180670687282,10.690875647199,0,0,0,3.58646378851925,2.21027132424918,0,0.20453736500431,0,0,0,0,0,2.56472854656027,0,0,10.6626602070474,10.6683312886129,17.9652418201075,0,0,1.44999915086959,0,0,0,0,0.583209226766509,15.2789995541297,0.885741385813839,2.41192877250816,0,1.21637185924347,1.47773809476774,9.65295747477479,0,0,2.38545801361771,0,0,0,0,0,3.02272058226146,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,1.76915129006678,1.22206028986725,0,0,0,4.31367251076333,11.236087062183,1.63985112007737,0,0,0,3.15667522279512,2.41981432097328,24.1797481688087,11.1840245942424,0.751617097072463,0,0,0,0,0,0,0,0,0,0,5.2418000472609,0,0,0,0,2.32773639572207,77.1358547283712,8.3612874088797,0,0,13.6118211305139,0,0,17.7165985633663,0,0,0,0.514784993585894,0,0.124252535565433,0,8.83377339478491,8.78663909023599,0,2.31160471921215,1.80126086612937,2.0535806833799,0,0.429765441419957,0,7.26134243307861,3.89572720819862,3.58936512288407,0.399358000997982,1.71690419254628,1.78537165953498,6.9198976661328,0.360299883542404,0,0,0,0,0,0,9.54275627771164,5.17572943223987,0,0,0,0,0,13.7901493613716,0,0.472834243795189,8.13046116092471,0,0,0,2.1440859791201,1.32418394073086,0,3.25799761052228,0,2.28611152076586,0,0,227.127233039967,0.113312091520126,0.146552233678082,0,2.32709321450791,2.24795422962573,0,0,0.213574825135389,2.98688179689365,0,0,0,0,0,1.08803560673895,0.7520696820681,0.919036730290385,0.655745261419609,0,17.7213635993397,12.2026264901963,12.8946658627695,3.44045517414043,1.44207766997908,4.16045899707269,0,0,0,0,0,0,0.434763085832475,16.2687735146693,3.97312626740282,14.4249523990679,1.32582103692562,3.0188148210309,11.567545880755,3.66144109435078,16.7866325377195,21.916645282172,8.2798883994195,4.93819978207477,10.7952746919265,17.0789252563885,16.1735421057934,2.92425886013794,6.26094074174081,0.751288044986092,0.380805212168795,5.69619026486526,19.6396551938764,3.00749559718968,23.2016879939247,13.5352602157529,1.60011105865261,5.15093557774189,7.74523824161614,2.52369796457302,0,1.07220795687463,0.260994291965212,0,0.231522474323834,0.244736704506468,0.71635536432595,0.617602894321944,0.657852148736121,0,1.15748422962549,0.675769762612291,0,1.0362910251936,0,9.26331522216596,0,0,0,0,0,0,0,0,0,0,8.83708561208836,0,0,0.127894371303652,47.6585666373334,0,23.0432336585149,2.20652288940233,0.212574920101683,0.123935764259002,0.558644917973244,0.636008701306837,0,0,4.93746321166957,0,9.63438376446893,15.5866233958143,7.18352365757181,13.1274473114083,22.6864526599546,16.6668978438765,7.589355344697,8.56616521554926,0,0,0,0,0,0,0.795664888465099,3.91093707416138,0,1.56302802246618,0,0,0,12.156765231311,8.59185908475232,13.2279549760758,13.6978150018839,16.4092442705466,0.548257766857182,5.95453414067153,0.175871244359621,0,2.67850917939143,1.00885116665647,2.42786241694653,2.50428410486427,0.443511850813194,0,0,3.80630504670258,15.9170112022095,0,0,2.43328587836593,1.57115589916002,0,10.0447459256045,0,0,14.9385977329212,0.158013611732727,0,15.1256696903244,1.60342272946051,0.828864656652147,0,0,0.860454717640555,0.946656005844523,1.53384128566484,1.69354820076372,0,0,0,0,0,0,2.58971534875158,1.53994210284371,13.9177731760584,6.79995390282795,0,4.77481860387284,0,0,0,0,1.23478652972711,1.5299169235277,0,4.90296643507811,0,2.94462700672418,2.0793248022896,13.1023275550854,0.849635573439084,6.01497075071063,13.7939880263455,0,0,0,0,3.65168194123259,1.37618785021362,1.86341458096887,0.157771562193185,13.6662895283739,16.5813262329343,3.7031878836078,0.743990036333503,1.84870251452567,7.7872781182282,0,0,0,0,0,0,0,5.75918106458619,4.01946195234268,0.829169439458779,2.48239190068549,7.67642334843531,11.903221573187,2.51896748360424,2.54506328613017,0,0.827413057616144,4.24446096812261,3.9189014621453,2.05339980651169,1.68380132536469,1.43444410785353,9.31448998328838,0,0,0,0,0,5.25638209986326,7.32413120968329,0.665756774185513,6.64203518850387,0 | |||
|short_description=p3@TRIO | |||
}} |
Revision as of 04:44, 22 January 2014
Short description: | p3@TRIO |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TRIO_5end |
Coexpression cluster: | C950_liposarcoma_extraskeletal_Fibroblast_Smooth_Preadipocyte_neuroblastoma_mesenchymal |
Association with transcript: | 229bp_to_ENST00000515710, uc003jfi.1_5end |
EntrezGene: | TRIO |
HGNC: | 12303 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 6.37e-15 | 58 |
myoblast | 6.37e-15 | 58 |
multi-potent skeletal muscle stem cell | 6.37e-15 | 58 |
fibroblast | 1.02e-13 | 76 |
muscle cell | 2.88e-13 | 55 |
electrically responsive cell | 3.02e-11 | 61 |
electrically active cell | 3.02e-11 | 61 |
smooth muscle cell | 1.13e-09 | 43 |
smooth muscle myoblast | 1.13e-09 | 43 |
skin fibroblast | 3.68e-08 | 23 |
vascular associated smooth muscle cell | 1.11e-07 | 32 |
cell of skeletal muscle | 7.08e-07 | 9 |