FFCP PHASE1:Hg19::chr2:55253261..55253280,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:55253261..55253280,-
|short_description=p35@RTN4
|description=CAGE_peak_35_at_RTN4_5end
|association_with_transcript=-57bp_to_AB073351_5end
|EntrezGene=57...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57142 | |EntrezGene=57142 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=14085 | |HGNC=14085 | ||
|TSSclassifier=strong | |||
|UniProt=Q3LIF4 | |UniProt=Q3LIF4 | ||
|association_with_transcript=-57bp_to_AB073351_5end | |||
|cluster_id=chr2:55253261..55253280,- | |||
|description=CAGE_peak_35_at_RTN4_5end | |||
|id=chr2:55253261..55253280,- | |||
|ontology_enrichment_celltype=CL:0000047!4.21e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000775;8.57e-13;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000775,6.20e-13,3 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.07e-26;3!UBERON:0003057;1.07e-26;3!UBERON:0006222;6.05e-10;1!UBERON:0005425;6.05e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.48e-43!57;UBERON:0005068!1.48e-43!57;UBERON:0006241!1.48e-43!57;UBERON:0007135!1.48e-43!57;UBERON:0001017!6.12e-41!82;UBERON:0005743!8.51e-40!86;UBERON:0000073!2.80e-36!94;UBERON:0001016!2.80e-36!94;UBERON:0002616!1.46e-34!59;UBERON:0002780!6.74e-33!41;UBERON:0001890!6.74e-33!41;UBERON:0006240!6.74e-33!41;UBERON:0003080!7.06e-32!42;UBERON:0000955!1.05e-30!69;UBERON:0006238!1.05e-30!69;UBERON:0007023!1.40e-30!115;UBERON:0002020!2.66e-30!34;UBERON:0003528!2.66e-30!34;UBERON:0001893!2.79e-30!34;UBERON:0003075!9.29e-30!86;UBERON:0007284!9.29e-30!86;UBERON:0002346!4.23e-29!90;UBERON:0002791!6.05e-29!33;UBERON:0001869!1.81e-27!32;UBERON:0002619!4.55e-22!22;UBERON:0001950!5.41e-22!20;UBERON:0003056!1.33e-21!61;UBERON:0000956!8.33e-21!25;UBERON:0000203!8.33e-21!25;UBERON:0000153!3.01e-15!129;UBERON:0007811!3.01e-15!129;UBERON:0000033!4.75e-15!123;UBERON:0000924!1.08e-14!173;UBERON:0006601!1.08e-14!173;UBERON:0004121!1.09e-14!169;UBERON:0003076!1.66e-12!15;UBERON:0003057!1.66e-12!15;UBERON:0000025!1.89e-11!194;UBERON:0002420!2.16e-11!9;UBERON:0007245!2.16e-11!9;UBERON:0010009!2.16e-11!9;UBERON:0010011!2.16e-11!9;UBERON:0000454!2.16e-11!9;UBERON:0002308!4.53e-11!9;UBERON:0000125!4.53e-11!9;UBERON:0000200!3.79e-10!6;UBERON:0004732!1.34e-09!13;UBERON:0004111!9.54e-09!241;UBERON:0002021!1.64e-08!5;UBERON:0009663!2.08e-08!7;UBERON:0004733!3.18e-08!12;UBERON:0002028!3.18e-08!12;UBERON:0007277!3.18e-08!12;UBERON:0000119!3.32e-08!312;UBERON:0000483!4.96e-08!309;UBERON:0001871!1.39e-07!7;UBERON:0002298!1.82e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002240;1.07e-26;3!UBERON:0005174;1.07e-26;3!UBERON:0001137;1.07e-26;3!UBERON:0002021;2.79e-16;5!UBERON:0001016;6.02e-16;83!UBERON:0002780;9.52e-12;41!UBERON:0001890;9.52e-12;41!UBERON:0000073;1.90e-11;53!UBERON:0002616;1.90e-11;53!UBERON:0002791;5.08e-11;32!UBERON:0001950;3.40e-10;20!UBERON:0001017;5.41e-10;75!UBERON:0002038;6.05e-10;1!UBERON:0000941;6.05e-10;1!UBERON:0001785;6.05e-10;1!UBERON:0002464;6.05e-10;1!UBERON:0004904;6.05e-10;1!UBERON:0001021;6.05e-10;1!UBERON:0009661;6.05e-10;1!UBERON:0002950;6.05e-10;1!UBERON:0001891;6.05e-10;1!UBERON:0002619;2.70e-09;22!UBERON:0001893;4.14e-09;34!UBERON:0001869;1.66e-08;32!UBERON:0000956;3.34e-08;25!UBERON:0000203;3.34e-08;25!UBERON:0003528;3.66e-08;34!UBERON:0002020;3.66e-08;34!UBERON:0000955;4.66e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.52e-27,56;UBERON:0005068,3.52e-27,56;UBERON:0006241,3.52e-27,56;UBERON:0007135,3.52e-27,56;UBERON:0002240,6.61e-27,3;UBERON:0005174,6.61e-27,3;UBERON:0001137,6.61e-27,3;UBERON:0001016,3.29e-24,89;UBERON:0001017,7.44e-24,81;UBERON:0003075,9.15e-21,82;UBERON:0007284,9.15e-21,82;UBERON:0002346,1.08e-19,86;UBERON:0000073,1.96e-17,53;UBERON:0002616,1.96e-17,53;UBERON:0002021,3.73e-16,5;UBERON:0010371,6.97e-16,104;UBERON:0000955,1.07e-15,68;UBERON:0006238,1.07e-15,68;UBERON:0002780,2.79e-15,41;UBERON:0001890,2.79e-15,41;UBERON:0003080,2.79e-15,41;UBERON:0006240,2.79e-15,41;UBERON:0003076,2.29e-14,15;UBERON:0003057,2.29e-14,15;UBERON:0007023,1.58e-12,114;UBERON:0003056,2.53e-12,61;UBERON:0002791,5.16e-12,32;UBERON:0010314,5.33e-12,132;UBERON:0004121,1.90e-11,171;UBERON:0000924,1.90e-11,171;UBERON:0006601,1.90e-11,171;UBERON:0003528,2.76e-11,34;UBERON:0002020,2.76e-11,34;UBERON:0001893,2.76e-11,34;UBERON:0001950,3.79e-10,20;UBERON:0002038,4.85e-10,1;UBERON:0009661,4.85e-10,1;UBERON:0002950,4.85e-10,1;UBERON:0001891,4.85e-10,1;UBERON:0009616,4.85e-10,1;UBERON:0010286,4.85e-10,1;UBERON:0000941,5.30e-10,1;UBERON:0001785,5.30e-10,1;UBERON:0002464,5.30e-10,1;UBERON:0004904,5.30e-10,1;UBERON:0001021,5.30e-10,1;UBERON:0003902,5.30e-10,1;UBERON:0005425,5.30e-10,1;UBERON:0011216,2.52e-09,223;UBERON:0002619,2.98e-09,22;UBERON:0001869,6.43e-09,32;UBERON:0000956,3.64e-08,25;UBERON:0000203,3.64e-08,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0.272906150057846,0.224723484445085,0,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,1.30139853857622,0.773288812777695,0.335032530668698,0,0.749007023947182,5.9832291840805,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0,1.24644849905432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0.213425530045242,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0.994147647766298,0.844016498463076,0.222617410045812,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0.197286811273867,0,0,0,2.13366625772258,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,1.52581736317083,0.884634079449797,0.591095237907095,0,0,0,0,0,0,0.0897576444097721,0.108647371922008,0,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0.123563938946503,0,0.337005664903385,0.802577647298789,1.40558667435203,0,0,0,0,0,0.61214552326098,0.189559738885464,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.34945333648406,0,0,0,0,0,0.0882561266915003,0,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0.343189995723929,0,0.124252535565433,0,0,0,0,0,0.600420288709789,1.09524303113594,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.408610218334727,0.160753148465019,0.275078873194468,0,0,0,0.182248669974074,0,0,0,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0,0,0,0.387848869084652,0.39669780522807,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,1.95242023843141,0.250381861413,0,0.776503360757966,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0.398095888698616,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0.256916900385838,1.41696576325585,0.159633859057151,1.23069818544453,2.01657356977374,0.138314504928436,0.807378228159255,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0.147856086217045,0.405225507710368,0.781078098613847,0,0.443910671357348,1.09394961803644,0,0,0,0,0,0.672567444437648,0,0,0,0.115233987555779,0,1.15548546060614,0.328863867814245,0,0,0.156986185701028,0.314231179832004,0,0,0,0,0.0714765441766563,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,2.3196288626764,0,0,0,0,0,0.219881033490858,0,0,0,0,0,0,1.76677620403451,2.37637120261669,1.2679671827502,0,0,0,0,0,0,0,0,0,1.43339583151451,0,0,3.05445483238264,0,0,0,0,0,0,0,0,0,0,0,3.78893491091197,0,0.829169439458779,1.55149493792843,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0.272906150057846,0.224723484445085,0,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,1.30139853857622,0.773288812777695,0.335032530668698,0,0.749007023947182,5.9832291840805,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0,1.24644849905432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0.213425530045242,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0.994147647766298,0.844016498463076,0.222617410045812,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0.197286811273867,0,0,0,2.13366625772258,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,1.52581736317083,0.884634079449797,0.591095237907095,0,0,0,0,0,0,0.0897576444097721,0.108647371922008,0,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0.123563938946503,0,0.337005664903385,0.802577647298789,1.40558667435203,0,0,0,0,0,0.61214552326098,0.189559738885464,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.34945333648406,0,0,0,0,0,0.0882561266915003,0,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0.343189995723929,0,0.124252535565433,0,0,0,0,0,0.600420288709789,1.09524303113594,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.408610218334727,0.160753148465019,0.275078873194468,0,0,0,0.182248669974074,0,0,0,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0,0,0,0.387848869084652,0.39669780522807,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,1.95242023843141,0.250381861413,0,0.776503360757966,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0.398095888698616,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0.256916900385838,1.41696576325585,0.159633859057151,1.23069818544453,2.01657356977374,0.138314504928436,0.807378228159255,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0.147856086217045,0.405225507710368,0.781078098613847,0,0.443910671357348,1.09394961803644,0,0,0,0,0,0.672567444437648,0,0,0,0.115233987555779,0,1.15548546060614,0.328863867814245,0,0,0.156986185701028,0.314231179832004,0,0,0,0,0.0714765441766563,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,2.3196288626764,0,0,0,0,0,0.219881033490858,0,0,0,0,0,0,1.76677620403451,2.37637120261669,1.2679671827502,0,0,0,0,0,0,0,0,0,1.43339583151451,0,0,3.05445483238264,0,0,0,0,0,0,0,0,0,0,0,3.78893491091197,0,0.829169439458779,1.55149493792843,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p35@RTN4 | |||
}} | }} |
Latest revision as of 16:43, 17 September 2015
Short description: | p35@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_35_at_RTN4_5end |
Coexpression cluster: | NA |
Association with transcript: | -57bp_to_AB073351_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | Q3LIF4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neutrophil | 6.20e-13 | 3 |