FFCP PHASE1:Hg19::chr2:55253966..55253978,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:55253966..55253978,- to FFCP PHASE1:Hg19::chr2:55253966..55253978,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57142 | |EntrezGene=57142 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=14085 | |HGNC=14085 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NQC3 | |UniProt=Q9NQC3 | ||
|association_with_transcript=-174bp_to_AF063601_5end | |||
|cluster_id=chr2:55253966..55253978,- | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_36_at_RTN4_5end | |||
|id=chr2:55253966..55253978,- | |||
|ontology_enrichment_celltype=CL:0000047!1.91e-07!8;CL:0000540!3.89e-07!6;CL:0000031!3.89e-07!6;CL:0000404!3.89e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000540;1.42e-07;6!CL:0000404;1.42e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,6.89e-12,8;CL:0000540,1.21e-07,6;CL:0000031,1.21e-07,6;CL:0000404,1.21e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006222;2.54e-11;1!UBERON:0005425;2.54e-11;1!CL:0000031;1.42e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.80e-43!57;UBERON:0005068!7.80e-43!57;UBERON:0006241!7.80e-43!57;UBERON:0007135!7.80e-43!57;UBERON:0002020!7.22e-39!34;UBERON:0003528!7.22e-39!34;UBERON:0001017!8.59e-39!82;UBERON:0001893!1.46e-38!34;UBERON:0002780!5.29e-38!41;UBERON:0001890!5.29e-38!41;UBERON:0006240!5.29e-38!41;UBERON:0000073!2.39e-37!94;UBERON:0001016!2.39e-37!94;UBERON:0002791!4.12e-37!33;UBERON:0003080!7.77e-37!42;UBERON:0002616!2.06e-36!59;UBERON:0005743!3.12e-36!86;UBERON:0001869!8.17e-36!32;UBERON:0000955!3.07e-32!69;UBERON:0006238!3.07e-32!69;UBERON:0002619!3.02e-28!22;UBERON:0003075!2.16e-26!86;UBERON:0007284!2.16e-26!86;UBERON:0000956!2.32e-26!25;UBERON:0000203!2.32e-26!25;UBERON:0001950!2.52e-25!20;UBERON:0003056!4.72e-25!61;UBERON:0002346!1.41e-24!90;UBERON:0004121!7.15e-20!169;UBERON:0000924!5.38e-19!173;UBERON:0006601!5.38e-19!173;UBERON:0007023!2.15e-18!115;UBERON:0000033!1.16e-16!123;UBERON:0000153!3.06e-15!129;UBERON:0007811!3.06e-15!129;UBERON:0002420!4.09e-14!9;UBERON:0007245!4.09e-14!9;UBERON:0010009!4.09e-14!9;UBERON:0010011!4.09e-14!9;UBERON:0000454!4.09e-14!9;UBERON:0002308!4.42e-14!9;UBERON:0000125!4.42e-14!9;UBERON:0009663!4.48e-11!7;UBERON:0001871!1.28e-10!7;UBERON:0000200!1.38e-10!6;UBERON:0001872!8.75e-09!5;UBERON:0000349!1.20e-08!5;UBERON:0000025!6.21e-08!194;UBERON:0003076!1.12e-07!15;UBERON:0003057!1.12e-07!15;UBERON:0002298!1.66e-07!8;UBERON:0004732!2.76e-07!13;UBERON:0000064!2.99e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;5.64e-27;22!UBERON:0000956;9.15e-24;25!UBERON:0000203;9.15e-24;25!UBERON:0003528;8.22e-23;34!UBERON:0002020;8.22e-23;34!UBERON:0001950;8.60e-23;20!UBERON:0002771;2.41e-21;2!UBERON:0002791;4.12e-20;32!UBERON:0001869;5.64e-20;32!UBERON:0002780;3.74e-19;41!UBERON:0001890;3.74e-19;41!UBERON:0001893;1.19e-18;34!UBERON:0000073;2.63e-16;53!UBERON:0002616;2.63e-16;53!UBERON:0000200;9.11e-16;6!UBERON:0001871;1.34e-13;6!UBERON:0001016;2.26e-12;83!UBERON:0000955;2.31e-11;68!UBERON:0003112;2.54e-11;1!UBERON:0000941;2.54e-11;1!UBERON:0001785;2.54e-11;1!UBERON:0002464;2.54e-11;1!UBERON:0004904;2.54e-11;1!UBERON:0011158;2.54e-11;1!UBERON:0001021;2.54e-11;1!UBERON:0003128;2.54e-11;1!UBERON:0001703;2.54e-11;1!UBERON:0002241;2.54e-11;1!UBERON:0001017;4.38e-10;75!UBERON:0001872;4.40e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.54e-32,89;UBERON:0001017,3.43e-32,81;UBERON:0001049,1.52e-27,56;UBERON:0005068,1.52e-27,56;UBERON:0006241,1.52e-27,56;UBERON:0007135,1.52e-27,56;UBERON:0002780,3.73e-27,41;UBERON:0001890,3.73e-27,41;UBERON:0003080,3.73e-27,41;UBERON:0006240,3.73e-27,41;UBERON:0003528,4.79e-27,34;UBERON:0002020,4.79e-27,34;UBERON:0002619,5.30e-27,22;UBERON:0000073,9.48e-25,53;UBERON:0002616,9.48e-25,53;UBERON:0000956,8.67e-24,25;UBERON:0000203,8.67e-24,25;UBERON:0002791,2.28e-23,32;UBERON:0001869,2.28e-23,32;UBERON:0001950,1.00e-22,20;UBERON:0000955,4.93e-22,68;UBERON:0006238,4.93e-22,68;UBERON:0001893,5.72e-22,34;UBERON:0003075,2.09e-21,82;UBERON:0007284,2.09e-21,82;UBERON:0003056,2.10e-21,61;UBERON:0002771,3.84e-21,2;UBERON:0002346,2.52e-20,86;UBERON:0010371,1.78e-16,104;UBERON:0004121,5.15e-16,171;UBERON:0000924,5.15e-16,171;UBERON:0006601,5.15e-16,171;UBERON:0000200,1.75e-15,6;UBERON:0010314,1.41e-14,132;UBERON:0001871,1.13e-13,6;UBERON:0011216,3.09e-13,223;UBERON:0000941,1.97e-11,1;UBERON:0001785,1.97e-11,1;UBERON:0002464,1.97e-11,1;UBERON:0004904,1.97e-11,1;UBERON:0001021,1.97e-11,1;UBERON:0003902,1.97e-11,1;UBERON:0005425,1.97e-11,1;UBERON:0003112,3.28e-11,1;UBERON:0011158,3.28e-11,1;UBERON:0003128,3.28e-11,1;UBERON:0001703,3.28e-11,1;UBERON:0002241,3.28e-11,1;UBERON:0004761,3.28e-11,1;UBERON:0009617,3.28e-11,1;UBERON:0007023,9.37e-11,114;UBERON:0001872,3.25e-09,5 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0,0,0.32389366601898,0,0,0,0,0,0,0.309706370895104,0.28769239232215,0,0,0,0,0,0.188242339542605,0,0,0.306083892370903,0.320929027076094,0,0,0,0,0.580418477257168,0,0,0.251248665256743,0.521482918420201,0.217188844705117,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506039384039006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0.128343036279748,0,1.30139853857622,1.54657762555539,0.502548796003046,1.27587750330633,1.49801404789436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0.42793898803392,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0.994147647766298,0.984685914873589,0,0,0.211125408127993,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,1.11321717794222,0,0,0,0,0,0,0,0,0,0.173624994933292,0.885741385813839,0.241192877250816,0,0.442317039724898,0.295547618953547,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,1.1713222286267,0,0,0,0,0,1.83643656978294,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0.171986032471617,0,0.0730893170861856,0,0,0.0882561266915003,0.451961481561065,0,0,0.50648636764703,0,0,0,0.19980960958213,0,0,0,0.14405479798815,0.248505071130865,0,0,0,0,0,0.600420288709789,1.09524303113594,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0.0674035438541849,0,0,1.59045937961861,0.408610218334727,0,0.275078873194468,0.415440338029185,0.2249738915515,0,0.121499113316049,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,1.05786081394152,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,5.61320818549031,1.001527445652,0,0.887432412294818,0.372578417648301,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0.380805212168795,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489473409012935,0,0,0,0,0.192914038270915,0,0,0,0,1.10606748921385,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0.255788742607303,0.107824811396682,0,0.109209638192014,0,0,0,0,0,0.23658523500376,0,0,0.3062454773532,0.192687675289379,0,0.798169295285756,0.41023272848151,1.00828678488687,0.207471757392654,1.13032951942296,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0.607838261565552,0.781078098613847,1.65349437200947,0.253663240775627,2.18789923607288,0,0,0,0,0,0,0,0,0,0,0,0.815636795721981,0.328863867814245,0,0,0,0.471346769748006,0,0,0,0.47775168788705,0,0.47404083519818,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0.102662806856247,0,0.485710993059139,0.233939463462106,0,0,0,0.659643100472575,0,0.0771741581079447,0,0,0,0,1.37415926980462,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0.716697915757256,0,0.339957450954573,0.436350690340377,0.5290268405154,0,0,0,0.126166424835079,0.109265571963696,0,0,0,0.18378979906969,0.50141507858475,0,0,0.829169439458779,1.44806194206653,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0.665756774185513,0,0 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0,0,0.32389366601898,0,0,0,0,0,0,0.309706370895104,0.28769239232215,0,0,0,0,0,0.188242339542605,0,0,0.306083892370903,0.320929027076094,0,0,0,0,0.580418477257168,0,0,0.251248665256743,0.521482918420201,0.217188844705117,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506039384039006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0.128343036279748,0,1.30139853857622,1.54657762555539,0.502548796003046,1.27587750330633,1.49801404789436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0.42793898803392,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0.994147647766298,0.984685914873589,0,0,0.211125408127993,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,1.11321717794222,0,0,0,0,0,0,0,0,0,0.173624994933292,0.885741385813839,0.241192877250816,0,0.442317039724898,0.295547618953547,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,1.1713222286267,0,0,0,0,0,1.83643656978294,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0.171986032471617,0,0.0730893170861856,0,0,0.0882561266915003,0.451961481561065,0,0,0.50648636764703,0,0,0,0.19980960958213,0,0,0,0.14405479798815,0.248505071130865,0,0,0,0,0,0.600420288709789,1.09524303113594,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0.0674035438541849,0,0,1.59045937961861,0.408610218334727,0,0.275078873194468,0.415440338029185,0.2249738915515,0,0.121499113316049,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,1.05786081394152,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,5.61320818549031,1.001527445652,0,0.887432412294818,0.372578417648301,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0.380805212168795,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489473409012935,0,0,0,0,0.192914038270915,0,0,0,0,1.10606748921385,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0.255788742607303,0.107824811396682,0,0.109209638192014,0,0,0,0,0,0.23658523500376,0,0,0.3062454773532,0.192687675289379,0,0.798169295285756,0.41023272848151,1.00828678488687,0.207471757392654,1.13032951942296,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0.607838261565552,0.781078098613847,1.65349437200947,0.253663240775627,2.18789923607288,0,0,0,0,0,0,0,0,0,0,0,0.815636795721981,0.328863867814245,0,0,0,0.471346769748006,0,0,0,0.47775168788705,0,0.47404083519818,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0.102662806856247,0,0.485710993059139,0.233939463462106,0,0,0,0.659643100472575,0,0.0771741581079447,0,0,0,0,1.37415926980462,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0.716697915757256,0,0.339957450954573,0.436350690340377,0.5290268405154,0,0,0,0.126166424835079,0.109265571963696,0,0,0,0.18378979906969,0.50141507858475,0,0,0.829169439458779,1.44806194206653,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0.665756774185513,0,0 | ||
|short_description=p36@RTN4 | |||
}} | }} |
Latest revision as of 16:46, 17 September 2015
Short description: | p36@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_36_at_RTN4_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | -174bp_to_AF063601_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | Q9NQC3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 6.89e-12 | 8 |
neuron | 1.21e-07 | 6 |
neuroblast | 1.21e-07 | 6 |
electrically signaling cell | 1.21e-07 | 6 |